RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6452
(594 letters)
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 140 bits (354), Expect = 5e-35
Identities = 50/341 (14%), Positives = 97/341 (28%), Gaps = 75/341 (21%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMS-QKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
+ + + +NN + S S QK+ L +LD HNK+ L F L +L +
Sbjct: 546 TGPKIQIFYMGYNN---LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL 602
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPLCLQVHFC-KLVKLDISH 369
+N E +P + SHN + +P + +D S+
Sbjct: 603 DYNQIEEIPEDF---------CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653
Query: 370 NQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLL 429
N+I + I + + + +S + + P L
Sbjct: 654 NKIGSEGR------------------NISCSMDDYKGINASTVTLSYNE--IQKFPTELF 693
Query: 430 NHMELKENGVFSNLISLHMQN-------TAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQ 482
S + ++ + N ++ K + ++
Sbjct: 694 ATG--------SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF-------- 737
Query: 483 DFVNVLWELPLSILY--LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY----- 535
N L L L + + +S + P N L+ I H +
Sbjct: 738 ---NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794
Query: 536 --KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ P SL L + N + + + + L
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEK--LTPQLYILD 833
Score = 133 bits (337), Expect = 6e-33
Identities = 52/364 (14%), Positives = 109/364 (29%), Gaps = 49/364 (13%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
N + +E L +LT ++L + + + + + + L L L+++ N+
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPN--MTQLPDFLYD-LPELQSLNIACNRG 527
Query: 298 SELPD-----------FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----D 342
++ + +NN E P + + D
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL--------QKMVKLGLLD 579
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIPEW 400
HN + KL L + +NQI+ + + C T ++ +HN IP
Sbjct: 580 CVHNKVRHLEAFGTNV--KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637
Query: 401 FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460
F + + ++ S + M+ + N ++ +
Sbjct: 638 FNAKSVYVMGSVDFSYN--KIGSEGRNISCSMDDYK---GINASTVTLSYNEIQKFPTEL 692
Query: 461 LKYLKNIKYLN-CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI- 518
I + +N + N L + + + L +L + +D
Sbjct: 693 FATGSPISTIILSNNLMTSIPE----NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748
Query: 519 -GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNK-------LTMLPDGFVMLSNL 570
L L +++S+N P N LK + + + L P G +L
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808
Query: 571 TTFY 574
Sbjct: 809 IQLQ 812
Score = 124 bits (313), Expect = 6e-30
Identities = 52/318 (16%), Positives = 92/318 (28%), Gaps = 77/318 (24%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNF---KVLKE 311
LT L L +N I + E + L SHNKL +P+ N V+
Sbjct: 592 GTNVKLTDLKLDYNQ---IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Query: 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQ 371
+D S+N S + + S +S+N + P L + + +S+N
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708
Query: 372 IKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNH 431
+ + + + + L +++ N
Sbjct: 709 MTSIPENSLKPKDGNYKNTYL----------------LTTIDLRF-------------NK 739
Query: 432 M-ELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
+ L ++ + L L ++ S N
Sbjct: 740 LTSLSDDFRATTLPYL---------------------SNMDVSY-----------NCFSS 767
Query: 491 LPLSILYLSSIQELHLS-------NVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFAN 543
P L S ++ + N L P I L +L I N + K+ E
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL-- 825
Query: 544 LKSLKILDVSYNKLTMLP 561
L ILD++ N +
Sbjct: 826 TPQLYILDIADNPNISID 843
Score = 115 bits (289), Expect = 6e-27
Identities = 51/344 (14%), Positives = 105/344 (30%), Gaps = 27/344 (7%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++L+ +LT L VL ++ + ++LT + + H
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG--RLFGDEELTPDMSEERKHRIR 384
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
+ L D+ + P + I K +Q N + +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
Q KL + +++ S + L ++ +
Sbjct: 445 Q-RLTKLQIIYFANSPFTYD--NIAVDWEDANSDYAKQYENEELSWS--NLKDLTDVELY 499
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
+ P LP +L + EL+ + N Q A I+
Sbjct: 500 NC-PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY- 557
Query: 476 IDHRKSQDFVNVLWELP--LSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK 533
N L E P S+ + + L + ++ + G + L L + +N+
Sbjct: 558 ----------NNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQ 606
Query: 534 VYKLPES-FANLKSLKILDVSYNKLTMLPDGFVM--LSNLTTFY 574
+ ++PE A ++ L S+NKL +P+ F + + +
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650
Score = 90.7 bits (225), Expect = 4e-19
Identities = 45/334 (13%), Positives = 91/334 (27%), Gaps = 86/334 (25%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
+T L L+ + V +++ Q LT L VL + + + L D+S
Sbjct: 322 NGRVTGLSLAGFGAKGR--VPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELT-PDMSE 377
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
+ + F L + D+ + I
Sbjct: 378 ERKHRIRMHY------------------KKMFLDYDQRLNL-------SDLLQDAI---- 408
Query: 377 KPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436
+ N + + + LK+ + + + +
Sbjct: 409 -----------NRNPEMKPIKKD-----SRISLKDTQIGNLTNRITFISKAIQR------ 446
Query: 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL 496
+ L ++ N S Y +N D+ LS
Sbjct: 447 ---LTKLQIIYFAN--------SPFTYDNIAVDWEDAN-------SDYAKQYENEELSWS 488
Query: 497 YLSSIQELHLSNV-QLNCIPEDIGNLICLEKLNISHNK----------VYKLPESFANLK 545
L + ++ L N + +P+ + +L L+ LNI+ N+ +L +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 546 SLKILDVSYNKLTMLPD--GFVMLSNLTTFYAQR 577
++I + YN L P + L
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582
Score = 81.5 bits (201), Expect = 3e-16
Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 10/163 (6%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNN----HQDINFVQESMSQKLTNLIVLDLS 293
TV LS+ +I + + ++ + LS+N ++ ++ + L +DL
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736
Query: 294 HNKLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNF-E 349
NKL+ L D L +D+S+N F S P + Q D N
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796
Query: 350 SMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392
P + L++L I N I+ + + L + N
Sbjct: 797 QWPTGIT-TCPSLIQLQIGSNDIRKVDEKLTPQ-LYILDIADN 837
Score = 56.8 bits (137), Expect = 1e-08
Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 29/148 (19%)
Query: 238 TVNLSHQDINFVQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK 296
T++L + + + L L+ +D+S+N + + L + H +
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC---FSSFPTQPLN-SSQLKAFGIRHQR 787
Query: 297 -------LSELPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DIS 344
L + P L +L I N+ + K + DI+
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK------------VDEKLTPQLYILDIA 835
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQI 372
N S+ + + + + +++
Sbjct: 836 DNPNISIDVTSVCPYIEAGMYVLLYDKT 863
Score = 42.2 bits (99), Expect = 5e-04
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 512 NCIPEDIGNLICLEKLNISHNK-VYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNL 570
+ D+ N + L+++ ++P++ L LK+L + T+ F
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372
Query: 571 TTFYAQRKYWMFLTISLL 588
+RK+ + + +
Sbjct: 373 PDMSEERKHRIRMHYKKM 390
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 134 bits (340), Expect = 2e-33
Identities = 76/386 (19%), Positives = 127/386 (32%), Gaps = 63/386 (16%)
Query: 226 LNCCNKQYHDIF-------TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQE 278
+ + LS I V S L L +L+L + +
Sbjct: 9 AFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--PLTIDK 66
Query: 279 SMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPY 336
+ L NL +LDL +K+ L F L EL + L +
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-------DGYF 119
Query: 337 KHSQS----DISHNNFESMPLCLQ-VHFCKLVKLDISHNQIKILH----KPRCTHTLQTF 387
++ ++ D+S N S+ L L +D S NQI ++ +P TL F
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179
Query: 388 SMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLH 447
S+ N W + + + + D N + G FSN IS
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG--------NGWTVDITGNFSNAISK- 230
Query: 448 MQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS-------- 499
S L +I Q+ L + L LS
Sbjct: 231 --------SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282
Query: 500 --------SIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLP-ESFANLKSLKI 549
++ L+L+ ++N I ++ L L+ LN+S+N + +L +F L +
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342
Query: 550 LDVSYNKLTMLPDG-FVMLSNLTTFY 574
+D+ N + ++ D F L L T
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLD 368
Score = 123 bits (310), Expect = 1e-29
Identities = 73/437 (16%), Positives = 149/437 (34%), Gaps = 55/437 (12%)
Query: 162 LQSIEDDIL-----VQLECLHIDNNKAQEYIVSMNVDRTPGFK---LQNNDNDQNTKVTN 213
+ + + L L + N + F+ L+ D N +
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219
Query: 214 AMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKL--TNLTVLDLSHNNHQ 271
I H I +I ++ L +++ LDLSH
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-- 277
Query: 272 DINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVH 329
+ + + + L +L VL+L++NK++++ D F L+ L++S+N ++
Sbjct: 278 -VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE------LY 330
Query: 330 FYVHIPYKHSQS-DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFS 388
D+ N+ + KL LD+ N + +H +
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS---IPDIF 387
Query: 389 MNHNIGMKIPEWFWYQEFLCLKELNMSSTDP--FFEHLPIWLLNHMELKENGVFSNLISL 446
++ N + +P+ + L E + + D F +P +L L
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP----------------HLQIL 431
Query: 447 HM-QNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQEL 504
+ QN + S +++ L N + + LS +Q L
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL------CWDVFEGLSHLQVL 485
Query: 505 HLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG 563
+L++ LN +P + +L L L+++ N++ L + +L+ILD+S N+L
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPD 544
Query: 564 FVMLSNLTTFYAQRKYW 580
+L+ +
Sbjct: 545 V--FVSLSVLDITHNKF 559
Score = 83.3 bits (206), Expect = 9e-17
Identities = 48/320 (15%), Positives = 102/320 (31%), Gaps = 41/320 (12%)
Query: 289 VLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP------------LCLQVH-FYVHIP 335
+ L+++P + L +S N ++ L L + I
Sbjct: 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 336 YKHSQS-------DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT----HTL 384
+ ++ D+ + + L +L + + L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 385 QTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLP---IWLLNHMELKENGVFS 441
++ N + + + LK ++ SS + + L L + +
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN--QIFLVCEHELEPLQGKTLSFFSLAA 183
Query: 442 NLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELP-LSILYLS 499
N + + N + L + L+ S N + +F N + + S++
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVL---EILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 500 SIQELHLSNVQLNCIPEDIGNLIC---LEKLNISHNKVYKL-PESFANLKSLKILDVSYN 555
I + ++ + + L++SH V+ L F LK LK+L+++YN
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
K+ + D F L NL
Sbjct: 301 KINKIADEAFYGLDNLQVLN 320
Score = 75.6 bits (186), Expect = 2e-14
Identities = 39/270 (14%), Positives = 99/270 (36%), Gaps = 20/270 (7%)
Query: 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
I + LS + ++ + ++ LS N ++++ ++ +L +L L+ N
Sbjct: 383 IPDIFLSGNKLV----TLPKINLTANLIHLSENRLENLD--ILYFLLRVPHLQILILNQN 436
Query: 296 KLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS-DISHNNFESM 351
+ S L++L + N + ++ + V H Q ++HN S+
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWET-ELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKE 411
P + H L L ++ N++ +L L+ ++ N + F+ L
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDV----FVSLSV 551
Query: 412 LNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471
L+++ + F + + N + + S VS L ++
Sbjct: 552 LDITH-NKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVS----LFSLSTEG 606
Query: 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSI 501
C + + + + ++ + L++ ++ +
Sbjct: 607 CDEEEVLKSLKFSLFIVCTVTLTLFLMTIL 636
Score = 74.8 bits (184), Expect = 4e-14
Identities = 58/352 (16%), Positives = 121/352 (34%), Gaps = 50/352 (14%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++L I +Q+ + L L LDL N I+F + ++ + LS NKL
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--------IPSIPDIFLSGNKL 393
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL-CLQ 356
LP + +S N E++ + ++F + +P ++ N F S
Sbjct: 394 VTLPKINLT--ANLIHLSENRLENLDI---LYFLLRVP-HLQILILNQNRFSSCSGDQTP 447
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
L +L + N +++ + F + L+ L ++
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCW--DVFEGLSH----------------LQVLYLNH 489
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDI 476
LP + +H+ + L L + + ++ +S N++ L+ S +
Sbjct: 490 NY--LNSLPPGVFSHL--------TALRGLSLNSNR--LTVLSHNDLPANLEILDISRNQ 537
Query: 477 DHRKSQDFVNVLWELPLSILYLSSIQEL----HLSNVQLNCIPEDIGNLICLEKLNISHN 532
+ D L L ++ EL + N I ++ C+ + S
Sbjct: 538 LLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV 597
Query: 533 KVYKL-PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583
++ L E + LK L S + + +++ LT + ++
Sbjct: 598 SLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649
Score = 34.0 bits (78), Expect = 0.17
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 525 EKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
+ ++P+ L + + L +S+N + + F L L
Sbjct: 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQL 52
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 130 bits (329), Expect = 4e-32
Identities = 46/350 (13%), Positives = 112/350 (32%), Gaps = 72/350 (20%)
Query: 247 NFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD-FLN 305
++ + + + ++ + +NN + V+ S+ + + L +L+ +N+L F +
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFP-VETSLQK-MKKLGMLECLYNQLEGKLPAFGS 351
Query: 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPLCLQVHFC- 360
L L++++N +P ++ +HN + +P
Sbjct: 352 EIKLASLNLAYNQITEIPANF---------CGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF 420
+ +D S+N+I S++ + + + + + +N+S+
Sbjct: 403 VMSAIDFSYNEIG--------------SVDGKNFDPLDPTPF--KGINVSSINLSNNQ-- 444
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHMQN-------TAAVMSNVSQLKYLKNIKYLNCS 473
P L + S L S+++ ++ K + ++
Sbjct: 445 ISKFPKELFSTG--------SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496
Query: 474 NDIDHRKSQDFVNVLWELPLSILY--LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH 531
N L +L L + + LS + P N L+ I +
Sbjct: 497 F-----------NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN 545
Query: 532 NKVY-------KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ + PE SL L + N + + + N++
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLD 593
Score = 118 bits (298), Expect = 3e-28
Identities = 47/318 (14%), Positives = 94/318 (29%), Gaps = 77/318 (24%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL---NFKVLKEL 312
L L+L++N I + + + L +HNKL +P+ + V+ +
Sbjct: 351 SEIKLASLNLAYNQ---ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407
Query: 313 DISHNNFESMPLCLQVHFYVHIPYKHS-QS-DISHNNFESMPLCLQVHFCKLVKLDISHN 370
D S+N S+ + S ++S+N P L L +++ N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467
Query: 371 QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLN 430
+ + K + F + L +++ L
Sbjct: 468 MLTEIPKNSLKDENENFKNTYL----------------LTSIDLRFN--KLTKLS----- 504
Query: 431 HMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
++ + L L ++ S N +
Sbjct: 505 -----DDFRATTLPYL---------------------VGIDLSY-----------NSFSK 527
Query: 491 LPLSILYLSSIQELHLSNVQLNC-------IPEDIGNLICLEKLNISHNKVYKLPESFAN 543
P L S+++ + N + PE I L +L I N + K+ E
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-- 585
Query: 544 LKSLKILDVSYNKLTMLP 561
++ +LD+ N +
Sbjct: 586 TPNISVLDIKDNPNISID 603
Score = 110 bits (276), Expect = 2e-25
Identities = 59/377 (15%), Positives = 118/377 (31%), Gaps = 88/377 (23%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQ----------------K 283
+I FV +++ + LT L + ++ N + ++
Sbjct: 189 GQLSNNITFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247
Query: 284 LTNLIVLDLSHNKLS-ELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS 341
L +L +++ + +LP FL ++ ++++ N S Q
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE----------------QL 291
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP----RCTHTLQTFSMNHN-IGMK 396
P+ K+ + I +N +K + L +N + K
Sbjct: 292 KDDWQALADAPVG-----EKIQIIYIGYNNLKTFPVETSLQKMKK-LGMLECLYNQLEGK 345
Query: 397 IPEWFWYQEFLC----LKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN-- 450
+P L LN++ +P + +L +
Sbjct: 346 LPA-------FGSEIKLASLNLAYN--QITEIPANFCGFT--------EQVENLSFAHNK 388
Query: 451 -TAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSN 508
+ N+ K + + ++ S N+I L + ++ ++LSN
Sbjct: 389 LKY--IPNIFDAKSVSVMSAIDFSYNEI----GSVDGKNFDPLDPTPFKGINVSSINLSN 442
Query: 509 VQLNCIP-EDIGNLICLEKLNISHNK--------VYKLPESFANLKSLKILDVSYNKLTM 559
Q++ P E L +N+ N + E+F N L +D+ +NKLT
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
Query: 560 LPDGFVM--LSNLTTFY 574
L D F L L
Sbjct: 503 LSDDFRATTLPYLVGID 519
Score = 100 bits (252), Expect = 2e-22
Identities = 45/333 (13%), Positives = 104/333 (31%), Gaps = 42/333 (12%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL------SELPDFLNFKVL 309
+T L L V +++ Q LT L VL L +
Sbjct: 79 SNGRVTGLSLEGFGASGR--VPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 310 KELDISHNNFE-SMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDIS 368
++ +++ + + + + I+ + + K ++
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDL----IKDCINSDPQQKSIKKSSRITLKDTQIGQL 191
Query: 369 HNQIKILHK--PRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLP 425
N I + K R T L+ F M ++ + E + + ++
Sbjct: 192 SNNITFVSKAVMRLTK-LRQFYMGNSPFVAENIC-----EAWENENSEYAQ---QYKTED 242
Query: 426 IWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDF 484
+ N +L + + N + + LK L ++ +N + N S +
Sbjct: 243 LKWDN---------LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG---ISGEQ 290
Query: 485 VNVLWELPLSILYLSSIQELHLSNVQLNC--IPEDIGNLICLEKLNISHNKVYKLPESFA 542
+ W+ IQ +++ L + + + L L +N++ +F
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350
Query: 543 NLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+ L L+++YN++T +P +
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383
Score = 82.0 bits (203), Expect = 2e-16
Identities = 46/352 (13%), Positives = 108/352 (30%), Gaps = 89/352 (25%)
Query: 240 NLSHQDINFVQES-----MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
+L IN + S+ T + NN I FV +++ + LT L + +
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN---ITFVSKAVMR-LTKLRQFYMGN 215
Query: 295 NKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
+ ++ + + + +++ L +N +
Sbjct: 216 SPFVAENICEAWE-NENSEYA-QQYKTEDL-------------------KWDNLKD---- 250
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L +++ + K+P + ++ +N+
Sbjct: 251 -------LTDVEVYNC---------------------PNLTKLPTFLK--ALPEMQLINV 280
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA-AVMSNVSQLKYLKNIKYLNCS 473
+ + L + V + +++ + L+ +K + L C
Sbjct: 281 ACNR--GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHN 532
N L + + L+L+ Q+ IP + G +E L+ +HN
Sbjct: 339 Y-----------NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387
Query: 533 KVYKLPESFA--NLKSLKILDVSYNKLT--------MLPDGFVMLSNLTTFY 574
K+ +P F ++ + +D SYN++ L N+++
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Score = 75.5 bits (186), Expect = 2e-14
Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 14/165 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-----HQDINFVQESMSQKLTNLIVLDL 292
++NLS+ I+ + + + L+ ++L N + E+ L +DL
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN-TYLLTSIDL 495
Query: 293 SHNKLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNF- 348
NKL++L D L +D+S+N+F P + +Q D N
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555
Query: 349 ESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT-LQTFSMNHN 392
P + L +L I N I+ + + + N
Sbjct: 556 REWPEGIT-LCPSLTQLQIGSNDIRKV--NEKITPNISVLDIKDN 597
Score = 48.9 bits (117), Expect = 4e-06
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELD 313
+LT L + N+ I V E + N+ VLD+ N + +
Sbjct: 564 LCPSLTQLQIGSND---IRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617
Query: 314 ISHNNFESMPLCLQV 328
+ ++ + + C +
Sbjct: 618 LFYDKTQDIRGCDAL 632
Score = 42.0 bits (99), Expect = 5e-04
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 494 SILYLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNISHNKVY-----KLPESFANLKSL 547
S+ + L L + +P+ IG L LE L + + P+ + S
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 548 KILDVSYNKLT 558
+
Sbjct: 136 EQKQKMRMHYQ 146
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 129 bits (327), Expect = 4e-32
Identities = 62/353 (17%), Positives = 122/353 (34%), Gaps = 25/353 (7%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
T+ L+ I + L++L L N + ++ L L L+++HN +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETN---LASLENFPIGHLKTLKELNVAHNLI 136
Query: 298 SELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
F N L+ LD+S N +S+ C + +P + D+S N +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQ----------TFSMNHNIGMKIPEWFWYQ 404
+L KL + +N + C L F N+
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L ++E ++ D + + + + + S ++ + L+ +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV--TIERVKDFSYNFGWQHLELV 312
Query: 465 KNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI---PEDIGNL 521
+ + K F + S + L S++ L LS L+ +
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 522 ICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG--FVMLSNLTT 572
L+ L++S N V + +F L+ L+ LD ++ L + + F+ L NL
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Score = 110 bits (277), Expect = 1e-25
Identities = 69/367 (18%), Positives = 128/367 (34%), Gaps = 57/367 (15%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS + + L VLDLS I +++ Q L++L L L+ N +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
L F L++L N S+ + P H ++ +++HN +S L
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLE---------NFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 354 CLQVHFC-KLVKLDISHNQIKILHK------PRCTHTLQTFSMNHN-IGMKIPEWFWYQE 405
L LD+S N+I+ ++ + + ++ N + P F +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---K 198
Query: 406 FLCLKELNMSS-------TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV 458
+ L +L + + + L ++ + L E NL + + +
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD----KSALEGL 254
Query: 459 SQLKYLKN-IKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSI---------QELHLSN 508
L + + YL+ D N + L + + + Q L L N
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIERVKDFSYNFGWQHLELVN 313
Query: 509 VQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTML---PDGFV 565
+ P L L++L + NK S +L SL+ LD+S N L+
Sbjct: 314 CKFGQFPT--LKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 566 MLSNLTT 572
++L
Sbjct: 371 GTTSLKY 377
Score = 106 bits (266), Expect = 2e-24
Identities = 61/345 (17%), Positives = 116/345 (33%), Gaps = 67/345 (19%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+ ++ +S + L NLT+ + + LTN+ L +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
+ DF + L++ + F P + N + +V
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL--------TFTSNKGGNAFS--EVDL 346
Query: 360 CKLVKLDISHNQIKILHKPRCTHT----LQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L LD+S N + + L+ ++ N +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN--------------------GVI 386
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA-AVMSNVSQLKYLKNIKYLNCSN 474
+ F L L L Q++ MS S L+N+ YL+ S+
Sbjct: 387 TMSSNFLGLE----------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 475 DIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQL--NCIPEDIGNLICLEKLNISH 531
I LSS++ L ++ N +P+ L L L++S
Sbjct: 431 -----------THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 532 NKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
++ +L + F +L SL++L+++ N+L +PDG F L++L +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524
Score = 95.2 bits (237), Expect = 1e-20
Identities = 67/400 (16%), Positives = 130/400 (32%), Gaps = 90/400 (22%)
Query: 164 SIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELID 223
++ + L L + E+ N+++ L+ N + ++
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL---CNLTIEEFRLAYLDYYL 271
Query: 224 TELNCCNKQYHDIFTVNLSHQDINFVQE-SMSQKLTNLTVLDLSHNNHQDINFVQESMSQ 282
++ ++ + +L I V++ S + +L +++ +
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL--------- 322
Query: 283 KLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS- 341
KL +L L + NK ++ L+ LD+S N C Q F +
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF----GTTSLKYL 378
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
D+S N +M +L LD H+ +K + + +L+
Sbjct: 379 DLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRN--------------- 422
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L L++S H + NG+F+ L SL
Sbjct: 423 -------LIYLDISH-------------THTRVAFNGIFNGLSSL--------------- 447
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWE--LPLSILYLSSIQELHLSNVQLNCIPEDI- 518
+ L + N E LP L ++ L LS QL +
Sbjct: 448 ------EVLKMAG-----------NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 519 GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKL 557
+L L+ LN++ N++ +P+ F L SL+ + + N
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 82.5 bits (204), Expect = 9e-17
Identities = 62/357 (17%), Positives = 107/357 (29%), Gaps = 81/357 (22%)
Query: 170 LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQN--TKVTNAMDIAMELIDTELN 227
L L Y+ + + + +V + +N
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313
Query: 228 CCNKQYHDIFTVNLSHQDINFVQESMS---QKLTNLTVLDLSHNNHQDINFVQESMSQKL 284
C Q+ + +L + + L +L LDLS N +S
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGT 372
Query: 285 TNLIVLDLSHNKLSELP-DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS-D 342
T+L LDLS N + + +FL + L+ LD H+N + M F V + ++ D
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-----EFSVFLSLRNLIYLD 427
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW 402
ISH + + L L ++ N + P L+
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---------------- 471
Query: 403 YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
L L++S +E F++L SL
Sbjct: 472 ------LTFLDLSQ-------------CQLEQLSPTAFNSLSSL---------------- 496
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI 518
+ LN ++ N L +P I L+S+Q++ L +C I
Sbjct: 497 -----QVLNMAS-----------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537
Score = 57.0 bits (138), Expect = 1e-08
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLP-ESFANLKSLKILDVSYNK 556
S + L LS L + + L+ L++S ++ + ++ +L L L ++ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 557 LTMLPDG-FVMLSNLTT 572
+ L G F LS+L
Sbjct: 88 IQSLALGAFSGLSSLQK 104
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 125 bits (315), Expect = 6e-32
Identities = 60/355 (16%), Positives = 113/355 (31%), Gaps = 76/355 (21%)
Query: 226 LNCCN--KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQ- 282
+ YHD+ + H + + + + + N + + + + +
Sbjct: 19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDA 78
Query: 283 KLTNLIVLDLSHNKLSELPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS 341
+ L+L L + PD L+ + I +P +Q
Sbjct: 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ-------------- 124
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
F L L ++ N ++ L +I
Sbjct: 125 ----------------QFAGLETLTLARNPLRALPA--------------SIA------- 147
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV-SQ 460
L+EL++ + P LP L + E+ NL SL ++ T + ++ +
Sbjct: 148 ---SLNRLRELSIRAC-PELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IRSLPAS 201
Query: 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNV-QLNCIPEDIG 519
+ L+N+K L N + L L +I +L ++EL L L P G
Sbjct: 202 IANLQNLKSLKIRN-----------SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 520 NLICLEKLNISH-NKVYKLPESFANLKSLKILDVSYN-KLTMLPDGFVMLSNLTT 572
L++L + + + LP L L+ LD+ L+ LP L
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
Score = 87.3 bits (217), Expect = 6e-19
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 11/145 (7%)
Query: 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLN---CSNDIDHRKSQDFV------NVLWEL 491
S +L+ Q + A+ L + + + S + L
Sbjct: 12 SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKAT 71
Query: 492 PLSILYLSSI--QELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKI 549
+ + L L +V L P+ L L+ + I + +LP++ L+
Sbjct: 72 ADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLET 131
Query: 550 LDVSYNKLTMLPDGFVMLSNLTTFY 574
L ++ N L LP L+ L
Sbjct: 132 LTLARNPLRALPASIASLNRLRELS 156
Score = 79.6 bits (197), Expect = 2e-16
Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 21/121 (17%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLIC 523
L + L + P LS +Q + + L +P+ +
Sbjct: 80 QPGRVALELRS-----------VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG 128
Query: 524 LEKLNISHNKVYKLPESFANLKSLKILDVSY-NKLTMLPDGF---------VMLSNLTTF 573
LE L ++ N + LP S A+L L+ L + +LT LP+ L NL +
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 574 Y 574
Sbjct: 189 R 189
Score = 36.8 bits (86), Expect = 0.016
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL 304
+LT L LDL +++ + ++Q L ++ + + ++L
Sbjct: 275 RLTQLEKLDLRGCV--NLSRLPSLIAQ-LPANCIILVPPHLQAQLDQHR 320
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 124 bits (313), Expect = 9e-32
Identities = 48/358 (13%), Positives = 119/358 (33%), Gaps = 88/358 (24%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
++ + S+ Q N+ LDLS N ++ + + T L +L+LS N L E
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
D + L+ LD+++N + + + + ++NN +
Sbjct: 73 TLDLESLSTLRTLDLNNNYVQELLVGPSIE----------TLHAANNNISRVSCSR---G 119
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419
+ +++N+I +L ++ L++
Sbjct: 120 QGKKNIYLANNKITMLRD-------LDEGCRSR----------------VQYLDLKL--- 153
Query: 420 FFEHLPIWLLNHM-ELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478
N + + + ++ +L ++LN
Sbjct: 154 ----------NEIDTVNFAELAASSDTL---------------------EHLNLQY---- 178
Query: 479 RKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP 538
N ++++ ++ + ++ L LS+ +L + + + + +++ +NK+ +
Sbjct: 179 -------NFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230
Query: 539 ESFANLKSLKILDVSYNKLTM--LPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594
++ ++L+ D+ N L D F + T Q + C + L
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
Score = 100 bits (250), Expect = 2e-23
Identities = 48/340 (14%), Positives = 103/340 (30%), Gaps = 93/340 (27%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++LS ++ + + T L +L+LS N + + + L+ L LDL++N +
Sbjct: 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-----ESLSTLRTLDLNNNYV 92
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
EL + ++ L ++NN + Q +++N +
Sbjct: 93 QELLVGPS---IETLHAANNNISR------------VSCSRGQGKKNIYLANNKITMLRD 137
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413
+ ++ LD+ N+I ++ + T L+ LN
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT----------------------LEHLN 175
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473
+ N I +V +K L+ S
Sbjct: 176 LQ-------------------------YNFI-----------YDVKGQVVFAKLKTLDLS 199
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK 533
+ N L + + + + L N +L I + + LE ++ N
Sbjct: 200 S-----------NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248
Query: 534 VYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTF 573
+ K+ ++ V+ + L + T
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
Score = 62.3 bits (152), Expect = 9e-11
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIG-NLICLEKLNISHNKVYKLP-ESFANLKSLK 548
+ + + +++ L + + +++L++S N + ++ A L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 549 ILDVSYNKLTMLPDGFVMLSNLTTFY 574
+L++S N L D LS L T
Sbjct: 62 LLNLSSNVLYETLD-LESLSTLRTLD 86
Score = 51.5 bits (124), Expect = 3e-07
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 45/156 (28%)
Query: 170 LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCC 229
+++ L + N+ I ++N L L
Sbjct: 143 RSRVQYLDLKLNE----IDTVNFAELAA-SSDT------------------L--EHL--- 174
Query: 230 NKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIV 289
NL + I V+ + L LDLS N + F+ +
Sbjct: 175 ----------NLQYNFIYDVKGQVV--FAKLKTLDLSSNK---LAFMGPEFQS-AAGVTW 218
Query: 290 LDLSHNKLSELPD-FLNFKVLKELDISHNNFESMPL 324
+ L +NKL + + L+ D+ N F L
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 123 bits (311), Expect = 7e-31
Identities = 59/353 (16%), Positives = 126/353 (35%), Gaps = 71/353 (20%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
V++ Q + L N ++ ++ + + ++ + +L+L+ ++
Sbjct: 26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQIE 82
Query: 299 ELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMP 352
E+ F +++L + N +P + +++ + N+ S+P
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---------FQNVPLLTVLVLERNDLSSLP 133
Query: 353 LCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
+ + KL L +S+N ++ + TF + L+ L
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIED-------DTFQATTS----------------LQNL 170
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
+SS N + + + +L ++ +S L ++ L+
Sbjct: 171 QLSS-------------NRLTHVDLSLIPSLFHANVSYN-----LLSTLAIPIAVEELDA 212
Query: 473 S-NDIDHRKSQDFVNVLWELPLS---------ILYLSSIQELHLSNVQLNCIPEDI-GNL 521
S N I+ + V L L L +L + E+ LS +L I +
Sbjct: 213 SHNSINVVRGPVNVE-LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271
Query: 522 ICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
LE+L IS+N++ L + +LK+LD+S+N L + L Y
