RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6452
(594 letters)
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 53.0 bits (127), Expect = 2e-07
Identities = 58/236 (24%), Positives = 89/236 (37%), Gaps = 16/236 (6%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS I + + L NL LDLS N+ D+ + L+NL LDLS NK+S+
Sbjct: 146 DLSDNKIESLPSPLRN-LPNLKNLDLSFNDLSDLPKL----LSNLSNLNNLDLSGNKISD 200
Query: 300 LPDFLNFKV-LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVH 358
LP + L+ELD+S+N+ + L S ++S+N E +P +
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSL------SNLKNLSGLELSNNKLEDLPESIGNL 254
Query: 359 FCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418
L LD+S+NQI + L+ ++ N L LN+ T
Sbjct: 255 SN-LETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313
Query: 419 PFFE---HLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471
E + + N + E L L N + N L N
Sbjct: 314 KALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYIVKN 369
Score = 52.7 bits (126), Expect = 3e-07
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 16/162 (9%)
Query: 422 EHLPIWLLNHMELKENGVFSNLISLHM--QNTAAVMSNVSQLKYLKNIKYLNCSNDIDHR 479
+ L ++ ++ EN NL+ L N + SN+S+L L N+ L+ N
Sbjct: 73 DLLSPSGISSLDGSENL--LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDN----- 125
Query: 480 KSQDFVNVLWELPLSILYL-SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP 538
N + ++P I L S+++EL LS+ ++ +P + NL L+ L++S N + LP
Sbjct: 126 ------NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP 179
Query: 539 ESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYW 580
+ +NL +L LD+S NK++ LP +LS L
Sbjct: 180 KLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI 221
Score = 45.3 bits (107), Expect = 5e-05
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 459 SQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWE-----------LPLSILYLSSIQELHL 506
S L+ L N+K L+ S ND+ LP I LS+++EL L
Sbjct: 157 SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDL 216
Query: 507 SNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVM 566
SN + + + NL L L +S+NK+ LPES NL +L+ LD+S N+++ +
Sbjct: 217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI-SSLGS 275
Query: 567 LSNLTTFY 574
L+NL
Sbjct: 276 LTNLRELD 283
Score = 43.4 bits (102), Expect = 3e-04
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS 499
+NL SL + N N+K L+ S+ N + LP + L
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-----------NKIESLPSPLRNLP 163
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTM 559
+++ L LS L+ +P+ + NL L L++S NK+ LP L +L+ LD+S N +
Sbjct: 164 NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE 223
Query: 560 LPDGFVMLSNLTTFYAQ 576
L L NL+
Sbjct: 224 LLSSLSNLKNLSGLELS 240
Score = 38.0 bits (88), Expect = 0.011
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 486 NVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLK 545
N + EL S+ L ++ L LSN +L +PE IGNL LE L++S+N++ + S +L
Sbjct: 219 NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS-SLGSLT 277
Query: 546 SLKILDVSYNKLTMLP 561
+L+ LD+S N L+
Sbjct: 278 NLRELDLSGNSLSNAL 293
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 47.2 bits (113), Expect = 3e-07
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 259 NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISH 316
NL LDLS+N + + + + L NL VLDLS N L+ + F L+ LD+S
Sbjct: 1 NLKSLDLSNNR---LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57
Query: 317 NNF 319
NN
Sbjct: 58 NNL 60
Score = 42.1 bits (100), Expect = 2e-05
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+++LS+ + + + + L NL VLDLS NN + + L +L LDLS N L
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN---LTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 38.3 bits (90), Expect = 4e-04
