Query psy6453
Match_columns 282
No_of_seqs 43 out of 45
Neff 2.2
Searched_HMMs 46136
Date Fri Aug 16 18:16:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2932|consensus 100.0 1.1E-61 2.4E-66 451.7 6.2 165 47-228 46-210 (389)
2 PF13920 zf-C3HC4_3: Zinc fing 97.5 2.8E-05 6.2E-10 53.2 0.1 45 97-142 4-50 (50)
3 PF00097 zf-C3HC4: Zinc finger 97.3 6.5E-05 1.4E-09 48.9 0.3 38 98-135 1-41 (41)
4 cd00162 RING RING-finger (Real 97.1 0.00013 2.9E-09 45.4 0.5 42 98-139 2-45 (45)
5 KOG2879|consensus 97.0 0.00026 5.6E-09 66.8 0.9 51 96-146 240-293 (298)
6 PHA02929 N1R/p28-like protein; 96.8 0.00053 1.2E-08 62.3 1.7 50 96-145 175-232 (238)
7 PF13923 zf-C3HC4_2: Zinc fing 96.8 0.00034 7.4E-09 45.9 0.2 38 98-135 1-39 (39)
8 PF14634 zf-RING_5: zinc-RING 96.2 0.0018 3.9E-08 43.8 1.0 39 98-136 2-43 (44)
9 smart00184 RING Ring finger. E 96.0 0.0016 3.4E-08 39.1 -0.1 27 109-135 11-39 (39)
10 KOG2164|consensus 96.0 0.0015 3.3E-08 65.3 -0.4 59 77-141 173-237 (513)
11 PF13639 zf-RING_2: Ring finge 95.7 0.0011 2.3E-08 44.2 -2.0 40 97-136 2-44 (44)
12 PLN03208 E3 ubiquitin-protein 95.3 0.0066 1.4E-07 54.3 0.9 44 96-140 19-79 (193)
13 smart00504 Ubox Modified RING 95.1 0.0052 1.1E-07 42.4 -0.3 44 96-140 2-46 (63)
14 TIGR00599 rad18 DNA repair pro 94.5 0.011 2.4E-07 57.3 0.3 46 95-141 26-72 (397)
15 PHA02926 zinc finger-like prot 93.6 0.018 3.8E-07 53.4 -0.2 50 96-145 171-235 (242)
16 KOG0978|consensus 93.6 0.017 3.6E-07 59.9 -0.5 43 95-138 643-687 (698)
17 KOG0320|consensus 93.3 0.019 4E-07 51.7 -0.7 46 95-140 131-178 (187)
18 TIGR00570 cdk7 CDK-activating 93.1 0.035 7.6E-07 52.7 0.8 47 97-143 5-57 (309)
19 PF12874 zf-met: Zinc-finger o 92.9 0.055 1.2E-06 32.0 1.2 17 164-180 5-21 (25)
20 PF15227 zf-C3HC4_4: zinc fing 92.8 0.039 8.4E-07 37.7 0.5 16 110-125 12-27 (42)
21 PF00096 zf-C2H2: Zinc finger, 92.6 0.07 1.5E-06 31.0 1.3 18 164-181 5-22 (23)
22 KOG0824|consensus 92.5 0.046 9.9E-07 52.5 0.7 31 110-140 21-53 (324)
23 KOG4739|consensus 91.7 0.083 1.8E-06 48.6 1.4 47 98-146 6-53 (233)
24 COG5189 SFP1 Putative transcri 91.6 0.12 2.5E-06 50.8 2.3 30 148-184 347-376 (423)
25 PF13894 zf-C2H2_4: C2H2-type 91.5 0.15 3.3E-06 28.6 1.8 23 151-182 1-23 (24)
26 KOG0317|consensus 91.3 0.054 1.2E-06 51.4 -0.3 60 76-141 225-285 (293)
27 KOG2177|consensus 90.6 0.057 1.2E-06 42.6 -0.7 41 95-136 13-54 (386)
28 PF13912 zf-C2H2_6: C2H2-type 90.0 0.23 5E-06 29.8 1.8 25 150-183 1-25 (27)
29 COG5574 PEX10 RING-finger-cont 88.5 0.13 2.8E-06 48.6 -0.2 44 96-140 216-262 (271)
30 PF14835 zf-RING_6: zf-RING of 87.4 0.27 5.8E-06 38.0 1.0 43 96-139 8-50 (65)
31 PF12861 zf-Apc11: Anaphase-pr 86.6 0.37 8.1E-06 38.6 1.5 42 96-140 33-82 (85)
32 PF12678 zf-rbx1: RING-H2 zinc 86.2 0.33 7.2E-06 36.3 0.9 39 98-136 22-73 (73)
33 PF10367 Vps39_2: Vacuolar sor 85.2 0.46 1E-05 35.3 1.3 29 96-124 79-108 (109)
34 COG5432 RAD18 RING-finger-cont 84.4 0.3 6.4E-06 47.6 -0.1 73 88-183 19-92 (391)
35 PF12171 zf-C2H2_jaz: Zinc-fin 83.3 0.41 9E-06 29.4 0.3 17 164-180 6-22 (27)
36 PF14447 Prok-RING_4: Prokaryo 83.1 0.61 1.3E-05 35.0 1.1 32 108-140 19-50 (55)
37 PRK14559 putative protein seri 82.9 0.64 1.4E-05 47.7 1.6 39 95-142 15-54 (645)
38 PF04641 Rtf2: Rtf2 RING-finge 82.8 0.92 2E-05 40.8 2.4 47 94-140 112-161 (260)
39 KOG1039|consensus 82.7 0.42 9.1E-06 46.0 0.2 48 95-142 161-223 (344)
40 PF07191 zinc-ribbons_6: zinc- 81.4 0.53 1.2E-05 36.7 0.3 54 97-156 3-56 (70)
41 PF13248 zf-ribbon_3: zinc-rib 79.0 0.91 2E-05 28.4 0.7 21 118-138 4-25 (26)
42 PF13445 zf-RING_UBOX: RING-ty 78.7 0.72 1.6E-05 32.2 0.2 16 110-125 15-30 (43)
43 smart00355 ZnF_C2H2 zinc finge 76.8 1.9 4.2E-05 23.9 1.6 19 164-183 5-23 (26)
44 KOG3362|consensus 76.7 1 2.2E-05 39.9 0.6 20 149-168 128-147 (156)
45 TIGR01206 lysW lysine biosynth 76.3 1.9 4.1E-05 31.9 1.8 32 130-162 3-34 (54)
46 PRK14559 putative protein seri 75.9 2.1 4.7E-05 44.0 2.8 52 96-162 2-53 (645)
47 PF12773 DZR: Double zinc ribb 75.9 2.1 4.5E-05 29.1 1.9 37 95-135 12-49 (50)
48 TIGR00622 ssl1 transcription f 75.0 2.8 6E-05 35.1 2.7 42 96-137 56-111 (112)
49 KOG4628|consensus 74.4 1.5 3.4E-05 42.5 1.3 46 96-141 230-279 (348)
50 KOG1813|consensus 73.2 1.4 3.1E-05 42.5 0.7 43 97-140 243-286 (313)
51 KOG4399|consensus 73.1 0.65 1.4E-05 44.6 -1.6 79 97-178 240-323 (325)
52 KOG1100|consensus 72.7 2.6 5.5E-05 37.7 2.1 41 98-142 161-202 (207)
53 KOG0297|consensus 72.3 2.6 5.6E-05 40.4 2.2 89 83-179 11-109 (391)
54 KOG2807|consensus 72.2 1.1 2.4E-05 44.0 -0.2 42 96-137 331-375 (378)
55 COG4049 Uncharacterized protei 71.9 2.6 5.6E-05 32.7 1.7 47 139-194 6-54 (65)
56 PF07975 C1_4: TFIIH C1-like d 71.2 1.6 3.6E-05 32.0 0.5 29 109-137 22-51 (51)
57 PF12756 zf-C2H2_2: C2H2 type 71.0 4.6 0.0001 29.0 2.8 29 147-184 47-76 (100)
58 KOG3039|consensus 67.3 2.1 4.5E-05 41.0 0.4 87 53-140 172-270 (303)
59 KOG4265|consensus 66.0 1.3 2.9E-05 43.1 -1.1 48 95-143 290-339 (349)
60 PF01927 Mut7-C: Mut7-C RNAse 64.5 4.7 0.0001 33.4 2.0 32 129-160 91-134 (147)
61 PRK14890 putative Zn-ribbon RN 64.2 4.3 9.3E-05 31.0 1.5 47 95-158 7-56 (59)
62 PF10235 Cript: Microtubule-as 63.2 3.4 7.3E-05 33.5 0.9 54 85-147 31-87 (90)
63 PHA00616 hypothetical protein 61.5 3.4 7.4E-05 29.7 0.6 20 164-183 6-25 (44)
64 KOG0823|consensus 60.1 3.5 7.6E-05 38.3 0.5 33 113-145 64-100 (230)
65 PF14369 zf-RING_3: zinc-finge 59.6 7 0.00015 26.3 1.8 22 117-138 3-30 (35)
66 PF05605 zf-Di19: Drought indu 59.5 6.7 0.00015 27.5 1.8 18 165-183 8-25 (54)
67 KOG2660|consensus 59.2 1.6 3.5E-05 42.4 -1.9 44 97-140 17-61 (331)
68 PRK04023 DNA polymerase II lar 58.7 6.3 0.00014 43.5 2.2 96 48-161 555-674 (1121)
69 PF13453 zf-TFIIB: Transcripti 57.1 19 0.0004 24.2 3.5 39 131-179 1-39 (41)
70 PF01485 IBR: IBR domain; Int 57.0 4.1 8.8E-05 27.8 0.3 31 95-125 18-57 (64)
71 PF13240 zinc_ribbon_2: zinc-r 56.8 5.9 0.00013 24.6 0.9 12 127-138 11-22 (23)
72 KOG4692|consensus 56.6 3 6.4E-05 41.9 -0.6 44 96-141 424-468 (489)
73 PRK14714 DNA polymerase II lar 56.4 6.5 0.00014 44.1 1.8 52 96-160 668-719 (1337)
74 KOG0287|consensus 56.3 3.6 7.8E-05 41.0 -0.1 45 95-140 23-68 (442)
75 KOG1814|consensus 55.7 3.3 7.1E-05 41.6 -0.5 70 54-125 145-216 (445)