Sbjct: 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324
Score = 123 bits (310), Expect = 1e-30
Identities = 61/338 (18%), Positives = 121/338 (35%), Gaps = 69/338 (20%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+NL+ I + + L + N I ++ + Q + L VL L N L
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA---IRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S LP F N L L +S+NN E I + F++
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLER---------------------IEDDTFQATT--- 165
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L L +S N++ + +L ++++N+ + + ++EL+ S
Sbjct: 166 -----SLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIP------IAVEELDAS 213
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
N + + V L L +Q+ +++ + L + ++ S
Sbjct: 214 H-------------NSINVVRGPVNVELTILKLQHNN--LTDTAWLLNYPGLVEVDLSY- 257
Query: 476 IDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534
N L ++ + ++ L++SN +L + + L+ L++SHN +
Sbjct: 258 ----------NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307
Query: 535 YKLPESFANLKSLKILDVSYNKLTMLP-DGFVMLSNLT 571
+ + L+ L + +N + L L NLT
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 345
Score = 102 bits (257), Expect = 8e-24
Identities = 54/322 (16%), Positives = 115/322 (35%), Gaps = 45/322 (13%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDI 314
L V H + Q + L N ++ ++ + +LP +F+ ++ L++
Sbjct: 17 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQS-DISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373
+ E + F Q + N +P + + L L + N +
Sbjct: 77 NDLQIEEID---TYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130
Query: 374 ILHKP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNH 431
L + T L T SM++N +I + + Q L+ L +SS N
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSS-------------NR 176
Query: 432 MELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL 491
+ + + +L ++ +S L ++ L+ S+ N + +
Sbjct: 177 LTHVDLSLIPSLFHANVSYN-----LLSTLAIPIAVEELDASH-----------NSINVV 220
Query: 492 PLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKIL 550
+ + L L + L + N L ++++S+N++ K+ F ++ L+ L
Sbjct: 221 RGPVN--VELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277
Query: 551 DVSYNKLTMLPDGFVMLSNLTT 572
+S N+L L + L
Sbjct: 278 YISNNRLVALNLYGQPIPTLKV 299
Score = 62.8 bits (153), Expect = 1e-10
Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 97/293 (33%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-------------HQDINFVQESMSQKL 284
T+++S+ ++ +++ Q T+L L LS N H ++++ S
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
+ LD SHN ++ + + L L + HNN
Sbjct: 205 IAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTA--------------------- 242
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPEWFW 402
+ P LV++D+S+N+++ + L+ +++N + + +
Sbjct: 243 --WLLNYP--------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292
Query: 403 YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
L K L++S NH+ E
Sbjct: 293 PIPTL--KVLDLSH-------------NHLLHVERNQPQ--------------------- 316
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIP 515
++ L + N + L LS +++ L LS+ +C
Sbjct: 317 -FDRLENLYLDH-----------NSIVTLKLSTH--HTLKNLTLSHNDWDCNS 355
Score = 56.2 bits (136), Expect = 1e-08
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+S+ + + + L VLDLSHN+ + V+ + Q L L L HN +
Sbjct: 278 YISNNRLVALNLYGQP-IPTLKVLDLSHNH---LLHVERNQPQ-FDRLENLYLDHNSIVT 332
Query: 300 LPDFLNFKVLKELDISHNNFESMPL 324
L LK L +SHN+++ L
Sbjct: 333 LK-LSTHHTLKNLTLSHNDWDCNSL 356
Score = 42.7 bits (101), Expect = 2e-04
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++LSH + V+ + Q L L L HN+ + L L LSHN
Sbjct: 299 VLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTLKL------STHHTLKNLTLSHNDW 351
Query: 298 SELPDFLNFKVLKELDISHNN 318
F+ + + +
Sbjct: 352 DCNSLRALFRNVARPAVDDAD 372
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 123 bits (311), Expect = 2e-30
Identities = 77/357 (21%), Positives = 138/357 (38%), Gaps = 71/357 (19%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDI-------------NFVQESMSQKL 284
+ L++ ++ + E +L L S N+ ++ N +++S
Sbjct: 75 ELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS-DI 343
L L +S+N+L +LP+ N LK +D+ +N+ + +P +
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP----------PSLEFIAA 180
Query: 344 SHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWY 403
+N E +P L + +N +K L P +L++ +NI ++PE
Sbjct: 181 GNNQLEELPELQN--LPFLTAIYADNNSLKKL--PDLPLSLESIVAGNNILEELPE---L 233
Query: 404 QEFLCLKELNMSSTDPFFEHLPIWL--LNHMELKEN------GVFSNLISLHMQNTAAVM 455
Q L + + + LP L + +++N + +L L +
Sbjct: 234 QNLPFLTTIYADNNL--LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN---- 287
Query: 456 SNVSQLKYL-KNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI 514
S L L N+ YLN S+ N + L S++EL++SN +L +
Sbjct: 288 -IFSGLSELPPNLYYLNASS-----------NEIRSLCDL---PPSLEELNVSNNKLIEL 332
Query: 515 PEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
P LE+L S N + ++PE NLK L V YN L PD + +L
Sbjct: 333 PALPPR---LERLIASFNHLAEVPELPQNLKQ---LHVEYNPLREFPDIPESVEDLR 383
Score = 99.3 bits (248), Expect = 2e-22
Identities = 67/353 (18%), Positives = 117/353 (33%), Gaps = 80/353 (22%)
Query: 256 KLTNLTVLDLSHNNHQDI----------NFVQESMSQKLTNLIVLDLSHNKLSELPDFLN 305
+ + T + + + V L+L++ LS LP+
Sbjct: 32 NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPP 91
Query: 306 FKVLKELDISHNNFESMP-----------LCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
L+ L S N+ +P + +P +S+N E +P
Sbjct: 92 H--LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 149
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L +D+ +N +K L P +L+ + +N ++PE Q L +
Sbjct: 150 QNSS--FLKIIDVDNNSLKKL--PDLPPSLEFIAAGNNQLEELPEL---QNLPFLTAIYA 202
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ + LP +L S+ N + + +L+ L + + N
Sbjct: 203 DNNS--LKKLPDLP------------LSLESIVAGNNI--LEELPELQNLPFLTTIYADN 246
Query: 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534
N+L LP S++ L++ + L +PE + L L++S N
Sbjct: 247 -----------NLLKTLPDLP---PSLEALNVRDNYLTDLPELPQS---LTFLDVSENIF 289
Query: 535 YKLPESFANLK-----------------SLKILDVSYNKLTMLPDGFVMLSNL 570
L E NL SL+ L+VS NKL LP L L
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL 342
Score = 97.4 bits (243), Expect = 9e-22
Identities = 54/311 (17%), Positives = 106/311 (34%), Gaps = 74/311 (23%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
L LT + +N+ + + +L + +N L ELP+ N L +
Sbjct: 193 NLPFLTAIYADNNS-------LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
+N +++P ++ N +P Q L LD+S N L
Sbjct: 246 NNLLKTLPDLPP---------SLEALNVRDNYLTDLPELPQ----SLTFLDVSENIFSGL 292
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
L + + N + + L+ELN+S+ LP
Sbjct: 293 --SELPPNLYYLNASSNEIRSLCD-----LPPSLEELNVSNN--KLIELPALP------- 336
Query: 436 ENGVFSNLISLHMQNTAAVMSNVSQLKYL----KNIKYLNCSNDIDHRKSQDFVNVLWEL 491
L L + L + +N+K L+ N L E
Sbjct: 337 -----PRLERLIASF--------NHLAEVPELPQNLKQLHVEY-----------NPLREF 372
Query: 492 PLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILD 551
P S+++L +++ L +PE NL ++L++ N + + P+ +S++ L
Sbjct: 373 PDIP---ESVEDLRMNS-HLAEVPELPQNL---KQLHVETNPLREFPDI---PESVEDLR 422
Query: 552 VSYNKLTMLPD 562
++ ++ +
Sbjct: 423 MNSERVVDPYE 433
Score = 92.0 bits (229), Expect = 6e-20
Identities = 58/295 (19%), Positives = 102/295 (34%), Gaps = 59/295 (20%)
Query: 284 LTNLIVLDLSHNKLSELPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSD 342
T L + L+E+P N K E + + +E +
Sbjct: 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP-------------GNGE 56
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW 402
+ CL +L++++ + L P L++ + N ++PE
Sbjct: 57 QREMAVSRLRDCLDRQ---AHELELNNLGLSSL--PELPPHLESLVASCNSLTELPE--- 108
Query: 403 YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
LK L + + N L + + L L + N + + +L+
Sbjct: 109 --LPQSLKSLLVDN------------NNLKALSD--LPPLLEYLGVSNNQ--LEKLPELQ 150
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
+K ++ N N L +LP S++ + N QL +PE + NL
Sbjct: 151 NSSFLKIIDVDN-----------NSLKKLPDL---PPSLEFIAAGNNQLEELPE-LQNLP 195
Query: 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQR 577
L + +N + KLP+ SL+ + N L LP+ L LTT YA
Sbjct: 196 FLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPE-LQNLPFLTTIYADN 246
Score = 48.1 bits (115), Expect = 5e-06
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 14/94 (14%)
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK-LPESFANL----- 544
+ + + +QE + L +P + N+ + + ++ + P
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 545 --------KSLKILDVSYNKLTMLPDGFVMLSNL 570
+ L+++ L+ LP+ L +L
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPPHLESL 96
Score = 45.8 bits (109), Expect = 3e-05
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 251 ESMSQKLTNLTVLDLSHNNHQDI------------NFVQESMSQKLTNLIVLDLSHNKLS 298
+ + NL L + +N ++ N + + NL L + N L
Sbjct: 350 AEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409
Query: 299 ELPDFLNFKVLKELDISHNNFESMP 323
E PD +++L ++
Sbjct: 410 EFPDIPES--VEDLRMNSERVVDPY 432
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 125 bits (314), Expect = 3e-30
Identities = 67/362 (18%), Positives = 117/362 (32%), Gaps = 77/362 (21%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+N+ + + + + ++T L + NN + L L++S N+L
Sbjct: 44 VLNVGESGLTTLPDCL---PAHITTLVIPDNNLTSL-------PALPPELRTLEVSGNQL 93
Query: 298 SELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ LP L + ++P L + I N S+P
Sbjct: 94 TSLPVLPPGLLELSIFSNPLTHLPALPSGLC------------KLWIFGNQLTSLP---- 137
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
V L +L +S NQ+ L P L +N +P L+EL++S
Sbjct: 138 VLPPGLQELSVSDNQLASL--PALPSELCKLWAYNNQLTSLPM-----LPSGLQELSVSD 190
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL----KNIKYLNC 472
LP S L L N ++L L +K L
Sbjct: 191 NQ--LASLPTLP------------SELYKLWAYN--------NRLTSLPALPSGLKELIV 228
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHN 532
S N L LP+ S ++EL +S +L +P L L++ N
Sbjct: 229 SG-----------NRLTSLPVLP---SELKELMVSGNRLTSLPMLPSGL---LSLSVYRN 271
Query: 533 KVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLM 592
++ +LPES +L S +++ N L+ + Y+ + +
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331
Query: 593 GL 594
Sbjct: 332 RA 333
Score = 72.2 bits (177), Expect = 2e-13
Identities = 23/106 (21%), Positives = 32/106 (30%), Gaps = 16/106 (15%)
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
LN + L LP + + I L + + L +P L
Sbjct: 38 LNNGNAVLNVGE-----------SGLTTLPDCLP--AHITTLVIPDNNLTSLPALPPEL- 83
Query: 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLS 568
L +S N++ LP L L I L LP G L
Sbjct: 84 --RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLW 127
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 123 bits (310), Expect = 1e-29
Identities = 72/435 (16%), Positives = 135/435 (31%), Gaps = 98/435 (22%)
Query: 162 LQSIEDDIL--VQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219
+ I+D ++L L + N I+ + G + + N
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252
Query: 220 ELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDI------ 273
+++ + I L++ + L N++ + L+ + + +
Sbjct: 253 SIMEGLCDV------TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH 306
Query: 274 ----------NFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
+++ + L L L L+ NK S + L LD+S N
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 366
Query: 324 LCLQVHFYVHIPYKHSQS-DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH 382
C + D+S N M +L LD H+ +K + +
Sbjct: 367 CCSYSDL----GTNSLRHLDLSFNGAIIMSANFM-GLEELQHLDFQHSTLKRVTEFSAFL 421
Query: 383 TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSN 442
+L+ L L++S + ++ +G+F
Sbjct: 422 SLEK----------------------LLYLDISY-------------TNTKIDFDGIFLG 446
Query: 443 LISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQ 502
L + L L + ++ D+ S F N +++
Sbjct: 447 L---------------TSLNTL----KMAGNSFKDNTLSNVFAN-----------TTNLT 476
Query: 503 ELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTML 560
L LS QL I + L L+ LN+SHN + L S + L SL LD S+N++
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536
Query: 561 PDG-FVMLSNLTTFY 574
+L F
Sbjct: 537 KGILQHFPKSLAFFN 551
Score = 118 bits (299), Expect = 2e-28
Identities = 62/371 (16%), Positives = 116/371 (31%), Gaps = 71/371 (19%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS + ++ + L LDLS I +++ L +L L L+ N +
Sbjct: 38 DLSFNPLKILKSYSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
F L+ L S+ P + +++HN S
Sbjct: 95 FSPGSFSGLTSLENLVAVETKLASLE---------SFPIGQLITLKKLNVAHNFIHSCK- 144
Query: 354 CLQVHFC---KLVKLDISHNQIKILHK------PRCTHTLQTFSMNHN-IGMKIPEWFWY 403
L +F LV +D+S+N I+ + + M+ N I + F
Sbjct: 145 -LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-- 201
Query: 404 QEFLCLKELNMSS-------TDPFFEHLP-----------IWLLNHMELKENGVFSNLIS 445
+ + L EL + ++L ++E+ E + L
Sbjct: 202 -QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260
Query: 446 LHMQ-----NTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSS 500
+ + T ++ + L N+ ++ + + L +
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG-----------VSIKYLE-DVPKHFK 308
Query: 501 IQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTML 560
Q L + QL P +L L+ L ++ NK + L SL LD+S N L+
Sbjct: 309 WQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFS 365
Query: 561 PDGFVMLSNLT 571
Sbjct: 366 GCCSYSDLGTN 376
Score = 115 bits (290), Expect = 3e-27
Identities = 56/357 (15%), Positives = 112/357 (31%), Gaps = 59/357 (16%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L+ I LT+L L + ++ +L L L+++HN +
Sbjct: 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETK---LASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 300 LPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
F N L +D+S+N ++ I+ N+ + L+
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQT---------------------ITVNDLQF----LR 177
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTH--TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
+ + LD+S N I + + L ++ N Q L +
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQ-DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQ-----NTAAVMSNVSQLKYLKNIKY 469
++E+ E + L + + T ++ + L N+
Sbjct: 237 I-------LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289
Query: 470 LNCS-NDIDHRKSQDFVNVLWELPLSILYLSSI--------QELHLSNVQLNCIPEDIGN 520
++ + I + + L + L + L L+ + + I
Sbjct: 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS-ISFKKVA 348
Query: 521 LICLEKLNISHNKVYKLPE---SFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L L L++S N + S SL+ LD+S+N ++ F+ L L
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405
Score = 77.0 bits (190), Expect = 5e-15
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 17/139 (12%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
++S+ + + + LT+L L ++ N+ + ++ TNL LDLS +L +
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSF--KDNTLSNVFANTTNLTFLDLSKCQLEQ 487
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
+ F L+ L++SHNN + Y S D S N E+
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSH---------YNQLYSLSTLDCSFNRIETSKG 538
Query: 354 CLQVHFCKLVKLDISHNQI 372
LQ L ++++N +
Sbjct: 539 ILQHFPKSLAFFNLTNNSV 557
Score = 75.5 bits (186), Expect = 2e-14
Identities = 53/328 (16%), Positives = 97/328 (29%), Gaps = 97/328 (29%)
Query: 240 NLSHQDINFVQESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+LS ++F +L LDLS N + + L L LD H+ L
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM----SANFMGLEELQHLDFQHSTL 411
Query: 298 SELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
+ + FL+ + L LDIS+ N + F +
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKI---------------------DFDGIFLGLT-- 448
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRC---THTLQTFSMNHN-IGMKIPEWFWYQEFLCLK 410
L L ++ N K T L ++ + F L+
Sbjct: 449 ------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF--DTLHRLQ 500
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
LNMS N++ ++ ++ L SL L
Sbjct: 501 LLNMSH-------------NNLLFLDSSHYNQLYSL---------------------STL 526
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNI 529
+CS N + + + S+ +L+N + CI E L+ +
Sbjct: 527 DCSF-----------NRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKF---LQWVKE 572
Query: 530 SHNKVYKLPE----SFANLKSLKILDVS 553
+ + + + + + +LD +
Sbjct: 573 QKQFLVNVEQMTCATPVEMNTSLVLDFN 600
Score = 68.5 bits (168), Expect = 3e-12
Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 76/235 (32%)
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
+P + +D+S N +KIL +FS
Sbjct: 17 QCMDQKLSKVPDDI---PSSTKNIDLSFNPLKILKS-------YSFSNFSE--------- 57
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L+ L++S +E E+ + L
Sbjct: 58 -------LQWLDLSR-------------CEIETIEDKAWHGL------------------ 79
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPED-IG 519
++ L + N + L+S++ L +L + IG
Sbjct: 80 ---HHLSNLILTG-----------NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125
Query: 520 NLICLEKLNISHNKVY--KLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLT 571
LI L+KLN++HN ++ KLP F+NL +L +D+SYN + + L
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180
Score = 49.3 bits (118), Expect = 3e-06
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+N+SH ++ F+ S +L +L+ LD S N I + + +L +L++N +
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR---IETSKGILQHFPKSLAFFNLTNNSV 557
Query: 298 S---ELPDFLNF 306
+ E FL +
Sbjct: 558 ACICEHQKFLQW 569
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 120 bits (303), Expect = 4e-29
Identities = 61/355 (17%), Positives = 130/355 (36%), Gaps = 39/355 (10%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS I ++ + NL VL L + IN ++ L +L LDLS N LS
Sbjct: 32 DLSFNKITYIGHGDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDNHLSS 88
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHF-----YVHIPYKHSQSDISHNNFESMP 352
L F LK L++ N ++++ + + I + S+I +F +
Sbjct: 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148
Query: 353 LCLQVHFCKLVKLDISHNQIKILHK--PRCTHTLQTFSMNHN----IGMKIPEWFWYQEF 406
L +L+I ++ + + +++ + + + +
Sbjct: 149 --------SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200
Query: 407 LCLKELNMSSTDPFFEHLPIWLLNHMELK-ENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465
L L++ N++ + +L V ++ + + +S++++
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICL 524
LN D + +S L + +I+ LH+ L + L +
Sbjct: 261 C--TLNGLGDFNPSESDVVSE------LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312
Query: 525 EKLNISHNKVYKLP-ESFANLKSLKILDVSYNKLTMLPDG----FVMLSNLTTFY 574
+++ + ++KV+ +P +LKSL+ LD+S N + +L T
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367
Score = 109 bits (274), Expect = 2e-25
Identities = 61/410 (14%), Positives = 124/410 (30%), Gaps = 97/410 (23%)
Query: 160 HELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAM 219
L I DIL + L + + + S ++ + + + +
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 220 ELIDTELNCCNKQYHDI---FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFV 276
+L+ L ++ D + + + + V E + + L + + +
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY---LFYD 301
Query: 277 QESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHI 334
++ L + + + ++K+ +P + K L+ LD+S N L
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK---- 357
Query: 335 PYKHSQS----DISHNNFESMPLCLQV--HFCKLVKLDISHNQIKILHKPRCTHTLQTFS 388
S +S N+ SM ++ L LDIS N + +
Sbjct: 358 --GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD--------SCQ 407
Query: 389 MNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHM 448
++ LN+SS + + + + L L +
Sbjct: 408 WPEK----------------MRFLNLSS-------------TGIRVVKTCIPQTLEVLDV 438
Query: 449 QNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSN 508
N N L L L +QEL++S
Sbjct: 439 SN-----------------------------------NNLDSFSLF---LPRLQELYISR 460
Query: 509 VQLNCIPEDIGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKL 557
+L +P+ L + IS N++ +P+ F L SL+ + + N
Sbjct: 461 NKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 107 bits (269), Expect = 8e-25
Identities = 46/355 (12%), Positives = 107/355 (30%), Gaps = 45/355 (12%)
Query: 240 NLSHQDINFVQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
NL + + LTNL L + + + ++ LT+L L++ L
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--FSEIRRIDFAGLTSLNELEIKALSLR 161
Query: 299 ELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ + + L + + + ++ N
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS-----SVRYLELRDTNLARFQFSPL 216
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
+ + +L L+ + F L + N S
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL---SEVEFDDCTLNGLGDFNPSE 273
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL--------------- 461
+D L + + ++ + + + +++ V ++
Sbjct: 274 SD-VVSELG--KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
Query: 462 KYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIG- 519
++LK++++L+ S N + V + S+Q L LS L + +
Sbjct: 331 QHLKSLEFLDLSENLM--------VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382
Query: 520 --NLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
L L L+IS N + +P+S + ++ L++S + ++ L
Sbjct: 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEV 435
Score = 104 bits (261), Expect = 1e-23
Identities = 59/372 (15%), Positives = 125/372 (33%), Gaps = 58/372 (15%)
Query: 238 TVNLSH-QDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK 296
T+ + + + + ++ LT+L L++ + + Q + + ++ L L ++
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALS---LRNYQSQSLKSIRDIHHLTLHLSE 183
Query: 297 LSELPD--FLNFKVLKELDISHNNFESMP---LCLQVHFYVHIPYKHSQSDISHNNFESM 351
+ L + ++ L++ N L + S ++ +F +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Query: 352 PLCLQ--VHFCKLVKLDISHNQIKILHKPRCTH----------TLQTFSMNHNIGMKIPE 399
L+ + ++ D + N + + T++ +
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303
Query: 400 WFWYQEFLCLKELNMSS------TDPFFEHLP----IWL----LNHMELKENGVFSNLIS 445
Y +K + + + F +HL + L + LK + S
Sbjct: 304 TV-YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362
Query: 446 LHM----QNTAAVMSNVSQL-KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSS 500
L QN M ++ LKN+ L+ S N +P S +
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR-----------NTFHPMPDSCQWPEK 411
Query: 501 IQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTML 560
++ L+LS+ + + I LE L++S+N + L L+ L +S NKL L
Sbjct: 412 MRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTL 466
Query: 561 PDGFVMLSNLTT 572
PD + L
Sbjct: 467 PDA-SLFPVLLV 477
Score = 95.2 bits (237), Expect = 7e-21
Identities = 50/286 (17%), Positives = 88/286 (30%), Gaps = 35/286 (12%)
Query: 135 ITNNSVEMDENTVKTEALSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDR 194
+ + + + R + +D L L + + + +
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET-- 285
Query: 195 TPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMS 254
++ Q + +L+ + + + + + V S S
Sbjct: 286 ---VTIRRLHIPQF------------YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD----FLNFKVLK 310
Q L +L LDLS N + + +L L LS N L + L K L
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390
Query: 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHN 370
LDIS N F MP P K ++S + C+ L LD+S+N
Sbjct: 391 SLDISRNTFHPMP------DSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNN 441
Query: 371 QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
+ LQ ++ N +P+ F L + +S
Sbjct: 442 NLDSF--SLFLPRLQELYISRNKLKTLPDASL---FPVLLVMKISR 482
Score = 91.7 bits (228), Expect = 1e-19
Identities = 51/346 (14%), Positives = 111/346 (32%), Gaps = 47/346 (13%)
Query: 260 LTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDISHN 317
V D + I S + LDLS NK++ + D L+ L + +
Sbjct: 7 SGVCDGRSRSFTSIP------SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 318 NFESMPLCLQVHFYVHIPYKHSQS-DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
+ + + D+S N+ S+ L L++ N + L
Sbjct: 61 RINT------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114
Query: 377 KPRCTH---TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS------TDPFFEHLPIW 427
LQT + + + L EL + + + +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD- 173
Query: 428 LLNHMELKENG----------VFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDID 477
++H+ L + + S++ L +++T S L + +
Sbjct: 174 -IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 478 HRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLIC---------LEKLN 528
+ + N L +L IL LS ++ + L +++ + +L+
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 529 ISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
I ++ ++ L+ +K + V +K+ ++P L +L
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338
Score = 40.9 bits (96), Expect = 0.001
Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ +S + + ++ L V+ +S N + V + + +LT+L + L N
Sbjct: 455 ELYISRNKLKTLPDASL--FPVLLVMKISRNQ---LKSVPDGIFDRLTSLQKIWLHTNPW 509
Query: 298 SELPDFLNF 306
+++
Sbjct: 510 DCSCPRIDY 518
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 120 bits (303), Expect = 6e-29
Identities = 71/346 (20%), Positives = 118/346 (34%), Gaps = 43/346 (12%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
S + +Q + +L NLT LDL+ I ++ E Q L L L+ N L
Sbjct: 39 EFSFNVLPTIQNTTFSRLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLTANPLIF 95
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
+ + K LK L S+ IP + ++ + N+ S+ L
Sbjct: 96 MAETALSGPKALKHLFFIQTGISSID---------FIPLHNQKTLESLYLGSNHISSIKL 146
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCTH----TLQTFSMNHNIGMKIPEWFWYQEFLCL 409
KL LD +N I L K + T + ++N N I + +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVF 204
Query: 410 KELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKY 469
+ LN T + ++ G F ++ + ++ +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI----N 260
Query: 470 LNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNI 529
L + + S F S +QEL L+ L+ +P + L L+KL +
Sbjct: 261 LQ-KHYFFNISSNTFHC-----------FSGLQELDLTATHLSELPSGLVGLSTLKKLVL 308
Query: 530 SHNKVYKLPE-SFANLKSLKILDVSYNKL--TMLPDGFVMLSNLTT 572
S NK L + S +N SL L + N + L NL
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354
Score = 103 bits (259), Expect = 2e-23
Identities = 60/347 (17%), Positives = 125/347 (36%), Gaps = 85/347 (24%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++L+ ++ + + L+ L L LS N + + + +L L + N
Sbjct: 282 ELDLTATHLSELPSGLV-GLSTLKKLVLSANK---FENLCQISASNFPSLTHLSIKGNTK 337
Query: 298 S-ELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFES 350
EL N + L+ELD+SH++ E+ C ++ ++S+N S
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQL-------RNLSHLQSLNLSYNEPLS 390
Query: 351 MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLK 410
+ +L LD++ ++K+ F H LK
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQS------PFQNLHL----------------LK 428
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
LN+S + +++ +F L +L ++L
Sbjct: 429 VLNLSH-------------SLLDISSEQLFDGLPAL---------------------QHL 454
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNI 529
N F + S+ L ++ L LS L+ I + +L + +++
Sbjct: 455 NLQG-------NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 530 SHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
SHN++ E+ ++LK + L+++ N ++++ +LS T
Sbjct: 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553
Score = 97.0 bits (242), Expect = 2e-21
Identities = 53/328 (16%), Positives = 103/328 (31%), Gaps = 83/328 (25%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
LS + + + +LT L + N + + L NL LDLSH+ +
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTK--RLELGTGCLENLENLRELDLSHDDIET 364
Query: 300 LPD----FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
N L+ L++S+N + F+ P
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEP---------------------LSLKTEAFKECP--- 400
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
+L LD++ ++K+ F H LK LN+S
Sbjct: 401 -----QLELLDLAFTRLKVKDAQS------PFQNLHL----------------LKVLNLS 433
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN---TAAVMSNVSQLKYLKNIKYLNC 472
+ + L + + L L++Q + + L+ L ++ L
Sbjct: 434 HS--LLDISSEQLFDGL--------PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 473 S-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH 531
S D+ F + L + + LS+ +L + + + LN++
Sbjct: 484 SFCDLSSIDQHAFTS-----------LKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532
Query: 532 NKVYKLPES-FANLKSLKILDVSYNKLT 558
N + + S L + +++ N L
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 82.4 bits (204), Expect = 1e-16
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+NLSH ++ E + L L L+L N+ N + + Q L L +L LS L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S + F + K++ +D+SHN S K +++ N+ + L
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTS------SSIEALSHLKGIYLNLASNHISIILPSL 542
Query: 356 QVHFCKLVKLDISHNQI 372
+ +++ N +
Sbjct: 543 LPILSQQRTINLRQNPL 559
Score = 75.4 bits (186), Expect = 2e-14
Identities = 54/334 (16%), Positives = 106/334 (31%), Gaps = 96/334 (28%)
Query: 238 TVNLSHQDINFVQES--MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
++LSH DI + L++L L+LS+N ++ ++ L +LDL+
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE---PLSLKTEAFKECPQLELLDLAFT 410
Query: 296 KLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP 352
+L F N +LK L++SH+ S F+ +P
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLL---------------------DISSEQLFDGLP 449
Query: 353 LCLQVHFCKLVKLDISHNQIKILHKPRCT-----HTLQTFSMNHN-IGMKIPEWFWYQEF 406
L L++ N + + L+ ++ + F
Sbjct: 450 --------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF--TSL 499
Query: 407 LCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKN 466
+ +++S N + S+L +
Sbjct: 500 KMMNHVDLSH-------------NRLTSSSIEALSHLKGI-------------------- 526
Query: 467 IKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLE 525
YLN ++ N + + S+L LS + ++L L+C N+ LE
Sbjct: 527 --YLNLAS-----------NHISIILPSLLPILSQQRTINLRQNPLDC---TCSNIYFLE 570
Query: 526 KLNISHNKVYKLPE-SFANLKSLKILDVSYNKLT 558
+ K+ + N L+ + +S L+
Sbjct: 571 WYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
Score = 52.7 bits (127), Expect = 2e-07
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 502 QELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTML 560
+ + N+ LN IP + N E L S N + + +F+ L +L LD++ ++ +
Sbjct: 15 KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 561 PDG-FVMLSNLTTFY 574
+ F L T
Sbjct: 73 HEDTFQSQHRLDTLV 87
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 119 bits (299), Expect = 2e-28
Identities = 61/338 (18%), Positives = 121/338 (35%), Gaps = 69/338 (20%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+NL+ I + + L + N I ++ + Q + L VL L N L
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA---IRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S LP F N L L +S+NN E I + F++
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLER---------------------IEDDTFQATT--- 171
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L L +S N++ + +L ++++N+ + + ++EL+ S
Sbjct: 172 -----SLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAI------PIAVEELDAS 219
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
N + + V L L +Q+ +++ + L + ++ S
Sbjct: 220 H-------------NSINVVRGPVNVELTILKLQHNN--LTDTAWLLNYPGLVEVDLSY- 263
Query: 476 IDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534
N L ++ + ++ L++SN +L + + L+ L++SHN +
Sbjct: 264 ----------NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313
Query: 535 YKLPESFANLKSLKILDVSYNKLTMLP-DGFVMLSNLT 571
+ + L+ L + +N + L L NLT
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351
Score = 117 bits (294), Expect = 7e-28
Identities = 61/350 (17%), Positives = 114/350 (32%), Gaps = 87/350 (24%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
V + + + ++ + +L+L+ I + + L + N +
Sbjct: 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAI 111
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
LP F N +L L + N+ S + F + P
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSS---------------------LPRGIFHNTP--- 147
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
KL L +S+N ++ + TF + L+ L +S
Sbjct: 148 -----KLTTLSMSNNNLERIED-------DTFQATTS----------------LQNLQLS 179
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-N 474
S N + + + +L ++ +S L ++ L+ S N
Sbjct: 180 S-------------NRLTHVDLSLIPSLFHANVSYN-----LLSTLAIPIAVEELDASHN 221
Query: 475 DIDHRKSQDFVNVLWELPLS---------ILYLSSIQELHLSNVQLNCIPEDI-GNLICL 524
I+ + V L L L +L + E+ LS +L I + L
Sbjct: 222 SINVVRGPVNVE-LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280
Query: 525 EKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
E+L IS+N++ L + +LK+LD+S+N L + L Y
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330
Score = 70.7 bits (173), Expect = 5e-13
Identities = 48/280 (17%), Positives = 103/280 (36%), Gaps = 71/280 (25%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
T+++S+ ++ +++ Q T+L L LS N ++ + +L ++S+N L
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL------SLIPSLFHANVSYNLL 204
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
S L + ++ELD SHN+ + + V + + HNN +
Sbjct: 205 STLAIPIA---VEELDASHNSINVVRGPVNVEL--------TILKLQHNNLTDTAWL--L 251
Query: 358 HFCKLVKLDISHNQIKILHKPRCTHT--LQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
++ LV++D+S+N+++ + L+ +++N + + + L K L++S
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL--KVLDLS 309
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
NH+ E ++ L +
Sbjct: 310 H-------------NHLLHVERNQPQ----------------------FDRLENLYLDH- 333
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIP 515
N + L LS +++ L LS+ +C
Sbjct: 334 ----------NSIVTLKLSTH--HTLKNLTLSHNDWDCNS 361
Score = 41.1 bits (96), Expect = 0.001
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++LSH + V+ + Q L L L HN+ + L L LSHN
Sbjct: 305 VLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTLKL------STHHTLKNLTLSHNDW 357
Query: 298 SELPDFLNFKVLKELDISHNN 318
F+ + + +
Sbjct: 358 DCNSLRALFRNVARPAVDDAD 378
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 117 bits (295), Expect = 6e-28
Identities = 58/348 (16%), Positives = 117/348 (33%), Gaps = 45/348 (12%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMS---QKLTNLIVLDLSHNK 296
++ +++ L L L + +++ + + LTN+ L
