BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6453
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZHZ4|HAKAI_CHICK E3 ubiquitin-protein ligase Hakai OS=Gallus gallus GN=CBLL1 PE=2
SV=1
Length = 493
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 9/105 (8%)
Query: 79 WDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCA--QAPRSPPTCLRCG 136
WD+ ++L+GEK P+ H C+KC PI +YGRMIPC+HVFC CA + C C
Sbjct: 91 WDYKINLLGEKDDTPV-HFCDKCGLPIKMYGRMIPCKHVFCYDCAILHEKKGDKMCPGCN 149
Query: 137 EGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRH 181
E V R+E G++FMC+ GCKRTYLSQRDL A H
Sbjct: 150 EPVQRIEQCVRGSLFMCS------IVQGCKRTYLSQRDLQAHINH 188
>sp|Q75N03|HAKAI_HUMAN E3 ubiquitin-protein ligase Hakai OS=Homo sapiens GN=CBLL1 PE=1
SV=1
Length = 491
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 77 LRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCA--QAPRSPPTCLR 134
L WD ++++GEK P+ H C+KC PI IYGRMIPC+HVFC CA + C
Sbjct: 89 LFWDFQINILGEKDDTPV-HFCDKCGLPIKIYGRMIPCKHVFCYDCAILHEKKGDKMCPG 147
Query: 135 CGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGPHPRLHRKDHR 194
C + V R+E G++FMC+ GCKRTYLSQRDL A H R R
Sbjct: 148 CSDPVQRIEQCTRGSLFMCS------IVQGCKRTYLSQRDLQAHINH-----RHMRAGKP 196
Query: 195 LFRALVSGICPLVV 208
+ RA + + P +
Sbjct: 197 VTRASLENVHPPIA 210
>sp|Q4R7I8|HAKAI_MACFA E3 ubiquitin-protein ligase Hakai OS=Macaca fascicularis GN=CBLL1
PE=2 SV=1
Length = 490
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 77 LRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCA--QAPRSPPTCLR 134
L WD ++++GEK P+ H C+KC PI IYGRMIPC+HVFC CA + C
Sbjct: 88 LFWDFQINILGEKDDTPV-HFCDKCGLPIKIYGRMIPCKHVFCYDCAILHEKKGDKMCPG 146
Query: 135 CGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGPHPRLHRKDHR 194
C + V R+E G++FMC+ GCKRTYLSQRDL A H R R
Sbjct: 147 CSDPVQRIEQCTRGSLFMCS------IVQGCKRTYLSQRDLQAHINH-----RHMRAGKP 195
Query: 195 LFRALVSGICPLVV 208
+ RA + + P +
Sbjct: 196 VTRASLENVHPPIA 209
>sp|Q9JIY2|HAKAI_MOUSE E3 ubiquitin-protein ligase Hakai OS=Mus musculus GN=Cbll1 PE=1
SV=1
Length = 491
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 77 LRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCA--QAPRSPPTCLR 134
L WD ++++GEK P+ H C+KC PI +YGRMIPC+HVFC CA + C
Sbjct: 89 LFWDFKINILGEKDDTPV-HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPG 147
Query: 135 CGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGPHPRLHRKDHR 194
C + V R+E G++FMC+ GCKRTYLSQRDL A H R R
Sbjct: 148 CSDPVQRIEQCTRGSLFMCS------IVQGCKRTYLSQRDLQAHINH-----RHMRAGKP 196
Query: 195 LFRALVSGICPLVV 208
+ RA + + P +
Sbjct: 197 VTRASLENVHPPIA 210
>sp|Q4V7X9|HAKAI_XENLA E3 ubiquitin-protein ligase Hakai OS=Xenopus laevis GN=cbll1 PE=2
SV=1
Length = 496
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 65/121 (53%), Gaps = 23/121 (19%)
Query: 77 LRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCA--QAPRSPPTC-- 132
L WD ++LIGEK P+ H C+KC PI IYGRMIPC+HVFC CA ++ C
Sbjct: 84 LFWDFKLNLIGEKEDTPV-HFCDKCGLPIKIYGRMIPCKHVFCYDCALMHEKKADKLCPG 142
Query: 133 ------------LRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGR 180
+ C + V R+E G++FMC+ GCKRTYLSQRDL A
Sbjct: 143 TLVEDSTDTFKRMSCNDPVQRIEQCARGSLFMCS------IVQGCKRTYLSQRDLQAHIN 196
Query: 181 H 181
H
Sbjct: 197 H 197
>sp|Q4R361|ZN645_MACFA E3 ubiquitin-protein ligase ZNF645 OS=Macaca fascicularis GN=ZNF645
PE=2 SV=1
Length = 422
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 61/102 (59%), Gaps = 10/102 (9%)
Query: 79 W-DHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRS--PPTCLRC 135
W D +++IGEK +PI H C+KC+ PI IYGR+IPC+H FC +CA C RC
Sbjct: 35 WGDIKINIIGEKDDSPI-HFCDKCDLPIKIYGRIIPCKHAFCYNCANLYDKIGYKICPRC 93