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 524 LEKLNISHNKVYKLP-ESFANLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFYAQR 577
L+ L++S+N++ +P +F L +LK+LD+S N LT + P+ F L +L +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57
Score = 37.1 bits (87), Expect = 0.001
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 500 SIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKL 557
+++ L LSN +L IP+ L L+ L++S N + + PE+F+ L SL+ LD+S N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 36.0 bits (84), Expect = 0.003
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 31/89 (34%)
Query: 286 NLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDI 343
NL LDLS+N+L+ +PD F LK LD+S NN S+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA----------------- 43
Query: 344 SHNNFESMPLCLQVHFCKLVKLDISHNQI 372
F +P L LD+S N +
Sbjct: 44 ----FSGLP--------SLRSLDLSGNNL 60
Score = 27.5 bits (62), Expect = 3.0
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 546 SLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+LK LD+S N+LT++PDG F L NL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLD 30
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 41.7 bits (99), Expect = 2e-05
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
TNL LDLS+N++++LP N L+ LD+S N +
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLS 39
Score = 37.9 bits (89), Expect = 4e-04
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLN 305
TNL LDLS+N D+ + L NL LDLS NK+++L N
Sbjct: 1 TNLETLDLSNNQITDLPPLS-----NLPNLETLDLSGNKITDLSPLSN 43
Score = 36.3 bits (85), Expect = 0.001
Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 524 LEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP 561
LE L++S+N++ LP +NL +L+ LD+S NK+T L
Sbjct: 3 LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39
Score = 30.9 bits (71), Expect = 0.12
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE 539
+++ L LSN Q+ +P + NL LE L++S NK+ L
Sbjct: 2 NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 25.5 bits (57), Expect = 9.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQE 278
L NL LDLS N D++ +
Sbjct: 20 SNLPNLETLDLSGNKITDLSPLSN 43
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 46.8 bits (111), Expect = 3e-05
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 244 QDINFVQESMSQKLTNLTV---LDLSHNNHQ-DINFVQESMSQKLTNLIVLDLSHNKLS- 298
QD +F E + + T L + LD+S+NN Q IN + M L +L L+ NK
Sbjct: 412 QDNSFSGE-LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS----LQMLSLARNKFFG 466
Query: 299 ELPDFLNFKVLKELDISHNNF-ESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
LPD K L+ LD+S N F ++P L + K S++ +S + + C
Sbjct: 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSCK-- 523
Query: 358 HFCKLVKLDISHNQI 372
KLV LD+SHNQ+
Sbjct: 524 ---KLVSLDLSHNQL 535
Score = 43.3 bits (102), Expect = 3e-04
Identities = 77/307 (25%), Positives = 136/307 (44%), Gaps = 61/307 (19%)
Query: 284 LTNLIVLDLSHNKLS-ELPDFLNFKVLKELDISH---NNFE--------SMPLCLQV--- 328
L LI LDLS N LS E+P+ + L+ L+I H NNF S+P LQV
Sbjct: 283 LQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPR-LQVLQL 339
Query: 329 ---HFYVHIPY---KHSQS---DISHNNFES-MP--LCLQVHFCKLVKLDIS-HNQIKIL 375
F IP KH+ D+S NN +P LC + KL+ S +I
Sbjct: 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI--- 396
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF-FEHLPIWLLNHMEL 434
P+ ++ + L++ + S P F LP L+ +++
Sbjct: 397 --PKSLGACRSL-----------------RRVRLQDNSFSGELPSEFTKLP--LVYFLDI 435
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK-SQDFVNVLWELPL 493
N + + S + M ++++ K+ + S +++ S++ + +P
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA--VPR 493
Query: 494 SILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILD 551
+ LS + +L LS +L+ IP+++ + L L++SHN++ ++P SF+ + L LD
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553