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 297 LSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ + DF + L++ + F P ++ + + +
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL----------KRLTFTSNKGGNAFSE 343
Query: 357 VHFCKLVKLDISHNQIKILHKP----RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
V L LD+S N + T +L+ ++ N + + F L+ L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF--LGLEQLEHL 401
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
+ ++ + + + NLI L + +T ++ L +++ L
Sbjct: 402 DFQHSN-LKQMSEFSVFLSL--------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 473 SNDIDHRKSQDFVNVLWE--LPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNI 529
+ N E LP L ++ L LS QL + +L L+ LN+
Sbjct: 453 AG-----------NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 530 SHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDGFV--MLSNLTTFY 574
SHN + L + L SL++LD S N + + S+L
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549
Score = 110 bits (277), Expect = 1e-25
Identities = 57/332 (17%), Positives = 114/332 (34%), Gaps = 49/332 (14%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS + + L VLDLS I +++ Q L++L L L+ N +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
L F L++L N S+ + P H ++ +++HN +S L
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLE---------NFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 354 CLQV-HFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
+ L LD+S N+I+ ++ + H + L L
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYC-------TDLRVLHQMP------------LLNLSL 182
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
++S + + L + + +N SL++ T ++ L ++ N
Sbjct: 183 DLSLN--PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHN 532
N KS L L + L+ + + L+ I + L + ++
Sbjct: 241 GNLEKFDKSA-LEG-LCNLTIEEFRLAYL------DYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 533 KVYKLPESFANLKSLKILDVSYNKLTMLPDGF 564
+ ++ F+ + L++ K P
Sbjct: 293 TIERVK-DFSYNFGWQHLELVNCKFGQFPTLK 323
Score = 83.5 bits (207), Expect = 5e-17
Identities = 56/332 (16%), Positives = 101/332 (30%), Gaps = 80/332 (24%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L+ L +L LDLS N +S T+L LDLS N +
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT 387
Query: 300 LP-DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS-------DISHNNFESM 351
+ +FL + L+ LD H+N + M + S DISH +
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQM-----------SEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRC---THTLQTFSMNHN-IGMKIPEWFWYQEFL 407
+ L L ++ N + P L ++ + P F
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLS 494
Query: 408 CLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467
L+ LNMS N+ + + L SL
Sbjct: 495 SLQVLNMSH-------------NNFFSLDTFPYKCLNSL--------------------- 520
Query: 468 KYLNCSNDIDHRKSQDFVNVLWELPLSIL--YLSSIQELHLSNVQLNCIPEDIGNLICLE 525
+ L+ S N + L + SS+ L+L+ C + L+
Sbjct: 521 QVLDYSL-----------NHIMTSKKQELQHFPSSLAFLNLTQNDFAC---TCEHQSFLQ 566
Query: 526 KLNISHNKVYKLPE----SFANLKSLKILDVS 553
+ + ++ + ++ + + +L ++
Sbjct: 567 WIKDQRQLLVEVERMECATPSDKQGMPVLSLN 598
Score = 63.1 bits (154), Expect = 1e-10
Identities = 41/171 (23%), Positives = 65/171 (38%), Gaps = 26/171 (15%)
Query: 409 LKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIK 468
K L++S HL + F L L + + L ++
Sbjct: 30 TKNLDLSFN--PLRHLGSYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 469 YLN-CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEK 526
L N I F LSS+Q+L L + IG+L L++
Sbjct: 80 TLILTGNPIQSLALGAFSG-----------LSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 527 LNISHNK--VYKLPESFANLKSLKILDVSYNKLTML-PDGFVMLSNLTTFY 574
LN++HN +KLPE F+NL +L+ LD+S NK+ + +L +
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Score = 46.6 bits (111), Expect = 2e-05
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+N+SH + + + L +L VLD S N+ ++ + ++L L+L+ N
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFPSSLAFLNLTQNDF 555
Query: 298 S---ELPDFLNF-KVLKELDISHNNFE 320
+ E FL + K ++L + E
Sbjct: 556 ACTCEHQSFLQWIKDQRQLLVEVERME 582
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 113 bits (285), Expect = 1e-27
Identities = 52/364 (14%), Positives = 120/364 (32%), Gaps = 82/364 (22%)
Query: 224 TELNCCNKQYHDIFT-------VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFV 276
L + IF + Q + ++L ++T L ++ I +
Sbjct: 3 ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGI 62
Query: 277 QESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPY 336
+ LTNL L+L+ N+++++ N L L I N +
Sbjct: 63 E-----YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS------------- 104
Query: 337 KHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMK 396
+++ L +L ++ + I + + + ++ N +
Sbjct: 105 ----------ALQNLT--------NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS 146
Query: 397 IPEWFWYQEFLCLKELNMSSTD----PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA 452
L L ++ + +L +L SL +
Sbjct: 147 DLSPL--SNMTGLNYLTVTESKVKDVTPIANLT----------------DLYSLSLNYNQ 188
Query: 453 AVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN 512
+ ++S L L ++ Y N + ++ + ++ + L + N ++
Sbjct: 189 --IEDISPLASLTSLHYFTAYV-----------NQITDIT-PVANMTRLNSLKIGNNKIT 234
Query: 513 CIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
+ + NL L L I N++ + + +L LK+L+V N+++ + LS L +
Sbjct: 235 DLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNS 291
Query: 573 FYAQ 576
+
Sbjct: 292 LFLN 295
Score = 99.2 bits (248), Expect = 7e-23
Identities = 56/324 (17%), Positives = 114/324 (35%), Gaps = 75/324 (23%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
L LT L + N DI+ +Q LTNL L L+ + +S++ N + L++
Sbjct: 86 NLVKLTNLYIGTNKITDISALQ-----NLTNLRELYLNEDNISDISPLANLTKMYSLNLG 140
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N+ S + +M L L ++ +++K +
Sbjct: 141 ANHNLSDL----------------------SPLSNMT--------GLNYLTVTESKVKDV 170
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS----STDPFFEHLPIWLLNH 431
L + S+N+N I L + ++
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITPVANMT------ 221
Query: 432 MELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL 491
L SL + N ++++S L L + +L N + ++
Sbjct: 222 ----------RLNSLKIGNNK--ITDLSPLANLSQLTWLEIGT-----------NQISDI 258
Query: 492 PLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL-PESFANLKSLKIL 550
++ L+ ++ L++ + Q++ I + NL L L +++N++ E L +L L
Sbjct: 259 N-AVKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316
Query: 551 DVSYNKLTMLPDGFVMLSNLTTFY 574
+S N +T + LS + +
Sbjct: 317 FLSQNHITDIR-PLASLSKMDSAD 339
Score = 79.5 bits (197), Expect = 3e-16
Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 75/287 (26%)
Query: 256 KLTNLTVLDLSHNN-HQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
LT + L+L N+ D++ + +T L L ++ +K+ ++ N L L +
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLS-----NMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
++N E + S+ L NQI
Sbjct: 185 NYNQIEDIS-----------------------PLASLT--------SLHYFTAYVNQITD 213
Query: 375 LHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD----PFFEHLPIWLLN 430
+ L + + +N + L L + + + L
Sbjct: 214 ITPVANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQISDINAVKDLT----- 265
Query: 431 HMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
L L++ + +S++S L L + L +N N L
Sbjct: 266 -----------KLKMLNVGSNQ--ISDISVLNNLSQLNSLFLNN-----------NQLGN 301
Query: 491 LPLSIL-YLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK 536
+ ++ L+++ L LS + I + +L ++ + ++ + K
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347
Score = 79.1 bits (196), Expect = 4e-16
Identities = 35/292 (11%), Positives = 87/292 (29%), Gaps = 70/292 (23%)
Query: 287 LIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
L ++++ + + + +
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV----------------------- 38
Query: 347 NFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEF 406
E + + KL ++ ++ + L+ ++N N I
Sbjct: 39 TQEELE--------SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP---LSNL 87
Query: 407 LCLKELNMSSTD----PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
+ L L + + ++L NL L++ +S++S L
Sbjct: 88 VKLTNLYIGTNKITDISALQNLT----------------NLRELYLNEDN--ISDISPLA 129
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
L + LN N + ++ + L ++ ++ + I NL
Sbjct: 130 NLTKMYSLNLGA-----------NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLT 177
Query: 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L L++++N++ + A+L SL N++T + ++ L +
Sbjct: 178 DLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLK 227
Score = 61.0 bits (149), Expect = 3e-10
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 22/124 (17%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
L+ LT L++ N DIN V+ LT L +L++ N++S++ N L L +
Sbjct: 240 ANLSQLTWLEIGTNQISDINAVK-----DLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESM-PLCLQVHFCKLVKLDISH 369
++N + + + +S N+ + PL K+ D ++
Sbjct: 295 NNNQLGNEDM---------EVIGGLTNLTTLFLSQNHITDIRPLA---SLSKMDSADFAN 342
Query: 370 NQIK 373
IK
Sbjct: 343 QVIK 346
Score = 43.7 bits (104), Expect = 1e-04
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L++ + + LTNLT L LS N+ DI + L+ + D ++ + +
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL-----ASLSKMDSADFANQVIKK 347
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 115 bits (290), Expect = 1e-27
Identities = 45/344 (13%), Positives = 109/344 (31%), Gaps = 94/344 (27%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
++ + S+ Q N+ LDLS N ++ + + T L +L+LS N L E
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
D + L+ LD+++N + + +
Sbjct: 73 TLDLESLSTLRTLDLNNNYVQELLVGPS-------------------------------- 100
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419
+ L ++N I + R K + +++
Sbjct: 101 --IETLHAANNNISRVSCSR--------------------------GQGKKNIYLAN--- 129
Query: 420 FFEHLPIWLLNHMELKENGVFSNLISLHM----QNTAAVMSNVSQLKYLKNIKYLNCSND 475
N + + + + N ++ +++LN
Sbjct: 130 ----------NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY- 178
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY 535
N ++++ ++ + ++ L LS+ +L + + + + +++ +NK+
Sbjct: 179 ----------NFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227
Query: 536 KLPESFANLKSLKILDVSYNKLTM--LPDGFVMLSNLTTFYAQR 577
+ ++ ++L+ D+ N L D F + T Q
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Score = 93.8 bits (233), Expect = 2e-20
Identities = 47/329 (14%), Positives = 101/329 (30%), Gaps = 93/329 (28%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++LS ++ + + T L +L+LS N + + + L+ L LDL++N +
Sbjct: 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-----ESLSTLRTLDLNNNYV 92
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
EL + ++ L ++NN + Q +++N +
Sbjct: 93 QELLVGPS---IETLHAANNNISR------------VSCSRGQGKKNIYLANNKITMLRD 137
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413
+ ++ LD+ N+I ++ + T L+ LN
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT----------------------LEHLN 175
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473
+ N I +V +K L+ S
Sbjct: 176 LQ-------------------------YNFI-----------YDVKGQVVFAKLKTLDLS 199
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK 533
+ N L + + + + L N +L I + + LE ++ N
Sbjct: 200 S-----------NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248
Query: 534 VYKLPESFANLKSLKILDVSYNKLTMLPD 562
+ K+ ++ V+ + L
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277
Score = 87.6 bits (217), Expect = 2e-18
Identities = 38/335 (11%), Positives = 92/335 (27%), Gaps = 74/335 (22%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L++ I +++ + + LDL N +NF ++ L L+L +N + +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF--AELAASSDTLEHLNLQYNFIYD 183
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
+ + F LK LD+S N M F+S
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMG----------------------PEFQSAA------- 214
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419
+ + + +N++ ++ + Q L+ ++
Sbjct: 215 -GVTWISLRNNKLVLI--EKALRFSQN----------------------LEHFDLRGNGF 249
Query: 420 FFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHR 479
L + + ++ V + + + Y C D+
Sbjct: 250 HCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYG-----AYCCEDLPAP 302
Query: 480 KSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP- 538
+ L L L + + + N +++ + +
Sbjct: 303 FADR---------LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353
Query: 539 ESFANLKSLKILDVSYNKLT-MLPDGFVMLSNLTT 572
+ ++ L+ L + +G + L
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388
Score = 59.9 bits (145), Expect = 1e-09
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIG-NLICLEKLNISHNKVYKL-PESFANLKSLK 548
+ + + +++ L + + +++L++S N + ++ A L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 549 ILDVSYNKLTMLPDGFVMLSNLTTFY 574
+L++S N L D LS L T
Sbjct: 62 LLNLSSNVLYETLD-LESLSTLRTLD 86
Score = 38.7 bits (90), Expect = 0.005
Identities = 22/168 (13%), Positives = 41/168 (24%), Gaps = 22/168 (13%)
Query: 162 LQSIEDDI--LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIA- 218
L IE + LE + N ++ + ++Q K+T +
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFH--CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 219 --MELIDTELNCCNKQYHDIFT-------VNLSHQDINFVQ----ESMSQKLTNLTVLDL 265
L CC + + E + +D
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343
Query: 266 SHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELD 313
V + ++ + I L+ L E + ELD
Sbjct: 344 LKEQ---YRTVIDQVTLRKQAKITLEQKKKALDEQVS-NGRRAHAELD 387
Score = 32.9 bits (75), Expect = 0.33
Identities = 5/86 (5%), Positives = 22/86 (25%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++ + V + ++ + L+ + +L + + +L
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399
Query: 298 SELPDFLNFKVLKELDISHNNFESMP 323
+ + L + +
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVE 425
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 117 bits (294), Expect = 1e-27
Identities = 66/349 (18%), Positives = 138/349 (39%), Gaps = 29/349 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESM--SQKLTNLIVLDLSHN 295
T++LSH ++ + +L NL L LS+N I ++ ++L L+LS N
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNK---IQALKSEELDIFANSSLKKLELSSN 181
Query: 296 KLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS-DISHNNFESMP 352
++ E F L L +++ L + + ++ +S++ +
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPS---LTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 353 --LCLQVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHN-IGMKIPEWFWYQEFL 407
L + + L LD+S+N + ++ L+ F + +N I
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--HGLF 296
Query: 408 CLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNI 467
++ LN+ + + + L ++ L L+M++ + L N+
Sbjct: 297 NVRYLNLKR-SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355
Query: 468 KYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEK 526
KYL+ SN S + L L S + L+L+ +++ I + L LE
Sbjct: 356 KYLSLSN------SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409
Query: 527 LNISHNKVYKL--PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
L++ N++ + + + L+++ + +SYNK L F ++ +L
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458
Score = 116 bits (292), Expect = 2e-27
Identities = 65/358 (18%), Positives = 117/358 (32%), Gaps = 62/358 (17%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
++S + + + Q L L L++ N+ I ++ +M L NL L L
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND---IPGIKSNMFTGLINLKYLSL 360
Query: 293 SHNKLS------ELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
S++ S E L L L+++ N S I +
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI---------------------SKIESD 399
Query: 347 NFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC---THTLQTFSMNHN-IGMKIPEWFW 402
F + L LD+ N+I + + +++N F
Sbjct: 400 AFSWLG--------HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF- 450
Query: 403 YQEFLCLKELNMSSTD-PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L+ L + + P NL L + N N L
Sbjct: 451 -ALVPSLQRLMLRRVALKNVDSSPSPFQP---------LRNLTILDLSNNNIANINDDML 500
Query: 462 KYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IG 519
+ L+ ++ L+ N++ + LS + L+L + + IP +
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYF---LKGLSHLHILNLESNGFDEIPVEVFK 557
Query: 520 NLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDGF--VMLSNLTTFY 574
+L L+ +++ N + LP S F N SLK L++ N +T + NLT
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615
Score = 111 bits (279), Expect = 9e-26
Identities = 76/359 (21%), Positives = 128/359 (35%), Gaps = 78/359 (21%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
NL+H + + + + + LT LD+ N I+ ++ + QKL L VL+L HN+LS+
Sbjct: 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNELSQ 87
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
L D F L EL + N+ + I +N F
Sbjct: 88 LSDKTFAFCTNLTELHLMSNSIQK---------------------IKNNPFVKQK----- 121
Query: 358 HFCKLVKLDISHNQIKILHKPRCTH--TLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNM 414
L+ LD+SHN + LQ +++N I E LK+L +
Sbjct: 122 ---NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHM------QNTAAVMSNVSQLKYLKNIK 468
SS N ++ G F + L Q ++ + +I+
Sbjct: 179 SS-------------NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225
Query: 469 YLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEK 526
L+ S + + + F+ L +++ L LS LN + D L LE
Sbjct: 226 NLSLSNSQLSTTSNTTFLG---------LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276
Query: 527 LNISHNKVYKL-PESFANLKSLKILD---------VSYNKLTMLPDG-FVMLSNLTTFY 574
+ +N + L S L +++ L+ +S L + D F L L
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335
Score = 107 bits (270), Expect = 1e-24
Identities = 65/351 (18%), Positives = 113/351 (32%), Gaps = 80/351 (22%)
Query: 238 TVNLSHQDINFVQESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
++LS+ ++ + K TNLT+LDLS+NN +N V L L L +N
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN---LNVVGNDSFAWLPQLEYFFLEYN 282
Query: 296 KLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL 353
+ L ++ L++ + + IS + +
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQ--------------------SISLASLPKIDD 322
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCTH--TLQTFSMNHN---IGMKIPEWFWYQEFLC 408
L L++ N I + T L+ S++++ + E F
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382
Query: 409 LKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIK 468
L LN++ N + E+ FS L L+ L
Sbjct: 383 LHILNLTK-------------NKISKIESDAFSWL---------------GHLEVL---- 410
Query: 469 YLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQL-NCIPEDIGNLICLEKL 527
L N+I + L +I E++LS + + L++L
Sbjct: 411 DLG-LNEIGQELT----------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459
Query: 528 NISHNK---VYKLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+ V P F L++L ILD+S N + + D L L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510
Score = 101 bits (253), Expect = 1e-22
Identities = 53/337 (15%), Positives = 119/337 (35%), Gaps = 87/337 (25%)
Query: 238 TVNLSHQDINFVQES----MSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLS 293
++LS+ + + +S + L +L+L+ N I+ ++ L +L VLDL
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK---ISKIESDAFSWLGHLEVLDLG 413
Query: 294 HNKLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES 350
N++ + + + + E+ +S+N + ++ N+F
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKY---------------------LQLTRNSFAL 452
Query: 351 MPLCLQVHFCKLVKLDISHNQIKILHKP----RCTHTLQTFSMNHN-IGMKIPEWFWYQE 405
+P L +L + +K + + L +++N I + +
Sbjct: 453 VP--------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--EG 502
Query: 406 FLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLK 465
L+ L++ N ++ + A + LK L
Sbjct: 503 LEKLEILDLQH-------------------------NNLA-RLWKHANPGGPIYFLKGLS 536
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLIC 523
++ LN + N E+P+ + L ++ + L LN +P + N +
Sbjct: 537 HLHILNLES-----------NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585
Query: 524 LEKLNISHNKVYKLPESF--ANLKSLKILDVSYNKLT 558
L+ LN+ N + + + ++L LD+ +N
Sbjct: 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 87.4 bits (217), Expect = 4e-18
Identities = 59/317 (18%), Positives = 104/317 (32%), Gaps = 91/317 (28%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELDIS 315
+ V D SH + TN+ VL+L+HN+L LP +F + L LD+
Sbjct: 4 VSHEVADCSHLKLTQV------PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N S + + +P L L++ HN++ L
Sbjct: 58 FNTI---------------------SKLEPELCQKLP--------MLKVLNLQHNELSQL 88
Query: 376 HKP--RCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHM 432
L + N I F Q+ L L++S N +
Sbjct: 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN--LITLDLSH-------------NGL 133
Query: 433 ELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN-CSNDIDHRKSQDFVNVLWEL 491
+ G L+N++ L +N I KS++
Sbjct: 134 SSTKLGTQVQ---------------------LENLQELLLSNNKIQALKSEEL------- 165
Query: 492 PLSILYLSSIQELHLSNVQLNCI-PEDIGNLICLEKLNISHNK-VYKLPESFA---NLKS 546
I SS+++L LS+ Q+ P + L L +++ + L E S
Sbjct: 166 --DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223
Query: 547 LKILDVSYNKLTMLPDG 563
++ L +S ++L+ +
Sbjct: 224 IRNLSLSNSQLSTTSNT 240
Score = 80.0 bits (198), Expect = 7e-16
Identities = 49/326 (15%), Positives = 98/326 (30%), Gaps = 82/326 (25%)
Query: 240 NLSHQDINFVQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+L +I + L N+ + LS+N + + + +L L L L
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNK---YLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 299 ELPD----FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
+ F + L LD+S+NN ++I+ + E +
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNI---------------------ANINDDMLEGLE-- 504
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
KL LD+ HN + L K H + + L LN+
Sbjct: 505 ------KLEILDLQHNNLARLWK-------------HANPGGPIYFL--KGLSHLHILNL 543
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
S F+ +P+ + + L + + S ++K LN
Sbjct: 544 ESNG--FDEIPVEVFKDL--------FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 475 DIDHRKSQDFVNVLWELPLSILY--LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHN 532
N++ + + ++ EL + +C E I + +N +H
Sbjct: 594 -----------NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF--VNWINETHT 640
Query: 533 KVYKLPESF-----ANLKSLKILDVS 553
+ +L + + +
Sbjct: 641 NIPELSSHYLCNTPPHYHGFPVRLFD 666
Score = 67.3 bits (165), Expect = 7e-12
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI-PEDIGNLICL 524
+ + +CS+ L ++P + ++I L+L++ QL + + L
Sbjct: 5 SHEVADCSH-----------LKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQL 51
Query: 525 EKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L++ N + KL PE L LK+L++ +N+L+ L D F +NLT +
Sbjct: 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103
Score = 64.3 bits (157), Expect = 7e-11
Identities = 40/234 (17%), Positives = 73/234 (31%), Gaps = 74/234 (31%)
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
D SH +P L + L+++HNQ++ L F+
Sbjct: 10 DCSHLKLTQVPDDL---PTNITVLNLTHNQLRRLPAA-------NFTRYSQ--------- 50
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L L++ N + E + L L
Sbjct: 51 -------LTSLDVGF-------------NTISKLEPELCQKLPML--------------- 75
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPED-IG 519
K LN + N L +L +++ ELHL + + I +
Sbjct: 76 ------KVLNLQH-----------NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 520 NLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
L L++SHN + + L++L+ L +S NK+ L + + ++
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172
Score = 30.0 bits (68), Expect = 2.6
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 238 TVNLSHQDINFVQES-MSQKLTNLTVLDLSHNN-HQDINFVQESMSQ-KLTNLIVLDLSH 294
++NL I V++ NLT LD+ N + ++ T+ + +LS
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647
Query: 295 NKLSELPDFLNFKVLKELDIS 315
+ L P + ++ D S
Sbjct: 648 HYLCNTPPHYHGFPVRLFDTS 668
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 109 bits (274), Expect = 2e-26
Identities = 54/354 (15%), Positives = 111/354 (31%), Gaps = 99/354 (27%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
D ++L + I +++ + L NL L L +N I+ + L L L LS
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK---ISKISPGAFAPLVKLERLYLSK 109
Query: 295 NKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
N+L ELP+ + K L+EL + N + + F +
Sbjct: 110 NQLKELPEKM-PKTLQELRVHENEITK---------------------VRKSVFNGLN-- 145
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
+++ +++ N +K F L + +
Sbjct: 146 ------QMIVVELGTNPLKSSGIEN-----GAFQGMKK----------------LSYIRI 178
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQN------TAAVMSNVSQLKYLKNIK 468
+ ++ G+ +L LH+ AA + ++ L L
Sbjct: 179 AD-------------TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL---- 221
Query: 469 YLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLN 528
L+ N I + N ++ELHL+N +L +P + + ++ +
Sbjct: 222 GLS-FNSISAVDNGSLAN-----------TPHLRELHLNNNKLVKVPGGLADHKYIQVVY 269
Query: 529 ISHNKVYKLPES-------FANLKSLKILDVSYNKLTML---PDGFVMLSNLTT 572
+ +N + + + S + + N + P F +
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323
Score = 99.7 bits (249), Expect = 4e-23
Identities = 55/323 (17%), Positives = 102/323 (31%), Gaps = 111/323 (34%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
+ +LDL +N I +++ + L NL L L +NK+S++ F L+ L +S
Sbjct: 52 PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N + +P + L +L + N+I +
Sbjct: 109 KNQLKELPEKM--------------------------------PKTLQELRVHENEITKV 136
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
K F+ + + + + + N ++
Sbjct: 137 RK-------SVFNGLNQ----------------MIVVELGT-------------NPLKSS 160
Query: 436 --ENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPL 493
ENG F + L Y+ ++ + +P
Sbjct: 161 GIENGAFQGMKKL---------------------SYIRIAD-----------TNITTIPQ 188
Query: 494 SILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILD 551
+ S+ ELHL ++ + L L KL +S N + + S AN L+ L
Sbjct: 189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246
Query: 552 VSYNKLTMLPDGFVMLSNLTTFY 574
++ NKL +P G + Y
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVY 269
Score = 67.3 bits (165), Expect = 3e-12
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 31/158 (19%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+L I V + + L NL L LS N+ I+ V +L L L++NKL +
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNS---ISAVDNGSLANTPHLRELHLNNNKLVK 254
Query: 300 LPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVH 358
+P + K ++ + + +NN + I N+F P
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISA---------------------IGSNDF--CPPGYNTK 291
Query: 359 FCKLVKLDISHNQIKILHKP----RCTHTLQTFSMNHN 392
+ + N ++ RC + + +
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 111 bits (279), Expect = 3e-26
Identities = 64/345 (18%), Positives = 118/345 (34%), Gaps = 86/345 (24%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ L+ ++ V+ L NL L L N + + + L+NL LD+S NK+
Sbjct: 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNR---LKLIPLGVFTGLSNLTKLDISENKI 116
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
L D F + LK L++ N+ ISH F +
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVY---------------------ISHRAFSGLN--- 152
Query: 356 QVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413
L +L + + + H L + H I + F L L
Sbjct: 153 -----SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRL- 202
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473
+ L I +++ L N+ L+ +
Sbjct: 203 --------KVLEISHWPYLDTMTPNCLYGL----------------------NLTSLSIT 232
Query: 474 NDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISH 531
+ L +P + +L ++ L+LS ++ I + L+ L+++ +
Sbjct: 233 H-----------CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281
Query: 532 NKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
++ + +F L L++L+VS N+LT L + F + NL T
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326
Score = 109 bits (275), Expect = 1e-25
Identities = 66/343 (19%), Positives = 120/343 (34%), Gaps = 65/343 (18%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
V + V E + T +LDL N I + + +L L+L+ N +
Sbjct: 15 AVLCHRKRFVAVPEGIP---TETRLLDLGKNR---IKTLNQDEFASFPHLEELELNENIV 68
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S + F N L+ L + N I F +
Sbjct: 69 SAVEPGAFNNLFNLRTLGLRSNRL---------------------KLIPLGVFTGLS--- 104
Query: 356 QVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPE-WFWYQEFLCLKEL 412
L KLDIS N+I IL + + L++ + N + I F L++L
Sbjct: 105 -----NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS--LEQL 157
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
+ + +P L+H+ LI L +++ K L +K L
Sbjct: 158 TLEKCN--LTSIPTEALSHL--------HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNISH 531
S+ L + + LY ++ L +++ L +P + +L+ L LN+S+
Sbjct: 208 SHW----------PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257
Query: 532 NKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
N + + L L+ + + +L ++ F L+ L
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300
Score = 103 bits (258), Expect = 1e-23
Identities = 61/327 (18%), Positives = 107/327 (32%), Gaps = 85/327 (25%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
T+ L + + + L+NLT LD+S N I + + M Q L NL L++ N L
Sbjct: 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENK---IVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
+ F L++L + N + I +
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNL---------------------TSIPTEALSHLH--- 176
Query: 356 QVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNH-NIGMKIPEWFWYQEFLCLKEL 412
L+ L + H I + + + L+ ++H + Y L L L
Sbjct: 177 -----GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSL 229
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
+++ + +P +L L++L L+
Sbjct: 230 SITHCN--LTAVP-----------YLAVRHL---------------VYLRFL----NLS- 256
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISH 531
N I + L +QE+ L QL + L L LN+S
Sbjct: 257 YNPISTIEGSMLHE-----------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 532 NKVYKLPES-FANLKSLKILDVSYNKL 557
N++ L ES F ++ +L+ L + N L
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 74.8 bits (184), Expect = 2e-14
Identities = 48/283 (16%), Positives = 80/283 (28%), Gaps = 91/283 (32%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+ D+ ++ L +L L L N + + L LIVL L H ++
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCN---LTSIPTEALSHLHGLIVLRLRHLNINA 190
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS------DISHNNFESM 351
+ D F LK L+ISH + + I+H N ++
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLD-----------TMTPNCLYGLNLTSLSITHCNLTAV 239
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKE 411
P H L L++S+N I + L+E
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEG-------SMLHELLR----------------LQE 276
Query: 412 LNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471
+ + + + E F L L + LN
Sbjct: 277 IQLVG-------------GQLAVVEPYAFRGLNYL---------------------RVLN 302
Query: 472 CSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNC 513
S N L L S+ + +++ L L + L C
Sbjct: 303 VSG-----------NQLTTLEESVFHSVGNLETLILDSNPLAC 334
Score = 71.3 bits (175), Expect = 3e-13
Identities = 53/293 (18%), Positives = 99/293 (33%), Gaps = 84/293 (28%)
Query: 289 VLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNF 348
+ + +P+ + + LD+ N ++ ++ + F
Sbjct: 15 AVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKT---------------------LNQDEF 52
Query: 349 ESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLC 408
S P L +L+++ N + + F+ N
Sbjct: 53 ASFP--------HLEELELNENIVSAVEP-------GAFNNLFN---------------- 81
Query: 409 LKELNMSSTDPFFEHLPIWLLNHMELKENGVF---SNLISLHMQNTAAVMSNVSQLKYLK 465
L+ L + S N ++L GVF SNL L + V+ + L
Sbjct: 82 LRTLGLRS-------------NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128
Query: 466 NIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDI-GNLIC 523
N+K L + N L + L+S+++L L L IP + +L
Sbjct: 129 NLKSLEVGD-----------NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 524 LEKLNISHNKVYKLPE-SFANLKSLKILDVSYNK-LTMLPDGFVMLSNLTTFY 574
L L + H + + + SF L LK+L++S+ L + + NLT+
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230
Score = 41.6 bits (98), Expect = 6e-04
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ L + V+ + L L VL++S N + ++ES+ + NL L L N L
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ---LTTLEESVFHSVGNLETLILDSNPL 332
Query: 298 S 298
+
Sbjct: 333 A 333
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 111 bits (279), Expect = 1e-25
Identities = 60/323 (18%), Positives = 117/323 (36%), Gaps = 54/323 (16%)
Query: 256 KLTNLTVLDLSHNN-HQDINFVQESMSQKLTNLIVLDLSHNKLS-ELPDFL-NFKVLKEL 312
L+ L L L N +I + + + L L L N L+ E+P L N L +
Sbjct: 440 SLSKLRDLKLWLNMLEGEIP---QELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 313 DISHNNFE-SMPLCLQVHFYVHIPYKHSQS----DISHNNFE-SMPLCLQVHFCKLVKLD 366
+S+N +P + ++ +S+N+F ++P L L+ LD
Sbjct: 496 SLSNNRLTGEIPKWI----------GRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLD 544
Query: 367 ISHNQI--KILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHL 424
++ N I P + I K + + F
Sbjct: 545 LNTNLFNGTI---PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA-GNLLEFQGIR 600
Query: 425 PIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDF 484
L S ++ + ++ +L+ S
Sbjct: 601 SEQLNR---------LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY---------- 641
Query: 485 VNVLW-ELPLSILYLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNISHNKVY-KLPESF 541
N+L +P I + + L+L + ++ IP+++G+L L L++S NK+ ++P++
Sbjct: 642 -NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 542 ANLKSLKILDVSYNKLT-MLPDG 563
+ L L +D+S N L+ +P+
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEM 723
Score = 102 bits (256), Expect = 7e-23
Identities = 76/369 (20%), Positives = 128/369 (34%), Gaps = 80/369 (21%)
Query: 222 IDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN-HQDINFVQESM 280
+ L + + D+ ++S N V +S L L +S N D++
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDV----- 196
Query: 281 SQKLTNLIVLDLSHNKLS-ELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHS 339
+ NL LD+S N S +P + L+ LDIS N S
Sbjct: 197 -SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-----------DFSRAIS 244