76 PF13913 zf-C2HC_2: zinc-finge 55.2 8.3 0.00018 24.1 1.5 17 164-181 7-23 (25)
77 PF07282 OrfB_Zn_ribbon: Putat 54.9 11 0.00023 27.0 2.2 39 128-180 27-65 (69)
78 PRK12495 hypothetical protein; 54.7 6.5 0.00014 36.6 1.3 29 95-141 42-70 (226)
79 PF14569 zf-UDP: Zinc-binding 54.4 3.9 8.5E-05 32.9 -0.1 47 86-145 19-67 (80)
80 PF08271 TF_Zn_Ribbon: TFIIB z 53.9 15 0.00033 24.8 2.7 27 131-159 2-28 (43)
81 PRK07219 DNA topoisomerase I; 53.2 29 0.00063 36.4 5.8 68 95-169 648-721 (822)
82 PF04981 NMD3: NMD3 family ; 52.9 8.6 0.00019 34.1 1.7 34 129-162 13-47 (236)
83 COG2888 Predicted Zn-ribbon RN 52.8 6.2 0.00013 30.5 0.7 46 96-158 10-58 (61)
84 smart00661 RPOL9 RNA polymeras 52.8 14 0.00029 25.0 2.3 27 131-158 2-28 (52)
85 KOG4275|consensus 52.1 2.5 5.4E-05 41.2 -1.8 45 97-146 302-348 (350)
86 PF14570 zf-RING_4: RING/Ubox 50.6 4.7 0.0001 29.4 -0.2 41 98-138 1-46 (48)
87 PRK09710 lar restriction allev 49.8 24 0.00052 27.4 3.5 33 128-160 5-37 (64)
88 PLN03238 probable histone acet 48.8 18 0.00039 34.8 3.2 29 147-184 45-73 (290)
89 PF02891 zf-MIZ: MIZ/SP-RING z 48.7 5.6 0.00012 28.2 -0.1 43 95-137 2-49 (50)
90 PF06827 zf-FPG_IleRS: Zinc fi 48.4 12 0.00026 23.6 1.4 26 130-156 2-27 (30)
91 PF04434 SWIM: SWIM zinc finge 48.4 13 0.00028 24.2 1.7 32 82-118 2-33 (40)
92 PRK14892 putative transcriptio 48.2 17 0.00038 29.6 2.7 33 130-162 22-54 (99)
93 smart00249 PHD PHD zinc finger 47.5 10 0.00022 23.7 1.0 9 115-123 24-32 (47)
94 KOG1001|consensus 47.4 5.2 0.00011 41.5 -0.5 43 96-140 455-500 (674)
95 KOG3993|consensus 46.7 14 0.00031 37.7 2.3 85 137-238 340-431 (500)
96 smart00064 FYVE Protein presen 46.5 6.4 0.00014 28.0 -0.0 31 95-125 10-43 (68)
97 PRK00420 hypothetical protein; 46.4 15 0.00032 30.7 2.1 27 96-139 24-50 (112)
98 smart00451 ZnF_U1 U1-like zinc 46.3 17 0.00037 22.5 1.9 17 164-180 8-24 (35)
99 PF02318 FYVE_2: FYVE-type zin 46.2 5.1 0.00011 32.2 -0.7 46 95-155 54-99 (118)
100 KOG1812|consensus 45.8 11 0.00025 36.2 1.5 33 93-125 304-340 (384)
101 PRK03564 formate dehydrogenase 45.3 13 0.00029 35.5 1.8 81 74-155 163-257 (309)
102 PLN02436 cellulose synthase A 44.8 13 0.00029 41.0 2.0 45 86-143 46-92 (1094)
103 PRK14811 formamidopyrimidine-D 44.7 24 0.00053 32.2 3.3 32 128-160 234-265 (269)
104 KOG3800|consensus 44.7 9.2 0.0002 36.9 0.7 34 105-140 16-51 (300)
105 PLN02189 cellulose synthase 43.6 14 0.00031 40.7 1.9 45 86-143 44-90 (1040)
106 KOG2462|consensus 41.9 18 0.00038 34.7 2.1 82 93-183 128-240 (279)
107 PLN00104 MYST -like histone ac 41.1 20 0.00044 36.1 2.4 29 147-184 195-223 (450)
108 KOG1941|consensus 40.6 5.8 0.00013 40.2 -1.4 80 95-179 365-453 (518)
109 PF04564 U-box: U-box domain; 40.5 17 0.00037 26.8 1.4 45 95-140 4-50 (73)
110 smart00647 IBR In Between Ring 40.0 28 0.00061 23.7 2.3 15 93-107 16-32 (64)
111 KOG4185|consensus 39.9 11 0.00024 33.6 0.4 43 97-139 5-54 (296)
112 PLN02638 cellulose synthase A 39.4 16 0.00035 40.4 1.6 47 86-145 27-75 (1079)
113 PTZ00064 histone acetyltransfe 39.2 24 0.00052 36.6 2.6 30 146-184 276-305 (552)
114 KOG3002|consensus 39.2 11 0.00024 35.7 0.3 69 95-170 48-121 (299)
115 COG4888 Uncharacterized Zn rib 38.9 27 0.00058 29.4 2.4 32 130-161 23-57 (104)
116 PLN03239 histone acetyltransfe 38.2 27 0.00059 34.3 2.7 26 147-181 103-128 (351)
117 KOG0804|consensus 38.1 15 0.00032 37.6 1.0 69 96-169 176-255 (493)
118 PF08274 PhnA_Zn_Ribbon: PhnA 37.9 20 0.00042 23.9 1.2 25 130-158 3-27 (30)
119 PF14446 Prok-RING_1: Prokaryo 37.7 28 0.0006 26.1 2.1 27 129-160 5-31 (54)
120 PF13408 Zn_ribbon_recom: Reco 37.6 64 0.0014 21.7 3.8 47 131-179 7-53 (58)
121 COG5540 RING-finger-containing 37.3 15 0.00033 36.2 0.9 44 96-139 324-371 (374)
122 COG1645 Uncharacterized Zn-fin 37.3 25 0.00054 30.4 2.1 38 85-143 21-58 (131)
123 PRK14714 DNA polymerase II lar 37.2 20 0.00044 40.4 1.9 41 96-144 680-724 (1337)
124 COG5220 TFB3 Cdk activating ki 37.2 5.1 0.00011 38.5 -2.2 47 97-143 12-67 (314)
125 COG0266 Nei Formamidopyrimidin 36.1 38 0.00083 32.1 3.3 28 128-156 244-271 (273)
126 PRK14873 primosome assembly pr 35.9 33 0.00072 35.5 3.1 19 85-104 374-392 (665)
127 COG1996 RPC10 DNA-directed RNA 35.8 20 0.00043 26.4 1.1 13 147-159 21-33 (49)
128 PF04216 FdhE: Protein involve 35.8 28 0.00061 31.6 2.3 63 96-158 173-246 (290)
129 PHA00626 hypothetical protein 35.3 36 0.00078 26.3 2.5 32 131-162 2-35 (59)
130 KOG0802|consensus 34.6 8 0.00017 38.3 -1.5 43 95-137 291-338 (543)
131 PRK10445 endonuclease VIII; Pr 34.6 38 0.00082 30.8 2.9 28 128-156 234-261 (263)
132 KOG2613|consensus 34.5 9.1 0.0002 39.0 -1.1 42 94-155 14-57 (502)
133 TIGR01562 FdhE formate dehydro 34.4 43 0.00092 32.0 3.3 80 75-155 161-257 (305)
134 PF01396 zf-C4_Topoisom: Topoi 34.3 67 0.0015 21.8 3.4 34 130-170 2-35 (39)
135 COG5236 Uncharacterized conser 34.2 38 0.00082 34.3 3.1 107 67-183 35-177 (493)
136 TIGR00595 priA primosomal prot 34.0 43 0.00093 33.1 3.4 48 116-170 213-264 (505)
137 KOG1785|consensus 33.6 16 0.00034 37.4 0.4 46 96-145 370-421 (563)
138 PLN02400 cellulose synthase 33.5 29 0.00062 38.6 2.3 48 86-146 46-95 (1085)
139 PF09723 Zn-ribbon_8: Zinc rib 33.1 41 0.00089 22.9 2.3 15 128-142 25-40 (42)
140 smart00132 LIM Zinc-binding do 33.1 36 0.00079 20.6 1.8 27 98-124 2-32 (39)
141 PF03119 DNA_ligase_ZBD: NAD-d 32.8 30 0.00065 22.3 1.5 21 131-154 1-21 (28)
142 PLN02195 cellulose synthase A 32.7 28 0.00062 38.2 2.1 42 86-140 16-59 (977)
143 PF10083 DUF2321: Uncharacteri 32.5 13 0.00027 33.2 -0.4 59 118-183 30-93 (158)
144 KOG2747|consensus 32.4 29 0.00062 34.6 1.9 29 147-184 155-183 (396)
145 PRK07220 DNA topoisomerase I; 32.3 90 0.002 32.6 5.5 59 96-154 590-661 (740)
146 KOG4172|consensus 32.3 6.2 0.00013 30.5 -2.1 33 111-143 22-57 (62)
147 PF05129 Elf1: Transcription e 32.2 34 0.00074 26.7 2.0 34 130-163 23-59 (81)
148 PLN02915 cellulose synthase A 32.2 26 0.00056 38.7 1.7 45 86-143 25-71 (1044)
149 COG1198 PriA Primosomal protei 31.3 55 0.0012 34.7 3.9 39 97-138 446-484 (730)
150 KOG0825|consensus 30.8 23 0.0005 38.9 1.1 52 95-146 123-177 (1134)
151 COG0551 TopA Zn-finger domain 30.7 1.3E+02 0.0029 24.4 5.2 74 91-170 13-96 (140)
152 PRK14810 formamidopyrimidine-D 30.6 48 0.001 30.3 2.9 28 128-156 243-270 (272)