Query: 552 VSYNKLT 558
+S N+L+
Sbjct: 554 LSQNQLS 560
Score = 41.4 bits (97), Expect = 0.001
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
++LS + L+ L L LS N ++ L+ LDLSHN+LS
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSEN---KLSGEIPDELSSCKKLVSLDLSHNQLS 536
Query: 299 -ELPD-FLNFKVLKELDISHNNFE-SMPLCL-QVHFYVHIPYKHSQSDISHNNFE-SMP 352
++P F VL +LD+S N +P L V V Q +ISHN+ S+P
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV-------QVNISHNHLHGSLP 588
Score = 36.7 bits (85), Expect = 0.036
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 423 HLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI--KYLNCSNDIDHRK 480
+P L N L+ + SN Q + + Q+K LK I Y N S +I +
Sbjct: 179 KIPNSLTNLTSLEFLTLASN------QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232
Query: 481 SQ-------DFV--NVLWELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNIS 530
D V N+ +P S+ L ++Q L L +L+ IP I +L L L++S
Sbjct: 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292
Query: 531 HNKVY-KLPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNL 570
N + ++PE L++L+IL + N T +P L L
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334
Score = 36.0 bits (83), Expect = 0.072
Identities = 72/274 (26%), Positives = 127/274 (46%), Gaps = 45/274 (16%)
Query: 283 KLTNLIVLDLSHNKLS-ELPDFL-NFKVLKELDISHNNFE-----SMPLCLQVHFYVHIP 335
K NL VLDLS N L+ E+P+ L + L +L + N+ E S+ C + V +
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR-RVRLQ 412
Query: 336 YKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQI--KILHKPRCTHTLQTFSMNHN- 392
++ + F +PL V+F LDIS+N + +I + +LQ S+ N
Sbjct: 413 DNSFSGELP-SEFTKLPL---VYF-----LDISNNNLQGRINSRKWDMPSLQMLSLARNK 463
Query: 393 IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA 452
+P+ F + L+ L++S + F +P L + EL + + N +S +
Sbjct: 464 FFGGLPDSFGSKR---LENLDLSR-NQFSGAVPRKLGSLSELMQLKLSENKLSGEIP--- 516
Query: 453 AVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN 512
+L K + L+ S++ + ++P S + + +L LS QL+
Sbjct: 517 ------DELSSCKKLVSLDLSHN----------QLSGQIPASFSEMPVLSQLDLSQNQLS 560
Query: 513 C-IPEDIGNLICLEKLNISHNKVY-KLPESFANL 544
IP+++GN+ L ++NISHN ++ LP + A L
Sbjct: 561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594
Score = 35.6 bits (82), Expect = 0.076
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-IPEDIGNLICL 524
+++YLN SN+ +F + + +++ L LSN L+ IP DIG+ L
Sbjct: 119 SLRYLNLSNN-------NFTG-----SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166
Query: 525 EKLNISHNK-VYKLPESFANLKSLKILDVSYNKLT 558
+ L++ N V K+P S NL SL+ L ++ N+L
Sbjct: 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201
Score = 34.8 bits (80), Expect = 0.13
Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 47/291 (16%)
Query: 303 FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKL 362
FLNF +L + E + L L ++ P K+ + S + + ++
Sbjct: 20 FLNFSML--------HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRV 71
Query: 363 VKLDISHNQIK------ILHKPRCTHTLQTFSM-NHNIGMKIPEWFWYQEFLCLKELNMS 415
V +D+S I I P +QT ++ N+ + IP+ + L+ LN+S
Sbjct: 72 VSIDLSGKNISGKISSAIFRLP----YIQTINLSNNQLSGPIPDDIFTTSS-SLRYLNLS 126
Query: 416 STDPFFEHLP---IWLLNHMELKEN----------GVFSNLISLHMQNTAAVMSNVSQLK 462
+ + F +P I L ++L N G FS+L L + V + L
Sbjct: 127 NNN-FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-IPEDIGNL 521
L ++++L + S V ++P + + S++ ++L L+ IP +IG L
Sbjct: 186 NLTSLEFLTLA-------SNQLVG---QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235
Query: 522 ICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNL 570
L L++ +N + +P S NLK+L+ L + NKL+ +P L L
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286
Score = 32.9 bits (75), Expect = 0.65
Identities = 82/328 (25%), Positives = 138/328 (42%), Gaps = 78/328 (23%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLI-------VLDLSHNKLS-ELPD--FLNFK 307