Query: 340 QS------DISHNNFE-SMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN 392
+IS N F +P L L ++ N
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAEN---------------------K 280
Query: 393 IGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTA 452
+IP++ L L++S F+ +P + + L+ + SN S +
Sbjct: 281 FTGEIPDFLSGA-CDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSGELPM-- 336
Query: 453 AVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLW-ELPLSILYLS-SIQELHLSNVQ 510
L ++ +K L+ S N ELP S+ LS S+ L LS+
Sbjct: 337 ------DTLLKMRGLKVLDLSF-----------NEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 511 LN-CIPEDIGN--LICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT-MLPDGFV 565
+ I ++ L++L + +N K+P + +N L L +S+N L+ +P
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 566 MLSNLTTFY 574
LS L
Sbjct: 440 SLSKLRDLK 448
Score = 98.8 bits (247), Expect = 8e-22
Identities = 74/333 (22%), Positives = 121/333 (36%), Gaps = 95/333 (28%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELPDFL--NFKVLKEL 312
T L +L++S N FV L +L L L+ NK + E+PDFL L L
Sbjct: 245 TCTELKLLNISSNQ-----FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 313 DISHNNFESMPLCLQVHFYVHIP--YKHSQS----DISHNNFE-SMPLCLQVHFCKLVKL 365
D+S N+F +P + +S NNF +P+ + L L
Sbjct: 300 DLSGNHFYG-----------AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 366 DISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLP 425
D+S N+ G ++PE L L++SS + F +
Sbjct: 349 DLSFNEFS--------------------G-ELPESLTNLSAS-LLTLDLSSNN-FSGPIL 385
Query: 426 IWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFV 485
L + + L L++QN
Sbjct: 386 PNLCQNP-------KNTLQELYLQN----------------------------------- 403
Query: 486 NVL-WELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFA 542
N ++P ++ S + LHLS L+ IP +G+L L L + N + ++P+
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 543 NLKSLKILDVSYNKLT-MLPDGFVMLSNLTTFY 574
+K+L+ L + +N LT +P G +NL
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Score = 95.7 bits (239), Expect = 1e-20
Identities = 70/340 (20%), Positives = 117/340 (34%), Gaps = 62/340 (18%)
Query: 257 LTNLTVLDLSHNNHQDINFV-QESMSQKLTNLIVLDLSHNKLS-----ELPDFLNFKVLK 310
+ L L++S N ++F + S KL +L VLDLS N +S LK
Sbjct: 125 CSGLKFLNVSSNT---LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
Query: 311 ELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFE-SMPLCLQVHFCKLVKL 365
L IS N + + D+S NNF +P L L
Sbjct: 182 HLAISGNKISG-----------DVDVSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHL 228
Query: 366 DISHNQI--KILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNMSSTDPFFE 422
DIS N++ L+ +++ N IP L+ L+++ F
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS----LQYLSLAENK-FTG 283
Query: 423 HLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQ 482
+P +L L L + + ++ L S+
Sbjct: 284 EIPDFLSGAC--------DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS-------- 327
Query: 483 DFVNVLW-ELPLSILY-LSSIQELHLSNVQLN-CIPEDIGNLIC-LEKLNISHNKVY-KL 537
N ELP+ L + ++ L LS + + +PE + NL L L++S N +
Sbjct: 328 ---NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 538 PESFAN--LKSLKILDVSYNKLT-MLPDGFVMLSNLTTFY 574
+ +L+ L + N T +P S L + +
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Score = 95.4 bits (238), Expect = 1e-20
Identities = 66/344 (19%), Positives = 110/344 (31%), Gaps = 94/344 (27%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS---ELPDFLNFKVLKELD 313
+LT LDLS N+ S+ + L L++S N L ++ L L+ LD
Sbjct: 99 SASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157
Query: 314 ISHNNFESMPLCLQVHFYVHIPYKHSQS---------DISHNNFE-SMPLCLQVHFCKLV 363
+S N+ S IS N + + L
Sbjct: 158 LSANSISG-----------ANVVGWVLSDGCGELKHLAISGNKISGDVDVS---RCVNLE 203
Query: 364 KLDISHNQI--KILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNMSSTDPF 420
LD+S N I C+ LQ ++ N + +
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAIS----------TCTE---- 248
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK 480
L + + N F I LK+++YL+ +
Sbjct: 249 --------LKLLNISSNQ-FVGPIPP---------LP------LKSLQYLSLAE------ 278
Query: 481 SQDFVNVL-WELPLSILY-LSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVYKL 537
N E+P + ++ L LS +P G+ LE L +S N
Sbjct: 279 -----NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN---F 330
Query: 538 -----PESFANLKSLKILDVSYNKLT-MLPDGFVMLS-NLTTFY 574
++ ++ LK+LD+S+N+ + LP+ LS +L T
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Score = 89.2 bits (222), Expect = 1e-18
Identities = 75/360 (20%), Positives = 130/360 (36%), Gaps = 87/360 (24%)
Query: 238 TVNLSHQDINFVQESMS---QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
+++LS + +N ++S LT L L LS+++ S + +L LDLS
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING----SVSGFKCSASLTSLDLSR 109
Query: 295 NKLS-ELPDFL---NFKVLKELDISHNNFE---SMPLCLQVHFYVHIPYKHSQSDISHNN 347
N LS + + LK L++S N + + L+++ + D+S N+
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL-------DLSANS 162
Query: 348 FES---MPLCLQVHFCKLVKLDISHNQI--KILHKP--RCTHTLQTFSMNHNIGMKIPEW 400
+ L +L L IS N+I + RC + L+ ++ N
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVN-LEFLDVSSN-------- 210
Query: 401 FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460
N S+ PF L H+++ N S S
Sbjct: 211 ------------NFSTGIPFLGDCS--ALQHLDISGNK-LSGDFS-------------RA 242
Query: 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVL-WELPLSILYLSSIQELHLSNVQLN-CIPEDI 518
+ +K LN S+ N +P L S+Q L L+ + IP+ +
Sbjct: 243 ISTCTELKLLNISS-----------NQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFL 289
Query: 519 -GNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLT--MLPDGFVMLSNLTTFY 574
G L L++S N Y +P F + L+ L +S N + + D + + L
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Score = 82.3 bits (204), Expect = 2e-16
Identities = 53/321 (16%), Positives = 99/321 (30%), Gaps = 99/321 (30%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELPDFLNFKVLKELDISH 316
+T +DLS S LT L L LS++ ++ + F L LD+S
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
N+ + S S L L++S N +
Sbjct: 110 NSLSG-----------PVTTLTSLGSCSG----------------LKFLNVSSNTL---- 138
Query: 377 KPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436
F + G+K+ L+ L++S+ + +
Sbjct: 139 ---------DFPGKVSGGLKLNS---------LEVLDLSANS-ISGANVVGWV------- 172
Query: 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL 496
+ L K+L S N + + +
Sbjct: 173 --LSDGCGEL---------------------KHLAISG-----------NKI-SGDVDVS 197
Query: 497 YLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSY 554
+++ L +S+ + IP +G+ L+ L+IS NK+ + + LK+L++S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 555 NKLT-MLPDGFVMLSNLTTFY 574
N+ +P L +L
Sbjct: 257 NQFVGPIPPL--PLKSLQYLS 275
Score = 76.9 bits (190), Expect = 8e-15
Identities = 72/362 (19%), Positives = 114/362 (31%), Gaps = 86/362 (23%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELPDFL--NFKVLKEL 312
+ L L LS NN + K+ L VLDLS N+ S ELP+ L L L
Sbjct: 316 SCSLLESLALSSNNFSGE--LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 313 DISHNNFE-SMPLCLQVHFYVHIPYKHSQSDISHNNFE-SMPLCLQVHFCKLVKLDISHN 370
D+S NNF + L + + + + +N F +P L + +LV L +S N
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTL----QELYLQNNGFTGKIPPTLS-NCSELVSLHLSFN 428
Query: 371 QI--KILHKPRC---THTLQTFSMNHN--IGMKIPEWFWYQEFLCLKELNMSSTDPFFE- 422
+ I P L+ + N G +IP+ Y + L + L +
Sbjct: 429 YLSGTI---PSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTL--ETLILDFN--DLTG 480
Query: 423 HLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV------SQLKYLKNIKYLNCSNDI 476
+P L N +NL + + N N + L+N+ L SN
Sbjct: 481 EIPSGLSN---------CTNLNWISLSN------NRLTGEIPKWIGRLENLAILKLSN-- 523
Query: 477 DHRKSQDFVNVLW-ELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKV 534
N +P + S+ L L+ N IP + N K
Sbjct: 524 ---------NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 535 YK-----------------------LPESFANLKSLKILDVSYNKLT-MLPDGFVMLSNL 570
Y E L + +++ F ++
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 571 TT 572
Sbjct: 635 MF 636
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 108 bits (271), Expect = 3e-25
Identities = 62/343 (18%), Positives = 127/343 (37%), Gaps = 37/343 (10%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS I + E+ +L +L L + ++ + + L++LI+L L +N+ +
Sbjct: 36 DLSLNSIAELNETSFSRLQDLQFLKVEQQ--TPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESM-P 352
L F L+ L ++ N + L +K S + NN + + P
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNF-------FKPLTSLEMLVLRDNNIKKIQP 146
Query: 353 LCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
++ + LD++ N++K + C L F H +++ L+++
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSI----CEEDLLNFQGKHFTLLRLSSI-------TLQDM 195
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
N P + L + N M ++++ L N
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLD---LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISH 531
+ H +D N L S ++ LS ++ + + + + LE+L ++
Sbjct: 253 GSSFGHTNFKDPDN----FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 532 NKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
N++ K+ + +F L L L++S N L + F L L
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351
Score = 104 bits (261), Expect = 4e-24
Identities = 72/346 (20%), Positives = 131/346 (37%), Gaps = 40/346 (11%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L + ++ L NL VL L+ N + + + LT+L +L L N + +
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA-VLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 300 LPD---FLNFKVLKELDISHNNFESMP----LCLQVHFYVHIPYKHSQ-SDISHNNFESM 351
+ FLN + LD++ N +S+ L Q + + D++
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKE 411
+ LD+S N K R + + I K+
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 412 LNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471
+ + F+ L + +L ++ +F+ + +V S+ + L+ L L
Sbjct: 264 PDNFT----FKGLEASGVKTCDLSKSKIFA--LL------KSVFSHFTDLEQL----TLA 307
Query: 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNIS 530
N+I+ F L+ + +L+LS L I + NL LE L++S
Sbjct: 308 -QNEINKIDDNAFWG-----------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355
Query: 531 HNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+N + L + SF L +LK L + N+L +PDG F L++L +
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401
Score = 55.5 bits (134), Expect = 3e-08
Identities = 52/301 (17%), Positives = 93/301 (30%), Gaps = 74/301 (24%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLT--NLIVLDLSHNKLSELPD---------- 302
+ VLDL+ N + + E + +L LS L ++ +
Sbjct: 151 LNMRRFHVLDLTFNK---VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207
Query: 303 FLNFKVLKELDISHNNFESMPL--------CLQVHFYVHIPYKHSQSDISHNNFESMP-- 352
+ LD+S N F+ ++ + + S H NF+
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 353 LCLQVHFCKLVKLDISHNQIKILHK--PRCTHTLQTFSMNHNIGMKIPEWFWYQEFLC-- 408
+ + D+S ++I L K L+ ++ N KI + F
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD----NAFWGLT 323
Query: 409 -LKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISL---HMQN------TAAVMSNV 458
L +LN+S N + ++ +F NL L + +
Sbjct: 324 HLLKLNLSQ-------------NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPED 517
LK L L+ N L +P I L+S+Q++ L +C
Sbjct: 371 PNLKEL----ALD-------------TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Query: 518 I 518
I
Sbjct: 414 I 414
Score = 52.1 bits (125), Expect = 3e-07
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 499 SSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKL--PESFANLKSLKILDVSYN 555
+ + + LS + + E L L+ L + + +F L SL IL + YN
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
+ L G F L+NL
Sbjct: 90 QFLQLETGAFNGLANLEVLT 109
Score = 44.0 bits (104), Expect = 1e-04
Identities = 38/259 (14%), Positives = 75/259 (28%), Gaps = 62/259 (23%)
Query: 362 LVKLDISHNQIKILHKPRCTH--TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419
+ +D+S N I L++ + LQ + + +
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ------------------TPGLVIRNN 73
Query: 420 FFEHLPIWLLNHMELKEN-------GVFSNLISL------HMQNTAAVMSNVSQLKYLKN 466
F L L ++L N G F+ L +L AV+S + K L +
Sbjct: 74 TFRGLS--SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTS 130
Query: 467 IKYLNCSNDIDHRKSQDFVNVLWELPLSIL--YLSSIQELHLSNVQLNCIPEDI---GNL 521
++ L + N + ++ + + L L+ ++ I E+
Sbjct: 131 LEMLVLRD-----------NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 522 ICLEKLNISHNKVYKLPE---------SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLT 571
L +S + + E + S+ LD+S N F T
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239
Query: 572 TFYAQRKYWMFLTISLLCY 590
+ + S +
Sbjct: 240 KIQSLILSNSYNMGSSFGH 258
Score = 34.3 bits (79), Expect = 0.12
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
+LS+ I + + L NL L L N + V + + +LT+L + L N
Sbjct: 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQ---LKSVPDGIFDRLTSLQKIWLHTN 405
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 108 bits (270), Expect = 6e-25
Identities = 54/348 (15%), Positives = 89/348 (25%), Gaps = 107/348 (30%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ N + I+ L N V + L L+ L
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENR--NEAVSLLKECLINQFSELQLNRLNL 71
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
S LPD L + L+I+ N S+P
Sbjct: 72 SSLPDNL-PPQITVLEITQNALISLP---------------------------------E 97
Query: 358 HFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417
L LD N++ L PE LK L++ +
Sbjct: 98 LPASLEYLDACDNRLSTL----------------------PE-----LPASLKHLDVDNN 130
Query: 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL----KNIKYLNCS 473
LP + L ++ N QL L +++ L+
Sbjct: 131 Q--LTMLPELP------------ALLEYINADNN--------QLTMLPELPTSLEVLSVR 168
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEK----LNI 529
N N L LP S++ L +S L +P E+
Sbjct: 169 N-----------NQLTFLPEL---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 530 SHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQR 577
N++ +PE+ +L + + N L+ + Y
Sbjct: 215 RENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262
Score = 39.2 bits (91), Expect = 0.004
Identities = 12/117 (10%), Positives = 27/117 (23%), Gaps = 9/117 (7%)
Query: 240 NLSHQDINFVQESMSQKLTNLT----VLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
++S + + + + N I + E++ L + L N
Sbjct: 186 DVSTNLLESLPAVPVR-NHHSEETEIFFRCRENR---ITHIPENILS-LDPTCTIILEDN 240
Query: 296 KLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP 352
LS + + D Q + + N +
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 103 bits (260), Expect = 2e-24
Identities = 55/330 (16%), Positives = 103/330 (31%), Gaps = 103/330 (31%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
D ++L + DI+ +++ + L +L L L +N I+ + E L L L +S
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK---ISKIHEKAFSPLRKLQKLYISK 111
Query: 295 NKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
N L E+P L L EL I N + F +
Sbjct: 112 NHLVEIPPNL-PSSLVELRIHDNRI---------------------RKVPKGVFSGLR-- 147
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
+ +++ N ++ F G+K L L +
Sbjct: 148 ------NMNCIEMGGNPLENSGFEP-----GAFD-----GLK------------LNYLRI 179
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
S + + L LH+ + N
Sbjct: 180 SE-------------AKLTGIPKDLPETLNELHLDH-----------------------N 203
Query: 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNK 533
I + +D + S + L L + Q+ I L L +L++ +NK
Sbjct: 204 KIQAIELEDLLR-----------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 534 VYKLPESFANLKSLKILDVSYNKLTMLPDG 563
+ ++P +LK L+++ + N +T +
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282
Score = 97.4 bits (243), Expect = 2e-22
Identities = 67/341 (19%), Positives = 117/341 (34%), Gaps = 111/341 (32%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
V S + V + +S + T+LDL +N+ I+ +++ + L +L L L +NK+
Sbjct: 37 VVQCSDLGLKAVPKEIS---PDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKI 90
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S++ + F + L++L IS N+ +P L
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNL----------------------------- 121
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
LV+L I N+I+ + K FS N + + M
Sbjct: 122 ---PSSLVELRIHDNRIRKVPK-------GVFSGLRN----------------MNCIEMG 155
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
L + E G F L + YL S
Sbjct: 156 GN----------PLENSGF-EPGAFDGL----------------------KLNYLRISE- 181
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKV 534
L +P + ++ ELHL + ++ I + L +L + HN++
Sbjct: 182 ----------AKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 535 YKLPE-SFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ S + L +L+ L + NKL+ +P G L L Y
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY 270
Score = 79.7 bits (197), Expect = 2e-16
Identities = 48/331 (14%), Positives = 101/331 (30%), Gaps = 93/331 (28%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ L + I+ + E L L L +S N+ + + ++ ++L+ L + N++
Sbjct: 82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNH---LVEIPPNL---PSSLVELRIHDNRI 135
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
++P F + + +++ N E+ F K + IS +P L
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FD---GLKLNYLRISEAKLTGIPKDL 191
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L +L + HN+I+ + + L L +
Sbjct: 192 ---PETLNELHLDHNKIQAIEL-------EDLLRYSK----------------LYRLGLG 225
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
N + + ENG S L +L + L+ N
Sbjct: 226 H-------------NQIRMIENGSLSFLPTL---------------------RELHLDN- 250
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-------GNLICLEKLN 528
N L +P + L +Q ++L + + + ++
Sbjct: 251 ----------NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300
Query: 529 ISHNKVYKL---PESFANLKSLKILDVSYNK 556
+ +N V P +F + + K
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 106 bits (266), Expect = 2e-24
Identities = 70/396 (17%), Positives = 132/396 (33%), Gaps = 48/396 (12%)
Query: 224 TELNCCNKQYHDIFT--------VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINF 275
+ ++ N+ + ++LS I+ ++ L+ L VL LSHN + ++
Sbjct: 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD- 92
Query: 276 VQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIP 335
+ +L LD+SHN+L + L+ LD+S N+F+ +P+C + +
Sbjct: 93 --FHVFLFNQDLEYLDVSHNRLQNIS-CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKL- 148
Query: 336 YKHSQSDISHNNFESMPLC------LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSM 389
+ +S F + L L LV I + + L P T F
Sbjct: 149 ---TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205
Query: 390 NHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQ 449
N +++ L L + ++ + + EL N+ H++
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS-----ELTRGPTLLNVTLQHIE 260
Query: 450 NTAAVMSNVSQLKYLKNIKYLNCSN-----DIDHRKSQDFVNVLWELPLSILY------- 497
T + Q + + ++YLN N ID + L L + +
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320
Query: 498 -------LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLK 548
+ + LS I + LN + N + LK L+
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380
Query: 549 ILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFLT 584
L + N L +M N+++ L
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Score = 76.8 bits (189), Expect = 6e-15
Identities = 65/437 (14%), Positives = 139/437 (31%), Gaps = 65/437 (14%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
LQ+I + L L + N V + ++ + L
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 222 IDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQK----------LTNLTVLDLSHN--N 269
L+ + T +L + + + L L LS+ N
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231
Query: 270 HQDINFVQESMSQKLTNLIVLDLSHNKLS-------ELPDFLNFKVLKELDISHNNFESM 322
++ + +S+ +L+++ + +L F + ++ L+I +
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291
Query: 323 PLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK--PRC 380
+ + + + F L F ++ +S + +H P
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351
Query: 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF 440
+ + N+ Q LK L + L+ N
Sbjct: 352 PSSFTFLNFTQNVFTDSVF----QGCSTLKR-----------------LQTLILQRN--- 387
Query: 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSS 500
L + A + N+S L+ L N ++ W + +L LSS
Sbjct: 388 -GLKNF--FKVALMTKNMSSLETLD-----VSLNSLNSHAYDRTCA--WAESILVLNLSS 437
Query: 501 IQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTML 560
L+ C+P ++ L++ +N++ +P+ +L++L+ L+V+ N+L +
Sbjct: 438 NM---LTGSVFRCLPPK------VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488
Query: 561 PDG-FVMLSNLTTFYAQ 576
PDG F L++L +
Sbjct: 489 PDGVFDRLTSLQYIWLH 505
Score = 53.7 bits (129), Expect = 1e-07
Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 24/174 (13%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
+ + L+ N + V + + + +
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402
Query: 222 IDTEL--NCCNKQYHDIF-----------TVNLSHQDINFVQESMSQKLT-NLTVLDLSH 267
E N + +NLS N + S+ + L + VLDL +
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS---NMLTGSVFRCLPPKVKVLDLHN 459
Query: 268 NNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNF 319
N I L L L+++ N+L +PD F L+ + + N +
Sbjct: 460 NRIMSIP----KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Score = 45.2 bits (107), Expect = 5e-05
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKL 557
+ SN L +P+D+ + L++S N + +L + L L++L +S+N++
Sbjct: 31 ELESMVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88
Query: 558 TMLPDG-FVMLSNLTTFY 574
L F+ +L
Sbjct: 89 RSLDFHVFLFNQDLEYLD 106
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 103 bits (259), Expect = 8e-24
Identities = 63/347 (18%), Positives = 111/347 (31%), Gaps = 108/347 (31%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ V + + ++ V + + +N L+L NN I +Q + L +L VL L
Sbjct: 53 SNQFSKVVCTRRGLSEVPQGIP---SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQL 106
Query: 293 SHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES 350
N + ++ F L L++ N I FE
Sbjct: 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTV---------------------IPSGAFEY 145
Query: 351 MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLK 410
+ KL +L + +N I+ + F L
Sbjct: 146 LS--------KLRELWLRNNPIESIP---------------------SYAF--NRVPSLM 174
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
L++ L +E G F L +L KYL
Sbjct: 175 RLDLGE------------LKKLEYISEGAFEGLFNL---------------------KYL 201
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED-IGNLICLEKLNI 529
N + ++P ++ L ++EL +S I L L+KL +
Sbjct: 202 NLGM-----------CNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 530 SHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+++V + +F L SL L++++N L+ LP F L L +
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
Score = 79.0 bits (195), Expect = 8e-16
Identities = 61/299 (20%), Positives = 107/299 (35%), Gaps = 85/299 (28%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
NL +I +Q + L +L VL L N+ I ++ L +L L+L N L+
Sbjct: 81 NLMENNIQMIQADTFRHLHHLEVLQLGRNS---IRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
+P F L+EL + +N ES I F +P
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIES---------------------IPSYAFNRVP----- 171
Query: 358 HFCKLVKLDISH-NQIKILHKP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L++LD+ +++ + + L+ ++ +P + L+EL M
Sbjct: 172 ---SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL---TPLVGLEELEM 225
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
S NH G F L S LK L ++ ++
Sbjct: 226 SG-------------NHFPEIRPGSFHGL---------------SSLKKL----WVM-NS 252
Query: 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHN 532
+ + F L+S+ EL+L++ L+ +P D+ L L +L++ HN
Sbjct: 253 QVSLIERNAFDG-----------LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 72.5 bits (178), Expect = 1e-13
Identities = 52/280 (18%), Positives = 82/280 (29%), Gaps = 82/280 (29%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ L I ++ L +L L+L N + + + L+ L L L +N +
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNW---LTVIPSGAFEYLSKLRELWLRNNPI 159
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
+P F L LD+ + IS FE +
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELK--------------KL------EYISEGAFEGLF--- 196
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNM 414
L L++ IK + L+ M+ N P F L K+L +
Sbjct: 197 -----NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL--KKLWV 249
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ + + L E F L SL LN ++
Sbjct: 250 MN-------------SQVSLIERNAFDGLASL---------------------VELNLAH 275
Query: 475 DIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNC 513
N L LP + L + ELHL + NC
Sbjct: 276 -----------NNLSSLPHDLFTPLRYLVELHLHHNPWNC 304
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 101 bits (254), Expect = 3e-23
Identities = 64/347 (18%), Positives = 119/347 (34%), Gaps = 108/347 (31%)
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDL 292
+ V +++ V + +S TN +L+L N I ++ + + L +L +L L
Sbjct: 42 SNQFSKVICVRKNLREVPDGIS---TNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQL 95
Query: 293 SHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES 350
S N + + F L L++ N + I + F
Sbjct: 96 SRNHIRTIEIGAFNGLANLNTLELFDNRLTT---------------------IPNGAFVY 134
Query: 351 MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLK 410
+ KL +L + +N I+ + F L+
Sbjct: 135 LS--------KLKELWLRNNPIESIP---------------------SYAF--NRIPSLR 163
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
L++ L + G F L +L +YL
Sbjct: 164 RLDLGE------------LKRLSYISEGAFEGLSNL---------------------RYL 190
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNI 529
N + L E+P ++ L + EL LS L+ I L+ L+KL +
Sbjct: 191 NLAM-----------CNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 530 SHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+++ + +F NL+SL +++++N LT+LP F L +L +
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285
Score = 79.4 bits (196), Expect = 6e-16
Identities = 61/299 (20%), Positives = 110/299 (36%), Gaps = 85/299 (28%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
NL I ++ + + L +L +L LS N+ I ++ L NL L+L N+L+
Sbjct: 70 NLHENQIQIIKVNSFKHLRHLEILQLSRNH---IRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
+P+ F+ LKEL + +N ES I F +P
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIES---------------------IPSYAFNRIP----- 160
Query: 358 HFCKLVKLDISH-NQIKILHKP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L +LD+ ++ + + L+ ++ +IP + L EL++
Sbjct: 161 ---SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK---LDELDL 214
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
S NH+ G F L+ L +L ++ +
Sbjct: 215 SG-------------NHLSAIRPGSFQGLMHLQ------------KL-------WMI-QS 241
Query: 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHN 532
I + F N L S+ E++L++ L +P D+ L LE++++ HN
Sbjct: 242 QIQVIERNAFDN-----------LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 72.5 bits (178), Expect = 9e-14
Identities = 49/280 (17%), Positives = 87/280 (31%), Gaps = 82/280 (29%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ LS I ++ L NL L+L N + + L+ L L L +N +
Sbjct: 92 ILQLSRNHIRTIEIGAFNGLANLNTLELFDNR---LTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
+P F L+ LD+ + S IS FE +
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELK--------------RL------SYISEGAFEGLS--- 185
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELNM 414
L L+++ ++ + L ++ N + P F + L++L M
Sbjct: 186 -----NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWM 238
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ +++ E F NL SL +N ++
Sbjct: 239 IQ-------------SQIQVIERNAFDNLQSL---------------------VEINLAH 264
Query: 475 DIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNC 513
N L LP + L ++ +HL + NC
Sbjct: 265 -----------NNLTLLPHDLFTPLHHLERIHLHHNPWNC 293
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 101 bits (255), Expect = 3e-23
Identities = 55/318 (17%), Positives = 117/318 (36%), Gaps = 69/318 (21%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
L +T L + I+ V+ L NL ++ S+N+L+++ N L ++ +++
Sbjct: 45 LDQVTTLQADRLGIKSIDGVE-----YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 99
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
N + ++ L L + +NQI +
Sbjct: 100 NQIADIT-----------------------PLANLT--------NLTGLTLFNNQITDID 128
Query: 377 KPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436
+ L ++ N I L++L+ + +LK
Sbjct: 129 PLKNLTNLNRLELSSNTISDISAL---SGLTSLQQLSFGN-------------QVTDLKP 172
Query: 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL 496
+ L L + + +S++S L L N++ L +N N + ++ +
Sbjct: 173 LANLTTLERLDISSNK--VSDISVLAKLTNLESLIATN-----------NQISDIT-PLG 218
Query: 497 YLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNK 556
L+++ EL L+ QL I + +L L L++++N++ L + L L L + N+
Sbjct: 219 ILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ 276
Query: 557 LTMLPDGFVMLSNLTTFY 574
++ + L+ LT
Sbjct: 277 ISNIS-PLAGLTALTNLE 293
Score = 101 bits (253), Expect = 6e-23
Identities = 61/324 (18%), Positives = 124/324 (38%), Gaps = 77/324 (23%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
+ L NLT ++ S+N DI + + LT L+ + +++N+++++ N L L +
Sbjct: 65 EYLNNLTQINFSNNQLTDITPL-----KNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
+N + +++ L +L++S N I
Sbjct: 120 FNNQITDID-----------------------PLKNLT--------NLNRLELSSNTISD 148
Query: 375 LHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD----PFFEHLPIWLLN 430
+ +LQ S + + P L+ L++SS L
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKP----LANLTTLERLDISSNKVSDISVLAKLT----- 199
Query: 431 HMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
NL SL N +S+++ L L N+ L+ + N L +
Sbjct: 200 -----------NLESLIATNNQ--ISDITPLGILTNLDELSLNG-----------NQLKD 235
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550
+ ++ L+++ +L L+N Q++ + + L L +L + N++ + A L +L L
Sbjct: 236 IG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS-PLAGLTALTNL 292
Query: 551 DVSYNKLTMLPDGFVMLSNLTTFY 574
+++ N+L + L NLT
Sbjct: 293 ELNENQLEDIS-PISNLKNLTYLT 315
Score = 100 bits (251), Expect = 1e-22
Identities = 51/320 (15%), Positives = 117/320 (36%), Gaps = 71/320 (22%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
L L N D + L + L + + L +++ S
Sbjct: 22 ALAEKMKTVLGKTNVTDTVSQTD-----LDQVTTLQADRLGIKSIDGVEYLNNLTQINFS 76
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
+N + +++ KLV + +++NQI +
Sbjct: 77 NNQLTDIT-----------------------PLKNLT--------KLVDILMNNNQIADI 105
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHM-EL 434
L ++ +N +I + + L L +SS N + ++
Sbjct: 106 TPLANLTNLTGLTLFNN---QITDIDPLKNLTNLNRLELSS-------------NTISDI 149
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS 494
++L L N ++++ L L ++ L+ S+ N + ++
Sbjct: 150 SALSGLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISS-----------NKVSDIS-V 194
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSY 554
+ L++++ L +N Q++ I +G L L++L+++ N++ + + A+L +L LD++
Sbjct: 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN 252
Query: 555 NKLTMLPDGFVMLSNLTTFY 574
N+++ L L+ LT
Sbjct: 253 NQISNLA-PLSGLTKLTELK 271
Score = 90.4 bits (225), Expect = 2e-19
Identities = 57/311 (18%), Positives = 100/311 (32%), Gaps = 73/311 (23%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
KLTNL L ++N DI + LTNL L L+ N+L ++ + L +LD+
Sbjct: 196 AKLTNLESLIATNNQISDITPLG-----ILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 250
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
++N ++ + KL +L + NQI
Sbjct: 251 ANNQISNLA-----------------------PLSGLT--------KLTELKLGANQISN 279
Query: 375 LHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS----STDPFFEHLPIWLLN 430
+ L +N N I L L + S L
Sbjct: 280 ISPLAGLTALTNLELNENQLEDISPI---SNLKNLTYLTLYFNNISDISPVSSLT----- 331
Query: 431 HMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
L L N +S+VS L L NI +L+ + N + +
Sbjct: 332 -----------KLQRLFFYNNK--VSDVSSLANLTNINWLSAGH-----------NQISD 367
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKIL 550
L + L+ I +L L++ P + + + + P + ++ S
Sbjct: 368 LT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEP 426
Query: 551 DVSYNKLTMLP 561
D+++N +
Sbjct: 427 DITWNLPSYTN 437
Score = 90.4 bits (225), Expect = 2e-19
Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 68/317 (21%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
LT L LD+S N DI+ + KLTNL L ++N++S++ L EL ++
Sbjct: 175 NLTTLERLDISSNKVSDISVLA-----KLTNLESLIATNNQISDITPLGILTNLDELSLN 229
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N + + S+ L LD+++NQI L
Sbjct: 230 GNQLKDIG-----------------------TLASLT--------NLTDLDLANNQISNL 258
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHME-L 434
L + N I L L ++ N +E +
Sbjct: 259 APLSGLTKLTELKLGANQISNISPLAGLTA---LTNLELNE-------------NQLEDI 302
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS 494
NL L + +S++S + L ++ L N N + ++ S
Sbjct: 303 SPISNLKNLTYLTLYFNN--ISDISPVSSLTKLQRLFFYN-----------NKVSDVS-S 348
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSY 554
+ L++I L + Q++ + + NL + +L ++ P ++ S+ +
Sbjct: 349 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407
Query: 555 NKLTMLPDGFVMLSNLT 571
+ P + T
Sbjct: 408 TGALIAPATISDGGSYT 424
Score = 76.2 bits (188), Expect = 8e-15
Identities = 43/303 (14%), Positives = 79/303 (26%), Gaps = 86/303 (28%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
LTNLT LDL++N ++ + LT L L L N++S + L L+++
Sbjct: 241 SLTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQISNISPLAGLTALTNLELN 295
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N E + ++ L L + N I +
Sbjct: 296 ENQLEDIS-----------------------PISNLK--------NLTYLTLYFNNISDI 324
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
LQ +N + +L
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSS---------------------LANLT---------- 353
Query: 436 ENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSI 495
N+ L + +S+++ L L I L ++ P++
Sbjct: 354 ------NINWLSAGHNQ--ISDLTPLANLTRITQLGLND-----------QAWTNAPVNY 394
Query: 496 LYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYN 555
SI + P I + + +I+ N E +
Sbjct: 395 KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454
Query: 556 KLT 558
+
Sbjct: 455 TFS 457
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 98.5 bits (246), Expect = 7e-23