Query: 136 GEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMA 177
V R+E G+VFMC+ GCKRTYLSQ+ L A
Sbjct: 94 SYPVLRIEEHKRGSVFMCS------VVQGCKRTYLSQKSLQA 129
>sp|Q8N7E2|ZN645_HUMAN E3 ubiquitin-protein ligase ZNF645 OS=Homo sapiens GN=ZNF645 PE=2
SV=1
Length = 425
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 61/109 (55%), Gaps = 10/109 (9%)
Query: 72 KPMLSLRW-DHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSP- 129
K + RW D +++IGEK PI H C+KC+ PI IYGR+IPC+H FC CA
Sbjct: 31 KKIPGYRWGDIKINIIGEKDDLPI-HFCDKCDLPIKIYGRIIPCKHAFCYHCANLYDKVG 89
Query: 130 -PTCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMA 177
C RC V R+E G+VFMC+ CKRTYLSQ+ L A
Sbjct: 90 YKVCPRCRYPVLRIEAHKRGSVFMCS------IVQQCKRTYLSQKSLQA 132
>sp|Q8IS11|GEFO_DICDI Ras guanine nucleotide exchange factor O OS=Dictyostelium
discoideum GN=gefO PE=2 SV=1
Length = 944
Score = 35.8 bits (81), Expect = 0.37, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 97 TCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRC 135
TC C+ +IPC H FCL C S C++C
Sbjct: 15 TCGICQNLFKDPNTLIPCGHAFCLDCLTTNASIKNCIQC 53
>sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=alaS PE=2 SV=1
Length = 946
Score = 35.4 bits (80), Expect = 0.42, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 114 CRHVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQR 173
C H F S A P PT L G+ + +P LG V + A KR SQ+
Sbjct: 18 CEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQV------NPKSEQAKLKRAVNSQK 71
Query: 174 DLMALGRH 181
+ A G+H
Sbjct: 72 CIRAGGKH 79
>sp|Q8Y8D4|DLTA_LISMO D-alanine--poly(phosphoribitol) ligase subunit 1 OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=dltA PE=3 SV=1
Length = 510
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 102 EKPIMIYGRMIPCRHVFCLSCAQAPRS--PPTCLRCGEGVTRVEPTGLGTVFMCTHGGAR 159
EKPI++YG M P V L ++ R+ P E + +++ ++F+CT
Sbjct: 54 EKPIIVYGHMSPLMLVAFLGSIKSGRAYVPVDVSMPVERIEQIKKAADPSMFICTEELPN 113
Query: 160 HST-AGCKRTYLSQRDLM-ALGRHLGPHP 186
+ T GC L+Q LM AL +H G P
Sbjct: 114 NLTITGC--PVLTQDQLMDALEKHFGEVP 140
>sp|C1L1P5|DLTA_LISMC D-alanine--poly(phosphoribitol) ligase subunit 1 OS=Listeria
monocytogenes serotype 4b (strain CLIP80459) GN=dltA
PE=3 SV=1
Length = 510
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 102 EKPIMIYGRMIPCRHVFCLSCAQAPRS--PPTCLRCGEGVTRVEPTGLGTVFMCTHGGAR 159
EKPI++YG M P V L ++ R+ P E + +++ ++F+CT
Sbjct: 54 EKPIIVYGHMSPLMLVAFLGSIKSGRAYVPVDVSMPVERIEQIKKAADPSLFICTEELPS 113
Query: 160 HST-AGCKRTYLSQRDLM-ALGRHLGPHP 186
+ T GC L+Q LM AL +H G P
Sbjct: 114 NLTITGC--PVLTQDQLMDALEKHFGEVP 140
>sp|Q721J2|DLTA_LISMF D-alanine--poly(phosphoribitol) ligase subunit 1 OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=dltA PE=3
SV=1
Length = 510
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 102 EKPIMIYGRMIPCRHVFCLSCAQAPRS--PPTCLRCGEGVTRVEPTGLGTVFMCTHGGAR 159
EKPI++YG M P V L ++ R+ P E + +++ ++F+CT
Sbjct: 54 EKPIIVYGHMSPLMLVAFLGSIKSGRAYVPVDVSMPVERIEQIKKAADPSLFICTEELPS 113
Query: 160 HST-AGCKRTYLSQRDLM-ALGRHLGPHP 186
+ T GC L+Q LM AL +H G P
Sbjct: 114 NLTITGC--PVLTQDQLMDALEKHFGEVP 140
>sp|Q1PRL4|LIN41_CHICK E3 ubiquitin-protein ligase TRIM71 OS=Gallus gallus GN=TRIM71 PE=2
SV=1
Length = 876
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 111 MIPCRHVFCLSCAQAPRSPPT-------CLRCGEGVTRVEPTGL 147
++PC H FC C +A R P C C + V EP+G+
Sbjct: 58 VLPCLHAFCRQCLEAQRHPAAGDALKLRCPICDQKVVISEPSGM 101
>sp|B8DEG2|DLTA_LISMH D-alanine--poly(phosphoribitol) ligase subunit 1 OS=Listeria
monocytogenes serotype 4a (strain HCC23) GN=dltA PE=3
SV=1
Length = 510