153 KOG1815|consensus 30.5 32 0.0007 33.3 1.9 27 96-122 227-260 (444)
154 PRK04023 DNA polymerase II lar 30.4 41 0.00089 37.5 2.8 62 91-165 590-666 (1121)
155 KOG2231|consensus 30.3 7.5 0.00016 40.8 -2.5 51 105-156 88-146 (669)
156 COG5222 Uncharacterized conser 30.2 16 0.00034 36.3 -0.2 43 96-138 275-319 (427)
157 PRK00398 rpoP DNA-directed RNA 30.0 35 0.00076 23.3 1.5 12 129-140 21-32 (46)
158 PHA00732 hypothetical protein 29.8 34 0.00073 26.5 1.6 18 163-180 5-22 (79)
159 KOG2462|consensus 29.7 37 0.00081 32.6 2.1 43 129-180 130-182 (279)
160 PF11789 zf-Nse: Zinc-finger o 29.6 20 0.00043 26.2 0.3 31 95-125 11-41 (57)
161 TIGR00373 conserved hypothetic 29.6 13 0.00029 31.5 -0.7 11 92-102 106-116 (158)
162 PRK13945 formamidopyrimidine-D 28.1 55 0.0012 30.0 2.9 28 128-156 253-280 (282)
163 KOG2114|consensus 27.9 29 0.00063 37.9 1.2 40 96-137 841-880 (933)
164 KOG1571|consensus 27.8 16 0.00035 36.0 -0.6 51 89-142 299-349 (355)
165 PHA03096 p28-like protein; Pro 27.7 9.8 0.00021 35.8 -2.0 47 96-142 179-239 (284)
166 PF07649 C1_3: C1-like domain; 27.5 30 0.00064 21.8 0.7 27 97-123 2-30 (30)
167 KOG0311|consensus 27.1 12 0.00026 37.2 -1.6 46 96-141 44-91 (381)
168 PRK01103 formamidopyrimidine/5 26.8 62 0.0013 29.4 2.9 28 128-156 244-271 (274)
169 TIGR00577 fpg formamidopyrimid 26.4 64 0.0014 29.4 2.9 28 128-156 244-271 (272)
170 PRK06266 transcription initiat 26.1 18 0.00038 31.5 -0.6 12 92-103 114-125 (178)
171 smart00531 TFIIE Transcription 26.0 23 0.00049 29.4 0.0 12 92-103 96-107 (147)
172 PRK14973 DNA topoisomerase I; 25.3 87 0.0019 34.0 4.1 58 96-155 589-662 (936)
173 COG5152 Uncharacterized conser 25.3 20 0.00044 33.8 -0.4 41 96-137 197-238 (259)
174 COG5243 HRD1 HRD ubiquitin lig 25.2 20 0.00044 36.4 -0.5 36 110-145 314-350 (491)
175 COG4306 Uncharacterized protei 25.1 25 0.00054 31.2 0.1 22 117-140 29-50 (160)
176 TIGR00595 priA primosomal prot 24.3 66 0.0014 31.9 2.8 38 98-138 225-262 (505)
177 KOG0955|consensus 24.3 40 0.00087 37.3 1.5 40 93-142 234-273 (1051)
178 PF10571 UPF0547: Uncharacteri 23.8 31 0.00067 22.1 0.3 19 119-137 3-22 (26)
179 PRK05580 primosome assembly pr 23.6 79 0.0017 32.5 3.3 46 116-168 381-430 (679)
180 PF04194 PDCD2_C: Programmed c 23.6 67 0.0014 27.3 2.4 39 66-105 67-107 (164)
181 COG1499 NMD3 NMD protein affec 23.5 33 0.00071 33.4 0.6 40 91-136 2-50 (355)
182 PF13831 PHD_2: PHD-finger; PD 23.5 22 0.00048 23.9 -0.4 31 95-135 4-35 (36)
183 smart00575 ZnF_PMZ plant mutat 23.3 21 0.00046 22.6 -0.5 8 112-119 13-20 (28)
184 KOG2186|consensus 23.2 19 0.00041 34.5 -1.0 43 131-180 5-49 (276)
185 PF10249 NDUFB10: NADH-ubiquin 23.1 46 0.001 28.6 1.3 22 238-259 18-42 (128)
186 COG5027 SAS2 Histone acetyltra 22.7 59 0.0013 32.7 2.1 33 144-185 152-184 (395)
187 PF02150 RNA_POL_M_15KD: RNA p 22.5 1.2E+02 0.0027 20.2 3.0 26 131-158 3-28 (35)
188 PF09297 zf-NADH-PPase: NADH p 22.3 57 0.0012 20.9 1.3 27 129-158 3-29 (32)
189 PF14354 Lar_restr_allev: Rest 22.0 1.3E+02 0.0028 21.1 3.2 30 129-158 3-37 (61)
190 PRK09678 DNA-binding transcrip 21.5 89 0.0019 24.3 2.5 36 131-174 3-44 (72)
191 smart00834 CxxC_CXXC_SSSS Puta 21.4 77 0.0017 20.3 1.9 15 128-142 25-39 (41)
192 KOG1002|consensus 20.7 25 0.00055 37.2 -0.8 74 62-140 504-586 (791)
193 PHA00733 hypothetical protein 20.7 58 0.0012 27.0 1.4 20 164-183 104-123 (128)
194 COG3813 Uncharacterized protei 20.6 34 0.00073 27.8 0.0 30 110-140 23-52 (84)
195 PF10217 DUF2039: Uncharacteri 20.6 28 0.0006 28.5 -0.5 21 115-138 70-90 (92)
196 PF12760 Zn_Tnp_IS1595: Transp 20.5 1.4E+02 0.0031 20.4 3.2 25 130-156 19-43 (46)
197 COG0675 Transposase and inacti 20.3 79 0.0017 26.9 2.2 37 128-183 308-344 (364)
198 COG1997 RPL43A Ribosomal prote 20.1 1E+02 0.0022 25.4 2.7 28 130-160 36-63 (89)
No 1
>KOG2932|consensus
Probab=100.00 E-value=1.1e-61 Score=451.70 Aligned_cols=165 Identities=39% Similarity=0.674 Sum_probs=149.4
Q ss_pred cccccccccccccCCceeecccCCCCCcceeeccceeeeecccccCCcceecccCCCceEEEEeecccccccccccccCC
Q psy6453 47 TQIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAP 126 (282)
Q Consensus 47 ~~~d~eadisqleap~ftt~~r~Ppe~mlrl~wd~kVnLIGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~ 126 (282)
..+|||+||+++|+|+|++|+|+|+ +|+|+++|+++|||++++++||||+|||||+||||||||||||||+||+++
T Consensus 46 ~tv~~e~~~~~~~~p~f~~~~r~pp----hl~w~~~V~~~gek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~ 121 (389)
T KOG2932|consen 46 VTVACEDHLVLADLPVFKGIGRVPP----HLTWIKPVGRRGEKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSD 121 (389)
T ss_pred eeeccchhhhhcCCchhcccccCCC----ceeeeeecccccccccCcceEeecccCCcceeeecccccchhhhhhhhhcC
Confidence 4899999999999999999999999 999999999999999999999999999999999999999999999999997
Q ss_pred CCCCccCCCccceeeeeEecCCcEEEcccCCccccCccccccccChHhHHHHhhccCCCCCcccccccchhhhhcccCCc
Q psy6453 127 RSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGPHPRLHRKDHRLFRALVSGICPL 206 (282)
Q Consensus 127 k~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h~~p~~~~~~~~~~~a~~~~~~p~ 206 (282)
++|+|++|+|+|+||||+.+|+||||+. ++||+|||||||||||||||+|. +..+.++++ ++|.-|-
T Consensus 122 -~dK~Cp~C~d~VqrIeq~~~g~iFmC~~------~~GC~RTyLsqrDlqAHInhrH~-----~~~~p~~~~-e~~~pp~ 188 (389)
T KOG2932|consen 122 -SDKICPLCDDRVQRIEQIMMGGIFMCAA------PHGCLRTYLSQRDLQAHINHRHG-----SLLQPDAEK-EDGNPPD 188 (389)
T ss_pred -ccccCcCcccHHHHHHHhcccceEEeec------chhHHHHHhhHHHHHHHhhhhhc-----cccCCchhh-hcCCCCC
Confidence 6999999999999999999999999996 99999999999999999999994 333333333 3344555
Q ss_pred eEecCCCCCCCccccCCcccee
Q psy6453 207 VVLSLRGSSIDDCMTGGPRLAL 228 (282)
Q Consensus 207 v~~~~~~ss~~~~~~~~p~~~l 228 (282)
+...+.+|+++.+..+.|.+.+
T Consensus 189 ~qp~~q~s~~~e~p~~~~l~s~ 210 (389)
T KOG2932|consen 189 VQPTMQQSSASESPLRAPLRSQ 210 (389)
T ss_pred CCCccccchhhcCCcccchhcc
Confidence 6777889999999888887766
No 2
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.46 E-value=2.8e-05 Score=53.20 Aligned_cols=45 Identities=27% Similarity=0.662 Sum_probs=34.5
Q ss_pred ecccCCCceEEEEeecccccc-cccccccC-CCCCCccCCCccceeee
Q psy6453 97 TCEKCEKPIMIYGRMIPCRHV-FCLSCAQA-PRSPPTCLRCGEGVTRV 142 (282)
Q Consensus 97 FCdkCdlPI~IYGRmIPCKHV-FCy~CA~l-~k~~k~CprC~d~V~rI 142 (282)