Identities = 66/345 (19%), Positives = 109/345 (31%), Gaps = 109/345 (31%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ + + + V + ++ T L+L N + + + KLT L L LS N L
Sbjct: 11 EIRCNSKGLTSVPTGIP---SSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 298 SELP----DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL 353
S LK LD+S N +M +NF +
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVITMS----------------------SNFLGLE- 101
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413
+L LD H+ +K + + F N L L+
Sbjct: 102 -------QLEHLDFQHSNLKQMSEFS------VFLSLRN----------------LIYLD 132
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473
+S H + NG+F+ L S L+ L + +
Sbjct: 133 ISH-------------THTRVAFNGIFNGL---------------SSLEVL----KMAGN 160
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHN 532
+ ++ F L ++ L LS QL + +L L+ LN+SHN
Sbjct: 161 SFQENFLPDIFTE-----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 533 KVYKLPES-FANLKSLKILDVSYNKLTMLPDG--FVMLSNLTTFY 574
+ L + L SL++LD S N + S+L
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 92.9 bits (232), Expect = 3e-22
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 11/111 (9%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLIC 523
L L L L ++ L +L +L + +G L
Sbjct: 3 LPEKSKLQEIY-----------QELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPE 51
Query: 524 LEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
KL + ++ +L + L L Y +LT L L +
Sbjct: 52 KSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQ 102
Score = 92.1 bits (230), Expect = 5e-22
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 11/111 (9%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLIC 523
L L L L ++ L +L +L + +G L
Sbjct: 26 LPEKSKLQEIY-----------QELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPE 74
Query: 524 LEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
KL + ++ +L + L L Y +LT L L +
Sbjct: 75 KSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQ 125
Score = 89.4 bits (223), Expect = 5e-21
Identities = 28/216 (12%), Positives = 48/216 (22%), Gaps = 61/216 (28%)
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF 420
+ KL + ++ L L +L +
Sbjct: 5 EKSKLQEIYQELTRL--KAAVGELPE----------------------KSKLQEIYQE-- 38
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKY-------LKNIKYLNCS 473
L G L +L L L
Sbjct: 39 LTRLK---------AAVGELPEKSKLQEIYQ--------ELTRLKAAVGELPEKSKLQEI 81
Query: 474 NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK 533
L L ++ L +L +L + +G L KL + +
Sbjct: 82 Y-----------QELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQE 130
Query: 534 VYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSN 569
+ +L + L Y +LT L F L +
Sbjct: 131 LTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLGH 166
Score = 87.9 bits (219), Expect = 1e-20
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 11/116 (9%)
Query: 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI 518
+ + L L L L ++ L +L +L + +
Sbjct: 44 AAVGELPEKSKLQEIY-----------QELTRLKAAVGELPEKSKLQEIYQELTRLKAAV 92
Query: 519 GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
G L KL + ++ +L + L L Y +LT L L + +
Sbjct: 93 GELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQ 148
Score = 67.5 bits (166), Expect = 2e-13
Identities = 11/142 (7%), Positives = 42/142 (29%), Gaps = 23/142 (16%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+Q++ ++ ++ + L + L + + ++ ++ + L L + +L+
Sbjct: 10 QEIYQELTRLKAAVGE-LPEKSKLQEIYQE---LTRLKAAVGE-LPEKSKLQEIYQELTR 64
Query: 300 LPDFL-NFKVLKELDISHNNFESMPLCLQ-----VHFYVHIPYKHSQSDISHNNFESMPL 353
L + +L + + + + +
Sbjct: 65 LKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQE-----------IYQELTELKA 113
Query: 354 CLQVHFCKLVKLDISHNQIKIL 375
+ + KL + ++ L
Sbjct: 114 AVG-ELPEKSKLQEIYQELTQL 134
Score = 65.9 bits (162), Expect = 7e-13
Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 30/130 (23%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL-NFKVLKELDI 314
+L + L + + ++ ++ + L L + +L+ L + +L
Sbjct: 2 ELPEKSKLQEIYQE---LTRLKAAVGE-LPEKSKLQEIYQELTRLKAAVGELPEKSKLQE 57
Query: 315 SHNNFESMP---------LCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKL 365
+ + L + + + + KL
Sbjct: 58 IYQELTRLKAAVGELPEKSKL---------------QEIYQELTRLKAAVG-ELPEKSKL 101
Query: 366 DISHNQIKIL 375
+ ++ L
Sbjct: 102 QEIYQELTEL 111
Score = 63.2 bits (155), Expect = 5e-12
Identities = 10/143 (6%), Positives = 39/143 (27%), Gaps = 25/143 (17%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+Q++ ++ ++ + L + L + + ++ ++ + L L + +L+
Sbjct: 33 QEIYQELTRLKAAVGE-LPEKSKLQEIYQE---LTRLKAAVGE-LPEKSKLQEIYQELTR 87
Query: 300 LPDFL-NFKVLKELDISHNNFESMPLC------LQVHFYVHIPYKHSQSDISHNNFESMP 352
L + +L + + + +
Sbjct: 88 LKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSK------------LQEIYQELTQLK 135
Query: 353 LCLQVHFCKLVKLDISHNQIKIL 375
+ K + ++ L
Sbjct: 136 AAV-GELPDQSKQQQIYQELTDL 157
Score = 62.5 bits (153), Expect = 1e-11
Identities = 12/56 (21%), Positives = 19/56 (33%)
Query: 519 GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
G L KL + ++ +L + L L Y +LT L L +
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQ 56
Score = 60.2 bits (147), Expect = 6e-11
Identities = 22/247 (8%), Positives = 46/247 (18%), Gaps = 92/247 (37%)
Query: 283 KLTNLIVLDLSHNKLSELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS 341
+L L + +L+ L + +L + + +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK-----------------A 44
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
+ L + KL + ++ L
Sbjct: 45 AVGE---------LP----EKSKLQEIYQELTRL----------------------KAAV 69
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
E +L + L + G L +L
Sbjct: 70 G--ELPEKSKLQEIYQE--LTRLKAAV---------GELPEKSKLQEIY--------QEL 108
Query: 462 KYL-------KNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI 514
L L L +L ++ L + +L +
Sbjct: 109 TELKAAVGELPEKSKLQEIY-----------QELTQLKAAVGELPDQSKQQQIYQELTDL 157
Query: 515 PEDIGNL 521
L
Sbjct: 158 KTAFERL 164
Score = 55.9 bits (136), Expect = 2e-09
Identities = 7/85 (8%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+Q++ ++ ++ + L + L + + ++ ++ + L L + +L++
Sbjct: 79 QEIYQELTRLKAAVGE-LPEKSKLQEIYQE---LTELKAAVGE-LPEKSKLQEIYQELTQ 133
Query: 300 LPDFL-NFKVLKELDISHNNFESMP 323
L + + + +
Sbjct: 134 LKAAVGELPDQSKQQQIYQELTDLK 158
Score = 44.0 bits (105), Expect = 2e-05
Identities = 6/63 (9%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+Q++ ++ ++ + L + L + + ++ ++ + L + + +L++
Sbjct: 102 QEIYQELTELKAAVGE-LPEKSKLQEIYQE---LTQLKAAVGE-LPDQSKQQQIYQELTD 156
Query: 300 LPD 302
L
Sbjct: 157 LKT 159
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 96.9 bits (241), Expect = 2e-21
Identities = 64/358 (17%), Positives = 108/358 (30%), Gaps = 58/358 (16%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+SH I ++ S+ + L LDLSHN I+ NL LDLS N
Sbjct: 51 IISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC------HPTVNLKHLDLSFNAFDA 104
Query: 300 LPD---FLNFKVLKELDISHNNFESMPLCLQVHF-YVHIPYKHSQSDISHNNFESMPLCL 355
LP F N LK L +S + E + H + ++ + E
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG----- 159
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L + I F N + L L +
Sbjct: 160 ------LQDFNTESLHI-------------VFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN- 474
D + L N SNL +++ T + QL + + Y + SN
Sbjct: 201 LEDNKCSYFLSILAKLQ---TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 475 ----DIDHRKSQDFVNVLWELPLSILY--------------LSSIQELHLSNVQLNCIPE 516
+D R L L + + S++ + + +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317
Query: 517 DI-GNLICLEKLNISHNKVYKLP-ESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
+ L+ S+N + E+ +L L+ L + N+L L M + + +
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375
Score = 92.2 bits (229), Expect = 6e-20
Identities = 65/380 (17%), Positives = 117/380 (30%), Gaps = 70/380 (18%)
Query: 237 FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNK 296
F V+ S + V + +S T+L++S N I+ + S L+ L +L +SHN+
Sbjct: 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNY---ISELWTSDILSLSKLRILIISHNR 56
Query: 297 LSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFES 350
+ L F + L+ LD+SHN I + + D+S N F++
Sbjct: 57 IQYLDISVFKFNQELEYLDLSHNKLVK------------ISCHPTVNLKHLDLSFNAFDA 104
Query: 351 MPLCLQVHFCKLVKL---DISHNQIK------------------------------ILHK 377
+P+C + F + +L +S ++ L
Sbjct: 105 LPICKE--FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162
Query: 378 PRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKEN 437
F N + L L + D + L N
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ---TN 219
Query: 438 GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY 497
SNL +++ T + QL + + Y + SN + S
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN-----VKLQGQLDFRDFDYSGTS 274
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L ++ + + I + N + + + + + LD S N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
LT L+ L T
Sbjct: 335 LLTDTVFENCGHLTELETLI 354
Score = 72.2 bits (177), Expect = 1e-13
Identities = 55/443 (12%), Positives = 138/443 (31%), Gaps = 75/443 (16%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
L I V L+ L + N + K K + + +
Sbjct: 81 LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140
Query: 222 IDTELNC-------------CNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHN 268
L + + V ++++ +F+ + + + NL + ++
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 269 NHQDINFVQESMSQKLT--------NLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFE 320
+ S+ KL L ++ + N + + + IS+ +
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260
Query: 321 SMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRC 380
+ S + + F + F + + + + +++H
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320
Query: 381 THTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVF 440
+ L+ S+ N +
Sbjct: 321 SKISP-----------------------FLHLDFSN-------------NLLTDTVFENC 344
Query: 441 SNLISLHM----QNTAAVMSNVSQL-KYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLS 494
+L L N +S ++++ +K+++ L+ S N + + + + +
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-------- 396
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSY 554
+ S+ L++S+ L ++ L++ NK+ +P+ L++L+ L+V+
Sbjct: 397 --WTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS 453
Query: 555 NKLTMLPDG-FVMLSNLTTFYAQ 576
N+L +PDG F L++L +
Sbjct: 454 NQLKSVPDGIFDRLTSLQKIWLH 476
Score = 71.8 bits (176), Expect = 2e-13
Identities = 56/412 (13%), Positives = 132/412 (32%), Gaps = 69/412 (16%)
Query: 168 DILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELN 227
+ QL+ L + + P L + T E +
Sbjct: 112 GNMSQLKFLGLSTTHLE------KSSVLPIAHLNISKVLLVLGETYGEKEDPEGL----- 160
Query: 228 CCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLT-- 285
+ + V ++++ +F+ + + + NL + ++ + S+ KL
Sbjct: 161 -QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219
Query: 286 ------NLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHS 339
L ++ + N + + + IS+ + + S
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279
Query: 340 QSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTH--TLQTFSMNHNIGMKI 397
+ + F + F + + + + +++H + ++N
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN----- 334
Query: 398 PEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKEN---------GVFSNLISLHM 448
L + + HL L + L+ N + + + SL
Sbjct: 335 ----------LLTDTVFEN----CGHLT--ELETLILQMNQLKELSKIAEMTTQMKSLQQ 378
Query: 449 ----QNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQEL 504
QN+ + + K++ LN S+ N+L + L I+ L
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSS-----------NILTDTIFRCL-PPRIKVL 426
Query: 505 HLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L + ++ IP+ + L L++LN++ N++ +P+ F L SL+ + + N
Sbjct: 427 DLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 64.5 bits (157), Expect = 5e-11
Identities = 56/431 (12%), Positives = 131/431 (30%), Gaps = 76/431 (17%)
Query: 161 ELQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDI 217
+Q ++ + +LE L + +N KL +
Sbjct: 56 RIQYLDISVFKFNQELEYLDLSHN-----------------KLVKISCHPTVNL------ 92
Query: 218 AMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQ 277
L+ + + F ++ L L LS + + + +
Sbjct: 93 ------KHLDLSFNAFDAL------PICKEF------GNMSQLKFLGLSTTHLEKSSVLP 134
Query: 278 ESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK-ELDISHNNFESMPLCLQVHFYVHIPY 336
+ L+VL ++ + + +F + N L + V ++
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 337 KHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMK 396
+ + + N L +++ N I+ + + +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT--WNSFIRILQLVWHTTVWYF 252
Query: 397 IPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLL--NHMELKENGVFSNLISLHMQNTAAV 454
Q L ++ + S T + L I + + ++ ++ +++++N
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTS--LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT-- 308
Query: 455 MSNVSQL-----KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSN 508
+S + + +L+ SN N+L + +L+ ++ L L
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSN-----------NLLTDTVFENCGHLTELETLILQM 357
Query: 509 VQLNCIPEDIG---NLICLEKLNISHNKVYKL--PESFANLKSLKILDVSYNKLTMLPDG 563
QL + + + L++L+IS N V + KSL L++S N LT
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417
Query: 564 FVMLSNLTTFY 574
+ +
Sbjct: 418 -CLPPRIKVLD 427
Score = 57.6 bits (139), Expect = 7e-09
Identities = 44/288 (15%), Positives = 93/288 (32%), Gaps = 85/288 (29%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+ F Q + + +N+ + + + + + V K++ + LD S+N L++
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR---MVHMLCPSKISPFLHLDFSNNLLTD 338
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
+ L+ L + N + + ++ M
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEM-------------------TTQMK----- 374
Query: 358 HFCKLVKLDISHNQIK-ILHKPRCTH--TLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L +LDIS N + K C+ +L + +M+ N + + + +K L++
Sbjct: 375 ---SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN---ILTDTIFRCLPPRIKVLDL 428
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
S N ++ V L+ ++ LN ++
Sbjct: 429 HS-------------NKIKSIPKQVVK----------------------LEALQELNVAS 453
Query: 475 DIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDIGNL 521
N L +P I L+S+Q++ L +C I L
Sbjct: 454 -----------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 490
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 93.6 bits (233), Expect = 6e-21
Identities = 50/332 (15%), Positives = 106/332 (31%), Gaps = 91/332 (27%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
+ LDLS+N I ++ S Q+ NL L L+ N ++ + + F + L+ LD+S
Sbjct: 52 EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
+N + +S + F+ + L L++ N K L
Sbjct: 109 YNYLSN---------------------LSSSWFKPLS--------SLTFLNLLGNPYKTL 139
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
+ F L +L + + + N
Sbjct: 140 GETSL-------------------------FSHLTKLQI-----------LRVGNMDTFT 163
Query: 436 E--NGVFSNL-----ISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNV 487
+ F+ L + + + + LK ++N+ +L
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKS--LKSIQNVSHLILHMKQHILLLEIFVDV- 220
Query: 488 LWELPLSILYLSSIQELHLSNVQLNCIPEDI----GNLICLEKLNISHNKVYKLPESFAN 543
S + +++ L + + + I+ ++++ +
Sbjct: 221 -----TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Query: 544 LKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+ L L+ S N+L +PDG F L++L +
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307
Score = 89.4 bits (222), Expect = 1e-19
Identities = 52/301 (17%), Positives = 99/301 (32%), Gaps = 55/301 (18%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS+ I ++ S Q+ NL L L+ N IN ++E L +L LDLS+N LS
Sbjct: 58 DLSNNRITYISNSDLQRCVNLQALVLTSNG---INTIEEDSFSSLGSLEHLDLSYNYLSN 114
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLC-----LQVHFYVHIPYKHSQSDISHNNFESMP 352
L F L L++ N ++++ L + + + + I +F +
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174
Query: 353 LCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
L +L+I + ++ P+ + + L
Sbjct: 175 --------FLEELEIDASDLQSYE---------------------PKSL--KSIQNVSHL 203
Query: 413 NMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNC 472
+ L S+ + L + +
Sbjct: 204 ILHM-------------KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISH 531
R + L+++ + +S + EL S QL +P+ I L L+K+ +
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
Query: 532 N 532
N
Sbjct: 311 N 311
Score = 49.7 bits (119), Expect = 1e-06
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQ-----ESMSQKLTNLIVLDL 292
+ L + + E +++ L+L + +F + + K + +
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261
Query: 293 SHNKLSELPD-FLNFKVLKELDISHNNFESMP 323
+ L ++ L EL+ S N +S+P
Sbjct: 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293
Score = 46.7 bits (111), Expect = 1e-05
Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 22/166 (13%)
Query: 162 LQSIEDDI---LVQLECLHIDNNKAQEYIVSM--NVDRTPGFKLQNNDNDQNTKV-TNAM 215
I+ L LE L ID + Q Y ++ L Q+ + +
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK---QHILLLEIFV 218
Query: 216 DIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINF 275
D+ + EL D +++ + + K + ++ + +
Sbjct: 219 DVTSSVECLEL-------RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-- 269
Query: 276 VQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNF 319
+ +++ L+ L+ S N+L +PD F L+++ + N +
Sbjct: 270 --MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 92.8 bits (231), Expect = 3e-20
Identities = 54/316 (17%), Positives = 98/316 (31%), Gaps = 53/316 (16%)
Query: 259 NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNN 318
N + Q + + E +L L LD ++ ++++ L +L + NN
Sbjct: 19 NFASEVAAAFEMQATDTISEE---QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN 75
Query: 319 FESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP 378
++ L + N ++ + KL L+ N++ L
Sbjct: 76 ITTLDLSQNTNLT--------YLACDSNKLTNLDVT---PLTKLTYLNCDTNKLTKLDVS 124
Query: 379 RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENG 438
+ L + N L E+++S L L + +
Sbjct: 125 QNPL-LTYLNCARN---------------TLTEIDVSHN-TQLTELDCHLNKKITKLDVT 167
Query: 439 VFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYL 498
+ L +L +VSQ K + LNC N + +L L+
Sbjct: 168 PQTQLTTLDCSFNKITELDVSQ---NKLLNRLNCDT-----------NNITKLDLN--QN 211
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
+ L S+ +L I D+ L L + S N + +L S L L L L
Sbjct: 212 IQLTFLDCSSNKLTEI--DVTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDLL 267
Query: 559 MLPDGFVMLSNLTTFY 574
+ + L F
Sbjct: 268 EID--LTHNTQLIYFQ 281
Score = 84.4 bits (209), Expect = 2e-17
Identities = 53/328 (16%), Positives = 95/328 (28%), Gaps = 79/328 (24%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L + + T LT LD S N +++ + L L+ N +++
Sbjct: 152 ELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV------SQNKLLNRLNCDTNNITK 205
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
L D L LD S N + + + + D S N + +
Sbjct: 206 L-DLNQNIQLTFLDCSSNKLTEIDVTPLT--------QLTYFDCSVNPLTELDVS---TL 253
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDP 419
KL L + + T L F +KEL+++
Sbjct: 254 SKLTTLHCIQTDLLEIDLTHNTQ-LIYFQAEGCRK--------------IKELDVTH--- 295
Query: 420 FFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHR 479
+ L L Q ++SQ + YL +N
Sbjct: 296 --------------------NTQLYLLDCQAAGITELDLSQ---NPKLVYLYLNN----- 327
Query: 480 KSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE 539
L EL +S + + ++ L N + +G + L + + +P+
Sbjct: 328 ------TELTELDVS--HNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPK 378
Query: 540 SFANLKSL------KILDVSYNKLTMLP 561
SL +LD N + + P
Sbjct: 379 ETLTNNSLTIAVSPDLLDQFGNPMNIEP 406
Score = 58.5 bits (142), Expect = 3e-09
Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 29/196 (14%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
L ++ L +L LH E ++ N Q + ++ + +
Sbjct: 245 LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI---YFQAEGCRKIKELDVTHNTQLY- 300
Query: 222 IDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMS 281
L+C I ++LS + L L L++ +++
Sbjct: 301 ---LLDCQAAG---ITELDLS-------------QNPKLVYLYLNNTELTELDV------ 335
Query: 282 QKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS 341
T L L + + + L + +MP + + I
Sbjct: 336 SHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395
Query: 342 DISHNNFESMPLCLQV 357
D N P V
Sbjct: 396 DQFGNPMNIEPGDGGV 411
Score = 32.7 bits (75), Expect = 0.32
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 506 LSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFV 565
L Q + + ++ + S L +L LD + +T + G
Sbjct: 3 LKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIE 61
Query: 566 MLSNLTTFY 574
L+ LT
Sbjct: 62 KLTGLTKLI 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 82.8 bits (205), Expect = 1e-17
Identities = 42/309 (13%), Positives = 98/309 (31%), Gaps = 89/309 (28%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
L N + +N D + L + L ++ + L L++
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQAD-----LDGITTLSAFGTGVTTIEGVQYLNNLIGLELK 71
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N + +++ K+ +L++S N +K +
Sbjct: 72 DNQITDLA-----------------------PLKNLT--------KITELELSGNPLKNV 100
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
+++T + +I + L+ L +
Sbjct: 101 SAIAGLQSIKTLDLTST---QITDVTPLAGLSNLQVLYLDL------------------- 138
Query: 436 ENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSI 495
N I+ N+S L L N++YL+ N + +L +
Sbjct: 139 ------NQIT-----------NISPLAGLTNLQYLSIGN-----------AQVSDLT-PL 169
Query: 496 LYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYN 555
LS + L + +++ I + +L L ++++ +N++ + AN +L I+ ++
Sbjct: 170 ANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQ 227
Query: 556 KLTMLPDGF 564
+T P +
Sbjct: 228 TITNQPVFY 236
Score = 60.1 bits (146), Expect = 4e-10
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS 499
+NLI L +++ +++++ LK L I L S N L + +I L
Sbjct: 62 LNNLIGLELKDNQ--ITDLAPLKNLTKITELELSG-----------NPLKNVS-AIAGLQ 107
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTM 559
SI+ L L++ Q+ + + L L+ L + N++ + A L +L+ L + +++
Sbjct: 108 SIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD 165
Query: 560 LPDGFVMLSNLTTFYAQ 576
L LS LTT A
Sbjct: 166 L-TPLANLSKLTTLKAD 181
Score = 59.3 bits (144), Expect = 9e-10
Identities = 39/218 (17%), Positives = 73/218 (33%), Gaps = 40/218 (18%)
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD-- 418
+K+ + + + T S I Q L L +
Sbjct: 20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQIT 76
Query: 419 --PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDI 476
++L + L + + NVS + L++IK L+ ++
Sbjct: 77 DLAPLKNLT----------------KITELELSGNP--LKNVSAIAGLQSIKTLDLTS-- 116
Query: 477 DHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK 536
+ ++ + LS++Q L+L Q+ I + L L+ L+I + +V
Sbjct: 117 ---------TQITDVT-PLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD 165
Query: 537 LPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L ANL L L NK++ + L NL +
Sbjct: 166 L-TPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVH 201
Score = 55.1 bits (133), Expect = 2e-08
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
LTNL L + + D+ + L+ L L NK+S++ + L E+ +
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTPLA-----NLSKLTTLKADDNKISDISPLASLPNLIEVHL 202
Query: 315 SHNNFESMP 323
+N +
Sbjct: 203 KNNQISDVS 211
Score = 46.6 bits (111), Expect = 1e-05
Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 28/155 (18%)
Query: 170 LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELID-TELNC 228
L ++ L + + + + + L N ++TN +A L + L+
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN------QITNISPLA-GLTNLQYLSI 158
Query: 229 CNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLI 288
N Q D+ + L+ LT L N DI+ + L NLI
Sbjct: 159 GNAQVSDL---------------TPLANLSKLTTLKADDNKISDISPL-----ASLPNLI 198
Query: 289 VLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
+ L +N++S++ N L + +++ + P
Sbjct: 199 EVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP 233
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 82.6 bits (204), Expect = 2e-17
Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 21/140 (15%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
N + + K L VL L + + + V +++ L LDLSHN L +
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242
Query: 300 LPDFLNFKV---LKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMP 352
+ L L++S + +P L D+S+N + P
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGL------------PAKLSVLDLSYNRLDRNP 290
Query: 353 LCLQVHFCKLVKLDISHNQI 372
++ L + N
Sbjct: 291 SPD--ELPQVGNLSLKGNPF 308
Score = 68.0 bits (166), Expect = 1e-12
Identities = 42/309 (13%), Positives = 84/309 (27%), Gaps = 71/309 (22%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDF----LNFKVLKE 311
K +L L + ++ L L L + +++ L
Sbjct: 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQ 371
L++ + ++ + L + I+ + + F L LD+S N
Sbjct: 126 LNLRNVSWATRDAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184
Query: 372 IKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNH 431
I P F + L L+ M + L
Sbjct: 185 E--------------LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL------- 223
Query: 432 MELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWEL 491
++ L+ S+ N L +
Sbjct: 224 -----------------------------AAARVQLQGLDLSH-----------NSLRDA 243
Query: 492 PLSI--LYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKI 549
+ + S + L+LS L +P+ + L L++S+N++ + P S L +
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK--LSVLDLSYNRLDRNP-SPDELPQVGN 300
Query: 550 LDVSYNKLT 558
L + N
Sbjct: 301 LSLKGNPFL 309
Score = 58.4 bits (141), Expect = 2e-09
Identities = 42/329 (12%), Positives = 80/329 (24%), Gaps = 83/329 (25%)
Query: 259 NLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFLNFKVLKELD 313
+L L + D+ + + K +L L + ++ L L+EL
Sbjct: 44 SLEYLLKRVDTEADLGQFTDII--KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373
+ + + P L+ L L++ +
Sbjct: 102 LENLEV---------------------------TGTAPPPLLEATGPDLNILNLRNVSWA 134
Query: 374 ILHK------PRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIW 427
L+ S+ + + F L L++S
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSD----------- 182
Query: 428 LLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNV 487
N + + ++ L N
Sbjct: 183 --------------NPEL-----GERGLISALCPLKFPTLQVLALRN-------AGMETP 216
Query: 488 LWELPLSILYLSSIQELHLSNVQLNCIPEDIG--NLICLEKLNISHNKVYKLPESFANLK 545
+Q L LS+ L L LN+S + ++P+
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PA 274
Query: 546 SLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L +LD+SYN+L P L +
Sbjct: 275 KLSVLDLSYNRLDRNPS-PDELPQVGNLS 302
Score = 37.2 bits (86), Expect = 0.010
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
++NLS + V + + L+VLDLS+N +L + L L N
Sbjct: 257 SLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPS-----PDELPQVGNLSLKGNPF 308
Query: 298 SE 299
+
Sbjct: 309 LD 310
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 76.2 bits (188), Expect = 2e-15
Identities = 50/296 (16%), Positives = 87/296 (29%), Gaps = 102/296 (34%)
Query: 285 TNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSD 342
+ L N++S +P F + L L + N +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL---------------------AR 70
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHN-QIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
I F + L +LD+S N Q++ + TF
Sbjct: 71 IDAAAFTGLA--------LLEQLDLSDNAQLRSVDP-------ATFHGLGR--------- 106
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L L++ ++ G+F L + L
Sbjct: 107 -------LHTLHLDR-------------CGLQELGPGLFRGL---------------AAL 131
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GN 520
+YL YL N + F + L ++ L L +++ +PE
Sbjct: 132 QYL----YLQ-DNALQALPDDTFRD-----------LGNLTHLFLHGNRISSVPERAFRG 175
Query: 521 LICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L L++L + N+V + +F +L L L + N L+ LP L L
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231
Score = 69.6 bits (171), Expect = 3e-13
Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 19/168 (11%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L + + + L L LDLS N + V + L L L L L E
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQ--LRSVDPATFHGLGRLHTLHLDRCGLQE 119
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPL 353
L F L+ L + N +++P F + + + N S+P
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDT---F------RDLGNLTHLFLHGNRISSVPE 170
Query: 354 CLQVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPE 399
L +L + N++ +H R L T + N +P
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218
Score = 63.9 bits (156), Expect = 2e-11
Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 36/157 (22%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+L + + + + L L L L N + + + + L NL L L N++S
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNA---LQALPDDTFRDLGNLTHLFLHGNRISS 167
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
+P+ F L L + N + + F +
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAH---------------------VHPHAFRDLG----- 201
Query: 358 HFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHN 392
+L+ L + N + L LQ +N N
Sbjct: 202 ---RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 61.9 bits (151), Expect = 9e-11
Identities = 49/287 (17%), Positives = 75/287 (26%), Gaps = 98/287 (34%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-KLS 298
L I+ V + + NLT+L L N + + + L L LDLS N +L
Sbjct: 38 FLHGNRISHVPAASFRACRNLTILWLHSNV---LARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 299 ELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ F L L + + + F +
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQE---------------------LGPGLFRGLA---- 129
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
L L + N ++ L TF N L L +
Sbjct: 130 ----ALQYLYLQDNALQALPD-------DTFRDLGN----------------LTHLFLHG 162
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISL---HMQN------TAAVMSNVSQLKYLKNI 467
N + F L SL + ++ +L L
Sbjct: 163 -------------NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL--- 206
Query: 468 KYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNC 513
YL N L LP L L ++Q L L++ C
Sbjct: 207 -YLFA-------------NNLSALPTEALAPLRALQYLRLNDNPWVC 239
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 74.4 bits (182), Expect = 3e-14
Identities = 45/302 (14%), Positives = 90/302 (29%), Gaps = 15/302 (4%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
N D + +L + + + CL V F + +
Sbjct: 216 QNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLL 275
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW-Y 403
E+ + TF + E
Sbjct: 276 LMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLK 335
Query: 404 QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKY 463
C + + F L + ++ E L L +N +++ + ++
Sbjct: 336 DRPECWCRDSATDEQLFRCELSVEKSTVLQ-SELESCKELQELEPENKWCLLTIILLMRA 394
Query: 464 LKNIKYLNCSN---------DIDHRKSQDFV--NVLWELPLSILYLSSIQELHLSNVQLN 512
L + Y + D D + L E + + + ++ LHL++ L
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454
Query: 513 CIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
+ + L+ + L++SHN++ LP + A L+ L++L S N L + G L L
Sbjct: 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 512
Query: 573 FY 574
Sbjct: 513 LL 514
Score = 67.5 bits (164), Expect = 6e-12
Identities = 45/305 (14%), Positives = 102/305 (33%), Gaps = 30/305 (9%)
Query: 261 TVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL-SELPDFLNFKVLKELDISHNNF 319
T+L + + + + +++ + DL L +LP + D
Sbjct: 273 TLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECV 332
Query: 320 ESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPR 379
+ + ++S + L+ +L +L+ N+ +L
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE-SCKELQELEP-ENKWCLLTIIL 390
Query: 380 CTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGV 439
L Q F LK ++ + +LL + LK
Sbjct: 391 LMRALDPLLYEKET---------LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441
Query: 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS 499
++ L ++ ++ + L+ L + +L+ S+ N L LP ++ L
Sbjct: 442 DVRVLHLAHKD----LTVLCHLEQLLLVTHLDLSH-----------NRLRALPPALAALR 486
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKL 557
++ L S+ L + + NL L++L + +N++ + + L +L++ N L
Sbjct: 487 CLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Query: 558 TMLPD 562
Sbjct: 546 CQEEG 550
Score = 59.8 bits (144), Expect = 1e-09
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 225 ELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKL 284
E + +Y D+ ++L+H+D+ + ++L +T LDLSHN + + L
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRAL----PPALAAL 485
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
L VL S N L + N L+EL + +N +
Sbjct: 486 RCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524
Score = 55.9 bits (134), Expect = 2e-08
Identities = 40/264 (15%), Positives = 79/264 (29%), Gaps = 40/264 (15%)
Query: 157 FCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMD 216
H + I Q EC+ + + S ++ +L ++T + + ++
Sbjct: 313 LPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE---KSTVLQSELE 369
Query: 217 IAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSH-----NNHQ 271
EL + E NK + + D ++ Q + L +D +
Sbjct: 370 SCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427
Query: 272 DINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFY 331
+ + ++ VL L+H L+ L ++ LD+SHN ++P L
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA---- 483
Query: 332 VHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNH 391
L L S N ++ + LQ + +
Sbjct: 484 --------------------------ALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517
Query: 392 NIGMKIPEWFWYQEFLCLKELNMS 415
N + L LN+
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQ 541
Score = 51.7 bits (123), Expect = 5e-07
Identities = 52/387 (13%), Positives = 108/387 (27%), Gaps = 64/387 (16%)
Query: 173 LECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCNKQ 232
L + ++ + F + + +D A ++ +
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295
Query: 233 YHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESM-SQKLTNLIVLD 291
++ +L +N + ++ S L +
