RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6452
(594 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 86.6 bits (213), Expect = 6e-19
Identities = 59/363 (16%), Positives = 118/363 (32%), Gaps = 35/363 (9%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+ N L +T L + I+ V+ L NL ++ S+N+L+
Sbjct: 25 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVE-----YLNNLTQINFSNNQLT 79
Query: 299 ELPDFLNFKVLKELDISHNNFE--------------SMPLCLQVHFYVHIPYKHSQSDIS 344
++ N L ++ +++N ++ +
Sbjct: 80 DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
+N S L + T S N + +
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199
Query: 405 EFLCLKELNMSSTDP--FFEHLPIWLLNHMELKENGVFSNLISLH-MQNTAAVMSNVSQL 461
E L +S P +L LN +LK+ G ++L +L + +SN++ L
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 259
Query: 462 KYLKNIKYLNCSND----------IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQL 511
L + L + + + + E I L ++ L L +
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319
Query: 512 NCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
+ I + +L L++L ++NKV + S ANL ++ L +N+++ L L+ +T
Sbjct: 320 SDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRIT 376
Query: 572 TFY 574
Sbjct: 377 QLG 379
Score = 53.1 bits (126), Expect = 5e-08
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 6/160 (3%)
Query: 165 IEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDI-AMELID 223
IL L+ L ++ N+ ++ ++ L NN ++ + ++L
Sbjct: 213 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 272
Query: 224 TELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQK 283
+++ + NL + S L NLT L L NN DI+ V
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-----S 327
Query: 284 LTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
LT L L ++NK+S++ N + L HN +
Sbjct: 328 LTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT 367
Score = 52.3 bits (124), Expect = 8e-08
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTN 286
+ + L+ N S LT L L ++N D++ + LTN
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLA-----NLTN 352
Query: 287 LIVLDLSHNKLSELPDFLNFKVLKELDISHN 317
+ L HN++S+L N + +L ++
Sbjct: 353 INWLSAGHNQISDLTPLANLTRITQLGLNDQ 383
Score = 44.2 bits (103), Expect = 3e-05
Identities = 43/306 (14%), Positives = 94/306 (30%), Gaps = 61/306 (19%)
Query: 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTN 286
N L+ ++ + L + S+ KLTN
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198
Query: 287 LIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHN 346
L L ++N++S++ L EL ++ N + + + + D+++N
Sbjct: 199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL-------DLANN 251
Query: 347 NFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEF 406
++ KL +L + NQI + L +N N
Sbjct: 252 QISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED---ISPISNL 306
Query: 407 LCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKN 466
L L + + +S++S + L
Sbjct: 307 KNLTYLTLYFNN------------------------------------ISDISPVSSLTK 330
Query: 467 IKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEK 526
++ L +N N + ++ S+ L++I L + Q++ + + NL + +
Sbjct: 331 LQRLFFAN-----------NKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQ 377
Query: 527 LNISHN 532
L ++
Sbjct: 378 LGLNDQ 383
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 82.6 bits (202), Expect = 1e-17
Identities = 53/336 (15%), Positives = 99/336 (29%), Gaps = 29/336 (8%)
Query: 249 VQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKV 308
V L+L++ S+ + +L L S N L+ELP+ +
Sbjct: 29 VSRLRDCLDRQAHELELNNLG-------LSSLPELPPHLESLVASCNSLTELPELP--QS 79
Query: 309 LKELDISHNNFESMPL-----------CLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
LK L + +NN +++ Q+ + I +N L
Sbjct: 80 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139
Query: 358 HFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417
+ + + + + T N + L
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199
Query: 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDID 477
L ++ LK + + + L +
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259
Query: 478 HRKSQDFVNVLW---ELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKV 534
+ + E+ S++EL++SN +L +P L E+L S N +
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHL 316
Query: 535 YKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNL 570
++PE ++LK L V YN L PD + +L
Sbjct: 317 AEVPEL---PQNLKQLHVEYNPLREFPDIPESVEDL 349
Score = 49.8 bits (117), Expect = 4e-07
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTN 286
++ + S+ +L L++S+N ++
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-------PALPPR 305
Query: 287 LIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
L L S N L+E+P+ + LK+L + +N P
Sbjct: 306 LERLIASFNHLAEVPELP--QNLKQLHVEYNPLREFP 340
Score = 40.2 bits (92), Expect = 5e-04
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 499 SSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
EL L+N+ L+ +PE +L E L S N + +LPE +LKSL + + + L+
Sbjct: 38 RQAHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94
Query: 559 MLPDGFVMLSNLTTFYAQRKYWMFL 583
LP L +
Sbjct: 95 DLPPLLEYLGVSNNQLEKLPELQNS 119
Score = 36.0 bits (81), Expect = 0.010
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 524 LEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583
+L +++ + LPE +L+SL S N LT LP+ L +L K L
Sbjct: 40 AHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96
Query: 584 TISLLCYLM 592
L +
Sbjct: 97 PPLLEYLGV 105
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 67.4 bits (163), Expect = 7e-13
Identities = 47/333 (14%), Positives = 104/333 (31%), Gaps = 67/333 (20%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
V S + V + + + +LDL +N I +++ + L NL L L +NK+
Sbjct: 14 VVQCSDLGLEKVPKDLP---PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKI 67
Query: 298 SELPD--FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCL 355
S++ F L+ L +S N + +P + +++ + + + F + +
Sbjct: 68 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127
Query: 356 QVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMS 415