.|.+|.-... ..-+.||.|. ||++|+.. .+..+.||.|..+|++|
T Consensus 4 ~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 4 ECPICFENPR-DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp B-TTTSSSBS-SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CCccCCccCC-ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4777766543 3577899999 99999986 24678999999999986
No 3
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.29 E-value=6.5e-05 Score=48.86 Aligned_cols=38 Identities=29% Similarity=0.759 Sum_probs=31.1
Q ss_pred cccCCCceEEEEeecccccccccccccC--C-CCCCccCCC
Q psy6453 98 CEKCEKPIMIYGRMIPCRHVFCLSCAQA--P-RSPPTCLRC 135 (282)
Q Consensus 98 CdkCdlPI~IYGRmIPCKHVFCy~CA~l--~-k~~k~CprC 135 (282)
|.+|.-++..-.++.||.|.||++|... + .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 6778887777779999999999999987 2 456668887
No 4
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.14 E-value=0.00013 Score=45.44 Aligned_cols=42 Identities=31% Similarity=0.705 Sum_probs=31.8
Q ss_pred cccCCCceEEEEeecccccccccccccC--CCCCCccCCCccce
Q psy6453 98 CEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGV 139 (282)
Q Consensus 98 CdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V 139 (282)
|.+|.-.+....++.||.|.||.+|... .+....||.|...+
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 6777777766667778999999999975 22356799998653
No 5
>KOG2879|consensus
Probab=96.96 E-value=0.00026 Score=66.75 Aligned_cols=51 Identities=31% Similarity=0.710 Sum_probs=43.1
Q ss_pred eecccCCCceEEEEeecccccccccccccCCC-CC--CccCCCccceeeeeEec
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPR-SP--PTCLRCGEGVTRVEPTG 146 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k-~~--k~CprC~d~V~rIEq~~ 146 (282)
.-|+.|+.|=.|=.-+-||.|++||-|++... .+ -+||.|++.|..+|..+
T Consensus 240 ~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq~sg 293 (298)
T KOG2879|consen 240 TECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQASG 293 (298)
T ss_pred ceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchhhcc
Confidence 68999999999999999999999999999731 22 37999999999888554
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.82 E-value=0.00053 Score=62.26 Aligned_cols=50 Identities=26% Similarity=0.681 Sum_probs=40.6
Q ss_pred eecccCCCceEE-------EEeecccccccccccccC-CCCCCccCCCccceeeeeEe
Q psy6453 96 HTCEKCEKPIMI-------YGRMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVTRVEPT 145 (282)
Q Consensus 96 HFCdkCdlPI~I-------YGRmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~rIEq~ 145 (282)
.-|.+|--++.- +|.+.+|.|+||.+|... .+...+||.|...+..|...
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 579999877542 477889999999999976 34677899999999988654
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.80 E-value=0.00034 Score=45.94 Aligned_cols=38 Identities=29% Similarity=0.727 Sum_probs=26.7
Q ss_pred cccCCCceEEEEeecccccccccccccC-CCCCCccCCC
Q psy6453 98 CEKCEKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRC 135 (282)
Q Consensus 98 CdkCdlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC 135 (282)
|.+|--.+.--..+.+|.|+||++|+.. .+....||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 5566555555557899999999999987 1226788887
No 8
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.24 E-value=0.0018 Score=43.75 Aligned_cols=39 Identities=26% Similarity=0.689 Sum_probs=30.9
Q ss_pred cccCCCce--EEEEeecccccccccccccCCC-CCCccCCCc
Q psy6453 98 CEKCEKPI--MIYGRMIPCRHVFCLSCAQAPR-SPPTCLRCG 136 (282)
Q Consensus 98 CdkCdlPI--~IYGRmIPCKHVFCy~CA~l~k-~~k~CprC~ 136 (282)
|.+|-.++ ....++.+|.|+||.+|+.... ....||.|+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~ 43 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICR 43 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCC
Confidence 66777777 4458899999999999999643 456799986
No 9
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.03 E-value=0.0016 Score=39.08 Aligned_cols=27 Identities=37% Similarity=0.910 Sum_probs=19.9
Q ss_pred EeecccccccccccccC--CCCCCccCCC
Q psy6453 109 GRMIPCRHVFCLSCAQA--PRSPPTCLRC 135 (282)
Q Consensus 109 GRmIPCKHVFCy~CA~l--~k~~k~CprC 135 (282)
-++.||.|+||+.|... .+....||.|
T Consensus 11 ~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 11 PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 45679999999999874 2245568876
No 10
>KOG2164|consensus
Probab=96.01 E-value=0.0015 Score=65.34 Aligned_cols=59 Identities=25% Similarity=0.634 Sum_probs=46.4
Q ss_pred eeccceeeeecccccCCcceecccCCCceEEEEeecccccccccccccC------CCCCCccCCCccceee
Q psy6453 77 LRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA------PRSPPTCLRCGEGVTR 141 (282)
Q Consensus 77 l~wd~kVnLIGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l------~k~~k~CprC~d~V~r 141 (282)
.+|....-.+|.+ -+-|++|--|-.+=-||. |.|+||..|.-. .++-+.||+|.+.|.-
T Consensus 173 ~~~e~i~qv~~~t-----~~~CPICL~~~~~p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 173 VDWEDIFQVYGST-----DMQCPICLEPPSVPVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred cchHHhhhhhcCc-----CCcCCcccCCCCcccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 3455444444444 388999999999999999 999999999754 4677889999999864
No 11
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=95.71 E-value=0.0011 Score=44.21 Aligned_cols=40 Identities=28% Similarity=0.596 Sum_probs=28.2
Q ss_pred ecccCCCceE--EEEeecccccccccccccC-CCCCCccCCCc
Q psy6453 97 TCEKCEKPIM--IYGRMIPCRHVFCLSCAQA-PRSPPTCLRCG 136 (282)
Q Consensus 97 FCdkCdlPI~--IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~ 136 (282)
.|.+|--.+. -..+.+||.|+||++|... -+...+||.|.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 4777777763 3555778999999999887 22356899883
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=95.29 E-value=0.0066 Score=54.31 Aligned_cols=44 Identities=30% Similarity=0.782 Sum_probs=33.7
Q ss_pred eecccCCCceEEEEeecccccccccccccC-----------------CCCCCccCCCcccee
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQA-----------------PRSPPTCLRCGEGVT 140 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l-----------------~k~~k~CprC~d~V~ 140 (282)
..|.+|--++. .....+|.|+||..|... .+....||.|...|.