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE 355
Query: 292 LSHNKLSELPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES 350
LS K + L L + K L+EL+ N + + + L + + Y+
Sbjct: 356 LSVEKSTVLQSELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETLQ-------- 406
Query: 351 MPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLK 410
+F L +D + + M + L L
Sbjct: 407 -------YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD----------VRVLHLA 449
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
+++ E L + + H++L N L +L L L+ ++ L
Sbjct: 450 HKDLTVL-CHLEQLLL--VTHLDLSHN----RLRALP-----------PALAALRCLEVL 491
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPE--DIGNLICLEKLN 528
S+ N L + + L +QEL L N +L + + L LN
Sbjct: 492 QASD-----------NALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539
Query: 529 ISHNKVYKLPES----FANLKSLKILD 551
+ N + + L S+ +
Sbjct: 540 LQGNSLCQEEGIQERLAEMLPSVSSIL 566
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 71.8 bits (176), Expect = 9e-14
Identities = 56/340 (16%), Positives = 98/340 (28%), Gaps = 106/340 (31%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ + + N L + +Q+ +L +++S N +
Sbjct: 13 VFLCQESKVTEIPSDLP---RNAIELRFVLTK---LRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 298 SELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
E+ + F N L E+ I N ++ I+ F+++P
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKAN--------------NL------LYINPEAFQNLP-- 104
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L L IS+ IK L H+LQ L++
Sbjct: 105 ------NLQYLLISNTGIKHLPDVHKIHSLQ-----------------------KVLLDI 135
Query: 415 SSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
++ E F L + L +LN
Sbjct: 136 QD------------NINIHTIERNSFVGL--------------SFESVIL----WLNK-- 163
Query: 475 DIDHRKSQDFVNVLWELPLSILYLSSIQELHLS-NVQLNCIPEDI-GNLICLEKLNISHN 532
N + E+ S + + EL+LS N L +P D+ L+IS
Sbjct: 164 -----------NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212
Query: 533 KVYKLPE-SFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
+++ LP NLK L+ K + V L +
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEAS 252
Score = 62.9 bits (153), Expect = 7e-11
Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 49/280 (17%)
Query: 233 YHDIFTVNLSH-QDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLD 291
+ D+ + +S + ++ + L L + + N+ + ++ Q L NL L
Sbjct: 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--LLYINPEAFQNLPNLQYLL 110
Query: 292 LSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFE 349
+S+ + LPD ++ LDI N +I I N+F
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNI--------------NI------HTIERNSFV 150
Query: 350 SMPLCLQVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPE-WFW---Y 403
+ + V L ++ N I+ +H T + ++N ++P F
Sbjct: 151 GLSF-------ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203
Query: 404 QEFLCLKELNMSSTDPF-FEHLP-IWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ- 460
L + + S + E+L + + LK+ L++L A ++ S
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVAL----MEASLTYPSHC 259
Query: 461 ---LKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSIL 496
+ + I L+ N R+ D++ S+
Sbjct: 260 CAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLA 299
Score = 56.4 bits (136), Expect = 1e-08
Identities = 50/299 (16%), Positives = 83/299 (27%), Gaps = 94/299 (31%)
Query: 290 LDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFE 349
+K++E+P L + EL I F
Sbjct: 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRV---------------------IQKGAFS 51
Query: 350 SMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQ--TFSMNHNIGMKIPEWFWYQEFL 407
L K++IS N + ++ FS
Sbjct: 52 GFG--------DLEKIEISQNDV--------LEVIEADVFSNLPK--------------- 80
Query: 408 CLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISL---HMQNT------AAVMSNV 458
L E+ + N++ F NL +L + NT +
Sbjct: 81 -LHEIRIEKA------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Query: 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI 518
Q L + + +I + FV + +E L L+ + I
Sbjct: 128 LQKVLL----DIQDNINIHTIERNSFVGLSFES----------VILWLNKNGIQEIHNSA 173
Query: 519 GNLICLEKLNISH-NKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
N L++LN+S N + +LP F ILD+S ++ LP L L
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232
Score = 50.6 bits (121), Expect = 7e-07
Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 19/170 (11%)
Query: 162 LQSIEDDI---LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAM--D 216
L I + L L+ L I N + + L DN +
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 217 IAMELIDTELNCCNKQY--HDIF-------TVNLSHQDINFVQESMSQKLTNLTVLDLSH 267
++ E + LN Q + F + ++ + + + +LD+S
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
Query: 268 NNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHN 317
I+ + + L L L +LP L E +++
Sbjct: 212 TR---IHSLPSYGLENLKKLRARST--YNLKKLPTLEKLVALMEASLTYP 256
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 72.1 bits (176), Expect = 2e-13
Identities = 41/289 (14%), Positives = 94/289 (32%), Gaps = 86/289 (29%)
Query: 283 KLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSD 342
I +L +++ + ++ ++++ +S+
Sbjct: 19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ------------------- 59
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW 402
+ +P + KL ++ N++ + L ++ N KI
Sbjct: 60 ----GIQYLP--------NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN---KI----- 99
Query: 403 YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
+ L L SL +++ +S+++ L
Sbjct: 100 -------------KDLSSLKDLK----------------KLKSLSLEHNG--ISDINGLV 128
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
+L ++ L N N + ++ + L+ + L L + Q++ I + L
Sbjct: 129 HLPQLESLYLGN-----------NKITDIT-VLSRLTKLDTLSLEDNQISDI-VPLAGLT 175
Query: 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
L+ L +S N + L + A LK+L +L++ + P SNL
Sbjct: 176 KLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINH--QSNLV 221
Score = 69.8 bits (170), Expect = 1e-12
Identities = 52/322 (16%), Positives = 102/322 (31%), Gaps = 83/322 (25%)
Query: 224 TELNCCNKQYHDIF---------TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDIN 274
E + IF NL + + +L ++ + ++++ + +
Sbjct: 2 GETITVSTPIKQIFPDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQ 59
Query: 275 FVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHI 334
+Q L N+ L L+ NKL+++ N K L L + N
Sbjct: 60 GIQ-----YLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI--------------- 99
Query: 335 PYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIG 394
D+S + + + KL L + HN I ++ L++ + +N
Sbjct: 100 ------KDLS--SLKDLK--------KLKSLSLEHNGISDINGLVHLPQLESLYLGNN-- 141
Query: 395 MKIPEWFWYQEFLCLKELNMSSTD----PFFEHLPIWLLNHMELKENGVFSNLISLHMQN 450
KI + L L++ L L ++ L +N +
Sbjct: 142 -KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT--KLQNLYLSKNHI----------- 187
Query: 451 TAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQ 510
S++ L LKN+ L + K + + L + ++
Sbjct: 188 -----SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN----------TVKNTDGS 232
Query: 511 LNCIPEDIGNLICLEKLNISHN 532
L PE I + EK N+ +
Sbjct: 233 LVT-PEIISDDGDYEKPNVKWH 253
Score = 61.3 bits (148), Expect = 5e-10
Identities = 32/216 (14%), Positives = 74/216 (34%), Gaps = 54/216 (25%)
Query: 359 FCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD 418
F + +K ++ + +++ N++ +
Sbjct: 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-------------------- 59
Query: 419 PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDH 478
++LP N+ L + ++++ L LKN+ +L
Sbjct: 60 -GIQYLP----------------NVTKLFLNGNK--LTDIKPLTNLKNLGWLFLDE---- 96
Query: 479 RKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP 538
N + +L S+ L ++ L L + ++ I + +L LE L + +NK+ +
Sbjct: 97 -------NKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI- 146
Query: 539 ESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ L L L + N+++ + L+ L Y
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLY 181
Score = 60.9 bits (147), Expect = 6e-10
Identities = 25/171 (14%), Positives = 54/171 (31%), Gaps = 24/171 (14%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
L L L L +N DI + +LT L L L N++S++ L+ L +
Sbjct: 128 VHLPQLESLYLGNNKITDITVLS-----RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPLCLQVHFCKLVKLDISHN 370
S N+ + ++ ++ + P+ Q + + +
Sbjct: 183 SKNHISDLR-----------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231
Query: 371 QIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFF 421
+ + N+ +PE+ F+ + + + F
Sbjct: 232 SLVTPEIISDDGDYE----KPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 67.0 bits (164), Expect = 2e-12
Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 86/289 (29%)
Query: 283 KLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSD 342
I +L +++ + ++ ++++ +S+
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ------------------- 62
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFW 402
+ +P + KL ++ N++ + L ++ N
Sbjct: 63 ----GIQYLP--------NVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN---------- 100
Query: 403 YQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLK 462
+ + L L SL +++ +S+++ L
Sbjct: 101 ----------KVKDLSSL-KDLK----------------KLKSLSLEHNG--ISDINGLV 131
Query: 463 YLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
+L ++ L N N + ++ + L+ + L L + Q++ I + L
Sbjct: 132 HLPQLESLYLGN-----------NKITDIT-VLSRLTKLDTLSLEDNQISDI-VPLAGLT 178
Query: 523 CLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
L+ L +S N + L + A LK+L +L++ + P SNL
Sbjct: 179 KLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINH--QSNLV 224
Score = 61.2 bits (149), Expect = 2e-10
Identities = 42/305 (13%), Positives = 93/305 (30%), Gaps = 111/305 (36%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
+L ++ + ++++ + + +Q L N+ L L+ NKL+++ N K L L +
Sbjct: 43 NELNSIDQIIANNSDIKSVQGIQ-----YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFL 97
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
N D+S + + + KL L + HN I
Sbjct: 98 DENKV---------------------KDLS--SLKDLK--------KLKSLSLEHNGIS- 125
Query: 375 LHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMEL 434
+ L+ L +
Sbjct: 126 --------DINGLVHLPQ----------------LESLYLG------------------- 142
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS 494
+N I ++++ L L + L+ + N + ++
Sbjct: 143 ------NNKI-----------TDITVLSRLTKLDTLSLED-----------NQISDIV-P 173
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVS 553
+ L+ +Q L+LS ++ + + L L+ L + + P + +NL + +
Sbjct: 174 LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
Query: 554 YNKLT 558
L
Sbjct: 233 DGSLV 237
Score = 57.0 bits (138), Expect = 4e-09
Identities = 32/217 (14%), Positives = 74/217 (34%), Gaps = 54/217 (24%)
Query: 358 HFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417
F + +K ++ + +++ N++ +
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ------------------- 62
Query: 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDID 477
++LP N+ L + ++++ L LKN+ +L
Sbjct: 63 --GIQYLP----------------NVTKLFLNGNK--LTDIKPLANLKNLGWLFLDE--- 99
Query: 478 HRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKL 537
N + +L S+ L ++ L L + ++ I + +L LE L + +NK+ +
Sbjct: 100 --------NKVKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI 149
Query: 538 PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ L L L + N+++ + L+ L Y
Sbjct: 150 -TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLY 184
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 66.4 bits (163), Expect = 4e-12
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 490 ELPLSILYLSSIQELHLSNVQLNC-IPEDIGNLICLEKLNISHNKVY-KLPESFANLKSL 547
+ + + Q++HL+ L + + +G L L++ +N++Y LP+ LK L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 548 KILDVSYNKLT-MLPDGFVMLSNLTTFY 574
L+VS+N L +P G L
Sbjct: 271 HSLNVSFNNLCGEIPQGGN-LQRFDVSA 297
Score = 62.9 bits (154), Expect = 6e-11
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 490 ELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSL 547
+P +I L+ + L++++ ++ IP+ + + L L+ S+N + LP S ++L +L
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 548 KILDVSYNKLT-MLPDGFVMLSNLTTF 573
+ N+++ +PD + S L T
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTS 178
Score = 60.6 bits (148), Expect = 3e-10
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 491 LPLSILYLSSIQELHLSNV-QLN-CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSL 547
+P S+ L + L++ + L IP I L L L I+H V +P+ + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 548 KILDVSYNKLT-MLPDGFVMLSNLTTFY 574
LD SYN L+ LP L NL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGIT 155
Score = 59.5 bits (145), Expect = 9e-10
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 490 ELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICL-EKLNISHNKVY-KLPESFANLKS 546
LP SI L ++ + +++ IP+ G+ L + IS N++ K+P +FANL +
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N 198
Query: 547 LKILDVSYNKLT-MLPDGFVMLSNLTTFYAQR 577
L +D+S N L F N + +
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Score = 57.5 bits (140), Expect = 4e-09
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 20/124 (16%)
Query: 256 KLTNLTVLDLSHNNHQDINF---VQESMSQKLTNLIVLDLSHNKLS-ELPDFL-NFKVLK 310
KLT L L ++H N + + +SQ + L+ LD S+N LS LP + + L
Sbjct: 99 KLTQLHYLYITHTN-----VSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 311 ELDISHNNFE-SMPLCLQVHFYVHIPYKHSQSDISHNNFE-SMPLCLQVHFCKLVKLDIS 368
+ N ++P + IS N +P L +D+S
Sbjct: 153 GITFDGNRISGAIPDSYG-----SFSKLFTSMTISRNRLTGKIPPTFA--NLNLAFVDLS 205
Query: 369 HNQI 372
N +
Sbjct: 206 RNML 209
Score = 56.8 bits (138), Expect = 6e-09
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS-ELPDFL-NFKVLKELD 313
N + L+ N+ + F + NL LDL +N++ LP L K L L+
Sbjct: 219 SDKNTQKIHLAKNS---LAFDLGKVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 314 ISHNNFE 320
+S NN
Sbjct: 275 VSFNNLC 281
Score = 56.0 bits (136), Expect = 1e-08
Identities = 62/322 (19%), Positives = 107/322 (33%), Gaps = 88/322 (27%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH-NKLS-ELPDFL-NFKVLKEL 312
+ + LDLS N + S++ L L L + N L +P + L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 313 DISHNNFESMPLCLQVHFYVHIPYKHSQS------DISHNNFE-SMPLCLQVHFCKLVKL 365
I+H N IP SQ D S+N ++P + LV +
Sbjct: 107 YITHTNVSG-----------AIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGI 154
Query: 366 DISHNQI--KILHKPR----CTHTLQTFSMNHN--IGMKIPEWFWYQEFLCLKELNMSST 417
N+I I P + + +++ N G KIP F N++
Sbjct: 155 TFDGNRISGAI---PDSYGSFSKLFTSMTISRNRLTG-KIPPTFA----------NLN-- 198
Query: 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDID 477
L ++L N S KN + ++ +
Sbjct: 199 -----------LAFVDLSRNM-LEGDAS-------------VLFGSDKNTQKIHLAK--- 230
Query: 478 HRKSQDFVNVLW-ELPLSILYLSSIQELHLSNVQLN-CIPEDIGNLICLEKLNISHNKVY 535
N L +L + ++ L L N ++ +P+ + L L LN+S N +
Sbjct: 231 --------NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 536 -KLPESFANLKSLKILDVSYNK 556
++P+ NL+ + + NK
Sbjct: 282 GEIPQGG-NLQRFDVSAYANNK 302
Score = 41.0 bits (97), Expect = 8e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 514 IPEDIGNLICLEKLNISHNKVY---KLPESFANLKSLKILDVS-YNKLT-MLPDGFVMLS 568
+ + + L++S + +P S ANL L L + N L +P L+
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 569 NLTTFY 574
L Y
Sbjct: 102 QLHYLY 107
Score = 29.0 bits (66), Expect = 4.4
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 255 QKLTNLTVLDLSHNNHQ-DINFVQESMSQKLTNLIVLDLSHNK 296
+L L L++S NN +I L V ++NK
Sbjct: 265 TQLKFLHSLNVSFNNLCGEI-----PQGGNLQRFDVSAYANNK 302
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 1e-11
Identities = 95/582 (16%), Positives = 167/582 (28%), Gaps = 185/582 (31%)
Query: 28 EDNTDFGPDE-NEEPVPTQIDMEADISQLE-----APTFT--TITRGPPKPMLSLRWDHT 79
N F E + I Q + F ++R +P L LR
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLR---- 141
Query: 80 VHLIGEKVLNPIIHTCEKCEKPIMIYGRMICTIMK-FGKEITTVLEEDTNSGTQDTITNN 138
L L P K ++I G + GK T + D +
Sbjct: 142 QAL---LELRP--------AKNVLIDG------VLGSGK---TWV-------ALDVCLSY 174
Query: 139 SVE--MDEN----TVKTEALSTRTFCDHELQSIEDDILVQLE--CLHIDNNKAQEYIVSM 190
V+ MD +K C+ + +L L+ ID N S
Sbjct: 175 KVQCKMDFKIFWLNLKN--------CN-----SPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 191 NVDRTPG---------FKLQNN-------DNDQNTKVTNAMDIAME-LIDTELNCCNKQY 233
N+ K + N QN K NA +++ + L+ T KQ
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR----FKQV 277
Query: 234 HDIFT------VNLSHQDINFVQ-ESMSQ--KLTNLTVLDLSHNNHQDINFVQESMSQKL 284
D + ++L H + E S K + DL
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-------------EVLT 324
Query: 285 TNLIVLDLSHNKLSELPDFLNF-------KVLKELDISHNNFESMPLCLQVHFY------ 331
TN L + + + + K+ ++ S N E P + F
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLSVFP 382
Query: 332 --VHIPYK---------------------HSQSDISHNNFESMPLCLQVHFCKLVKLDIS 368
HIP H S + ES + + L +L +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST---ISIPSIYL-ELKVK 438
Query: 369 HNQIKILHKPRCTH--TLQTFSMNHNIGMKIPEW---FWYQEFLC--LKELNMSSTDPFF 421
LH+ H +TF + IP + ++Y + LK + F
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDD----LIPPYLDQYFYS-HIGHHLKNIEHPERMTLF 493
Query: 422 EHLPI---WL---LNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
+ + +L + H N + ++++ + QLK+ K Y+ ++
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNA------------SGSILNTLQQLKFYK--PYICDNDP 539
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPED 517
R ++ L ++ L S + +++ + ED
Sbjct: 540 KYERLVNAILDFLPKIE-ENLICSK----YTDLLRIALMAED 576
Score = 49.5 bits (117), Expect = 3e-06
Identities = 66/430 (15%), Positives = 135/430 (31%), Gaps = 101/430 (23%)
Query: 222 IDTELNCCNKQYHDIFTVNL----SHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQ 277
+D E QY DI +V + D VQ+ L+ ++I+ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-----------EEIDHII 55
Query: 278 ESMSQKLTNLIVLDLSHNKLSEL-PDFL------NFKVLKELDISHNNFESMPLCLQVHF 330
S L + +K E+ F+ N+K L + SM +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM---- 111
Query: 331 YVHIPYKHSQSDISHNN---FESMPLCLQVHFCKLVK--LDISHNQIKILH------KPR 379
Y+ Q D +N+ F + + KL + L++ + ++ K
Sbjct: 112 YI------EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-- 163
Query: 380 CT----HTLQTFSMNHNIGMKIPEWFW--------------YQEFLCLK-ELNMSSTDPF 420
T ++ + + KI FW + L + + N +S
Sbjct: 164 -TWVALDVCLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHM-QNTAAVMSNVSQLKYLKNIKYLNC------- 472
++ L ++ L+ +N V+ NV K L+C
Sbjct: 220 SSNIK---LRIHSIQAE--LRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTR 273
Query: 473 -SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH 531
D + ++ + L ++ L L L+C P+D+ + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKY-LDCRPQDLPREVL----TTNP 327
Query: 532 NKVYKLPESFANLKSL--KILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMF------- 582
++ + ES + + V+ +KLT + + L+ L ++ +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSA 385
Query: 583 -LTISLLCYL 591
+ LL +
Sbjct: 386 HIPTILLSLI 395
Score = 48.3 bits (114), Expect = 6e-06
Identities = 84/501 (16%), Positives = 146/501 (29%), Gaps = 136/501 (27%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
L ED + +C + Q+ S+ L + D +A+ + L
Sbjct: 22 LSVFEDAFVDNFDCKDV-----QDMPKSI---------LSKEEIDHIIMSKDAVSGTLRL 67
Query: 222 IDTELNCCNKQYHDIFTVNLSHQDINFVQESMS----QKLTNLTVLDLSHNNHQDIN--F 275
T L+ + F + + F+ + Q + + + N F
Sbjct: 68 FWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 276 VQESMS--QKLTNLIVLDLSHNKLSELPD---------------------FLNFKVLKE- 311
+ ++S Q L L EL L++KV +
Sbjct: 127 AKYNVSRLQPYLKL------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 312 ------LDISHNNFESMPLCLQVHFYVHI-PYKHSQSDISHN---NFESMPLCLQVHF-- 359
L++ + N L + I P S+SD S N S+ L+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 360 -----CKLVKLDISHNQI--------KILHKPR---------CTHTLQTFSMNHNIGMKI 397
C LV L++ + + KIL R T +H++ +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 398 PEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSN 457
E + L LK L+ D LP L N ++I+ +++ A N
Sbjct: 301 DE----VKSLLLKYLDCRPQD-----LP-----REVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 458 VSQLKY--LKNI--KYLNCSNDIDHRKS-QDFV----NVLWELP---LSILYLSSIQELH 505
+ L I LN ++RK + +P LS+++ I+
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKS-- 402
Query: 506 LSNVQLNCIPEDIGNLICLEKLNISHNK--VYKLP-------ESFANLKSL--KILDVSY 554
+ N + L K +P N +L I+D Y
Sbjct: 403 --------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HY 453
Query: 555 NKLTML-PDGFVMLSNLTTFY 574
N D + FY
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFY 474
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 64.2 bits (157), Expect = 1e-11
Identities = 60/302 (19%), Positives = 95/302 (31%), Gaps = 99/302 (32%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
+ LDLS N + + L VLDLS ++ + D + + L L ++
Sbjct: 28 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N +S+ F + L KL + L
Sbjct: 85 GNPIQSLA---------------------LGAFSGLS--------SLQKLVAVETNLASL 115
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHM-EL 434
L+T LKELN++ N +
Sbjct: 116 E-NFPIGHLKT----------------------LKELNVAH-------------NLIQSF 139
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS 494
K FSNL + L++L L+ SN I D L ++PL
Sbjct: 140 KLPEYFSNL---------------TNLEHL----DLS-SNKIQSIYCTDLRV-LHQMPLL 178
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVS 553
L L LS +N I I L++L + N++ +P+ F L SL+ + +
Sbjct: 179 NL------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232
Query: 554 YN 555
N
Sbjct: 233 TN 234
Score = 60.4 bits (147), Expect = 3e-10
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 8/130 (6%)
Query: 249 VQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD---FLN 305
+ L++L L N + + L L L+++HN + F N
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASL---ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKL 365
L+ LD+S N +S+ +P + D+S N + +L +L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKEL 205
Query: 366 DISHNQIKIL 375
+ NQ+K +
Sbjct: 206 ALDTNQLKSV 215
Score = 59.2 bits (144), Expect = 7e-10
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES--FANLKSLKILDVSY 554
LSS+Q+L L + G+L L++LN++HN + F+NL +L+ LD+S
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 555 NKLTMLPDG-FVMLSNLTTFYAQ 576
NK+ + +L +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLS 181
Score = 57.3 bits (139), Expect = 3e-09
Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 56/216 (25%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS +I +++ Q L++L+ L L+ N I + L++L L L+
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 300 LPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
L + + K LKEL+++HN +S F ++
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFK--------------------LPEYFSNLT----- 149
Query: 358 HFCKLVKLDISHNQIKILHK------PRCTHTLQTFSMNHNIGMKIPEW-FWYQEFLCLK 410
L LD+S N+I+ ++ + + ++ N I F + + LK
Sbjct: 150 ---NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLK 203
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISL 446
EL + + N ++ +G+F L SL
Sbjct: 204 ELALDT-------------NQLKSVPDGIFDRLTSL 226
Score = 53.8 bits (130), Expect = 4e-08
Identities = 53/302 (17%), Positives = 91/302 (30%), Gaps = 111/302 (36%)
Query: 285 TNLIVLDLSHNKLSELP--DFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSD 342
+ LDLS N L L F +F L+ LD+S ++
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--------------------- 66
Query: 343 ISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK--PRCTHTLQTFSMNHNIGMKIPEW 400
I ++S+ L L ++ N I+ L +LQ +
Sbjct: 67 IEDGAYQSLS--------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-- 116
Query: 401 FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460
N +L
Sbjct: 117 ------------------------------------NFPIGHL---------------KT 125
Query: 461 LKYLKNIKYLNCSNDIDHRKSQD-FVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDI- 518
LK L + N I K + F N L++++ L LS+ ++ I
Sbjct: 126 LKEL----NVA-HNLIQSFKLPEYFSN-----------LTNLEHLDLSSNKIQSIYCTDL 169
Query: 519 GNLICLE----KLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
L + L++S N + + +F ++ LK L + N+L +PDG F L++L
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQK 228
Query: 573 FY 574
+
Sbjct: 229 IW 230
Score = 50.0 bits (120), Expect = 8e-07
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 26/145 (17%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ ++ ++ L L L+++HN Q LTNL LDLS NK+
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKI 161
Query: 298 SELP--DFLNFKVLK----ELDISHNNFESMP------LCLQVHFYVHIPYKHSQSDISH 345
+ D + LD+S N + + L+ + +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK------------ELALDT 209
Query: 346 NNFESMPLCLQVHFCKLVKLDISHN 370
N +S+P + L K+ + N
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTN 234
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 61.9 bits (151), Expect = 3e-11
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 16/138 (11%)
Query: 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYL 498
N+ L + N A +N + + L N++ L D+ K + L
Sbjct: 65 AHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSG-----------L 111
Query: 499 SSIQELHLSNVQL-NCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
+S+ L +S+ + I I L + +++S+N L LK L++ ++ +
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171
Query: 558 TMLPDGFVMLSNLTTFYA 575
G L YA
Sbjct: 172 HDY-RGIEDFPKLNQLYA 188
Score = 54.6 bits (132), Expect = 1e-08
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNH-QDINFVQESMSQKLTNLIVLDLSHNK 296
+++SH + + L + +DLS+N DI ++ L L L++ +
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK-----TLPELKSLNIQFDG 170
Query: 297 LSELPDFLNFKVLKELDISHNNFES 321
+ + +F L +L
Sbjct: 171 VHDYRGIEDFPKLNQLYAFSQTIGG 195
Score = 52.3 bits (126), Expect = 6e-08
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 18/120 (15%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDIS 315
++ +LT + L++ N D+ ++ N+ L +++ + L+ L I
Sbjct: 42 QMNSLTYITLANINVTDLTGIE-----YAHNIKDLTINNIHATNYNPISGLSNLERLRIM 96
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQS----DISHNNFESMPLCLQVHFCKLVKLDISHNQ 371
+ S + S DISH+ + L K+ +D+S+N
Sbjct: 97 GKDVTSDKIP---------NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
Score = 51.5 bits (124), Expect = 1e-07
Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS--ELPDFLNFKVLKEL 312
+ N+ L +++ + + N + L+NL L + ++ ++P+ L L
Sbjct: 63 EYAHNIKDLTINNIHATNYNPI-----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117
Query: 313 DISHNNFESMPLCLQVHF----YVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDIS 368
DISH+ + L + + Y + +DI +++P +L L+I
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLP--------ELKSLNIQ 167
Query: 369 HNQIK 373
+ +
Sbjct: 168 FDGVH 172
Score = 49.6 bits (119), Expect = 5e-07
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 13/119 (10%)
Query: 441 SNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLS 499
SNL L + + L L ++ L+ S + D L
Sbjct: 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-----------LP 136
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
+ + LS + L L+ LNI + V+ + L L +
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIG 194
Score = 49.2 bits (118), Expect = 7e-07
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 35/136 (25%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN-K 296
+ + +D+ + LT+LT+LD+SH+ H D + L + +DLS+N
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL---TKINTLPKVNSIDLSYNGA 148
Query: 297 LSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
++++ LK L+I + D E P
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGV---------------------HDYR--GIEDFP---- 181
Query: 357 VHFCKLVKLDISHNQI 372
KL +L I
Sbjct: 182 ----KLNQLYAFSQTI 193
Score = 38.0 bits (89), Expect = 0.003
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSEL 300
L L L++ + D ++ L L +
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE-----DFPKLNQLYAFSQTIGGK 196
Score = 36.1 bits (84), Expect = 0.018
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 518 IGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+ L + +++ V L ++K L ++ T + LSNL
Sbjct: 40 EAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLR 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 63.7 bits (155), Expect = 4e-11
Identities = 55/278 (19%), Positives = 98/278 (35%), Gaps = 67/278 (24%)
Query: 229 CNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLI 288
C ++ S Q + V +S+ + +LDLSHNN + E +LTNL
Sbjct: 18 CASN-----ILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLR--AEWTPTRLTNLH 67
Query: 289 VLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
L LSHN L+ + F+ L+ LD+S N+ ++
Sbjct: 68 SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD---------------------EF 106
Query: 347 NFESMPLCLQVHFCKLVKLDISHNQIKILHK---PRCTHTLQTFSMNHNIGMKIPEW-FW 402
F + L L + +N I ++ + LQ ++ N + P
Sbjct: 107 LFSDLQ--------ALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQISRFPVELIK 157
Query: 403 YQEFL-CLKELNMSS------TDPFFEHLPIWLLNHMELKEN---------GVFSNLISL 446
L L L++SS + LP W+ N + L N +FS+
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR 217
Query: 447 HMQNTAAVMSNV-----SQLKYLKNIKYLNCSNDIDHR 479
+ + ++ +L + ++ + NCS +
Sbjct: 218 QLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESA 255
Score = 60.6 bits (147), Expect = 4e-10
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
+ +++ L LS+ L+ + E + +L LE L + +N + + +F ++ L+ L +S N
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 556 KLTMLPDG-FVMLSNLT 571
+++ P + L
Sbjct: 147 QISRFPVELIKDGNKLP 163
Score = 57.5 bits (139), Expect = 5e-09
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 499 SSIQELHLSNVQLNCIPEDI--GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
S L LS+ L+ + + L L L +SHN + + +F + +L+ LD+S N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
L L + F L L
Sbjct: 99 HLHTLDEFLFSDLQALEVLL 118
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 61.7 bits (150), Expect = 1e-10
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 486 NVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL 544
N+L+ L+ L + + +L+L +L + D G L L L++SHN++ LP L
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 545 KSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+L +LDVS+N+LT LP G L L Y
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Score = 58.6 bits (142), Expect = 1e-09
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 429 LNHMELKENGVFSNLISL--------HMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK 480
L+ EL + V L L +Q+ + + L L ++
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL----DVSF-------- 109
Query: 481 SQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLP 538
N L LPL L L +QEL+L +L +P + LEKL++++N + +LP
Sbjct: 110 -----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 539 ES-FANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L++L L + N L +P GF L +
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201
Score = 56.3 bits (136), Expect = 8e-09
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHN 317
+ T+L LS N + + T L L+L +L++L VL LD+SHN
Sbjct: 31 KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87
Query: 318 NFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
+S+PL Q +P + D+S N S+PL +L +L + N++K L
Sbjct: 88 QLQSLPLLGQ-----TLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Score = 51.6 bits (124), Expect = 3e-07
Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 19/174 (10%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMEL 221
L ++ D+ LH+ N + ++ + T +L + + TK+ L
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKL-QVDGTLPVL 79
Query: 222 IDTELNCCNKQYHDIFTV----------NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQ 271
L+ + Q + + ++S + + + L L L L N +
Sbjct: 80 --GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 272 DINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMP 323
+ + L L L++N L+ELP + L L + N+ ++P
Sbjct: 138 TL---PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 47.0 bits (112), Expect = 7e-06
Identities = 48/277 (17%), Positives = 83/277 (29%), Gaps = 79/277 (28%)
Query: 281 SQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQ 340
K+ + + ++ L+ LP L K L +S N +
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYT------------------- 45
Query: 341 SDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEW 400
S +L +L++ ++ L L T ++HN +P
Sbjct: 46 --FSLATLMPYT--------RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL 95
Query: 401 FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460
Q L L++S N + G L +
Sbjct: 96 G--QTLPALTVLDVSF-------------NRLTSLPLGALRGL---------------GE 125
Query: 461 LKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI- 518
L+ L YL N L LP +L +++L L+N L +P +
Sbjct: 126 LQEL----YLKG-------------NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
Query: 519 GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYN 555
L L+ L + N +Y +P+ F L + N
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 45.1 bits (107), Expect = 3e-05
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD-FLNFKVLKELDI 314
L L L++NN + + + L NL L L N L +P F +L +
Sbjct: 146 PTPKLEKLSLANNN---LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 315 SHN 317
N
Sbjct: 203 HGN 205
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 58.8 bits (143), Expect = 3e-10
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKL 557
+ EL+L Q +P+++ N L +++S+N++ L SF+N+ L L +SYN+L
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 558 TMLPDG-FVMLSNLTTFY 574
+P F L +L
Sbjct: 91 RCIPPRTFDGLKSLRLLS 108
Score = 52.7 bits (127), Expect = 4e-08
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 486 NVLWELPLSILYLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFAN 543
N +P + + + LSN +++ + N+ L L +S+N++ +P +F
Sbjct: 41 NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100
Query: 544 LKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
LKSL++L + N ++++P+G F LS L+
Sbjct: 101 LKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132
Score = 46.9 bits (112), Expect = 3e-06
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 514 IPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTT 572
IP D+ +L + N+ +P+ +N K L ++D+S N+++ L + F ++ L T