V + F + L +
Sbjct: 128 VVELG---------------------------TNPLKSSGIENGAFQGMKKLSYIRIAD- 159
Query: 416 STDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSND 475
++ G+ +L LH+ + + LK L N+ L S +
Sbjct: 160 --------------TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 476 IDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY 535
+ L +ELHL+N +L +P + + ++ + + +N +
Sbjct: 206 SISAVDNGSLANTPHL----------RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255
Query: 536 KLPES-------FANLKSLKILDVSYNKLTMLP 561
+ + S + + N +
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288
Score = 56.2 bits (134), Expect = 3e-09
Identities = 46/296 (15%), Positives = 86/296 (29%), Gaps = 28/296 (9%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
D ++L + I +++ + L NL L L +N I L L L LS
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI---SPGAFAPLVKLERLYLSK 88
Query: 295 NKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
N+L ELP+ + + +EL + N + + F + + +
Sbjct: 89 NQLKELPEKMPKTL-QELRVHENEITKVRKSV---FNGLNQMIVVELGTNPLKSSGIENG 144
Query: 355 LQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLKELN 413
KL + I+ I + + L ++ N I L +L
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQGLPPS-LTELHLDGNKITKVDAASLKGLNNLA--KLG 201
Query: 414 MSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCS 473
+S + + + L+ + K I+ +
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-----------DHKYIQVVYLH 250
Query: 474 -NDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLN 528
N+I S DF P +S + L + + C+
Sbjct: 251 NNNISAIGSNDFC-----PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
Score = 42.3 bits (98), Expect = 9e-05
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 499 SSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKL-PESFANLKSLKILDVSYNK 556
L L N ++ I + D NL L L + +NK+ K+ P +FA L L+ L +S N+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 557 LTMLPDGFVM 566
L LP+
Sbjct: 91 LKELPEKMPK 100
Score = 41.9 bits (97), Expect = 1e-04
Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 19/153 (12%)
Query: 152 LSTRTFCDHELQSIEDDILVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKV 211
LS D + +I + L LH+D NK + + KL + N +
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211
Query: 212 TNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQ 271
++ L + LN + + V+ L +NN
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGLAD----------------HKYIQVVYLHNNNIS 255
Query: 272 DIN---FVQESMSQKLTNLIVLDLSHNKLSELP 301
I F + K + + L N +
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288
Score = 36.2 bits (82), Expect = 0.009
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 19/159 (11%)
Query: 440 FSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLS 499
NL +L + N + L ++ L S N L ELP +
Sbjct: 54 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSK-----------NQLKELPEKMPK-- 100
Query: 500 SIQELHLSNVQLNCIPEDI----GNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYN 555
++QEL + ++ + + + +I +E +F +K L + ++
Sbjct: 101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 160
Query: 556 KLTMLPDGFVMLSNLTTFYAQRKYWMFLTISLLCYLMGL 594
+T +P G + +LT + + + L L L
Sbjct: 161 NITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNL 197
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 55.1 bits (131), Expect = 8e-09
Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 3/252 (1%)
Query: 309 LKELDISHNNFE---SMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKL 365
+ LD+S N +P L Y++ Y +++ ++ Q+H+ +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 366 DISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLP 425
++S L + + TL + + + N S +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 426 IWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFV 485
L + I N ++S+ + L S+ +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 486 NVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLK 545
++ ++L L + +N +P+ + L L LN+S N + NL+
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291
Query: 546 SLKILDVSYNKL 557
+ + NK
Sbjct: 292 RFDVSAYANNKC 303
Score = 40.9 bits (94), Expect = 3e-04
Identities = 37/243 (15%), Positives = 71/243 (29%), Gaps = 11/243 (4%)
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDI-----SHNQIKILHKPRCTHTLQTFSMNHNIGMK 396
D+S N P + L L+ +N + + T + + +
Sbjct: 56 DLSGLNL-PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 397 IPEWFWYQEFLCLKELNMSSTDPFFEHLPIW----LLNHMELKENGVFSNLISLHMQNTA 452
+ + L L+ S P L + N + + + +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 453 AVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN 512
S L +N + + + + Q++HL+ L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 513 CIPEDIGNLICLEKLNISHNKVY-KLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLT 571
+G L L++ +N++Y LP+ LK L L+VS+N L L
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294
Query: 572 TFY 574
Sbjct: 295 VSA 297
Score = 29.7 bits (65), Expect = 1.1
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTN 286
++ ++L + I +L L L++S NN + L
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG----EIPQGGNLQR 292
Query: 287 LIVLDLSHNKL 297
V ++NK
Sbjct: 293 FDVSAYANNKC 303
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 54.3 bits (129), Expect = 1e-08
Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 6/209 (2%)
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHN-IGMKIPEWFWYQEFLCLK 410
P+C ++++ + L P ++ N + + L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTAL-PPDLPKDTTILHLSENLLYTFSLATL--MPYTRLT 58
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYL 470
+LN+ + + L L + + L Q A+ L ++
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 471 NCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLS--NVQLNCIPEDIGNLICLEKLN 528
+ ++ N L LP +L + E N + L L+ L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 529 ISHNKVYKLPESFANLKSLKILDVSYNKL 557
+ N +Y +P+ F L + N
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
Score = 40.5 bits (93), Expect = 4e-04