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 102 EKPIMIYGRMIPCRHVFCLSCAQAPRS--PPTCLRCGEGVTRVEPTGLGTVFMCTHGGAR 159
EKPI++YG M P + L ++ R+ P E + +++ ++F+CT
Sbjct: 54 EKPIIVYGHMSPLMLIAFLGSIKSGRAYVPVDVSMPVERIEQIKKAADPSMFICTEELPS 113
Query: 160 HST-AGCKRTYLSQRDLM-ALGRHLGPHP 186
+ T GC LSQ LM AL +H P
Sbjct: 114 NLTITGC--PVLSQEQLMDALEKHFDEVP 140
>sp|A3QFJ5|DNLJ_SHELP DNA ligase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
GN=ligA PE=3 SV=1
Length = 669
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 52 EADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRM 111
+ +I+QLE F G P+ L+ V + G V N +H ++ + ++ G
Sbjct: 318 QEEITQLEGVDFQVGRTGAVTPVARLQ---PVFVGGVTVSNATLHNADEIARLGVMIGDS 374
Query: 112 IPCR-------HVFCL------SCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHG 156
+ R V + S AQA + PP C CG V RVE V CT G
Sbjct: 375 VIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPPQCPVCGSDVERVEGEA---VARCTGG 429
>sp|D3ZX08|SYAM_RAT Alanine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Aars2
PE=2 SV=1
Length = 985
Score = 32.7 bits (73), Expect = 3.0, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 116 HVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDL 175
H S + PR P+ L G+ + +P LGTV R AG +R SQ+ +
Sbjct: 51 HRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTV------DPRSEMAGFRRVANSQKCV 104
Query: 176 MALGRH 181
A GRH
Sbjct: 105 RAGGRH 110
>sp|Q14CH7|SYAM_MOUSE Alanine--tRNA ligase, mitochondrial OS=Mus musculus GN=Aars2 PE=2
SV=1
Length = 980
Score = 32.3 bits (72), Expect = 3.6, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 116 HVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDL 175
H S PR P+ L G+ + +P LGTV R AG +R SQ+ +
Sbjct: 51 HRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTV------DPRSEMAGFRRVVNSQKCV 104
Query: 176 MALGRH 181
A GRH
Sbjct: 105 RAGGRH 110
>sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24
PE=3 SV=1
Length = 332
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 91 LNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCA-QAPRSPPTCLRCGEGVTRV 142
L I C C+KP + C H FC SCA Q R P+C CG G V
Sbjct: 234 LENIPFACIICKKPYQ-NPIVTKCGHYFCESCALQRYRKNPSCAACGAGTGGV 285
>sp|Q4WUA0|CWC24_ASPFU Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24
PE=3 SV=1
Length = 339
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 111 MIPCRHVFCLSCA-QAPRSPPTCLRCGEGV 139
+ C H FC SCA Q R P+C CG G
Sbjct: 265 VTKCGHYFCESCALQRYRKNPSCAACGAGT 294
>sp|Q06436|MAG2_YEAST RING-finger protein MAG2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MAG2 PE=1 SV=1
Length = 670
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 88 EKVLNPII---HTCEKCEKPIMIYGRMIPCRHVFCLSC 122
EK+L I+ C C + RM+ C H+FCLSC
Sbjct: 182 EKILRVIVPKGQNCSICLSEEPVAPRMVTCGHIFCLSC 219
>sp|Q9CA86|PEX2_ARATH Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana GN=PEX2
PE=1 SV=1
Length = 333
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 97 TCEKCEKPIMIYGRMIPCRHVFCLSCAQ---APRSPPTCLRCGEGVTRVEPTGLGT 149
TC C+ I +PC+H +C C + A + CLRC E V ++ G+ +
Sbjct: 276 TCPICQVDPAIPFIALPCQHRYCYYCIRTRCASAASFRCLRCNEPVVAIQREGVSS 331
>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei
brucei GN=ESAG8 PE=2 SV=1
Length = 630
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 111 MIPCRHVFCLSCAQAPRSPPTCLR 134
++PCRHVFC +C P+C R
Sbjct: 24 LLPCRHVFCTACVVQRWRCPSCQR 47
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,636,490
Number of Sequences: 539616
Number of extensions: 5241185
Number of successful extensions: 11424
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 11382
Number of HSP's gapped (non-prelim): 55
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)