Sbjct: 29 IPRDV------TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82
Query: 573 FY 574
Sbjct: 83 LI 84
Score = 44.2 bits (105), Expect = 3e-05
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
+LT++DLS+N I+ + +T L+ L LS+N+L +P F K L+ L
Sbjct: 51 SNYKHLTLIDLSNN---RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
Query: 313 DISHNNFESMP 323
+ N+ +P
Sbjct: 108 SLHGNDISVVP 118
Score = 40.4 bits (95), Expect = 6e-04
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
+T L L LS+N + I L +L +L L N +S +P+ F + L L
Sbjct: 76 NMTQLLTLILSYNRLRCI---PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132
Query: 314 ISHN 317
I N
Sbjct: 133 IGAN 136
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 60.0 bits (146), Expect = 4e-10
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNL 521
LKN++ L ++ N L LP+ + L ++ EL L QL +P + +L
Sbjct: 84 LKNLETLWVTD-----------NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 522 ICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L L++ +N++ LP+ F L SLK L + N+L +P+G F L+ L T
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187
Score = 59.2 bits (144), Expect = 7e-10
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 438 GVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY 497
+ ++ L +Q+ L ++ L ++ N L LP I
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-----------NKLQTLPAGIFK 82
Query: 498 -LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSY 554
L +++ L +++ +L +P + L+ L +L + N++ LP F +L L L + Y
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 555 NKLTMLPDG-FVMLSNLTTFY 574
N+L LP G F L++L
Sbjct: 143 NELQSLPKGVFDKLTSLKELR 163
Score = 53.4 bits (129), Expect = 5e-08
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 438 GVF---SNLISLHMQNT--AAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELP 492
G+F NL +L + + A+ V L N+ L N L LP
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGV--FDQLVNLAELRLDR-----------NQLKSLP 125
Query: 493 LSILY-LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKI 549
+ L+ + L L +L +P+ + L L++L + +N++ ++PE F L LK
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 550 LDVSYNKLTMLPDG-FVMLSNLTTFY 574
L + N+L +P+G F L L
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Score = 51.1 bits (123), Expect = 3e-07
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 224 TELNCCNKQY----HDIFT-------VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQD 272
L + + +F + L + + + LT LT L L +N Q
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 273 INFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMP 323
+ + + KLT+L L L +N+L +P+ F LK L + +N + +P
Sbjct: 148 L---PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Score = 49.2 bits (118), Expect = 1e-06
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
+LT L +L L+ N Q + + ++L NL L ++ NKL LP F L EL
Sbjct: 58 HRLTKLRLLYLNDNKLQTL---PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 313 DISHNNFESMP 323
+ N +S+P
Sbjct: 115 RLDRNQLKSLP 125
Score = 45.0 bits (107), Expect = 3e-05
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
+ LDL N + +LT L +L L+ NKL LP F K L+ L ++
Sbjct: 37 ADTKKLDLQSNKLSSL---PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N +++P+ + ++ + N +S+P + KL L + +N+++ L
Sbjct: 94 DNKLQALPIGVFDQ-----LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Score = 44.2 bits (105), Expect = 5e-05
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
KLT+L L L +N + V E KLT L L L +N+L +P+ F + + LK L
Sbjct: 155 KLTSLKELRLYNNQ---LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 314 ISHN 317
+ N
Sbjct: 212 LQEN 215
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 58.9 bits (143), Expect = 7e-10
Identities = 21/169 (12%), Positives = 56/169 (33%), Gaps = 24/169 (14%)
Query: 223 DTELNCCNKQYHDI-------FTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINF 275
+ + K I T+ L + + L N++ + +S + +
Sbjct: 13 EEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT--LQQ 70
Query: 276 VQESMSQKLTNLIVLDLSHNK-LSELPD--FLNFKVLKELDISHNNFESMPLC-----LQ 327
++ L+ + +++ + + L+ + +LK L I + + P
Sbjct: 71 LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130
Query: 328 VHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
+ F + I + I N F+ + + + L + +N +
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCN-------ETLTLKLYNNGFTSVQ 172
Score = 48.8 bits (117), Expect = 1e-06
Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 56/234 (23%)
Query: 362 LVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF- 420
L + ++ + FS N + + +S
Sbjct: 33 TQTLKLIETHLRTIPS-------HAFSNLPN----------------ISRIYVSIDVTLQ 69
Query: 421 ------FEHLP----IWLLNHMELK--ENGVFSNLISL---HMQNTA-AVMSNVSQLKYL 464
F +L I + N L + L L + NT + +++++
Sbjct: 70 QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129
Query: 465 KNIKYLNCS--NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
L + + F + E L L N + N
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNET----------LTLKLYNNGFTSVQGYAFNGT 179
Query: 523 CLEKLNISHNKVYKL--PESFANLKS-LKILDVSYNKLTMLP-DGFVMLSNLTT 572
L+ + ++ NK + ++F + S +LDVS +T LP G L L
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233
Score = 47.7 bits (114), Expect = 3e-06
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 498 LSSIQELHLS-NVQLNCIPEDI-GNLICLEKLNISHNKVYKL--PESFANLKSLKILDVS 553
L +I +++S +V L + NL + + I + + P++ L LK L +
Sbjct: 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113
Query: 554 YNKLTMLPDG--FVMLSNLTTFY 574
L M PD
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILE 136
Score = 41.5 bits (98), Expect = 3e-04
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 498 LSSIQELHLSNVQLNCIPED--IGNLICLEKLNISHN-KVYKLPE-SFANLKS-LKILDV 552
L ++ L + N L P+ + + L I+ N + +P +F L + L +
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163
Query: 553 SYNKLTMLPDGFVMLSNLTTFY 574
N T + + L Y
Sbjct: 164 YNNGFTSVQGYAFNGTKLDAVY 185
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 58.6 bits (141), Expect = 2e-09
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 488 LWELPLSILYLSSIQELHLS-NVQLNCIP-EDIGNLICLEKLNISHNKVYKL-PESFANL 544
+ + ++ EL++ L + D+ L L L I + + + P++F
Sbjct: 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79
Query: 545 KSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
L L++S+N L L V +L
Sbjct: 80 PRLSRLNLSFNALESLSWKTVQGLSLQELV 109
Score = 49.0 bits (116), Expect = 2e-06
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 15/109 (13%)
Query: 223 DTELNCCNKQYHDIF----------TVNLSHQ-DINFVQESMSQKLTNLTVLDLSHNNHQ 271
+ L C D + + +Q + ++ + L L L + +
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-- 67
Query: 272 DINFVQESMSQKLTNLIVLDLSHNKLSELP-DFLNFKVLKELDISHNNF 319
+ FV L L+LS N L L + L+EL +S N
Sbjct: 68 -LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Score = 48.2 bits (114), Expect = 4e-06
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 455 MSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNC 513
+ ++ L +N+ L N L L L L L ++ L + L
Sbjct: 21 LDSLHHLPGAENLTELYIENQ----------QHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 514 IPEDI-GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
+ D L +LN+S N + L SL+ L +S N L
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 32.8 bits (74), Expect = 0.27
Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 30/105 (28%)
Query: 297 LSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
L L + L EL I + H+ + + +
Sbjct: 21 LDSLHHLPGAENLTELYIENQQ--------------HL------QHLELRDLRGLG---- 56
Query: 357 VHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPE 399
+L L I + ++ + T L +++ N +
Sbjct: 57 ----ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97
Score = 30.1 bits (67), Expect = 2.1
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 20/105 (19%)
Query: 409 LKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIK 468
L EL + + +HL + L + L +L + + + +
Sbjct: 33 LTELYIEN-QQHLQHLELRDLRGL--------GELRNLTIVKSGLRFVAPDAFHFTPRLS 83
Query: 469 YLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNC 513
LN S N L L + S+QEL LS L+C
Sbjct: 84 RLNLSF-----------NALESLSWKTVQGLSLQELVLSGNPLHC 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 57.3 bits (139), Expect = 3e-09
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 25/143 (17%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
++L+ + + ++N Q + +Q TNL L LSHN++S+L + L+EL +
Sbjct: 38 KELSGVQNFNGDNSNIQSLAGMQ-----FFTNLKELHLSHNQISDLSPLKDLTKLEELSV 92
Query: 315 SHNNFESMP----LCLQVHFYVHIPYKHSQSDISHNNFESM-PLCLQVHFCKLVKLDISH 369
+ N +++ CL + + +N L H L L I +
Sbjct: 93 NRNRLKNLNGIPSACLS------------RLFLDNNELRDTDSLI---HLKNLEILSIRN 137
Query: 370 NQIKILHKPRCTHTLQTFSMNHN 392
N++K + L+ ++ N
Sbjct: 138 NKLKSIVMLGFLSKLEVLDLHGN 160
Score = 55.8 bits (135), Expect = 9e-09
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
L NL +L + +N + I + L+ L VLDL N+++ K + +D+
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLG-----FLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179
Query: 315 SHNNFESMPLCLQVHFYVHIPYK 337
+ + P+ Q Y+ K
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVK 202
Score = 55.8 bits (135), Expect = 1e-08
Identities = 46/312 (14%), Positives = 98/312 (31%), Gaps = 81/312 (25%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
L N +L + D+ +E L+ + + ++ + L F LKEL +
Sbjct: 16 PGLANAVKQNLGKQSVTDLVSQKE-----LSGVQNFNGDNSNIQSLAGMQFFTNLKELHL 70
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKI 374
SHN SD+S + + KL +L ++ N++K
Sbjct: 71 SHNQI---------------------SDLS--PLKDLT--------KLEELSVNRNRLKN 99
Query: 375 LHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMEL 434
L + L +++N + TD HL
Sbjct: 100 L-NGIPSACLSRLFLDNN--------------------ELRDTDS-LIHLK--------- 128
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPL 493
NL L ++N + ++ L +L ++ L+ N+I + + + + L
Sbjct: 129 -------NLEILSIRNNK--LKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179
Query: 494 SILYLSSIQELHLSNVQ-LNCIPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILD 551
+ + + + N + + G I IS+ Y + +
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRWI--SPYYISNGGSYVDGCVLWELPVYTDEVS 237
Query: 552 VSYNKLTMLPDG 563
+++ + +
Sbjct: 238 YKFSEYINVGET 249
Score = 54.3 bits (131), Expect = 2e-08
Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 32/149 (21%)
Query: 456 SNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLS---------ILYLSSIQELH 505
+ V L N N + SQ ++ + + + ++++ELH
Sbjct: 10 NQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELH 69
Query: 506 LSNVQLNCIPEDIGNLICLEKLNISHNKVYKLP--------------------ESFANLK 545
LS+ Q++ + + +L LE+L+++ N++ L +S +LK
Sbjct: 70 LSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLK 128
Query: 546 SLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+L+IL + NKL + LS L
Sbjct: 129 NLEILSIRNNKLKSI-VMLGFLSKLEVLD 156
Score = 50.8 bits (122), Expect = 4e-07
Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 42/215 (19%)
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTD-- 418
VK ++ + L + +Q F+ +++ + Q F LKEL++S
Sbjct: 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGM---QFFTNLKELHLSHNQIS 76
Query: 419 --PFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDI 476
+ L L L + + N++ + + L N
Sbjct: 77 DLSPLKDLT----------------KLEELSVNRNR--LKNLNGIP-SACLSRLFLDN-- 115
Query: 477 DHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYK 536
N L + S+++L +++ L + N +L I +G L LE L++ N++
Sbjct: 116 ---------NELRDTD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN 164
Query: 537 LPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
LK + +D++ K P + L
Sbjct: 165 T-GGLTRLKKVNWIDLTGQKCVNEPVKY--QPELY 196
Score = 46.9 bits (112), Expect = 8e-06
Identities = 31/264 (11%), Positives = 86/264 (32%), Gaps = 64/264 (24%)
Query: 292 LSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESM 351
++++ + ++ + +D+ + + +
Sbjct: 4 QRPTPINQVFPDPGLANAVKQNLGKQSV---------------------TDLV--SQKEL 40
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKE 411
+ + ++ I+ L + L+ ++HN +I + ++ L+E
Sbjct: 41 S--------GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN---QISDLSPLKDLTKLEE 89
Query: 412 LNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN 471
L+++ N ++ + L L + N + + L +LKN++ L+
Sbjct: 90 LSVNR-------------NRLKNLNGIPSACLSRLFLDNNE--LRDTDSLIHLKNLEILS 134
Query: 472 CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISH 531
N N L + + +LS ++ L L ++ + L + ++++
Sbjct: 135 IRN-----------NKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTG 181
Query: 532 NKVYKLPESFANLKSLKILDVSYN 555
K P L I + +
Sbjct: 182 QKCVNEPVK--YQPELYITNTVKD 203
Score = 39.6 bits (93), Expect = 0.002
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 503 ELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD 562
E +N + L K N+ V L S L ++ + + + L
Sbjct: 1 ESIQRPTPINQV-FPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSL-A 57
Query: 563 GFVMLSNLTTFY 574
G +NL +
Sbjct: 58 GMQFFTNLKELH 69
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 55.4 bits (134), Expect = 3e-09
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 35/137 (25%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
V L+ + I Q + LDL I E++ L +D S N++
Sbjct: 2 VKLTAELIE--QAAQYTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIR 55
Query: 299 ELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVH 358
+L F + LK L +++N I +++P
Sbjct: 56 KLDGFPLLRRLKTLLVNNNRICR---------------------IGEGLDQALP------ 88
Query: 359 FCKLVKLDISHNQIKIL 375
L +L +++N + L
Sbjct: 89 --DLTELILTNNSLVEL 103
Score = 44.3 bits (105), Expect = 2e-05
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
+EL L ++ I L + ++ S N++ KL + F L+ LK L V+ N++
Sbjct: 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI 76
Query: 558 TMLPDGFV-MLSNLTTFY 574
+ +G L +LT
Sbjct: 77 CRIGEGLDQALPDLTELI 94
Score = 43.9 bits (104), Expect = 3e-05
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
T+ +++ I + E + Q L +LT L L++N+ ++ + L +L L + N +
Sbjct: 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTYLCILRNPV 125
Query: 298 SELPD-----FLNFKVLKELD 313
+ ++ LD
Sbjct: 126 TNKKHYRLYVIYKVPQVRVLD 146
Score = 38.9 bits (91), Expect = 0.002
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 497 YLSSIQELHLSNVQLNCIPEDIG-NLICLEKLNISHNKVYKLPE--SFANLKSLKILDVS 553
L ++ L ++N ++ I E + L L +L +++N + +L + A+LKSL L +
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
Query: 554 YNKLTMLPD 562
N +T
Sbjct: 122 RNPVTNKKH 130
Score = 36.2 bits (84), Expect = 0.012
Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 18/127 (14%)
Query: 289 VLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP-LCLQVHFYVHIPYKHSQSDISHNN 347
++ L+ + + + N +ELD+ + L + + I D S N
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAI-------DFSDNE 53
Query: 348 FESMPLCLQVHFCKLVKLDISHNQIKIL--HKPRCTHTLQTFSMNHNIGMKIPEWFWYQE 405
+ +L L +++N+I + + L + +N + E +
Sbjct: 54 IRKLD-GFP-LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN---SLVEL---GD 105
Query: 406 FLCLKEL 412
L L
Sbjct: 106 LDPLASL 112
Score = 35.4 bits (82), Expect = 0.025
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 520 NLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
N + +L++ K+ + A L +D S N++ L DGF +L L T
Sbjct: 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLL 70
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 56.2 bits (136), Expect = 4e-09
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDI-GNL 521
K ++ ++ SN N + EL L S+ L L ++ +P+ + L
Sbjct: 55 YKKLRRIDLSN-----------NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103
Query: 522 ICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L+ L ++ NK+ L +F +L +L +L + NKL + G F L + T +
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158
Score = 55.0 bits (133), Expect = 1e-08
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+LS+ I+ + Q L +L L L N I + +S+ + L +L +L L+ NK++
Sbjct: 62 DLSNNQISELAPDAFQGLRSLNSLVLYGNK---ITELPKSLFEGLFSLQLLLLNANKINC 118
Query: 300 LPD--FLNFKVLKELDISHNNFESMP 323
L F + L L + N +++
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIA 144
Score = 50.8 bits (122), Expect = 2e-07
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNK 556
+I E+ L + IP L ++++S+N++ +L +F L+SL L + NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 557 LTMLPDG-FVMLSNLTTFY 574
+T LP F L +L
Sbjct: 92 ITELPKSLFEGLFSLQLLL 110
Score = 50.8 bits (122), Expect = 2e-07
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
L +DLS+N I+ + Q L +L L L NK++ELP F L+ L
Sbjct: 53 SPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109
Query: 313 DISHNNFESMP 323
++ N +
Sbjct: 110 LLNANKINCLR 120
Score = 45.0 bits (107), Expect = 2e-05
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 514 IPEDIGNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLT 571
+PE I ++ + N + +P +F+ K L+ +D+S N+++ L F L +L
Sbjct: 30 LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 572 TFY 574
+
Sbjct: 84 SLV 86
Score = 43.5 bits (103), Expect = 6e-05
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L I + +S+ + L +L +L L+ N IN ++ Q L NL +L L NKL
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANK---INCLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 300 LPD--FLNFKVLKELDISHNNFE 320
+ F + ++ + ++ N F
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPFI 165
Score = 34.6 bits (80), Expect = 0.049
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 27/128 (21%)
Query: 285 TNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMP-------LCLQVHFYVHIP 335
+ + L N + +P F +K L+ +D+S+N + L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN-------- 83
Query: 336 YKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCT----HTLQTFSMNH 391
+ N +P L L L ++ N+I L H L S+
Sbjct: 84 ----SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL--RVDAFQDLHNLNLLSLYD 137
Query: 392 NIGMKIPE 399
N I +
Sbjct: 138 NKLQTIAK 145
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 57.3 bits (139), Expect = 6e-09
Identities = 55/350 (15%), Positives = 98/350 (28%), Gaps = 104/350 (29%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFLNF-KVLKE 311
++ LD+ D + + L V+ L L+E + L L E
Sbjct: 3 LDIQSLDIQCEELSDARW--AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60
Query: 312 LDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQ 371
L++ N + + LQ CK+ KL + +
Sbjct: 61 LNLRSNE------------------------LGDVGVHCVLQGLQTPSCKIQKLSLQNCC 96
Query: 372 IKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS---TDPFFEHL---- 424
+ C T L+EL++S D + L
Sbjct: 97 LTGAG---CGVLSSTLRTLPT----------------LQELHLSDNLLGDAGLQLLCEGL 137
Query: 425 --PIWLLNHMELKENGV--------------FSNLISLHMQNT----AAVMSNVSQLKYL 464
P L ++L+ + + L + N A V LK
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197
Query: 465 K-NIKYLN-CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLI 522
++ L S + +D ++ +S++EL L + N + + +
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIV-------ASKASLRELALGS---NKLGDVGMAEL 247
Query: 523 C---------LEKLNISHNK-----VYKLPESFANLKSLKILDVSYNKLT 558
C L L I L +SLK L ++ N+L
Sbjct: 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297
Score = 56.5 bits (137), Expect = 1e-08
Identities = 68/368 (18%), Positives = 112/368 (30%), Gaps = 106/368 (28%)
Query: 252 SMSQKLTNLTVLDLSHNNHQDINFVQ--ESMSQKLTNLIVLDLSHNKLSE-----LPDFL 304
S + L L L LS N D E + L L L + LS L L
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166
Query: 305 -NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLV 363
KEL +S+N+ I+ + L+ C+L
Sbjct: 167 RAKPDFKELTVSNND------------------------INEAGVRVLCQGLKDSPCQLE 202
Query: 364 KLDISHNQIKILHKPRCTHTL-QTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFE 422
L + + L + + L+EL + S
Sbjct: 203 ALKLESCGV----TSDNCRDLCGIVASKAS----------------LRELALGSNKLGDV 242
Query: 423 HLPIWLLNHMELKENGVFSNLISLHMQN---TAAVMSNVSQ-LKYLKNIKYLN-CSNDID 477
+ L L + S L +L + TA ++ + L+ +++K L+ N++
Sbjct: 243 G--MAELCPGLLHPS---SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297
Query: 478 HRKSQDFVNVLWE--LPLSILYLS--------------------SIQELHLSNVQLNCIP 515
++ L E L L++ + EL +SN N +
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN---NRL- 353
Query: 516 EDIG-NLIC---------LEKLNISHNKV-----YKLPESFANLKSLKILDVSYNKLTML 560
ED G +C L L ++ V L + SL+ LD+S N L
Sbjct: 354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG-- 411
Query: 561 PDGFVMLS 568
G + L
Sbjct: 412 DAGILQLV 419
Score = 41.5 bits (98), Expect = 6e-04
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 36/131 (27%)
Query: 252 SMSQKLTNLTVLDLSHNNHQD--INFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFL 304
S+ + L L +S+N +D + + + + Q + L VL L+ +S+ L L
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394
Query: 305 -NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC--LQVHFCK 361
L+ELD+S+N + + L ++ C
Sbjct: 395 LANHSLRELDLSNNCLG--------------------------DAGILQLVESVRQPGCL 428
Query: 362 LVKLDISHNQI 372
L +L +
Sbjct: 429 LEQLVLYDIYW 439
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 54.7 bits (132), Expect = 9e-09
Identities = 34/174 (19%), Positives = 57/174 (32%), Gaps = 38/174 (21%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
I +E S T ++L H I + ++S L L LS N + +
Sbjct: 5 TTIKDAIRIFEERKSVVATEAEKVEL-HGMIPPIEKMDATLST-LKACKHLALSTNNIEK 62
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
+ + L+ L + N + + N +++
Sbjct: 63 ISSLSGMENLRILSLGRNLIKKI-----------------------ENLDAVA------- 92
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELN 413
L +L IS+NQI L L+ M++N KI W E L L+
Sbjct: 93 DTLEELWISYNQIASLSGIEKLVNLRVLYMSNN---KITNW---GEIDKLAALD 140
Score = 50.5 bits (121), Expect = 3e-07
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 486 NVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLK 545
+ ++ ++ L + + L LS + I + + L L++ N + K+ A
Sbjct: 35 PPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVAD 93
Query: 546 SLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
+L+ L +SYN++ L G L NL Y
Sbjct: 94 TLEELWISYNQIASL-SGIEKLVNLRVLY 121
Score = 47.4 bits (113), Expect = 2e-06
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 503 ELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPD 562
ELH + + + L + L +S N + K+ S + +++L+IL + N + + +
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN 87
Query: 563 GFVMLSNLTTFY 574
+ L +
Sbjct: 88 LDAVADTLEELW 99
Score = 45.8 bits (109), Expect = 8e-06
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
+ +++ L L + I LE+L IS+N++ L L +L++L +S NK+
Sbjct: 69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKI 127
Query: 558 TMLPD--GFVMLSNLTTFY 574
T + L L
Sbjct: 128 TNWGEIDKLAALDKLEDLL 146
Score = 45.1 bits (107), Expect = 1e-05
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+L I + E++ L L +S+N ++ ++ KL NL VL +S+NK++
Sbjct: 76 SLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSGIE-----KLVNLRVLYMSNNKITN 129
Query: 300 LPDFL---NFKVLKELDISHN 317
+ L++L ++ N
Sbjct: 130 WGEIDKLAALDKLEDLLLAGN 150
Score = 42.4 bits (100), Expect = 1e-04
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 456 SNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIP 515
+S L ++N++ L+ N++ ++ +++EL +S Q+ +
Sbjct: 61 EKISSLSGMENLRILSLGR-----------NLIKKIENLDAVADTLEELWISYNQIASL- 108
Query: 516 EDIGNLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLT 558
I L+ L L +S+NK+ E A L L+ L ++ N L
Sbjct: 109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153
Score = 32.3 bits (74), Expect = 0.29
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 526 KLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQR 577
+L+ + K+ + + LK+ K L +S N + + + NL R
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGR 79
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 55.0 bits (133), Expect = 1e-08
Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
N S+ I ++E + + + + L+ N +++ Q M + L +L L L N+++
Sbjct: 63 NFSNNKITDIEEGAFEGASGVNEILLTSNRLENV---QHKMFKGLESLKTLMLRSNRITC 119
Query: 300 LPD--FLNFKVLKELDISHNNFESMP 323
+ + F+ ++ L + N ++
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVA 145
Score = 54.7 bits (132), Expect = 1e-08
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 450 NTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSN 508
N V+ K L ++ +N SN N + ++ S + E+ L++
Sbjct: 42 NEFTVLEATGIFKKLPQLRKINFSN-----------NKITDIEEGAFEGASGVNEILLTS 90
Query: 509 VQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FV 565
+L + + L L+ L + N++ + SF L S+++L + N++T + G F
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 566 MLSNLTTFY 574
L +L+T
Sbjct: 151 TLHSLSTLN 159
Score = 53.9 bits (130), Expect = 2e-08
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 499 SSIQELHLSNVQLNCIPEDIG--NLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
EL L+N + + L L K+N S+NK+ + E +F + + ++ N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
+L + F L +L T
Sbjct: 92 RLENVQHKMFKGLESLKTLM 111
Score = 50.0 bits (120), Expect = 4e-07
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKEL 312
+KL L ++ S+N I ++E + + + + L+ N+L + F + LK L
Sbjct: 54 KKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110
Query: 313 DISHNNFESMP 323
+ N +
Sbjct: 111 MLRSNRITCVG 121
Score = 46.6 bits (111), Expect = 7e-06
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
L L++N + + +KL L ++ S+NK++++ + F + E+ ++
Sbjct: 32 QYTAELRLNNNEFTVLEA--TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89
Query: 316 HNNFESMP 323
N E++
Sbjct: 90 SNRLENVQ 97
Score = 45.4 bits (108), Expect = 1e-05
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
L+ + VQ M + L +L L L N I V L+++ +L L N+++
Sbjct: 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNR---ITCVGNDSFIGLSSVRLLSLYDNQITT 143
Query: 300 LPD--FLNFKVLKELDISHNNF 319
+ F L L++ N F
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPF 165
Score = 33.5 bits (77), Expect = 0.14
Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 64/175 (36%)
Query: 285 TNLIVLDLSHNKLSELPD---FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS 341
L L++N+ + L F L++++ S+N +
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE------------------ 73
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK---PRCTHTLQTFSMNHNIGMKIP 398
FE + ++ ++ N+++ + L+T + N
Sbjct: 74 ---EGAFEGAS--------GVNEILLTSNRLENVQHKMFKGLES-LKTLMLRSN------ 115
Query: 399 EWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKEN-------GVFSNLISL 446
+ + S F L + + L +N G F L SL
Sbjct: 116 ---------RITCVGNDS----FIGLS--SVRLLSLYDNQITTVAPGAFDTLHSL 155
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 52.8 bits (127), Expect = 9e-08
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNL 521
L + +LN N L L + L+ + L L+N QL +P + +L
Sbjct: 58 LTKLTWLNLDY-----------NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106
Query: 522 ICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L+KL + N++ LP F L LK L ++ N+L +P G F L+NL T
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Score = 46.6 bits (111), Expect = 7e-06
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNL 521
L + L +N N L LPL + +L+ + +L+L QL +P + L
Sbjct: 82 LTELGTLGLAN-----------NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Query: 522 ICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L++L ++ N++ +P F L +L+ L +S N+L +P G F L L T
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
Score = 45.1 bits (107), Expect = 3e-05
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
LT L L L N + + + +LT L L L+ N+L +P F L+ L
Sbjct: 104 DHLTQLDKLYLGGNQLKSL---PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160
Query: 313 DISHNNFESMP 323
+S N +S+P
Sbjct: 161 SLSTNQLQSVP 171
Score = 38.5 bits (90), Expect = 0.003
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 525 EKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYAQRK 578
EKL++ + L ++ F L L L++ YN+L L G F L+ L T
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93
Score = 35.1 bits (81), Expect = 0.042
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
+LT L L L+ N Q I KLTNL L LS N+L +P F L+ +
Sbjct: 129 RLTKLKELRLNTNQLQSI---PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
Query: 314 ISHNNF 319
+ N F
Sbjct: 186 LFGNQF 191
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 52.0 bits (125), Expect = 1e-07
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYN 555
L +++EL+L + QL +P + +L L L++ N++ LP + F L LK L + N
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 556 KLTMLPDGFVMLSNLTTFY 574
KLT LP G L++LT
Sbjct: 123 KLTELPRGIERLTHLTHLA 141
Score = 48.9 bits (117), Expect = 1e-06
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNL 521
L N+K L + N L LP+ + L+ + L L QL +P + L
Sbjct: 63 LINLKELYLGS-----------NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111
Query: 522 ICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+ L++L + NK+ +LP L L L + N+L +P G F LS+LT Y
Sbjct: 112 VHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165
Score = 41.2 bits (97), Expect = 4e-04
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD-FLNFKVLKELDI 314
LT LTVLDL N + + ++ +L +L L + NKL+ELP L L +
Sbjct: 86 SLTQLTVLDLGTNQ---LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142
Query: 315 SHNNFESMP 323
N +S+P
Sbjct: 143 DQNQLKSIP 151
Score = 39.7 bits (93), Expect = 0.001
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
L NL L L N + + LT L VLDL N+L+ LP F LKEL
Sbjct: 61 DSLINLKELYLGSNQLG---ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117
Query: 313 DISHNNFESMP 323
+ N +P
Sbjct: 118 FMCCNKLTELP 128
Score = 38.9 bits (91), Expect = 0.002
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 525 EKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
+ L + N++ KL F +L +LK L + N+L LP G F L+ LT
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94
Score = 35.4 bits (82), Expect = 0.030
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
+L +L L + N ++ E +LT+L L L N+L +P F L
Sbjct: 110 RLVHLKELFMCCNKLTELPRGIE----RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165
Query: 314 ISHN 317
+ N
Sbjct: 166 LFGN 169
Score = 34.3 bits (79), Expect = 0.067
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
TN +L L N + + + L NL L L N+L LP F + L LD+
Sbjct: 40 TNAQILYLHDNQITKL---EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 316 HNNFESMP 323
N +P
Sbjct: 97 TNQLTVLP 104
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 51.5 bits (124), Expect = 1e-07
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 499 SSIQELHLSNVQLNCIPED--IGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYN 555
EL L++ +L I D G L L KL + N++ + + F ++ L + N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
K+ + + F+ L L T
Sbjct: 89 KIKEISNKMFLGLHQLKTLN 108
Score = 46.9 bits (112), Expect = 3e-06
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
L + +L L QL I + +++L + NK+ ++ F L LK L++ N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
+++ + G F L++LT+
Sbjct: 113 QISCVMPGSFEHLNSLTSLN 132
Score = 44.2 bits (105), Expect = 3e-05
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
+L +L L+L N I + + + +++ L L NK+ E+ + FL LK L
Sbjct: 51 GRLPHLVKLELKRNQLTGI---EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107
Query: 313 DISHNNFESMP 323
++ N +
Sbjct: 108 NLYDNQISCVM 118
Score = 38.1 bits (89), Expect = 0.003
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
+++ L L N ++I+ M L L L+L N++S + F + L L+
Sbjct: 76 GASHIQELQLGENKIKEIS---NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 314 ISHN 317
++ N
Sbjct: 133 LASN 136
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 51.9 bits (125), Expect = 2e-07
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQLNCIPEDIGN-L 521
L N+ YL + N L LP + L++++EL L QL +P+ + + L
Sbjct: 84 LTNLTYLILTG-----------NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132
Query: 522 ICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L LN++HN++ LP+ F L +L LD+SYN+L LP+G F L+ L
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Score = 46.9 bits (112), Expect = 7e-06
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKL 557
L+SI ++ +N + + I L + L + NK++ + + L +L L ++ N+L
Sbjct: 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL 97
Query: 558 TMLPDG-FVMLSNLTTFYAQRK 578
LP+G F L+NL
Sbjct: 98 QSLPNGVFDKLTNLKELVLVEN 119
Score = 46.9 bits (112), Expect = 7e-06
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 429 LNHMELKENGVF---SNLISLHMQNT--AAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQD 483
L +L + +NL L + ++ + V L N+K L
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFD--KLTNLKELVLVE--------- 118
Query: 484 FVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES- 540
N L LP + L+++ L+L++ QL +P+ + L L +L++S+N++ LPE
Sbjct: 119 --NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 541 FANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
F L LK L + N+L +PDG F L++L +
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211
Score = 40.4 bits (95), Expect = 9e-04
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 25/199 (12%)
Query: 129 SGTQDTITNNSVEMDENTVKTEALSTRTFCDHELQSIED-DILVQLECLHIDNNKAQEYI 187
+ + SV + ++ + +++S++ L + L + NK +
Sbjct: 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS 79
Query: 188 VSMNVDRTPGFKLQNNDNDQNTKV-TNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDI 246
+ L N Q + D L EL Q +
Sbjct: 80 ALKELTNLTYLILTGN---QLQSLPNGVFDKLTNL--KELVLVENQ-------------L 121
Query: 247 NFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FL 304
+ + + KLTNLT L+L+HN Q + + + KLTNL LDLS+N+L LP+ F
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSL---PKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 305 NFKVLKELDISHNNFESMP 323
LK+L + N +S+P
Sbjct: 179 KLTQLKDLRLYQNQLKSVP 197
Score = 39.2 bits (92), Expect = 0.002
Identities = 24/138 (17%), Positives = 57/138 (41%), Gaps = 10/138 (7%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
T+ + + + +L ++ + ++++ + + +Q L N+ L L NKL
Sbjct: 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ-----YLPNVRYLALGGNKL 75
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
++ L L ++ N +S+P + + + N +S+P +
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLP-----NGVFDKLTNLKELVLVENQLQSLPDGVFD 130
Query: 358 HFCKLVKLDISHNQIKIL 375
L L+++HNQ++ L
Sbjct: 131 KLTNLTYLNLAHNQLQSL 148