Identities = 17/188 (9%), Positives = 48/188 (25%), Gaps = 11/188 (5%)
Query: 256 KLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELP--DFLNFKVLKELD 313
K+ + ++ N + + +L LS N L + + L +L+
Sbjct: 8 KVASHLEVNCDKRNLTALP------PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 314 ISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIK 373
+ + + + + + + + ++ +
Sbjct: 62 LDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 374 ILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHME 433
L L + N + P + L+ +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 434 LKENGVFS 441
L+EN +++
Sbjct: 179 LQENSLYT 186
Score = 33.9 bits (76), Expect = 0.045
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 4/154 (2%)
Query: 170 LVQLECLHIDNNKAQEYIVSM---NVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTEL 226
+L L++D + + V + Q + A+ + +
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTN 286
+ + + + N ++ LT L+ + ++ + + L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 287 LIVLDLSHNKLSELP-DFLNFKVLKELDISHNNF 319
L L L N L +P F +L + N +
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
Score = 32.8 bits (73), Expect = 0.087
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 517 DIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDG-FVMLSNLTTFYA 575
++ + ++N + LP K IL +S N L + + LT
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 576 QRKYWMF 582
R
Sbjct: 63 DRAELTK 69
Score = 30.8 bits (68), Expect = 0.34
Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 17/205 (8%)
Query: 235 DIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSH 294
D ++LS + + T LT L+L + + L L LDLSH
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-----VDGTLPVLGTLDLSH 86
Query: 295 NKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLC 354
N+L LP ++ + L + + + + N +++P
Sbjct: 87 NQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 355 LQVHFCKLVKLDISHNQIKILHKP--RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKEL 412
L KL KL +++N + L L T + N IP+ F+ L
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF--GSHLLPFA 200
Query: 413 NMSST----DPFFEHLPIWLLNHME 433
+ + + WL ++ E
Sbjct: 201 FLHGNPWLCNCEILYFRRWLQDNAE 225
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 54.0 bits (128), Expect = 2e-08
Identities = 34/277 (12%), Positives = 72/277 (25%), Gaps = 29/277 (10%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
+ L N++S +P F+ + L I + + F + +
Sbjct: 32 AASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQ---TFSMNHNIGMKIPEWF 401
P +L L + ++ L + ++ + + F
Sbjct: 91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L L+ N + F L SL + N
Sbjct: 150 RDLGNLTHLFLHG---------------NRISSVPERAFRGLHSLDRLL---LHQNRVAH 191
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNL 521
+ + L + + ++ L ++Q L L++ C
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNL----SALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247
Query: 522 ICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLT 558
L+K S ++V L + ++ N L
Sbjct: 248 AWLQKFRGSSSEVP--CSLPQRLAGRDLKRLAANDLQ 282
Score = 35.6 bits (80), Expect = 0.013
Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 10/209 (4%)
Query: 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLS 293
+ L I+ V + + NLT+L L N I+ + L L + D +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 294 HNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPL 353
+ + F L L + + + + N +++P
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELG-----PGLFRGLAALQYLYLQDNALQALPD 146
Query: 354 CLQVHFCKLVKLDISHNQIKILHKPRCT--HTLQTFSMNHNIGMKIPE---WFWYQEFLC 408
L L + N+I + + H+L ++ N + +
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 409 LKELNMSSTDPFFEHLPIWLLNHMELKEN 437
N S P P+ L ++ L +N
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 35.2 bits (79), Expect = 0.017
Identities = 36/269 (13%), Positives = 83/269 (30%), Gaps = 24/269 (8%)
Query: 162 LQSIEDDILVQLECLHIDNNKAQEYIVS----------MNVDRTPGFKLQNNDNDQNTKV 211
LQ++ I + + + N+ + + + ++ +
Sbjct: 23 LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 212 TNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQ 271
+ + + T++L + + + + L L L L N
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-- 140
Query: 272 DINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNF-ESMPLCLQV 328
+ + + + L NL L L N++S +P+ F L L + N P +
Sbjct: 141 -LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 329 HFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHT-LQTF 387
+ + NN ++P L L ++ N + R LQ F
Sbjct: 200 LGRLMTL------YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF 253
Query: 388 SMNHN-IGMKIPEWFWYQEFLCLKELNMS 415
+ + + +P+ ++ L ++
Sbjct: 254 RGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 53.3 bits (126), Expect = 3e-08
Identities = 32/318 (10%), Positives = 81/318 (25%), Gaps = 12/318 (3%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQ-ESMSQKLTNLIVLDLSHNKLS 298
++ +D V + + ++ + LS N +L + + S
Sbjct: 14 AITTEDEKSVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 299 ELPDFL--NFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ D + ++L + + ++ L
Sbjct: 73 RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132
Query: 357 VHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
+ K+ + ++ + K + L++ N W + F + L+
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 192
Query: 417 TDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDI 476
+E L L +Q+ S L +
Sbjct: 193 MVQNGIRPEGIEHLLLEGLAY--CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 250
Query: 477 DHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLN-----CIPEDI-GNLICLEKLNIS 530
+ S L +Q L L ++ + I + L L ++
Sbjct: 251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 310
Query: 531 HNKVYKLPESFANLKSLK 548
N+ + + ++ +
Sbjct: 311 GNRFSEEDDVVDEIREVF 328
Score = 31.8 bits (70), Expect = 0.24
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 500 SIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK-----VYKLPESFANLKSLKILDVSY 554
S++ ++ + + ++++ +S N L E+ A+ K L+I + S