+ + +DLS N +S K+++ I ++LS+N+LS +PD F
Sbjct: 69 SRVVSIDLSGKN----------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS 118
Query: 308 VLKELDISHNNFE-SMPLCLQVHFYVHIPYKHSQSDISHNNFE-SMPLCLQVHFCKLVKL 365
L+ L++S+NNF S+P + D+S+N +P + F L L
Sbjct: 119 SLRYLNLSNNNFTGSIPRGSIPNLET--------LDLSNNMLSGEIPNDIGS-FSSLKVL 169
Query: 366 DISHNQIKILHKPRCTHTLQ-----TFSMNHNIG--------MKIPEWFWYQEFLCLKEL 412
D+ N + + P L T + N +G MK +W + L
Sbjct: 170 DLGGNVL-VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY------LGYN 222
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
N+S P+ E + LNH++L V++NL + + N+ L+YL Y N
Sbjct: 223 NLSGEIPY-EIGGLTSLNHLDL----VYNNLTG----PIPSSLGNLKNLQYL--FLYQNK 271
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNI-S 530
+ +P SI L + L LS+ L+ IPE + L LE L++ S
Sbjct: 272 LSG--------------PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317
Query: 531 HNKVYKLPESFANLKSLKILDVSYNKLT 558
+N K+P + +L L++L + NK +
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFS 345
Score = 31.0 bits (70), Expect = 2.2
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 236 IFTVNLSHQDINF-VQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
I T+NLS+ ++ + + + ++L L+LS+NN F + NL LDLS+
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-----FTGSIPRGSIPNLETLDLSN 149
Query: 295 NKLS-ELP-DFLNFKVLKELDISHN 317
N LS E+P D +F LK LD+ N
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGN 174
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 44.7 bits (105), Expect = 1e-04
Identities = 65/292 (22%), Positives = 107/292 (36%), Gaps = 84/292 (28%)
Query: 276 VQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIP 335
+ + +++T LI L +N+L LP+ L + K L + N S+P L P
Sbjct: 193 IPACIPEQITTLI---LDNNELKSLPENLQGNI-KTLYANSNQLTSIPATL--------P 240
Query: 336 YKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGM 395
+ ++S N +P L L LD+ HN+I L + L+ S+ N
Sbjct: 241 DTIQEMELSINRITELPERLP---SALQSLDLFHNKISCLPE-NLPEELRYLSVYDNSIR 296
Query: 396 KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVM 455
+P HLP S + L++Q+ +
Sbjct: 297 TLPA-----------------------HLP---------------SGITHLNVQSNS--- 315
Query: 456 SNVSQLKYLK-----NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQ 510
L L +K L N L LP S+ +Q L +S Q
Sbjct: 316 -----LTALPETLPPGLKTLEAGE-----------NALTSLPASLP--PELQVLDVSKNQ 357
Query: 511 LNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD 562
+ +PE + + L++S N + LPE+ +L+I+ S N L LP+
Sbjct: 358 ITVLPETLPP--TITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPE 405
Score = 43.5 bits (102), Expect = 3e-04
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 254 SQKLTNL--TVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKE 311
S +LT++ T+ D IN + E + + L LDL HNK+S LP+ L + L+
Sbjct: 229 SNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLP-EELRY 287
Query: 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVK------- 364
L + N+ ++P H+P + ++ N+ ++P L L
Sbjct: 288 LSVYDNSIRTLP--------AHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS 339
Query: 365 -----------LDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPE 399
LD+S NQI +L + T+ T ++ N +PE
Sbjct: 340 LPASLPPELQVLDVSKNQITVLPET-LPPTITTLDVSRNALTNLPE 384
Score = 36.2 bits (83), Expect = 0.053
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
S I L++ + L +PE + L+ L N + LP S L++LDVS N++T
Sbjct: 304 SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT 359
Query: 559 MLPDGFVMLSNLTTFYAQR 577
+LP+ + +TT R
Sbjct: 360 VLPE--TLPPTITTLDVSR 376
Score = 35.4 bits (81), Expect = 0.089
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTM 559
+IQE+ LS ++ +PE + + L+ L++ HNK+ LPE+ L+ L V N +
Sbjct: 242 TIQEMELSINRITELPERLPS--ALQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRT 297
Query: 560 LPDGFVMLSNLTTFYAQRKYWMFLTISL 587