T Consensus 19 ~~CpICld~~~-dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 19 FDCNICLDQVR-DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred cCCccCCCcCC-CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 67999987664 456789999999999963 123456888888876
No 13
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.08 E-value=0.0052 Score=42.41 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=34.3
Q ss_pred eecccCCCceEEEEeecccccccccccccC-CCCCCccCCCcccee
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVT 140 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~ 140 (282)
.+|+.|..++.- -.+.||.|+||..|... -+...+||.|.+.+.
T Consensus 2 ~~Cpi~~~~~~~-Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD-PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC-CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 468888887664 56789999999999986 123678999988763
No 14
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.53 E-value=0.011 Score=57.35 Aligned_cols=46 Identities=22% Similarity=0.560 Sum_probs=35.3
Q ss_pred ceecccCCCceEEEEeecccccccccccccC-CCCCCccCCCccceee
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVTR 141 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~r 141 (282)
...|.+|.-.+..- .+.||.|.||..|... ......||.|...+..
T Consensus 26 ~l~C~IC~d~~~~P-vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFFDVP-VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCcCchhhhCc-cCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 36899998766544 4789999999999985 2234579999998863
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=93.63 E-value=0.018 Score=53.44 Aligned_cols=50 Identities=20% Similarity=0.654 Sum_probs=37.8
Q ss_pred eecccCCCceE--------EEEeecccccccccccccCCC-------CCCccCCCccceeeeeEe
Q psy6453 96 HTCEKCEKPIM--------IYGRMIPCRHVFCLSCAQAPR-------SPPTCLRCGEGVTRVEPT 145 (282)
Q Consensus 96 HFCdkCdlPI~--------IYGRmIPCKHVFCy~CA~l~k-------~~k~CprC~d~V~rIEq~ 145 (282)
.-|.+|--.+. -+|-+-+|.|+||.+|.+.-. ....||.|......|...
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred CCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 56888875542 478899999999999998611 234599999988877654
No 16
>KOG0978|consensus
Probab=93.63 E-value=0.017 Score=59.86 Aligned_cols=43 Identities=26% Similarity=0.686 Sum_probs=30.6
Q ss_pred ceecccCCCceEEEEeecccccccccccccC--CCCCCccCCCccc
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEG 138 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~ 138 (282)
..-|+.|+---+= -.|.=|+||||+.|.+- .--+.+||-|+..
T Consensus 643 ~LkCs~Cn~R~Kd-~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~a 687 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD-AVITKCGHVFCEECVQTRYETRQRKCPKCNAA 687 (698)
T ss_pred ceeCCCccCchhh-HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 4679999833221 22456999999999875 3347789999865
No 17
>KOG0320|consensus
Probab=93.25 E-value=0.019 Score=51.66 Aligned_cols=46 Identities=24% Similarity=0.573 Sum_probs=35.4
Q ss_pred ceecccCCCceEEEE-eecccccccccccccC-CCCCCccCCCcccee
Q psy6453 95 IHTCEKCEKPIMIYG-RMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVT 140 (282)
Q Consensus 95 iHFCdkCdlPI~IYG-RmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~ 140 (282)
..-|++|--+..-.. .--=|.||||-.|++- -+.+.+||.|..+|.
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 377999977665443 2256999999999987 357888999998775
No 18
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.10 E-value=0.035 Score=52.70 Aligned_cols=47 Identities=23% Similarity=0.597 Sum_probs=32.5
Q ss_pred ecccCCCceEEEEe---e-cccccccccccccC--CCCCCccCCCccceeeee
Q psy6453 97 TCEKCEKPIMIYGR---M-IPCRHVFCLSCAQA--PRSPPTCLRCGEGVTRVE 143 (282)
Q Consensus 97 FCdkCdlPI~IYGR---m-IPCKHVFCy~CA~l--~k~~k~CprC~d~V~rIE 143 (282)
-|+.|---.-.--+ | .+|.|.||.+|... ..+...||.|...+.+-+
T Consensus 5 ~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 57777652111111 1 28999999999987 456678999998887654
No 19
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=92.87 E-value=0.055 Score=32.05 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=15.9
Q ss_pred cccccccChHhHHHHhh
Q psy6453 164 GCKRTYLSQRDLMALGR 180 (282)
Q Consensus 164 gCkRTYLSQRDLQAHIn 180 (282)
-|.++|.|+..|++|.+
T Consensus 5 ~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 5 ICNKSFSSENSLRQHLR 21 (25)
T ss_dssp TTTEEESSHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHC
Confidence 39999999999999987
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=92.84 E-value=0.039 Score=37.68 Aligned_cols=16 Identities=44% Similarity=1.090 Sum_probs=13.3
Q ss_pred eecccccccccccccC
Q psy6453 110 RMIPCRHVFCLSCAQA 125 (282)
Q Consensus 110 RmIPCKHVFCy~CA~l 125 (282)
..++|.|+||.+|...
T Consensus 12 v~l~CGH~FC~~Cl~~ 27 (42)
T PF15227_consen 12 VSLPCGHSFCRSCLER 27 (42)
T ss_dssp EE-SSSSEEEHHHHHH
T ss_pred cccCCcCHHHHHHHHH
Confidence 4679999999999876
No 21
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=92.60 E-value=0.07 Score=31.03 Aligned_cols=18 Identities=22% Similarity=0.384 Sum_probs=16.4
Q ss_pred cccccccChHhHHHHhhc
Q psy6453 164 GCKRTYLSQRDLMALGRH 181 (282)
Q Consensus 164 gCkRTYLSQRDLQAHInH 181 (282)
.|.++|-++.+|+.|++-
T Consensus 5 ~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 5 ICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp TTTEEESSHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHhH
Confidence 599999999999999973
No 22
>KOG0824|consensus
Probab=92.53 E-value=0.046 Score=52.52 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=25.2
Q ss_pred eecccccccccccccC--CCCCCccCCCcccee
Q psy6453 110 RMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVT 140 (282)
Q Consensus 110 RmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~ 140 (282)
...+|+|+|||-|.+- .+..+.|++|.-+|-
T Consensus 21 v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 21 VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred ccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 4568999999999987 456677999987764
No 23
>KOG4739|consensus
Probab=91.71 E-value=0.083 Score=48.62 Aligned_cols=47 Identities=34% Similarity=0.733 Sum_probs=32.6
Q ss_pred cccCCC-ceEEEEeecccccccccccccCCCCCCccCCCccceeeeeEec
Q psy6453 98 CEKCEK-PIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRVEPTG 146 (282)
Q Consensus 98 CdkCdl-PI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rIEq~~ 146 (282)
|.+|.. |=.+-=++--|.||||..|..+.- ...|+.|... .+|-++.
T Consensus 6 Cn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~-~~~C~lCkk~-ir~i~l~ 53 (233)
T KOG4739|consen 6 CNKCFRFPSQDPFFLTACRHVFCEPCLKASS-PDVCPLCKKS-IRIIQLN 53 (233)
T ss_pred eccccccCCCCceeeeechhhhhhhhcccCC-ccccccccce-eeeeecc
Confidence 555542 223333456799999999999862 3399999999 5666655
No 24
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=91.58 E-value=0.12 Score=50.79 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=28.7
Q ss_pred CcEEEcccCCccccCccccccccChHhHHHHhhccCC
Q psy6453 148 GTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGP 184 (282)
Q Consensus 148 gsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h~ 184 (282)
|..|-|. |.||.|+|.||.-|+||..|.|+
T Consensus 347 ~KpykCp-------V~gC~K~YknqnGLKYH~lhGH~ 376 (423)
T COG5189 347 GKPYKCP-------VEGCNKKYKNQNGLKYHMLHGHQ 376 (423)
T ss_pred CceecCC-------CCCchhhhccccchhhhhhcccc
Confidence 7999999 79999999999999999999994
No 25
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=91.46 E-value=0.15 Score=28.62 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=17.8
Q ss_pred EEcccCCccccCccccccccChHhHHHHhhcc
Q psy6453 151 FMCTHGGARHSTAGCKRTYLSQRDLMALGRHL 182 (282)
Q Consensus 151 FMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~ 182 (282)
|.|.+ |.++|.+..+|+.|+.-.
T Consensus 1 ~~C~~---------C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPI---------CGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SS---------TS-EESSHHHHHHHHHHH
T ss_pred CCCcC---------CCCcCCcHHHHHHHHHhh
Confidence 67873 999999999999998743
No 26
>KOG0317|consensus
Probab=91.26 E-value=0.054 Score=51.45 Aligned_cols=60 Identities=25% Similarity=0.496 Sum_probs=40.2
Q ss_pred eeeccceeeeecccccCCcceecccCCCceEEEEeecccccccccccccC-CCCCCccCCCccceee
Q psy6453 76 SLRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVTR 141 (282)
Q Consensus 76 rl~wd~kVnLIGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~r 141 (282)
+++|+.+-+.+-|.+ --|..|--+.-- --.-||.|+||-+|... .+...-||.|..+++-
T Consensus 225 ~~~~s~~~~~i~~a~-----~kC~LCLe~~~~-pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 225 KLEDSNSLSSIPEAT-----RKCSLCLENRSN-PSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred chhhccCCccCCCCC-----CceEEEecCCCC-CCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 455776666665554 557767543310 12359999999999987 3455569999988763
No 27
>KOG2177|consensus
Probab=90.61 E-value=0.057 Score=42.61 Aligned_cols=41 Identities=29% Similarity=0.694 Sum_probs=31.8
Q ss_pred ceecccCCCceEEEEeecccccccccccccCC-CCCCccCCCc
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAP-RSPPTCLRCG 136 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~-k~~k~CprC~ 136 (282)
...|++|--.+..= +++||.|.||..|.... ...-.||.|.