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 555 NKLTMLPD 562
+ D
Sbjct: 69 IFTGRVKD 76
Score = 30.2 bits (66), Expect = 0.66
Identities = 27/272 (9%), Positives = 73/272 (26%), Gaps = 9/272 (3%)
Query: 35 PDENEEPVPTQIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIHT 94
DE E + + +L + GP + + + L+
Sbjct: 75 KDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 134
Query: 95 CEKCEKPIMIYGRMICTIMKFGKEITTVLEEDTNSGTQDTITNNSVEMDENTVKTEALST 154
+ K + + N ++ + + +
Sbjct: 135 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 194
Query: 155 RTFCDHELQSIEDDILVQ----LECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTK 210
+ E + L+ L + +N S + +
Sbjct: 195 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 254
Query: 211 VTNAMDIAMELIDTELNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNH 270
++ A+ ++L Q + + + ++ + +K+ +L L+L+ N
Sbjct: 255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314
Query: 271 QDINFVQESMSQKLTNLIVLDLSHNKLSELPD 302
+ + V + + + + +L EL D
Sbjct: 315 SEEDDVVDEIREVFST-----RGRGELDELDD 341
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 48.9 bits (115), Expect = 5e-07
Identities = 22/221 (9%), Positives = 56/221 (25%), Gaps = 15/221 (6%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
L N + +N L + L ++ + L L++
Sbjct: 18 LANAIKIAAGKSN-----VTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
N + + + + + + +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS-----TQITDVTPLAG 127
Query: 377 KPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436
+ NI + +++ + L + ++ +
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187
Query: 437 NGVFS---NLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ NLI +H++N +S+VS L N+ + +N
Sbjct: 188 ISPLASLPNLIEVHLKNNQ--ISDVSPLANTSNLFIVTLTN 226
Score = 42.3 bits (98), Expect = 6e-05
Identities = 19/193 (9%), Positives = 60/193 (31%), Gaps = 9/193 (4%)
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF 420
+ L + + + + L + N L
Sbjct: 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-------QITDLAPLKNLTKITELELSG 94
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK 480
+ + ++ + ++ + A + + L I ++ + + +
Sbjct: 95 NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ 154
Query: 481 SQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES 540
N + LS + L + +++ I + +L L ++++ +N++ +
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-P 212
Query: 541 FANLKSLKILDVS 553
AN +L I+ ++
Sbjct: 213 LANTSNLFIVTLT 225
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 226 LNCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLT 285
+ + LS + + L+ LT L N DI+ + L
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA-----SLP 195
Query: 286 NLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
NLI + L +N++S++ N L + +++
Sbjct: 196 NLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226
Score = 35.0 bits (79), Expect = 0.017
Identities = 27/214 (12%), Positives = 58/214 (27%), Gaps = 10/214 (4%)
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF 420
+K+ + + + T S + Q L L +
Sbjct: 20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGT---GVTTIEGVQYLNNLIGLELKDNQIT 76
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK 480
L EL+ +G + A + ++ L
Sbjct: 77 DLAPLKNLTKITELELSGNPL-----KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 481 SQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES 540
++++ +S L + + + NL L L NK+ +
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190
Query: 541 FANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
A+L +L + + N+++ + SNL
Sbjct: 191 LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT 223
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 45.9 bits (108), Expect = 1e-06
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 289 VLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIP------------- 335
VL L+H L+ L ++ LD+SHN ++P L + +
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 336 ---YKHSQSDISHNNFESMPLCLQVHFC-KLVKLDISHNQI 372
+ + + +N + + C +LV L++ N +
Sbjct: 62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
Score = 39.3 bits (91), Expect = 2e-04
Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 455 MSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCI 514
++ + L+ L + +L+ S+ N L LP ++ L ++ L S+ L +
Sbjct: 10 LTVLCHLEQLLLVTHLDLSH-----------NRLRALPPALAALRCLEVLQASDNALENV 58
Query: 515 PEDIGNLICLEKLNISHNKVYKLP--ESFANLKSLKILDVSYNKLTMLPD 562
L++L + +N++ + + + L +L++ N L
Sbjct: 59 DGVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
Score = 38.2 bits (88), Expect = 5e-04
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 527 LNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMFL 583
L+++H + L L + LD+S+N+L LP L L A +
Sbjct: 3 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Score = 36.2 bits (83), Expect = 0.002
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 502 QELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLP 561
+ LHL++ L + + L+ + L++SHN++ LP + A L+ L++L S N L +
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 562 DGFVM 566
+
Sbjct: 60 GVANL 64
Score = 36.2 bits (83), Expect = 0.002
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 23/105 (21%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQD------------------INFVQESMS 281
+L+H+D+ + ++L +T LDLSHN +
Sbjct: 4 HLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 282 QKLTNLIVLDLSHNKLSELPD---FLNFKVLKELDISHNNFESMP 323
L L L L +N+L + ++ L L++ N+
Sbjct: 62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
Score = 30.1 bits (67), Expect = 0.29
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 261 TVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDF 303
L L +N Q +Q L++L+L N L +
Sbjct: 68 QELLLCNNRLQQSAAIQPL--VSCPRLVLLNLQGNSLCQEEGI 108
Score = 29.3 bits (65), Expect = 0.55
Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 6/124 (4%)
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK-PRCTHTLQTFSMNHNIGMKIPEW 400
++H + + L+ + LD+SHN+++ L L+ + N +