LP + S +T Q L +L
Sbjct: 298 LPAH--LPSGITHLNVQSNSLTALPETL 323
Score = 31.2 bits (70), Expect = 1.7
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 485 VNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
+N + ELP + S++Q L L + +++C+PE++ L L++ N + LP +
Sbjct: 250 INRITELPERLP--SALQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAHLPS- 304
Query: 545 KSLKILDVSYNKLTMLPDGFVMLSNLTTFYA 575
+ L+V N LT LP+ L T A
Sbjct: 305 -GITHLNVQSNSLTALPETLPP--GLKTLEA 332
Score = 29.7 bits (66), Expect = 5.8
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 260 LTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNF 319
L VLD+S N I + E++ +T L D+S N L+ LP+ L L+ + S NN
Sbjct: 348 LQVLDVSKNQ---ITVLPETLPPTITTL---DVSRNALTNLPENLP-AALQIMQASRNNL 400
Query: 320 ESMPLCL 326
+P L
Sbjct: 401 VRLPESL 407
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 42.9 bits (101), Expect = 4e-04
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 491 LPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLK 548
+P I L +Q ++LS + IP +G++ LE L++S+N +PES L SL+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 549 ILDVSYNKLT 558
IL+++ N L+
Sbjct: 494 ILNLNGNSLS 503
Score = 42.5 bits (100), Expect = 6e-04
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 514 IPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNL 570
IP DI L L+ +N+S N + +P S ++ SL++LD+SYN +P+ L++L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492
Score = 29.0 bits (65), Expect = 8.7
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 239 VNLSHQDIN-FVQESMSQKLTNLTVLDLSHNN-HQDINFVQESMSQKLTNLIVLDLSHNK 296
+ L +Q + F+ +S KL +L ++LS N+ +I S+ T+L VLDLS+N
Sbjct: 423 LGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSI----TSLEVLDLSYNS 477
Query: 297 LS-ELPDFL-NFKVLKELDISHN 317
+ +P+ L L+ L+++ N
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGN 500
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 32.3 bits (75), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 284 LTNLIVLDLSHNKLSELPD 302
L NL LDLS+N+LS LP
Sbjct: 1 LPNLRELDLSNNQLSSLPP 19
Score = 29.6 bits (68), Expect = 0.23
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 544 LKSLKILDVSYNKLTMLPDG 563
L +L+ LD+S N+L+ LP G
Sbjct: 1 LPNLRELDLSNNQLSSLPPG 20
Score = 25.8 bits (58), Expect = 5.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 257 LTNLTVLDLSHNN 269
L NL LDLS+N
Sbjct: 1 LPNLRELDLSNNQ 13
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 32.3 bits (75), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 284 LTNLIVLDLSHNKLSELPD 302
L NL LDLS+N+LS LP
Sbjct: 1 LPNLRELDLSNNQLSSLPP 19
Score = 29.6 bits (68), Expect = 0.23
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 544 LKSLKILDVSYNKLTMLPDG 563
L +L+ LD+S N+L+ LP G
Sbjct: 1 LPNLRELDLSNNQLSSLPPG 20
Score = 25.8 bits (58), Expect = 5.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 257 LTNLTVLDLSHNN 269
L NL LDLS+N
Sbjct: 1 LPNLRELDLSNNQ 13
>gnl|CDD|226070 COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic
ion transport and metabolism].
Length = 522
Score = 33.9 bits (78), Expect = 0.25
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 31 TDFGPDENEEPVPTQIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHL 82
D P PVP ++ D F+ I R + S DHTVH+
Sbjct: 59 LDPEPLNGGRPVPVIWEVSTD------ENFSNIVRKGT-VIASPELDHTVHV 103
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 33.1 bits (76), Expect = 0.36
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 18/86 (20%)
Query: 498 LSSIQELHLSNVQLNCIPEDIG---------NLICLEKLNISHNKV-----YKLPESF-A 542
L + L + ++ N + D G +L LE LN+ N + L + +
Sbjct: 189 LKANCNLEVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247
Query: 543 NLKSLKILDVSYNKLTMLPDGFVMLS 568
SL L +S N +T DG L+
Sbjct: 248 PNISLLTLSLSCNDITD--DGAKDLA 271