T Consensus 13 ~~~C~iC~~~~~~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFREP-VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccChhhHHHhhcC-ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 36788887666655 99999999999999862 1235699998
No 28
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=90.05 E-value=0.23 Score=29.84 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEcccCCccccCccccccccChHhHHHHhhccC
Q psy6453 150 VFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLG 183 (282)
Q Consensus 150 VFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h 183 (282)
+|-|.. |.++|.++.+|.+|.+.-+
T Consensus 1 ~~~C~~---------C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDE---------CGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETT---------TTEEESSHHHHHHHHCTTT
T ss_pred CCCCCc---------cCCccCChhHHHHHhHHhc
Confidence 467774 9999999999999997433
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.45 E-value=0.13 Score=48.57 Aligned_cols=44 Identities=30% Similarity=0.601 Sum_probs=35.3
Q ss_pred eecccCCCceEEEEeecccccccccccccC---CCCCCccCCCcccee
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQA---PRSPPTCLRCGEGVT 140 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l---~k~~k~CprC~d~V~ 140 (282)
.-|..|.-++-.- -+-||-|+||..|... ++...+||.|..+|+
T Consensus 216 ~kC~lC~e~~~~p-s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 216 YKCFLCLEEPEVP-SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cceeeeecccCCc-ccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 5699998777654 4569999999999987 456667999998875
No 30
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=87.42 E-value=0.27 Score=38.01 Aligned_cols=43 Identities=23% Similarity=0.483 Sum_probs=20.5
Q ss_pred eecccCCCceEEEEeecccccccccccccCCCCCCccCCCccce
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGV 139 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V 139 (282)
.-|.+|.-=..+=.=|-=|.|+||..|..-.-+ +.||-|+.+.
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-SECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTT-TB-SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-CCCCCcCChH
Confidence 568888655544444567999999999986423 4599999876
No 31
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=86.64 E-value=0.37 Score=38.59 Aligned_cols=42 Identities=26% Similarity=0.719 Sum_probs=32.1
Q ss_pred eecccCCCc----eEEEEeecccccccccccccC----CCCCCccCCCcccee
Q psy6453 96 HTCEKCEKP----IMIYGRMIPCRHVFCLSCAQA----PRSPPTCLRCGEGVT 140 (282)
Q Consensus 96 HFCdkCdlP----I~IYGRmIPCKHVFCy~CA~l----~k~~k~CprC~d~V~ 140 (282)
-.|+.|.+| -++.|. |.|.|=..|... ..+.+.||+|...-+
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~---C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGK---CSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeecc---CccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 468889885 334555 999999999876 245688999988765
No 32
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=86.21 E-value=0.33 Score=36.27 Aligned_cols=39 Identities=28% Similarity=0.674 Sum_probs=28.2
Q ss_pred cccCCCce------------EEEEeecccccccccccccC-CCCCCccCCCc
Q psy6453 98 CEKCEKPI------------MIYGRMIPCRHVFCLSCAQA-PRSPPTCLRCG 136 (282)
Q Consensus 98 CdkCdlPI------------~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~ 136 (282)
|.+|--++ ..-..+-+|.|+|-..|... -+..++||+|.
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 88887777 23336678999999999985 23566999995
No 33
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.18 E-value=0.46 Score=35.31 Aligned_cols=29 Identities=34% Similarity=0.722 Sum_probs=23.3
Q ss_pred eecccCCCceEE-EEeeccccccccccccc
Q psy6453 96 HTCEKCEKPIMI-YGRMIPCRHVFCLSCAQ 124 (282)
Q Consensus 96 HFCdkCdlPI~I-YGRmIPCKHVFCy~CA~ 124 (282)
-.|..|+.+|.- ---++||.|+|-+.|++
T Consensus 79 ~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 469999999863 23456999999999986
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=84.36 E-value=0.3 Score=47.61 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=50.8
Q ss_pred ccccCCcceecccCCCceEEEEeecccccccccccccC-CCCCCccCCCccceeeeeEecCCcEEEcccCCccccCcccc
Q psy6453 88 EKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCK 166 (282)
Q Consensus 88 EK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v~gCk 166 (282)
-|.++. ..-|-+|+-=|.|. -.-||.|-||+=|.+- -..+.+||.|.+.-..+ .=+
T Consensus 19 L~~LDs-~lrC~IC~~~i~ip-~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es---------------------rlr 75 (391)
T COG5432 19 LKGLDS-MLRCRICDCRISIP-CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES---------------------RLR 75 (391)
T ss_pred hhcchh-HHHhhhhhheeecc-eecccccchhHHHHHHHhcCCCCCccccccHHhh---------------------hcc
Confidence 344555 35688887666653 2569999999999987 46788999998765421 123
Q ss_pred ccccChHhHHHHhhccC
Q psy6453 167 RTYLSQRDLMALGRHLG 183 (282)
Q Consensus 167 RTYLSQRDLQAHInH~h 183 (282)
..|++..++|.|...+.
T Consensus 76 ~~s~~~ei~es~~~~r~ 92 (391)
T COG5432 76 GSSGSREINESHARNRD 92 (391)
T ss_pred cchhHHHHHHhhhhccH
Confidence 45677788888876555
No 35
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=83.27 E-value=0.41 Score=29.37 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=15.9
Q ss_pred cccccccChHhHHHHhh
Q psy6453 164 GCKRTYLSQRDLMALGR 180 (282)
Q Consensus 164 gCkRTYLSQRDLQAHIn 180 (282)
-|.|.|.++..|+.|++
T Consensus 6 ~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 6 ACDKYFSSENQLKQHMK 22 (27)
T ss_dssp TTTBBBSSHHHHHCCTT
T ss_pred cCCCCcCCHHHHHHHHc
Confidence 49999999999999987
No 36
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=83.06 E-value=0.61 Score=35.02 Aligned_cols=32 Identities=28% Similarity=0.730 Sum_probs=27.6
Q ss_pred EEeecccccccccccccCCCCCCccCCCcccee
Q psy6453 108 YGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVT 140 (282)
Q Consensus 108 YGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~ 140 (282)
-|...||.|+.|..|--++ .-+-||.|..+++
T Consensus 19 ~~~~~pCgH~I~~~~f~~~-rYngCPfC~~~~~ 50 (55)
T PF14447_consen 19 KGTVLPCGHLICDNCFPGE-RYNGCPFCGTPFE 50 (55)
T ss_pred ccccccccceeeccccChh-hccCCCCCCCccc
Confidence 4888999999999999975 4667999998876
No 37
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=82.88 E-value=0.64 Score=47.71 Aligned_cols=39 Identities=26% Similarity=0.697 Sum_probs=29.2
Q ss_pred ceecccCCCceEEEEeecccccccccccccC-CCCCCccCCCccceeee
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVTRV 142 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~rI 142 (282)
..||+.|+.+.. +.+|..|-.. ..+.++|+.|...+..+
T Consensus 15 akFC~~CG~~l~---------~~~Cp~CG~~~~~~~~fC~~CG~~~~~~ 54 (645)
T PRK14559 15 NRFCQKCGTSLT---------HKPCPQCGTEVPVDEAHCPNCGAETGTI 54 (645)
T ss_pred CccccccCCCCC---------CCcCCCCCCCCCcccccccccCCcccch
Confidence 578888888874 3468888776 56778888888877654
No 38
>PF04641 Rtf2: Rtf2 RING-finger
Probab=82.81 E-value=0.92 Score=40.75 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=37.6
Q ss_pred cceecccCCCceEE---EEeecccccccccccccCCCCCCccCCCcccee
Q psy6453 94 IIHTCEKCEKPIMI---YGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVT 140 (282)
Q Consensus 94 ~iHFCdkCdlPI~I---YGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~ 140 (282)
....|++.++.+.= +.=+.||.|||++.+.+.-+....|+.|+.+..