Sbjct: 4 HLAHKDLTVLC-HLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 401 FWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQ 460
L+EL + + L++ L + N + + +
Sbjct: 62 ANLP---RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118
Query: 461 LKYL 464
+ +
Sbjct: 119 VSSI 122
Score = 28.5 bits (63), Expect = 0.89
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 310 KELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISH 369
+ L ++H + + Q+ H+ D+SHN ++P L L L S
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHL-------DLSHNRLRALPPALA-ALRCLEVLQASD 52
Query: 370 NQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
N ++ + LQ + +N + L LN+
Sbjct: 53 NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 99
Score = 27.4 bits (60), Expect = 2.6
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 232 QYHDIFTVNLSHQDINFVQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVL 290
+ + L + + L +L+L N+ +QE +++ L ++ +
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Score = 27.0 bits (59), Expect = 3.1
Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 13/110 (11%)
Query: 365 LDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHL 424
L ++H + +L + ++HN +P L + + + ++ +
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 425 PIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ L + L N + + + L + LN
Sbjct: 63 NLPRLQELLLCNNRLQQ-------------SAAIQPLVSCPRLVLLNLQG 99
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 42.2 bits (98), Expect = 4e-05
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 520 NLICLEKLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKY 579
N + +L++ K+ + A L +D S N++ L GF +L L T
Sbjct: 16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR 74
Query: 580 WM 581
Sbjct: 75 IC 76
Score = 40.3 bits (93), Expect = 2e-04
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 5/111 (4%)
Query: 247 NFVQESMS-QKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLN 305
++++ LDL I E++ L +D S N++ +L F
Sbjct: 6 ELIEQAAQYTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKLDGFPL 61
Query: 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQ 356
+ LK L +++N + L + + + L+
Sbjct: 62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 112
Score = 38.0 bits (87), Expect = 0.001
Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 33/174 (18%)
Query: 292 LSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESM 351
L+ + + + N +ELD+ +
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIE---------------------------- 34
Query: 352 PLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGM-KIPEWFWYQEFLCLK 410
L + +D S N+I+ L L+T +N+N L
Sbjct: 35 --NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 92
Query: 411 ELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
L +S + P+ L + + N ++ V+ V Q++ L
Sbjct: 93 ILTNNSLVELGDLDPLASLKSL--TYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144
Score = 34.9 bits (79), Expect = 0.009
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 488 LWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSL 547
L E +EL L ++ I L + ++ S N++ KL F L+ L
Sbjct: 7 LIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRL 65
Query: 548 KI 549
K
Sbjct: 66 KT 67
Score = 32.2 bits (72), Expect = 0.085
Identities = 5/46 (10%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 529 ISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFY 574
++ + + + N + LD+ K+ ++ + L
Sbjct: 3 LTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAID 47
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 42.8 bits (99), Expect = 7e-05
Identities = 26/212 (12%), Positives = 68/212 (32%), Gaps = 9/212 (4%)
Query: 254 SQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE--LPDFLNFKVLKE 311
+ +DLS++ + + + + L L L +LS+ + L
Sbjct: 42 HFSPFRVQHMDLSNSVIEVSTL--HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99
Query: 312 LDISHNNF---ESMPLCLQVHFYVHIPYKHSQSDISHNNFESM--PLCLQVHFCKLVKLD 366
L++S + ++ L + D + + + + + L
Sbjct: 100 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159
Query: 367 ISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPI 426
+ + + R L ++ ++ +K + + + L+ L++S +
Sbjct: 160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 219
Query: 427 WLLNHMELKENGVFSNLISLHMQNTAAVMSNV 458
L LK VF + +Q + ++
Sbjct: 220 ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 251
Score = 38.9 bits (89), Expect = 0.001
Identities = 36/298 (12%), Positives = 93/298 (31%), Gaps = 35/298 (11%)
Query: 261 TVLDLSHNNHQDINFVQESMSQKLT-NLIVLDLSHNKLSE-LPDFLNFKVLKELDISHNN 318
LDL+ N + + L+ +I + + + L + + ++ +D+S++
Sbjct: 3 QTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV 57
Query: 319 FESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKP 378
E L + + + + LV+L++S
Sbjct: 58 IEVSTLHGILSQCSKLQNLS----LEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFA 112
Query: 379 RCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIW----LLNHMEL 434
T ++ ++ + + ++ + T L+ +
Sbjct: 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172
Query: 435 KENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLS 494
+ + +S + QL YL+++ C + I E L
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP------------ETLLE 220
Query: 495 ILYLSSIQELHLSNVQLNCIPEDIGNLI--CLEKLNISHNKVYKL-PESFANLKSLKI 549
+ + +++ L + +P+ L+ L L I+ + + + N K+ +I
Sbjct: 221 LGEIPTLKTLQVF----GIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274
Score = 27.0 bits (58), Expect = 7.5
Identities = 25/214 (11%), Positives = 55/214 (25%), Gaps = 18/214 (8%)
Query: 346 NNFESMPLCLQVHFCKLVKLDISHNQIK---ILHKPRCTHTLQTFSMNHN-IGMKIPEWF 401
+F PL ++ +D+S++ I+ + LQ S+ + I
Sbjct: 32 RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 91
Query: 402 WYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQL 461
L + L + NL V V+ +
Sbjct: 92 A-----KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 146
Query: 462 KYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNL 521
L+ + + + + S+ + + +
Sbjct: 147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN------ 200
Query: 522 ICLEKLNISHNKV--YKLPESFANLKSLKILDVS 553