Score = 30.4 bits (69), Expect = 2.3
Identities = 70/321 (21%), Positives = 97/321 (30%), Gaps = 104/321 (32%)
Query: 260 LTVLDLSHNNHQDIN-FVQESMS--QKLTNLIVLDLSHNKLSE-----LPDFLNFKVLKE 311
L L LS N I +Q + K L LDLS N L L L L+E
Sbjct: 53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQE 112
Query: 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC--LQVHFCKLVKLDISH 369
L +++N L L L L+ L KL +
Sbjct: 113 LKLNNNGLGDRGLRL--------------------------LAKGLKDLPPALEKLVLGR 146
Query: 370 NQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS---TDPFFEHLPI 426
N+ L C + N + LKELN+++ D L
Sbjct: 147 NR---LEGASCEALAKALRANRD----------------LKELNLANNGIGDAGIRALA- 186
Query: 427 WLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL----KYLKNIKYLNCSNDIDHRKSQ 482
LK N NL L + N S L LK+++ LN +
Sbjct: 187 -----EGLKAN---CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD-------- 230
Query: 483 DFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK-----VYKL 537
N L + + L + + N I L L++S N L
Sbjct: 231 ---NNLTDAGAA--------ALASALLSPN---------ISLLTLSLSCNDITDDGAKDL 270
Query: 538 PESFANLKSLKILDVSYNKLT 558
E A +SL LD+ NK
Sbjct: 271 AEVLAEKESLLELDLRGNKFG 291
Score = 28.9 bits (65), Expect = 8.7
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQ--ESMSQKLTNLIVLDLSHNKL 297
NL+ + ++ +L L LS N+ D E +++K + L+ LDL NK
Sbjct: 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES-LLELDLRGNKF 290
Query: 298 SELPDFLNFKVLKE 311
E L + L E
Sbjct: 291 GEEGAQLLAESLLE 304
>gnl|CDD|214639 smart00364, LRR_BAC, Leucine-rich repeats, bacterial type.
Length = 20
Score = 28.4 bits (65), Expect = 0.63
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 546 SLKILDVSYNKLTMLPD 562
SLK L+VS N+LT LP+
Sbjct: 3 SLKELNVSNNQLTSLPE 19
Score = 26.1 bits (59), Expect = 3.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 286 NLIVLDLSHNKLSELPDF 303
+L L++S+N+L+ LP+
Sbjct: 3 SLKELNVSNNQLTSLPEL 20
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 31.4 bits (71), Expect = 1.9
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 442 NLISLHMQNTA--AVMSNVSQLKYLKNIKYLNCSN-----DIDHRKSQDFVNV-----LW 489
NL+ L MQ + + V L L+NI N D+ + + + + L
Sbjct: 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV 671
Query: 490 ELPLSILYLSSIQELHLSN-VQLNCIPEDIGNLICLEKLNIS 530
ELP SI YL+ +++L +S L +P I NL L +LN+S
Sbjct: 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 30.9 bits (69), Expect = 2.3
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
S ++EL +S +L +P L ++L +S N++ LP + L SL V N+LT
Sbjct: 382 SGLKELIVSGNRLTSLPVLPSEL---KELMVSGNRLTSLPMLPSGLLSLS---VYRNQLT 435
Query: 559 MLPDGFVMLSNLTT 572
LP+ + LS+ TT
Sbjct: 436 RLPESLIHLSSETT 449
Score = 29.4 bits (65), Expect = 7.3
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLI-----------------CLEKLNISHNKVYKLPESF 541
S +QEL +S+ QL +P L L++L +S N++ LP
Sbjct: 342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP 401
Query: 542 ANLKSLKILDVSYNKLTMLPDGFVMLS 568
+ LK L + L MLP G + LS
Sbjct: 402 SELKELMVSGNRLTSLPMLPSGLLSLS 428
>gnl|CDD|177590 PHA03349, PHA03349, tegument protein UL16; Provisional.
Length = 343
Score = 30.0 bits (68), Expect = 3.6
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 35 PDENEEPVPTQIDMEADISQLEAPTFTTITRGPPKP 70
PD EP+PT D+S F + P P
Sbjct: 127 PDPAAEPLPTAPAAHLDLS-----AFLVPAQPPKDP 157
>gnl|CDD|203206 pfam05209, MinC_N, Septum formation inhibitor MinC, N-terminal
domain. In Escherichia coli ftsZ assembles into a Z
ring at midcell while assembly at polar sites is
prevented by the min system. MinC, a component of this
system, is an inhibitor of FtsZ assembly that is
positioned within the cell by interaction with MinDE.
MinC is an oligomer, probably a dimer. The C terminal
half of MinC is the most conserved and interacts with
MinD. The N terminal half is thought to interact with
FtsZ.