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFT 161 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccc
Confidence 35789999998842 333569999999999997644668999999987
No 39
>KOG1039|consensus
Probab=82.73 E-value=0.42 Score=45.95 Aligned_cols=48 Identities=27% Similarity=0.555 Sum_probs=33.4
Q ss_pred ceecccCCCceEEEE-------eecccccccccccccCCC--C------CCccCCCccceeee
Q psy6453 95 IHTCEKCEKPIMIYG-------RMIPCRHVFCLSCAQAPR--S------PPTCLRCGEGVTRV 142 (282)
Q Consensus 95 iHFCdkCdlPI~IYG-------RmIPCKHVFCy~CA~l~k--~------~k~CprC~d~V~rI 142 (282)
-.+|-+|-=.|.--- =+-+|.|.||++|++--+ . .+.||.|......|
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 367888866554433 225599999999998732 2 36799998877744
No 40
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=81.36 E-value=0.53 Score=36.69 Aligned_cols=54 Identities=26% Similarity=0.695 Sum_probs=35.6
Q ss_pred ecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceeeeeEecCCcEEEcccC
Q psy6453 97 TCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHG 156 (282)
Q Consensus 97 FCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rIEq~~lgsVFMCt~g 156 (282)
-|++|.-|+.-.| .|++|-.|..--+....||-|.++++.+.-++--+ |.|.+|
T Consensus 3 ~CP~C~~~L~~~~-----~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACGAvd-YFC~~c 56 (70)
T PF07191_consen 3 TCPKCQQELEWQG-----GHYHCEACQKDYKKEAFCPDCGQPLEVLKACGAVD-YFCNHC 56 (70)
T ss_dssp B-SSS-SBEEEET-----TEEEETTT--EEEEEEE-TTT-SB-EEEEETTEEE-EE-TTT
T ss_pred cCCCCCCccEEeC-----CEEECccccccceecccCCCcccHHHHHHHhcccc-eeeccC
Confidence 5899999988877 78899999886445678999999999888876333 668764
No 41
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=79.04 E-value=0.91 Score=28.41 Aligned_cols=21 Identities=29% Similarity=0.822 Sum_probs=12.1
Q ss_pred cccccccC-CCCCCccCCCccc
Q psy6453 118 FCLSCAQA-PRSPPTCLRCGEG 138 (282)
Q Consensus 118 FCy~CA~l-~k~~k~CprC~d~ 138 (282)
+|-+|-.. +.++++|+.|..+
T Consensus 4 ~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 4 FCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCcccCCcCCcccccChhhCCC
Confidence 34444333 3467778888765
No 42
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=78.73 E-value=0.72 Score=32.21 Aligned_cols=16 Identities=50% Similarity=1.242 Sum_probs=12.0
Q ss_pred eecccccccccccccC
Q psy6453 110 RMIPCRHVFCLSCAQA 125 (282)
Q Consensus 110 RmIPCKHVFCy~CA~l 125 (282)
.++||.|+||.+|...
T Consensus 15 ~~L~CGH~~c~~cl~~ 30 (43)
T PF13445_consen 15 MVLPCGHVFCKDCLQK 30 (43)
T ss_dssp EE-SSS-EEEHHHHHH
T ss_pred EEEeCccHHHHHHHHH
Confidence 5678999999999874
No 43
>smart00355 ZnF_C2H2 zinc finger.
Probab=76.84 E-value=1.9 Score=23.94 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.9
Q ss_pred cccccccChHhHHHHhhccC
Q psy6453 164 GCKRTYLSQRDLMALGRHLG 183 (282)
Q Consensus 164 gCkRTYLSQRDLQAHInH~h 183 (282)
.|.++|.+..+|+.|+. .|
T Consensus 5 ~C~~~f~~~~~l~~H~~-~H 23 (26)
T smart00355 5 ECGKVFKSKSALKEHMR-TH 23 (26)
T ss_pred CCcchhCCHHHHHHHHH-Hh
Confidence 49999999999999998 44
No 44
>KOG3362|consensus
Probab=76.69 E-value=1 Score=39.86 Aligned_cols=20 Identities=20% Similarity=0.620 Sum_probs=11.5
Q ss_pred cEEEcccCCccccCcccccc
Q psy6453 149 TVFMCTHGGARHSTAGCKRT 168 (282)
Q Consensus 149 sVFMCt~gg~r~~v~gCkRT 168 (282)
++|.|.-||++|-.-+|.++
T Consensus 128 S~ysC~~CG~kyCsv~C~~~ 147 (156)
T KOG3362|consen 128 SKYSCVNCGTKYCSVRCLKT 147 (156)
T ss_pred chhHHHhcCCceeechhhhh
Confidence 45666666666655555443
No 45
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=76.31 E-value=1.9 Score=31.86 Aligned_cols=32 Identities=28% Similarity=0.642 Sum_probs=25.8
Q ss_pred CccCCCccceeeeeEecCCcEEEcccCCccccC
Q psy6453 130 PTCLRCGEGVTRVEPTGLGTVFMCTHGGARHST 162 (282)
Q Consensus 130 k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v 162 (282)
..||.|...|. |+.-.+|.+..|..||+.+.+
T Consensus 3 ~~CP~CG~~ie-v~~~~~GeiV~Cp~CGaeleV 34 (54)
T TIGR01206 3 FECPDCGAEIE-LENPELGELVICDECGAELEV 34 (54)
T ss_pred cCCCCCCCEEe-cCCCccCCEEeCCCCCCEEEE
Confidence 47999999774 555457999999999998876
No 46
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=75.95 E-value=2.1 Score=44.02 Aligned_cols=52 Identities=27% Similarity=0.609 Sum_probs=38.8
Q ss_pred eecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceeeeeEecCCcEEEcccCCccccC
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHST 162 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v 162 (282)
.+|+.|+.. +|=.+.||-.|-..- ..+.|+.|...+. .+--.|..||++-+.
T Consensus 2 ~~Cp~Cg~~-------n~~~akFC~~CG~~l-~~~~Cp~CG~~~~-------~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 2 LICPQCQFE-------NPNNNRFCQKCGTSL-THKPCPQCGTEVP-------VDEAHCPNCGAETGT 53 (645)
T ss_pred CcCCCCCCc-------CCCCCccccccCCCC-CCCcCCCCCCCCC-------cccccccccCCcccc
Confidence 479999988 566888999997743 3478999999865 333469988877543
No 47
>PF12773 DZR: Double zinc ribbon
Probab=75.89 E-value=2.1 Score=29.10 Aligned_cols=37 Identities=22% Similarity=0.608 Sum_probs=20.1
Q ss_pred ceecccCCCceEEEEeecccccccccccccC-CCCCCccCCC
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRC 135 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC 135 (282)
..||+.|+.++.. .+=.-++|-.|... ....++|+.|
T Consensus 12 ~~fC~~CG~~l~~----~~~~~~~C~~Cg~~~~~~~~fC~~C 49 (50)
T PF12773_consen 12 AKFCPHCGTPLPP----PDQSKKICPNCGAENPPNAKFCPNC 49 (50)
T ss_pred ccCChhhcCChhh----ccCCCCCCcCCcCCCcCCcCccCcc
Confidence 6899999988881 01112345555444 3344445544
No 48
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.98 E-value=2.8 Score=35.14 Aligned_cols=42 Identities=26% Similarity=0.556 Sum_probs=31.8
Q ss_pred eecccCCCceEE-------------EEeecccccccccccccC-CCCCCccCCCcc
Q psy6453 96 HTCEKCEKPIMI-------------YGRMIPCRHVFCLSCAQA-PRSPPTCLRCGE 137 (282)
Q Consensus 96 HFCdkCdlPI~I-------------YGRmIPCKHVFCy~CA~l-~k~~k~CprC~d 137 (282)
..|-.|..++.. +.+--=|+++||.+|-.. -..-..||+|..
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 568888887643 344667999999999887 346677999974
No 49
>KOG4628|consensus
Probab=74.40 E-value=1.5 Score=42.46 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=33.9
Q ss_pred eecccCC--CceEEEEeecccccccccccccC--CCCCCccCCCccceee
Q psy6453 96 HTCEKCE--KPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTR 141 (282)
Q Consensus 96 HFCdkCd--lPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~r 141 (282)
--|.+|- +----.-|..||+|.|=-+|... -+.-++||.|+..+-.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4788884 33334568899999999999987 2234679999987653
No 50
>KOG1813|consensus
Probab=73.25 E-value=1.4 Score=42.48 Aligned_cols=43 Identities=28% Similarity=0.575 Sum_probs=29.8
Q ss_pred ecccCCCceEEEEeecccccccccccccCCC-CCCccCCCcccee
Q psy6453 97 TCEKCEKPIMIYGRMIPCRHVFCLSCAQAPR-SPPTCLRCGEGVT 140 (282)
Q Consensus 97 FCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k-~~k~CprC~d~V~ 140 (282)
-|.+|..++.--.|. -|+|.||..||...- ....|+.|+..+.