L+ L++S + + +LK L V
Sbjct: 201 -YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 40.8 bits (94), Expect = 2e-04
Identities = 25/192 (13%), Positives = 56/192 (29%), Gaps = 12/192 (6%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
L L N D + L + L + + L +++ S+
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTD-----LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSN 71
Query: 317 NNFESMP-LCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
N + L + + +DI+ + L + ++ +D N +
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
++T+ S + F + LK L L ++ ++
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLA------NLTTLERLDISSNKVS 185
Query: 436 ENGVFSNLISLH 447
+ V + L +L
Sbjct: 186 DISVLAKLTNLE 197
Score = 32.3 bits (72), Expect = 0.093
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 282 QKLTNLIVLDLSHNKLSELPDFLNFKVLKEL 312
LT L LD+S NK+S++ L+ L
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESL 199
Score = 29.6 bits (65), Expect = 0.80
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 538 PESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTT 572
+ ANL +L+ LD+S NK++ + L+NL +
Sbjct: 165 LKPLANLTTLERLDISSNKVSDIS-VLAKLTNLES 198
Score = 28.1 bits (61), Expect = 2.7
Identities = 19/191 (9%), Positives = 50/191 (26%), Gaps = 26/191 (13%)
Query: 284 LTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDI 343
L + L +++ + + L +S+ ++ I +
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI-------NF 69
Query: 344 SHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWY 403
S+N + + + ++ + T T N + +
Sbjct: 70 SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129
Query: 404 QEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKY 463
L L +S + LN + ++++ L
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQ-------------------VTDLKPLAN 170
Query: 464 LKNIKYLNCSN 474
L ++ L+ S+
Sbjct: 171 LTTLERLDISS 181
Score = 27.7 bits (60), Expect = 3.7
Identities = 17/97 (17%), Positives = 32/97 (32%)
Query: 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTN 286
N + + ++ + +L+ S LT+
Sbjct: 92 NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 151
Query: 287 LIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMP 323
L L+ S N++++L N L+ LDIS N +
Sbjct: 152 LQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS 188
Score = 27.3 bits (59), Expect = 4.4
Identities = 24/183 (13%), Positives = 52/183 (28%), Gaps = 40/183 (21%)
Query: 239 VNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
+ N L +T L + I+ V+ L NL ++ S+N+L+
Sbjct: 21 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVE-----YLNNLTQINFSNNQLT 75
Query: 299 ELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVH 358
++ N L ++ +++N + + + ++Q L
Sbjct: 76 DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 135
Query: 359 FC-----------------------------------KLVKLDISHNQIKILHKPRCTHT 383
L +LDIS N++ +
Sbjct: 136 SSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 195
Query: 384 LQT 386
L++
Sbjct: 196 LES 198
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 40.3 bits (92), Expect = 3e-04
Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 16/231 (6%)
Query: 342 DISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHK---PRCTHTLQTFSMNHNIGMKIP 398
+ +P L ++L +++++ K + +++ I
Sbjct: 14 LCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 70
Query: 399 EWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNV 458
+ + + + + + + + + L + + V
Sbjct: 71 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 130
Query: 459 SQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSS------IQELHLSNVQLN 512
+ N + + L + + ++ + + N L
Sbjct: 131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE 190
Query: 513 CIPEDI-GNLICLEKLNISHNKVYKLPES-FANLKSLKILDVSYNKLTMLP 561
+P D+ L+IS +++ LP NLK L+ L LP
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239
Score = 37.2 bits (84), Expect = 0.003
Identities = 26/227 (11%), Positives = 52/227 (22%), Gaps = 20/227 (8%)
Query: 285 TNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDIS 344
N I L KL + F +L+ + + ++ + ++P H
Sbjct: 29 RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87
Query: 345 HNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQ 404
NN + + L L IS+ I + + +
Sbjct: 88 ANNLLYINPEAFQNLPNLQYLLISNTGI-------KHLPDVHKIHSLQKVLLDIQDNINI 140
Query: 405 EFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYL 464
+ S + L + + N
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200
Query: 465 KNIKYLNCSNDIDHRKSQDFVNVLWELPLSILY-LSSIQELHLSNVQ 510
L+ S + LP L L ++ N++
Sbjct: 201 SGPVILDISR-----------TRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 34.5 bits (77), Expect = 0.025
Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 14/237 (5%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ + + N L + +Q+ +L +++S N +
Sbjct: 12 VFLCQESKVTEIPSDLP---RNAIELRFVLTK---LRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 298 SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
E+ + F L +L + L + + ++P + +
Sbjct: 66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125
Query: 358 HFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSST 417
K++ + I + + + I E + S
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185
Query: 418 DPFFEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ E LP + + S + L + T L+ LK ++ + N
Sbjct: 186 NNNLEELPNDVFHGA--------SGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234
Score = 33.0 bits (73), Expect = 0.068
Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 263 LDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPD--FLNFKVLKELDISHNNFE 320
+L+ +++ ++ + + + ++LD+S ++ LP N K L+ N +
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236
Query: 321 SMP 323
+P
Sbjct: 237 KLP 239
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 40.0 bits (92), Expect = 3e-04
Identities = 18/218 (8%), Positives = 56/218 (25%), Gaps = 31/218 (14%)
Query: 257 LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISH 316
+L + D +L ++ + +++ + + + +L ++