Length = 99
Score = 28.5 bits (64), Expect = 3.6
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 248 FVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNL--------IVLDLSHNKLSE 299
Q + K + T+L L H + Q++ + +++S+K+ +VL++S +
Sbjct: 1 MSQAPVDLKGSKFTLLVL-HLHTQNLERILQALSKKIAQAPKFFAHAPVVLNVS-----K 54
Query: 300 LPDFLNFKVLKELDISHN 317
L + ++ K LK L H
Sbjct: 55 LEENVDLKALKSLCSRHG 72
>gnl|CDD|233222 TIGR00986, 3a0801s05tom22, mitochondrial import receptor subunit
Tom22. The mitochondrial protein translocase (MPT)
family, which brings nuclearly encoded preproteins into
mitochondria, is very complex with 19 currently
identified protein constituents.These proteins include
several chaperone proteins, four proteins of the outer
membrane translocase (Tom) import receptor, five
proteins of the Tom channel complex, five proteins of
the inner membrane translocase (Tim) and three "motor"
proteins. This family is specific for the Tom22
proteins [Transport and binding proteins, Amino acids,
peptides and amines].
Length = 145
Score = 29.2 bits (65), Expect = 3.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 14 LKLTETEEANNGTPEDNTDFGPDE---NEEPVPTQIDMEADISQLEAPTFT 61
++LTE E+ + PE T P+E + V ++ +++D LE TFT
Sbjct: 2 VQLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEETFT 52
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may not
find all Leucine Rich Repeats in a protein. Leucine Rich
Repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 22
Score = 26.0 bits (58), Expect = 4.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 286 NLIVLDLSHNKLSELPDFL 304
NL LDLS+N LS LP L
Sbjct: 1 NLEELDLSNNNLSSLPPSL 19
Score = 25.2 bits (56), Expect = 9.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 524 LEKLNISHNKVYKLPESFANL 544
LE+L++S+N + LP S NL
Sbjct: 2 LEELDLSNNNLSSLPPSLGNL 22
>gnl|CDD|205682 pfam13504, LRR_7, Leucine rich repeat.
Length = 17
Score = 25.6 bits (57), Expect = 5.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 285 TNLIVLDLSHNKLSELP 301
T+L LDLS+N+L+ LP
Sbjct: 1 TSLRTLDLSNNRLTSLP 17
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 29.3 bits (65), Expect = 6.6
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 72 LSLRWDHTVHLIGEKVLN------PIIHTCEKCEKPIMIYGRMICTI--MKFGKEITTVL 123
+S W ++HLIG+ +L P + E P M++G T MK GK + L
Sbjct: 316 VSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTL 375
Query: 124 E 124
E
Sbjct: 376 E 376
>gnl|CDD|183768 PRK12818, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 256
Score = 28.9 bits (65), Expect = 6.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 127 TNSGTQDTITNNSVEMDENTVKTEALSTRTFCDHELQ 163
T QD ITNN ++ K++ L+ ++F D ++
Sbjct: 14 TLEAKQDVITNNLANVNTVGYKSDNLAFKSFEDVLIE 50
>gnl|CDD|179654 PRK03818, PRK03818, putative transporter; Validated.
Length = 552
Score = 29.1 bits (66), Expect = 7.6
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 14/92 (15%)
Query: 78 HTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMICTIMKFGKEI-----TTVLEEDTN---- 128
+ I +V NP +H + PI+ + +C+ +K G + T+++
Sbjct: 202 ELLQTINIRVENPNLHGKAIKDVPILNGDKFVCSRLKRGDTLMVPSPDTIIQLGDLLHLV 261
Query: 129 SGTQDT-----ITNNSVEMDENTVKTEALSTR 155
+D + V+ +T T+ S R
Sbjct: 262 GQPEDLHKAQLVIGEEVDTSLSTRGTDLRSER 293
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.404
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,717,288
Number of extensions: 2700978
Number of successful extensions: 2190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2114
Number of HSP's successfully gapped: 88
Length of query: 594
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 492
Effective length of database: 6,413,494
Effective search space: 3155439048
Effective search space used: 3155439048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.3 bits)