Score = 35.8 bits (83), Expect = 0.029
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
KLTNLT LDLS+N Q + E + KLT L L L N+L +PD F L+ +
Sbjct: 155 KLTNLTELDLSYNQLQSL---PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211
Query: 314 ISHN 317
+ N
Sbjct: 212 LHDN 215
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 49.0 bits (117), Expect = 5e-07
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 13/120 (10%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDI 314
+ L VLD +N I E ++ + NL L L + L + + LK+L++
Sbjct: 24 AAVREL-VLDNCKSNDGKI----EGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLEL 78
Query: 315 SHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP--LCLQVHFCKLVKLDISHNQI 372
S N L + ++S N + + L+ L LD+ + ++
Sbjct: 79 SENRIFGGLDMLAEKL-----PNLTHLNLSGNKLKDISTLEPLK-KLECLKSLDLFNCEV 132
Score = 47.8 bits (114), Expect = 1e-06
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 251 ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFL--NFKV 308
E ++ + NL L L + ++ + KL L L+LS N++ D L
Sbjct: 42 EGLTAEFVNLEFLSLINVGLISVSNL-----PKLPKLKKLELSENRIFGGLDMLAEKLPN 96
Query: 309 LKELDISHNNFESM 322
L L++S N + +
Sbjct: 97 LTHLNLSGNKLKDI 110
Score = 46.7 bits (111), Expect = 3e-06
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 490 ELPLSILYLSSIQELHLSNVQLN--CIPEDIGNLICLEKLNISHNKVYKLPESFANLKSL 547
L L ++++EL L N + N I + LE L++ + + + + L L
Sbjct: 15 HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKL 73
Query: 548 KILDVSYNKLTMLPDGFV-MLSNLTTFY 574
K L++S N++ D L NLT
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLN 101
Score = 43.2 bits (102), Expect = 4e-05
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ LS I + +++KL NLT L+LS N +DI+ ++ +KL L LDL + ++
Sbjct: 75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLDLFNCEV 132
Query: 298 SELPD-----FLNFKVLKELD 313
+ L D F L LD
Sbjct: 133 TNLNDYRESVFKLLPQLTYLD 153
Score = 39.3 bits (92), Expect = 0.001
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 461 LKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIG 519
N+++L+ + V+ L +LP +++L LS ++ + +
Sbjct: 45 TAEFVNLEFLSLINVGLIS------VSNLPKLP-------KLKKLELSENRIFGGLDMLA 91
Query: 520 -NLICLEKLNISHNKVYKLPE--SFANLKSLKILDVSYNKLTMLPD 562
L L LN+S NK+ + L+ LK LD+ ++T L D
Sbjct: 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 36.3 bits (84), Expect = 0.010
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 20/119 (16%)
Query: 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVNVLWELPLSILYL 498
F NL L + N + +VS L L +K L S N I L + L
Sbjct: 48 FVNLEFLSLINVG--LISVSNLPKLPKLKKLELSENRIFG-----------GLDMLAEKL 94
Query: 499 SSIQELHLSNVQLNCIPE--DIGNLICLEKLNISHNKVYKLPE----SFANLKSLKILD 551
++ L+LS +L I + L CL+ L++ + +V L + F L L LD
Sbjct: 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
Score = 28.2 bits (63), Expect = 4.6
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
D +N + L F L L + + + + L+ ++ N +
Sbjct: 32 DNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDML 90
Query: 402 WYQEFLCLKELNMSS 416
++ L LN+S
Sbjct: 91 -AEKLPNLTHLNLSG 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 48.9 bits (117), Expect = 8e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGN-LICLEKLNISHNKVYKLPES-FANLKSLKILDVSYN 555
L+S+ +L+L +L +P + N L L LN+S N++ LP F L LK L ++ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
+L LPDG F L+ L
Sbjct: 111 QLQSLPDGVFDKLTQLKDLR 130
Score = 45.8 bits (109), Expect = 1e-05
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 464 LKNIKYLNCSNDIDHRKSQDFVNVLWELPLSIL-YLSSIQELHLSNVQLNCIPEDI-GNL 521
L ++ L N L LP + L+S+ L+LS QL +P + L
Sbjct: 51 LTSLTQLYLGG-----------NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 522 ICLEKLNISHNKVYKLPE-SFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L++L ++ N++ LP+ F L LK L + N+L +PDG F L++L +
Sbjct: 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154
Score = 42.4 bits (100), Expect = 1e-04
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNK 556
+ L L L +P + L L +L + NK+ LP F L SL L++S N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 557 LTMLPDG-FVMLSNLTTFY 574
L LP+G F L+ L
Sbjct: 88 LQSLPNGVFDKLTQLKELA 106
Score = 40.0 bits (94), Expect = 8e-04
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
KLT+LT L+LS N Q + + KLT L L L+ N+L LPD F LK+L
Sbjct: 74 KLTSLTYLNLSTNQLQSL---PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 314 ISHNNFESMP 323
+ N +S+P
Sbjct: 131 LYQNQLKSVP 140
Score = 39.7 bits (93), Expect = 0.001
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 223 DTELNCCNKQYH--------DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDIN 274
T + C ++ ++L + + + +LT+LT L L N Q
Sbjct: 9 GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ--- 65
Query: 275 FVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFESMP 323
+ + KLT+L L+LS N+L LP+ F LKEL ++ N +S+P
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116
Score = 36.6 bits (85), Expect = 0.011
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
KLT L L L+ N Q + + + KLT L L L N+L +PD F L+ +
Sbjct: 98 KLTQLKELALNTNQLQSL---PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154
Query: 314 ISHN 317
+ N
Sbjct: 155 LHDN 158
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 50.1 bits (120), Expect = 1e-06
Identities = 51/340 (15%), Positives = 106/340 (31%), Gaps = 81/340 (23%)
Query: 258 TNLTVLDLSHNNHQD--INFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFL--NFKV 308
+T LDLS NN + ++ + ++ L+LS N L L L
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES---MPLC--LQVHFCKLV 363
+ L++S N V IP+ + D+ N+F S +
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 364 KLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEH 423
L++ N + + + L + LN+
Sbjct: 142 SLNLRGNDL----GIKSSDELIQILAAIPAN--------------VNSLNLRG------- 176
Query: 424 LPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQD 483
N+ L L + S + + L L +N + + +
Sbjct: 177 ------NN--LASKNC----AEL----AKFLASIPASVTSL----DL-SANLLGLKSYAE 215
Query: 484 FVNVLWELPLSILYLSSIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNKVYK-- 536
+ +P + + L+L L+ + +L L+ + + ++ V
Sbjct: 216 LAYIFSSIP------NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269
Query: 537 ------LPESFANLKSLKILDVSYNKLTMLPDGFVMLSNL 570
L +F N++ + ++D + ++ P + +SNL
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEIH--PSHSIPISNL 307
Score = 37.4 bits (87), Expect = 0.010
Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 14/147 (9%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQD--INFVQESMSQKLTNLIVLDLSHNKL 297
LS++ + + ++++ +TVLDL N+ + +++ S ++ L+L N L
Sbjct: 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150
Query: 298 SE-----LPDFL--NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES 350
L L + L++ NN S F IP + D+S N
Sbjct: 151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210
Query: 351 ---MPLC--LQVHFCKLVKLDISHNQI 372
L +V L++ N +
Sbjct: 211 KSYAELAYIFSSIPNHVVSLNLCLNCL 237
Score = 30.4 bits (69), Expect = 1.8
Identities = 6/51 (11%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 252 SMSQKLTNLTVLDLSHNNHQDINFVQ----ESMSQKLTNLIVLDLSHNKLS 298
+ L +L + L ++ ++++ Q + + +I++D + ++
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 47.7 bits (114), Expect = 1e-06
Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 250 QESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVL 309
E ++ +++ L L ++ + E ++ + L L + L+ + + L
Sbjct: 9 LELRNRTPSDVKELVLDNSRSNEG--KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKL 66
Query: 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMP--LCLQVHFCKLVKLDI 367
K+L++S N L + ++S N + + L+ L LD+
Sbjct: 67 KKLELSDNRVSGGLEVLAEKC-----PNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDL 120
Query: 368 SHNQI 372
+ ++
Sbjct: 121 FNCEV 125
Score = 44.3 bits (105), Expect = 2e-05
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 490 ELPLSILYLSSIQELHLSNVQLNC--IPEDIGNLICLEKLNISHNKVYKLPESFANLKSL 547
L L S ++EL L N + N + LE L+ + + + + L L
Sbjct: 8 HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKL 66
Query: 548 KILDVSYNKLTMLPDGFV-MLSNLTTFY 574
K L++S N+++ + NLT
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLN 94
Score = 43.9 bits (104), Expect = 2e-05
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ LS ++ E +++K NLT L+LS N +D++ ++ +KL NL LDL + ++
Sbjct: 68 KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLFNCEV 125
Query: 298 SELPD-----FLNFKVLKELD 313
+ L D F L LD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146
Score = 42.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFA-NLKSLKILDVSYNK 556
++ L NV L I ++ L L+KL +S N+V E A +L L++S NK
Sbjct: 41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99
Query: 557 LTMLPD 562
+ L
Sbjct: 100 IKDLST 105
Score = 35.0 bits (81), Expect = 0.020
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 21/131 (16%)
Query: 429 LNHMELKENGV-FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS-NDIDHRKSQDFVN 486
N +L+ F L L N +++++ L L +K L S N +
Sbjct: 29 SNEGKLEGLTDEFEELEFLSTINVG--LTSIANLPKLNKLKKLELSDNRVSG-------- 78
Query: 487 VLWELPLSILYLSSIQELHLSNVQLNCIPE--DIGNLICLEKLNISHNKVYKLPE----S 540
L + ++ L+LS ++ + + L L+ L++ + +V L +
Sbjct: 79 ---GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135
Query: 541 FANLKSLKILD 551
F L L LD
Sbjct: 136 FKLLPQLTYLD 146
Score = 28.1 bits (63), Expect = 4.3
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
L F +L L + + + + L+ ++ N E ++ L LN+
Sbjct: 37 LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHLNL 95
Query: 415 SS 416
S
Sbjct: 96 SG 97
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 47.7 bits (113), Expect = 4e-06
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 14/158 (8%)
Query: 176 LHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCCN----- 230
I + + + + +N P L +Q ++ M + L+
Sbjct: 82 YKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP 141
Query: 231 -KQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIV 289
+I V + + + + L L+LS+N ++ + S+ QK NL +
Sbjct: 142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDM-SSIVQKAPNLKI 200
Query: 290 LDLSHNKLSELPDF--LNFKVLKELDISHNNFESMPLC 325
L+LS N+L + + L+EL + N LC
Sbjct: 201 LNLSGNELKSERELDKIKGLKLEELWLDGN-----SLC 233
Score = 31.5 bits (71), Expect = 0.59
Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 19/132 (14%)
Query: 431 HMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWE 490
+ + + +++ + + +Y + + L+ +
Sbjct: 93 SIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKG---------LRSDPDL 143
Query: 491 LPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANL----KS 546
+ +I + L I E+I L LN+S+N++Y+L + +++ +
Sbjct: 144 VAQNID--VVLNRRSCMAATLRIIEENIPEL---LSLNLSNNRLYRL-DDMSSIVQKAPN 197
Query: 547 LKILDVSYNKLT 558
LKIL++S N+L
Sbjct: 198 LKILNLSGNELK 209
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 44.9 bits (107), Expect = 1e-05
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 498 LSSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYN 555
L+ + +L LS Q+ +P+ + L L L + NK+ LP F L LK L + N
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 556 KLTMLPDG-FVMLSNLTTFY 574
+L +PDG F L++L +
Sbjct: 111 QLKSVPDGIFDRLTSLQKIW 130
Score = 44.9 bits (107), Expect = 1e-05
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 502 QELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTM 559
L L + +L +P + L L KL++S N++ LP+ F L L IL + NKL
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 560 LPDG-FVMLSNLTTFY 574
LP+G F L+ L
Sbjct: 91 LPNGVFDKLTQLKELA 106
Score = 41.9 bits (99), Expect = 2e-04
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKEL 312
KLT LT L LS N Q + + + KLT L +L L NKL LP+ F LKEL
Sbjct: 49 DKLTQLTKLSLSQNQIQSL---PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105
Query: 313 DISHNNFESMP 323
+ N +S+P
Sbjct: 106 ALDTNQLKSVP 116
Score = 35.7 bits (83), Expect = 0.017
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
KLT LT+L L N Q + + KLT L L L N+L +PD F L+++
Sbjct: 74 KLTKLTILYLHENKLQSL---PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130
Query: 314 ISHN 317
+ N
Sbjct: 131 LHTN 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 43.4 bits (103), Expect = 4e-05
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNK 556
+ Q L L+N Q+ + + +L+ L++L + NK+ +P F L L LD++ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 557 LTMLPDG-FVMLSNLTTFY 574
L +P G F L +LT Y
Sbjct: 93 LKSIPRGAFDNLKSLTHIY 111
Score = 39.9 bits (94), Expect = 6e-04
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLT 558
++ N++L +P I ++L +++N++ KL F +L +L+ L + NKLT
Sbjct: 13 DQTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT 70
Query: 559 MLPDG-FVMLSNLTTFY 574
+P G F L+ LT
Sbjct: 71 AIPTGVFDKLTQLTQLD 87
Score = 36.1 bits (84), Expect = 0.011
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
T+ L L++N + + + L NL L + NKL+ +P F L +LD++
Sbjct: 33 TDKQRLWLNNNQITKL---EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 316 HNNFESMP 323
N+ +S+P
Sbjct: 90 DNHLKSIP 97
Score = 34.2 bits (79), Expect = 0.053
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
L NL L + N I + KLT L LDL+ N L +P F N K L +
Sbjct: 55 HLVNLQQLYFNSNKLTAI---PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111
Query: 314 ISHNN 318
+ +NN
Sbjct: 112 L-YNN 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 45.3 bits (107), Expect = 4e-05
Identities = 48/353 (13%), Positives = 107/353 (30%), Gaps = 54/353 (15%)
Query: 251 ESMSQKLTNLTVLDLSHNNHQDINFVQ-ESMSQKLTNLIVLDLSHNKLSELPDFLNF-KV 308
++Q T+L VL+ I+ E++++ +L+ + + ++ EL F
Sbjct: 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244
Query: 309 LKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDIS 368
L+E + + + P K + +S+ MP+ L ++ KLD+
Sbjct: 245 LEEFCGGS--LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLL 301
Query: 369 HNQI---KILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLC--LKELNMSSTDPFFEH 423
+ + + L+ + IG + E C LK L +
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA---QYCKQLKRLRIERGA----D 354
Query: 424 LPIWLLNHMELKENGVFS------NLISLHMQNT-------AAVMSNVSQLKYLKNIKYL 470
+ + G+ + L + + + ++ + + L + +
Sbjct: 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414
Query: 471 NCSNDIDHRKSQDFVNVLWELP-LSILYLSS-------------------IQELHLSNVQ 510
D ++L L ++ + L V
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474
Query: 511 L--NCIPEDIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSYNKLTM 559
+ E L+KL + + + L SL+ L V + +M
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527
Score = 30.7 bits (69), Expect = 1.4
Identities = 36/328 (10%), Positives = 85/328 (25%), Gaps = 90/328 (27%)
Query: 251 ESMSQKLTNLTVLDLSHNNH-QDINFVQ-----------ESMSQKLTNLIVLDLSHNKLS 298
+ +S++ NL L L N + +S L L + +S
Sbjct: 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS 125
Query: 299 ----ELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
+ L+ L + C + L
Sbjct: 126 DLDLDRLAKARADDLETLKLDK--------CSGF------------TTDG-------LLS 158
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNM 414
+ H K+ L + + L + + L+ LN
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKD----GKWLHELAQH---------------NTSLEVLNF 199
Query: 415 SS------TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIK 468
+ E + +L+S+ + + + V K N++
Sbjct: 200 YMTEFAKISPKDLETIARNC------------RSLVSVKVGDFEIL-ELVGFFKAAANLE 246
Query: 469 YLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLN 528
+ + + +++++ + L LS + N +P + KL+
Sbjct: 247 EFCGGSLNEDIGMPEKY-------MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299
Query: 529 ISHNKVY--KLPESFANLKSLKILDVSY 554
+ + + +L++L+
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRN 327
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 42.6 bits (101), Expect = 7e-05
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNK 556
++ Q L+L + Q+ + + L L +L++ +N++ LP F L L L ++ N+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 557 LTMLPDG-FVMLSNLTTFY 574
L +P G F L +LT +
Sbjct: 90 LKSIPRGAFDNLKSLTHIW 108
Score = 41.8 bits (99), Expect = 1e-04
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLT 558
S + S L +P I + L + N++ KL F L L LD+ N+LT
Sbjct: 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 559 MLPDG-FVMLSNLTTFY 574
+LP G F L+ LT
Sbjct: 68 VLPAGVFDKLTQLTQLS 84
Score = 36.8 bits (86), Expect = 0.007
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDIS 315
T VL L N + + + +LT L LDL +N+L+ LP F L +L ++
Sbjct: 30 TTTQVLYLYDNQITKL---EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 316 HNNFESMP 323
N +S+P
Sbjct: 87 DNQLKSIP 94
Score = 35.7 bits (83), Expect = 0.019
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELD 313
+LT LT LDL +N + + KLT L L L+ N+L +P F N K L +
Sbjct: 52 RLTQLTRLDLDNNQLTVL---PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108
Query: 314 ISHNN 318
+ NN
Sbjct: 109 L-LNN 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 42.4 bits (100), Expect = 3e-04
Identities = 46/365 (12%), Positives = 104/365 (28%), Gaps = 112/365 (30%)
Query: 257 LTNLTV--LDLSHNN--HQDINFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFL-NF 306
+ ++ L + +D V + + ++ + LS N + L + + +
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 307 KVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLD 366
K L+ + S + D + L KL +
Sbjct: 60 KDLEIAEFSDIFTGRV------------------KDEIPEALRLLLQALLKC-PKLHTVR 100
Query: 367 ISHNQI---------KILHKPRCTHTLQTFSMNHN-IG-----------MKIPEWFWYQE 405
+S N L K L+ +++N +G ++ +
Sbjct: 101 LSDNAFGPTAQEPLIDFLSKHT---PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKN 157
Query: 406 FLCLKELNMSSTDPFFEHLPIWLLNHME----------LKENGVFSNLISLHMQNT---- 451
L+ + N +E + + L ++ M
Sbjct: 158 APPLRSIICGR-------------NRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIRP 201
Query: 452 AAVMSNVSQ-LKYLKNIKYLN-CSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNV 509
+ + + L Y + +K L+ N H S L P +++EL L++
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-------NLRELGLND- 253
Query: 510 QLNCIPEDIGNLIC----------LEKLNISHNK-----VYKLPESFA-NLKSLKILDVS 553
+ + L+ L + +N+ V L + L L+++
Sbjct: 254 --CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311
Query: 554 YNKLT 558
N+ +
Sbjct: 312 GNRFS 316
Score = 36.2 bits (84), Expect = 0.027
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 255 QKLTNLTVLDLSHNNHQD---INFVQESMSQKLTNLIVLDLSHNKLSE-----LPDFL-- 304
+ NL L L+ V + L L L +N++ L +
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300
Query: 305 NFKVLKELDISHNNF 319
L L+++ N F
Sbjct: 301 KMPDLLFLELNGNRF 315
Score = 34.3 bits (79), Expect = 0.093
Identities = 16/83 (19%), Positives = 21/83 (25%), Gaps = 16/83 (19%)
Query: 255 QKLTNLTVLDLSHNNHQDINFVQ-ESMSQKLTNLIVLDLSHNKLSE-------------- 299
K L + LS N K T L L L +N L
Sbjct: 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150
Query: 300 -LPDFLNFKVLKELDISHNNFES 321
N L+ + N E+
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLEN 173
Score = 31.6 bits (72), Expect = 0.74
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 18/81 (22%)
Query: 252 SMSQKLTNLTVLDLSHNNHQDINFVQESMS------QKLTNLIVLDLSHNKLSE------ 299
++ L + N ++ SM Q L + + N +
Sbjct: 153 KKAKNAPPLRSIICGRNRLEN-----GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207
Query: 300 LPDFL-NFKVLKELDISHNNF 319
L + L + LK LD+ N F
Sbjct: 208 LLEGLAYCQELKVLDLQDNTF 228
Score = 29.7 bits (67), Expect = 3.3
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 500 SIQELHLSNVQLN-----CIPEDIGNLICLEKLNISHNK-----VYKLPESFANLKSLKI 549
SI+ L + + + ++++ +S N L E+ A+ K L+I
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 550 LDVSYNKLTMLPD 562
+ S + D
Sbjct: 65 AEFSDIFTGRVKD 77
Score = 28.1 bits (63), Expect = 9.0
Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 251 ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKL---TNLIVLDLSHNKLSE 299
+ +K+ +L L+L+ N + + V + + + + +L +
Sbjct: 296 TVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELT 347
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 3e-04
Identities = 53/288 (18%), Positives = 89/288 (30%), Gaps = 103/288 (35%)
Query: 49 EADISQLEAPTF--TTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIHTCEKCEKPI-MIY 105
AD + F I P + T+H GEK K I Y
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNL-------TIHFGGEK------------GKRIRENY 1688
Query: 106 GRMICTIMKFGKEITT-VLEEDTNSGTQDTITNNSVEMD--ENT--------------VK 148
MI + GK T + +E T T + + + T +K
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 149 TEAL--STRTFCDH---E----------LQSIEDDI-LVQL------ECLHIDNNKAQEY 186
++ L + TF H E + SIE + +V + D Y
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVM-SIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 187 -IVSMNVDR-TPGFKLQNNDNDQNTKVTNAMDIAMELIDTE---------LNCCNKQYHD 235
++++N R F + A+ +E + N N+QY
Sbjct: 1808 GMIAINPGRVAASFSQE------------ALQYVVERVGKRTGWLVEIVNYNVENQQY-- 1853
Query: 236 IFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFV--QESMS 281
V + D+ + +TN+ L+ Q I+ + Q+S+S
Sbjct: 1854 ---V-AA-GDLRAL-----DTVTNV----LNFIKLQKIDIIELQKSLS 1887
Score = 41.2 bits (96), Expect = 0.001
Identities = 46/265 (17%), Positives = 79/265 (29%), Gaps = 94/265 (35%)
Query: 336 YKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGM 395
Y S DI NN P+ L +HF I N + F + +
Sbjct: 1657 YGFSILDIVINN----PVNLTIHFGGEKGKRIRENYSAM-----------IFETIVDGKL 1701
Query: 396 KIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHME----------------LKENGV 439
K + F KE+N ST F LL+ + LK G+
Sbjct: 1702 KTEKIF--------KEINEHSTSYTFRS-EKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 440 --------------FSNLISLHMQNTAAVMSNVSQLKYLKNI--KYLNCSNDIDHRKSQD 483
++ L SL A VMS + L + + + D +
Sbjct: 1753 IPADATFAGHSLGEYAALASL-----ADVMS-IESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 484 F----VNVLWELPLSI---LYLSSIQEL----------HLSNVQLNCIPEDI---GNLIC 523
+ +N P + ++Q + + V N + G+L
Sbjct: 1807 YGMIAIN-----PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA 1861
Query: 524 LEKLN--ISHNKV-----YKLPESF 541
L+ + ++ K+ +L +S
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSL 1886
Score = 31.2 bits (70), Expect = 1.2
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 17/64 (26%)
Query: 53 SQLEAPTFT----------TITRGPPKPMLSLRWDHTVHLIGEKVLNPIIHTCEK--CEK 100
P + G P PMLS+ +L E+V + + T K
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-----NLTQEQVQDYVNKTNSHLPAGK 364
Query: 101 PIMI 104
+ I
Sbjct: 365 QVEI 368
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 40.5 bits (95), Expect = 0.001
Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 32/156 (20%)
Query: 238 TVNLSHQDINFVQESMSQK-LTNLTVLDLSHNN--HQDINFVQESMSQKLTNLIVLDLSH 294
++ F + S + L++L L+L+ V + L ++L+
Sbjct: 51 LLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS 110
Query: 295 NKLSE--LPDFLN-FKVLKELDISHNNFES---MPLC--LQVHFYVHIPYKHSQS----- 341
+L L L F ++L + N+ L L H Q
Sbjct: 111 CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL----------LHDQCQITTL 160
Query: 342 DISHNNFES---MPLC--LQVHFCKLVKLDISHNQI 372
+S+N + L L + + L + H +
Sbjct: 161 RLSNNPLTAAGVAVLMEGLAGN-TSVTHLSLLHTGL 195
Score = 38.9 bits (91), Expect = 0.004
Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 28/144 (19%)
Query: 246 INFVQESMSQKLTNLTVLDLSH--NNHQDINFVQESMSQKLTNLIVLDLSHNKLSE---- 299
+ + Q L +LD Q+ F E + ++L L+L+ +++
Sbjct: 35 KKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVL----SSLRQLNLAGVRMTPVKCT 90
Query: 300 -LPDFL--NFKVLKELDISHNNF--ESMPLCLQVHFYVHIPYKHSQS-DISHNNFES--- 350
+ L L E++++ + L V ++ + N+
Sbjct: 91 VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-------LRARKLGLQLNSLGPEAC 143
Query: 351 MPLC--LQVHFCKLVKLDISHNQI 372
L L C++ L +S+N +
Sbjct: 144 KDLRDLLLHDQCQITTLRLSNNPL 167
Score = 35.1 bits (81), Expect = 0.054
Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 45/172 (26%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKL---TNLIVLDLSHNK 296
+L + +++ + +T L LS+N + + L T++ L L H
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV--AVLMEGLAGNTSVTHLSLLHTG 194
Query: 297 LSE-----LPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFES 350
L + L L + L+EL++++N +
Sbjct: 195 LGDEGLELLAAQLDRNRQLQELNVAYNG------------------------AGDTAALA 230
Query: 351 MPLCLQVHFCKLVKLDISHNQI---------KILHKPRCTHTLQTFSMNHNI 393
+ + H L L + N++ + +
Sbjct: 231 LARAAREH-PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281
Score = 29.7 bits (67), Expect = 3.0
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 16/73 (21%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLIC--------LEKLNISHNK-----VYKLPESFANLK 545
I L LSN N + ++ + L++ H + L +
Sbjct: 155 CQITTLRLSN---NPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211
Query: 546 SLKILDVSYNKLT 558
L+ L+V+YN
Sbjct: 212 QLQELNVAYNGAG 224
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 39.9 bits (92), Expect = 0.002
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 254 SQKLTNLTVLDLSHNNHQDINFVQESMS-QKLTNLIVLDLSHNKLSE 299
S L L +D+S D K+ +L +++ +N LS+
Sbjct: 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
Score = 39.6 bits (91), Expect = 0.003
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 441 SNLISLHMQNTAAVMSNVSQL--KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYL 498
NL SL + + S V + L N++ L ++ +NV L S
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRF 251
Query: 499 SSIQELHLSNVQLNC-IPEDIGN---LICLEKLNISHNK-----VYKLPESFANLKSLKI 549
+++ L + + + + E L LE ++IS L + +K LK
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311
Query: 550 LDVSYNKLT 558
+++ YN L+
Sbjct: 312 INMKYNYLS 320
Score = 34.9 bits (79), Expect = 0.066
Identities = 16/137 (11%), Positives = 35/137 (25%), Gaps = 36/137 (26%)
Query: 247 NFVQESMSQKLTNLTVLDLSHNNHQDI------NFVQESMSQKLTNLIVLDLSHNKLSE- 299
+ V++ + L NL L L F + NL L + +
Sbjct: 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV 267
Query: 300 ----LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
+ L+ +DIS ++ + +
Sbjct: 268 VVEMFLESDILPQLETMDISAGV------------------------LTDEGARLLLDHV 303
Query: 356 QVHFCKLVKLDISHNQI 372
L +++ +N +
Sbjct: 304 D-KIKHLKFINMKYNYL 319
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 33.7 bits (76), Expect = 0.037
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 92 IHTCEKCEKPIMIYGRMI 109
+H C+KC PI +YGRMI
Sbjct: 1 VHFCDKCGLPIKVYGRMI 18
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 33.7 bits (77), Expect = 0.19
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 251 ESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN----KLSELPDFLNF 306
++ + LT L+LS+ Q + V+ + + L L + L L
Sbjct: 282 PAVYSVCSRLTTLNLSYATVQSYDLVK--LLCQCPKLQRLWVLDYIEDAGLEVL--ASTC 337
Query: 307 KVLKELDISHNNFESMPLCLQV 328
K L+EL + + M + +
Sbjct: 338 KDLRELRVFPSEPFVMEPNVAL 359
Score = 33.3 bits (76), Expect = 0.27
Identities = 58/335 (17%), Positives = 97/335 (28%), Gaps = 68/335 (20%)
Query: 226 LNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLT 285
L + + E+MS T L + L D E +++
Sbjct: 73 LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL--ELIAKSFK 130
Query: 286 NLIVLDLSH-NKLSE--LPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQS 341
N VL LS S L + LKELD+ ++
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV---------------------D 169
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWF 401
D+S + P LV L+IS C + +FS + + P
Sbjct: 170 DVSGHWLSHFPDTYT----SLVSLNIS-----------CLASEVSFSALERLVTRCPN-- 212
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
LK L ++ P + + L+E G + + + L
Sbjct: 213 -------LKSLKLNRAVPLEKLATLLQRAPQ-LEELGTGGYTAEVRPDVYSGLSVA---L 261
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQL--NCIPEDIG 519
K ++ L+ D LP S + L+LS + + + +
Sbjct: 262 SGCKELRCLSGFWDAVPA----------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311
Query: 520 NLICLEKLNISHNKVYKLPESFA-NLKSLKILDVS 553
L++L + E A K L+ L V
Sbjct: 312 QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346
Score = 31.4 bits (71), Expect = 1.1
Identities = 54/353 (15%), Positives = 109/353 (30%), Gaps = 55/353 (15%)
Query: 251 ESMSQKLTNLTVLDLS--HNNHQDINFVQESMSQKLTNLIVLDLSHN-KLSELPDFLNF- 306
T+L L++S + E + + NL L L+ L +L L
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSAL--ERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234
Query: 307 KVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV--HFCK-LV 363
L+EL E P + ++++P L C L
Sbjct: 235 PQLEELGTGGYTAEVRPDVY--SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT 292
Query: 364 KLDISHNQI------KILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLC--LKELNMS 415
L++S+ + K+L + C LQ + I C L+EL +
Sbjct: 293 TLNLSYATVQSYDLVKLLCQ--CPK-LQRLWVLDYIE---DAGLEVLASTCKDLRELRVF 346
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNT----AAVMSNVSQLKYLKNIKYLN 471
++PF + L + + L S+ AA+++ + +
Sbjct: 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406
Query: 472 CSNDIDHRKSQDFVNV-----------LWELPLS-------ILYLS----SIQELHLSNV 509
+ + +++ L L LS Y+ ++ L ++
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466
Query: 510 QL--NCIPEDIGNLICLEKLNISHNKV--YKLPESFANLKSLKILDVSYNKLT 558
+ + L KL I L + + L++++ L +S ++
Sbjct: 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519
Score = 30.3 bits (68), Expect = 2.0
Identities = 46/325 (14%), Positives = 88/325 (27%), Gaps = 79/325 (24%)
Query: 251 ESMSQKLTNLTVLDLSH------------NNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
++ ++ + ++L + E+MS T L + L ++
Sbjct: 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT 118
Query: 299 E--LPDFL-NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
+ L +FK K L +S C S ++ +
Sbjct: 119 DDCLELIAKSFKNFKVLVLSS--------CEGF----------STDGLAA---------I 151
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
L +LD+ + + + H L F + L LN+S
Sbjct: 152 AATCRNLKELDLRESDVDDVSG----HWLSHFPDT---------------YTSLVSLNIS 192
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLN---C 472
+ L NL SL + + + L+ ++ L
Sbjct: 193 CLASEVSFSALERLVTR-------CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245
Query: 473 SNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHN 532
+ ++ L + LS + +P L LN+S+
Sbjct: 246 TAEVRPDVYSGLSVALSGC-KELRCLS-----GFWDAVPAYLPAVYSVCSRLTTLNLSYA 299
Query: 533 KV--YKLPESFANLKSLKILDVSYN 555
V Y L + L+ L V
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDY 324
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 31.3 bits (71), Expect = 0.36
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 258 TNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
+ T L L+ NN + + + L L L N
Sbjct: 31 VDTTELVLTGNN---LTALPPGLLDALPALRTAHLGAN 65
Score = 30.9 bits (70), Expect = 0.38
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 285 TNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNF 319
+ L L+ N L+ LP L+ + N +
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 29.0 bits (65), Expect = 1.7
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 546 SLKILDVSYNKLTMLPDG-FVMLSNLTTFY 574
L ++ N LT LP G L L T +
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAH 61
Score = 27.5 bits (61), Expect = 5.9
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 524 LEKLNISHNKVYKLPE-SFANLKSLKILDVSYN 555
+L ++ N + LP L +L+ + N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 31.5 bits (72), Expect = 0.53
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLIC--------LEKLNISHNK-----VYKLPESFANLK 545
++E++L+N+ IP ++K +I + + L E
Sbjct: 36 PDLEEVNLNNI--MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN 93
Query: 546 SLKILDVSYNKLTMLPDGFVMLSN 569
+LK L+V N ++ G + L
Sbjct: 94 TLKSLNVESNFIS--GSGILALVE 115
Score = 30.0 bits (68), Expect = 1.6
Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 249 VQESMSQKLTN---LTVLDLSHNNHQDINFVQE--SMSQKLTNLIVLDLSHNKLSE---- 299
V+E++ + N L ++L++ + + ++ + T + + + ++
Sbjct: 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF 83
Query: 300 -LPDFLNF-KVLKELDISHNN 318
L + L LK L++ N
Sbjct: 84 ALAEMLKVNNTLKSLNVESNF 104
Score = 28.0 bits (63), Expect = 7.0
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 20/96 (20%)
Query: 238 TVNLSHQDINFVQESMSQKL-------TNLTVLDLSHNNHQDINFVQESMSQKL---TNL 287
VNL+ +I + + T + + D V ++++ L L
Sbjct: 40 EVNLN--NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP--VAFALAEMLKVNNTL 95
Query: 288 IVLDLSHNKLSE-----LPDFLNF-KVLKELDISHN 317
L++ N +S L + L L EL I +
Sbjct: 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQ 131
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 31.0 bits (70), Expect = 0.75
Identities = 8/84 (9%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNH---QDINFVQESMSQKLTNLIVLDLSHN 295
++ + I + + L + + L ++ + + + +++ +++
Sbjct: 66 IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-QLENLQKSMLEMEIISC 124
Query: 296 -KLSE--LPDFLNFKVLKELDISH 316
+++ + +F+ LK L +S
Sbjct: 125 GNVTDKGIIALHHFRNLKYLFLSD 148
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 30.2 bits (68), Expect = 1.3
Identities = 8/82 (9%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 249 VQESMSQKLTN---LTVLDLSHNNHQDINFVQE--SMSQKLTNLIVLDLSHNKLSE---- 299
V+ +++ + L +++++ ++ + ++ L++ +S+
Sbjct: 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR 88
Query: 300 -LPDFLNF-KVLKELDISHNNF 319
L + + L+ L++ N
Sbjct: 89 GLIELIETSPSLRVLNVESNFL 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 29.5 bits (66), Expect = 3.2
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE--LPDFLNFKVLKELD 313
+ +DLS++ + + + + L L L +LS+ + L L+
Sbjct: 91 SPFRVQHMDLSNSVIEVSTL--HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148
Query: 314 ISH 316
+S
Sbjct: 149 LSG 151
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 27.9 bits (63), Expect = 7.6
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 167 DDILVQLECLHIDNNKAQEYIVSMNVDR 194
D +L +E L E + + D
Sbjct: 204 DPLLKDIEALFQTKPIDTETLAQLGYDE 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.404
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,579,055
Number of extensions: 496041
Number of successful extensions: 5457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1589
Number of HSP's successfully gapped: 534
Length of query: 594
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 495
Effective length of database: 3,937,614
Effective search space: 1949118930
Effective search space used: 1949118930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)