Sbjct: 23 FAETIKDNLKKKSVTDA-----VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 77
Query: 317 NNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILH 376
N + + + ++ + + L
Sbjct: 78 NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH---------------- 121
Query: 377 KPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKE 436
+ + + L L T ++ ++ L
Sbjct: 122 --NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL-- 177
Query: 437 NGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSN 474
+ L +L++ +S++ L LKN+ L +
Sbjct: 178 ----TKLQNLYLSKNH--ISDLRALAGLKNLDVLELFS 209
Score = 39.6 bits (91), Expect = 5e-04
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 4/146 (2%)
Query: 170 LVQLECLHIDNNKAQEYIVSMNVDRTPGFKLQNNDNDQNTKVTNAMDIAMELIDTELNCC 229
L + L ++ NK + N+ L N + + + + ++
Sbjct: 67 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 126
Query: 230 NKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIV 289
+ + + N + + L + +D LT L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLT----KLDTLSLEDNQISDIVPLAGLTKLQN 182
Query: 290 LDLSHNKLSELPDFLNFKVLKELDIS 315
L LS N +S+L K L L++
Sbjct: 183 LYLSKNHISDLRALAGLKNLDVLELF 208
Score = 38.1 bits (87), Expect = 0.001
Identities = 22/177 (12%), Positives = 50/177 (28%), Gaps = 19/177 (10%)
Query: 240 NLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
NL + + +L ++ + ++++ + + + Q L N+ L L+ NKL++
Sbjct: 30 NLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQGI-----QYLPNVTKLFLNGNKLTD 82
Query: 300 LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHF 359
+ N L F + + S S + + L
Sbjct: 83 IKPLAN------LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136
Query: 360 CKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSS 416
+ + L +I + L+ L +S
Sbjct: 137 E------SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 187
Score = 36.9 bits (84), Expect = 0.003
Identities = 28/193 (14%), Positives = 66/193 (34%), Gaps = 9/193 (4%)
Query: 361 KLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPF 420
+ +K ++ + +++ N++ I Q + +L ++
Sbjct: 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNS---DIKSVQGIQYLPNVTKLFLNGNK-- 79
Query: 421 FEHLPIWLLNHMELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRK 480
I L +++ + + + S I +N + +
Sbjct: 80 --LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137
Query: 481 SQDFVNVLWELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPES 540
S N + L+ + L L + Q++ I + L L+ L +S N + L +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLR-A 195
Query: 541 FANLKSLKILDVS 553
A LK+L +L++
Sbjct: 196 LAGLKNLDVLELF 208
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 40.0 bits (91), Expect = 7e-04
Identities = 21/205 (10%), Positives = 44/205 (21%), Gaps = 7/205 (3%)
Query: 235 DIFTVNLSHQDINFVQ-ESMSQKLTNLTVLDLSHNNHQDINFVQ-ESMSQKLTNLIVLDL 292
DI ++++ ++++ + + L V+ L + S + L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 293 SHNKLSE-----LPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNN 347
N+L + + L K +S N V Q +N
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 348 FESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFL 407
+ L S+ +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 408 CLKELNMSSTDPFFEHLPIWLLNHM 432
+ L
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLES 207
Score = 34.6 bits (77), Expect = 0.035
Identities = 34/370 (9%), Positives = 73/370 (19%), Gaps = 30/370 (8%)
Query: 227 NCCNKQYHDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNN---------------HQ 271
++ + L ++ V + + + L L +
Sbjct: 53 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 112
Query: 272 DINFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLKELDISHNNFESMPLCLQVHFY 331
+ + S + + L + L + + L + F
Sbjct: 113 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 172
Query: 332 VHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL-------HKPRCTHTL 384
+ ++ L K
Sbjct: 173 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 232
Query: 385 QTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLI 444
+ ++GM L+ L + + + S
Sbjct: 233 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 292
Query: 445 SLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQEL 504
+ A ++ + S F +V +L L
Sbjct: 293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNR 351
Query: 505 HLSNVQLNCIPEDIGNLICLEKLNISHNK-----VYKLPESFANLKSLKILDVSYNKLTM 559
L L ++ L + SL+ LD+S N L
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG- 410
Query: 560 LPDGFVMLSN 569
G + L
Sbjct: 411 -DAGILQLVE 419
Score = 33.8 bits (75), Expect = 0.053
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 500 SIQELHLSNVQLN--CIPEDIGNLICLEKLNISHNK-----VYKLPESFANLKSLKILDV 552
IQ L + +L+ E + L + + + + + +L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 553 SYNKLT 558
N+L
Sbjct: 63 RSNELG 68
Score = 33.0 bits (73), Expect = 0.10
Identities = 26/249 (10%), Positives = 61/249 (24%), Gaps = 6/249 (2%)
Query: 316 HNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKIL 375
+S + + D+ L + L
Sbjct: 191 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 250
Query: 376 HKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELK 435
P + + + + + L +
Sbjct: 251 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 310
Query: 436 ENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSI 495
+ S + A S L + + L SN+ + P S+
Sbjct: 311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 370
Query: 496 LYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNK-----VYKLPESFANLKS-LKI 549
L + + + +S+ + + + L +L++S+N + +L ES L+
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 550 LDVSYNKLT 558
L + +
Sbjct: 431 LVLYDIYWS 439
Score = 32.6 bits (72), Expect = 0.15
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 252 SMSQKLTNLTVLDLSHNN--HQDINFVQESMSQKLTNLIVLDLSHNKLSE 299
+ +L LDLS+N I + ES+ Q L L L SE
Sbjct: 391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 38.9 bits (89), Expect = 8e-04
Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 6/178 (3%)
Query: 246 INFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLSELPDFLN 305
I +E S T ++L H I + ++S L L LS N + ++
Sbjct: 11 IRIFEERKSVVATEAEKVEL-HGMIPPIEKMDATLST-LKACKHLALSTNNIEKISSLSG 68
Query: 306 FKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKL 365
+ L+ L + N + + V + + S + E + ++
Sbjct: 69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT 128
Query: 366 DISHNQIKILHKPRCTHTLQTFSMNHNIGMKIPEWFWYQEFLC----LKELNMSSTDP 419
+ L + ++ + E + LK+L+ D
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV 186
Score = 34.7 bits (78), Expect = 0.020
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 526 KLNISHNKVYKLPESFANLKSLKILDVSYNKLTMLPDGFVMLSNLTTFYAQRKYWMF 582
+L+ + K+ + + LK+ K L +S N + + + NL R
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK 84
Score = 26.2 bits (56), Expect = 9.5
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 490 ELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVY 535
++ ++ L + + L LS + I + + L L++ N +
Sbjct: 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK 83
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 33.6 bits (76), Expect = 0.030
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 489 WELPLSILYLSSIQELHLSNVQLNCIPEDIGNLICLEKLNISHNKVYKLPESFANLKSLK 548
+L +S Y S Q L L ++ D+ LN + L N+ L
Sbjct: 12 LKLIMSKRYDGSQQALDLKGLR---SDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELL 68
Query: 549 ILDVSYNKLTM---LPDGFVMLSNLTTFY 574
L++S N+L + NL
Sbjct: 69 SLNLSNNRLYRLDDMSSIVQKAPNLKILN 97
Score = 33.3 bits (75), Expect = 0.039
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 234 HDIFTVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLS 293
+I V + + + + L L+LS+N ++ + + QK NL +L+LS
Sbjct: 41 QNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLS 99
Query: 294 HNKLSELPD--FLNFKVLKELDISHNNF 319
N+L + + L+EL + N+
Sbjct: 100 GNELKSERELDKIKGLKLEELWLDGNSL 127
Score = 28.2 bits (62), Expect = 1.6
Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 12/135 (8%)
Query: 240 NLSHQDINFVQESMSQK-LTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKLS 298
L + + ++ MS++ + LDL D + V +VL+ + +
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLK-GLRSDPDLVA------QNIDVVLNRRSSMAA 55
Query: 299 ELPD-FLNFKVLKELDISHNNFESMPLCLQVHFYVHIPYKHSQSDISHNNFESMPLCLQV 357
L N L L++S+N + + V ++S N +S ++
Sbjct: 56 TLRIIEENIPELLSLNLSNNRLYRLD---DMSSIVQKAPNLKILNLSGNELKSERELDKI 112
Query: 358 HFCKLVKLDISHNQI 372
KL +L + N +
Sbjct: 113 KGLKLEELWLDGNSL 127
Score = 26.3 bits (57), Expect = 7.1
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 21/128 (16%)
Query: 433 ELKENGVFSNLISLHMQNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELP 492
+L + L + AA + + + + + LN SN+ +R ++
Sbjct: 37 DLVAQNIDVVLNRRS--SMAATLRIIEE--NIPELLSLNLSNNRLYRLD--------DMS 84
Query: 493 LSILYLSSIQELHLSNVQLNCIPE-DIGNLICLEKLNISHNKVYKLPES--------FAN 543
+ +++ L+LS +L E D + LE+L + N +
Sbjct: 85 SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER 144
Query: 544 LKSLKILD 551
L LD
Sbjct: 145 FPKLLRLD 152
Score = 26.3 bits (57), Expect = 8.5
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 238 TVNLSHQDINFVQE--SMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHN 295
++NLS+ + + + S+ QK NL +L+LS N + +E K L L L N
Sbjct: 69 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE---RELDKIKGLKLEELWLDGN 125
Query: 296 KLSELP 301
LS+
Sbjct: 126 SLSDTF 131
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 29.5 bits (64), Expect = 0.99
Identities = 19/255 (7%), Positives = 72/255 (28%), Gaps = 7/255 (2%)
Query: 274 NFVQESMSQKLTNLIVLDLSHNKLSELPDFLNFKVLK-----ELDISHNNFESMPLCLQV 328
+ + + + + LD+ + +S + +F ++ + + + + L +
Sbjct: 15 HLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL 74
Query: 329 HFYVHIPYKHSQSDISHNNFESMPLCLQVHFCKLVKLDISHNQIKILHKPRCTHTLQTFS 388
L + + K K I + ++ + + S
Sbjct: 75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHS 134
Query: 389 MNHNIGMKIPEWFWYQEFLCLKELNMSSTDPFFEHLPIWLLNHMELKENGVFSNLISLHM 448
+ P W + L + + + ++ + +
Sbjct: 135 NLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSS 194
Query: 449 QNTAAVMSNVSQLKYLKNIKYLNCSNDIDHRKSQDFVNVLWELPLSILYLSSIQELHLSN 508
+ ++ N+ ++ +D + L+ + + + +++ N
Sbjct: 195 RAITQLILNL--VEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGN 252
Query: 509 VQLNCIPEDIGNLIC 523
+ E++G ++
Sbjct: 253 PENEASIEELGEMLL 267
>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 323
Score = 27.8 bits (62), Expect = 4.0
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 127 TNSGTQ-DTITNNSVEMDENTVKTEALSTRTFCD------HELQ--SIEDDILVQLECLH 177
NS DT+ +V + + E C +L +I +L EC
Sbjct: 10 NNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLGKCNIAGWLLGNPECDP 69
Query: 178 IDNNKAQEYIV 188
+ ++ YIV
Sbjct: 70 LLPVRSWSYIV 80
>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 321
Score = 26.6 bits (59), Expect = 8.0
Identities = 17/71 (23%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 127 TNSGTQ-DTITNNSVEMDENTVKTEALSTRTFCDHELQ--------SIEDDILVQLECLH 177
NS Q DTI +V + E CD S+ +L C
Sbjct: 10 NNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLNGVKPLILRDCSVAGWLLGNPMCDE 69
Query: 178 IDNNKAQEYIV 188
N YIV
Sbjct: 70 FLNVPEWSYIV 80
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 25.9 bits (55), Expect = 8.9
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 238 TVNLSHQDINFVQESMSQKLTNLTVLDLSHNNHQDINFVQESMSQKLTNLIVLDLSHNKL 297
+ + + NLT L + + H + ++ + L L L + + L
Sbjct: 12 GLRCTRDGALDSLHHL-PGAENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGL 68
Query: 298 --SELPDFLNFKVLKELDISHNNFESMPLCLQVHFYVHIPY 336
F L L++S N ES+ +
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.404
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,146,181
Number of extensions: 98797
Number of successful extensions: 574
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 112
Length of query: 594
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 504
Effective length of database: 1,171,896
Effective search space: 590635584
Effective search space used: 590635584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)