T Consensus 243 ~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVT-KCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred cccccccccccchhh-cCCceeehhhhccccccCCcceecccccc
Confidence 499999887654443 599999999999642 2245766665443
No 51
>KOG4399|consensus
Probab=73.09 E-value=0.65 Score=44.63 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=60.4
Q ss_pred ecccCCCceEEEEeecccccc----cccccccCCCCCCccCCCccceeeeeEecCCcEEEcccCCcccc-CccccccccC
Q psy6453 97 TCEKCEKPIMIYGRMIPCRHV----FCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHS-TAGCKRTYLS 171 (282)
Q Consensus 97 FCdkCdlPI~IYGRmIPCKHV----FCy~CA~l~k~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~-v~gCkRTYLS 171 (282)
-|-+|-+|=. .--+=|+|+ ||.-|-+++-.-.+|++| ..|.++||-.-...=||+.+|.||. ...|+|-=+-
T Consensus 240 ~~~~~~~~~~--i~C~~~~~~A~~~~C~iC~~~~~~R~~C~~~-kA~~~~~Q~K~N~~~~~~~~~q~~~H~s~~~R~~~~ 316 (325)
T KOG4399|consen 240 LCKKCVKPSW--IHCSICNHCAVKHGCFICGELDHKRSTCPNI-KAVRKQKQRKSNKMKMETTKGQSMNHTSATRRKKRR 316 (325)
T ss_pred Hhhhhcccce--eeeecccchhhhcceeeccccccccccCccH-HHHHHHHhcccchhhhhhhhhhhhHHHHHHHHHHHH
Confidence 3566667765 355668887 899999997666889999 6789999988788889999998874 3456666666
Q ss_pred hHhHHHH
Q psy6453 172 QRDLMAL 178 (282)
Q Consensus 172 QRDLQAH 178 (282)
.|.-|+|
T Consensus 317 ~R~~Q~~ 323 (325)
T KOG4399|consen 317 ERAHQYL 323 (325)
T ss_pred HHHHHhh
Confidence 6666665
No 52
>KOG1100|consensus
Probab=72.70 E-value=2.6 Score=37.69 Aligned_cols=41 Identities=32% Similarity=0.715 Sum_probs=32.7
Q ss_pred cccCCCceEEEEeecccccc-cccccccCCCCCCccCCCccceeee
Q psy6453 98 CEKCEKPIMIYGRMIPCRHV-FCLSCAQAPRSPPTCLRCGEGVTRV 142 (282)
Q Consensus 98 CdkCdlPI~IYGRmIPCKHV-FCy~CA~l~k~~k~CprC~d~V~rI 142 (282)
|-+|+.-=.- .-+.||.|. +|..|+. +.+.||.|...+++-
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~---~~~~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDE---SLRICPICRSPKTSS 202 (207)
T ss_pred ceecCcCCce-EEeecccceEecccccc---cCccCCCCcChhhce
Confidence 8889875444 678999985 8999998 467899999988743
No 53
>KOG0297|consensus
Probab=72.27 E-value=2.6 Score=40.45 Aligned_cols=89 Identities=20% Similarity=0.412 Sum_probs=55.9
Q ss_pred eeeecccccCCcceecccCCCceEEEEeecccccccccccccCC-CCCCccCCCccceeeeeEec---------CCcEEE
Q psy6453 83 VHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAP-RSPPTCLRCGEGVTRVEPTG---------LGTVFM 152 (282)
Q Consensus 83 VnLIGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~-k~~k~CprC~d~V~rIEq~~---------lgsVFM 152 (282)
.+-.+++++.. ..|..|-.++.---.-..|.|.||..|.... .....|+.|...+.-.|... .+.--.
T Consensus 11 ~~~~~~~~~~~--l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 88 (391)
T KOG0297|consen 11 LKHLGRPLDEN--LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIR 88 (391)
T ss_pred ccccCCCCccc--ccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence 34444443332 7899998877665554689999999999983 33577999977776666553 122223
Q ss_pred cccCCccccCccccccccChHhHHHHh
Q psy6453 153 CTHGGARHSTAGCKRTYLSQRDLMALG 179 (282)
Q Consensus 153 Ct~gg~r~~v~gCkRTYLSQRDLQAHI 179 (282)
|.+ ...||... +.-+.||-|-
T Consensus 89 c~~-----~~~GC~~~-~~l~~~~~Hl 109 (391)
T KOG0297|consen 89 CIF-----ASRGCRAD-LELEALQGHL 109 (391)
T ss_pred ccc-----CCCCcccc-ccHHHHHhHh
Confidence 432 35777654 3444555553
No 54
>KOG2807|consensus
Probab=72.23 E-value=1.1 Score=43.95 Aligned_cols=42 Identities=31% Similarity=0.567 Sum_probs=28.9
Q ss_pred eecccC--CCceEEEEeecccccccccccccC-CCCCCccCCCcc
Q psy6453 96 HTCEKC--EKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRCGE 137 (282)
Q Consensus 96 HFCdkC--dlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~d 137 (282)
-||-.| .+-=.-..|-=-||++||.+|-.+ -.+--.||.|.-
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 456666 111222345667999999999988 357788999974
No 55
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=71.92 E-value=2.6 Score=32.74 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=35.2
Q ss_pred eeeeeEecCCcEEEcccCCccccCccccccccChHhHHHHhh--ccCCCCCccccccc
Q psy6453 139 VTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGR--HLGPHPRLHRKDHR 194 (282)
Q Consensus 139 V~rIEq~~lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHIn--H~h~~p~~~~~~~~ 194 (282)
..+||.-..|.+|-|+ .|..-|--|.|+-.|+| |.|+.-++++..+.
T Consensus 6 A~Kv~~RDGE~~lrCP---------RC~~~FR~~K~Y~RHVNKaH~~~~~r~k~~~k~ 54 (65)
T COG4049 6 AIKVRDRDGEEFLRCP---------RCGMVFRRRKDYIRHVNKAHGWLFGRGKPKGKR 54 (65)
T ss_pred eeEeeccCCceeeeCC---------chhHHHHHhHHHHHHhhHHhhhhhcCCchhHHH
Confidence 3466766688899998 59999999999999999 55544455555443
No 56
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=71.20 E-value=1.6 Score=31.99 Aligned_cols=29 Identities=24% Similarity=0.646 Sum_probs=16.3
Q ss_pred EeecccccccccccccC-CCCCCccCCCcc
Q psy6453 109 GRMIPCRHVFCLSCAQA-PRSPPTCLRCGE 137 (282)
Q Consensus 109 GRmIPCKHVFCy~CA~l-~k~~k~CprC~d 137 (282)
.|--=|+++||.+|-.. -...-.||+|.+
T Consensus 22 y~C~~C~~~FC~dCD~fiHE~LH~CPGC~s 51 (51)
T PF07975_consen 22 YRCPKCKNHFCIDCDVFIHETLHNCPGCES 51 (51)
T ss_dssp E--TTTT--B-HHHHHTTTTTS-SSSTT--
T ss_pred EECCCCCCccccCcChhhhccccCCcCCCC
Confidence 44445899999999887 346777999963
No 57
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=70.98 E-value=4.6 Score=28.99 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCcEEEcccCCccccCccccccccChHhHHHHhh-ccCC
Q psy6453 147 LGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGR-HLGP 184 (282)
Q Consensus 147 lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHIn-H~h~ 184 (282)
...-|.|.. |.+.|-|...|+.|++ +.|.
T Consensus 47 ~~~~~~C~~---------C~~~f~s~~~l~~Hm~~~~H~ 76 (100)
T PF12756_consen 47 VKESFRCPY---------CNKTFRSREALQEHMRSKHHK 76 (100)
T ss_dssp --SSEEBSS---------SS-EESSHHHHHHHHHHTTTT
T ss_pred cCCCCCCCc---------cCCCCcCHHHHHHHHcCccCC
Confidence 344689985 9999999999999999 5663
No 58
>KOG3039|consensus
Probab=67.27 E-value=2.1 Score=41.02 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=51.4
Q ss_pred cccccccCCceeecccCCCCCcceeecccee--eeecc-cccC-----CcceecccCCCceEE---EEeecccccccccc
Q psy6453 53 ADISQLEAPTFTTITRGPPKPMLSLRWDHTV--HLIGE-KVLN-----PIIHTCEKCEKPIMI---YGRMIPCRHVFCLS 121 (282)
Q Consensus 53 adisqleap~ftt~~r~Ppe~mlrl~wd~kV--nLIGE-K~~n-----p~iHFCdkCdlPI~I---YGRmIPCKHVFCy~ 121 (282)
|-...||+|.-|+.----.+| |+|.==+.| ..+.- -... -....|+.|---... -..+-||+||||++
T Consensus 172 A~atklekP~~~v~CP~s~kp-lklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~e 250 (303)
T KOG3039|consen 172 AAATKLEKPSTTVVCPVSGKP-LKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKE 250 (303)
T ss_pred hhhhcccCCCceeeccCCCCc-cchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcEeeHH
Confidence 445567777755543222222 344433333 32222 1111 134789988643221 12367999999999
Q ss_pred cccC-CCCCCccCCCcccee
Q psy6453 122 CAQA-PRSPPTCLRCGEGVT 140 (282)
Q Consensus 122 CA~l-~k~~k~CprC~d~V~ 140 (282)
|++- -+.+..||.|+++..
T Consensus 251 cvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 251 CVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred HHHHhccccccccCCCCcCc
Confidence 9986 468999999999876
No 59
>KOG4265|consensus
Probab=65.98 E-value=1.3 Score=43.08 Aligned_cols=48 Identities=23% Similarity=0.565 Sum_probs=35.8
Q ss_pred ceecccCCCceEEEEeecccccc-cccccccCC-CCCCccCCCccceeeee
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHV-FCLSCAQAP-RSPPTCLRCGEGVTRVE 143 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHV-FCy~CA~l~-k~~k~CprC~d~V~rIE 143 (282)
..-|.+|---..- --+.||+|. .|-+||+.- -..+.||.|...|+..=
T Consensus 290 gkeCVIClse~rd-t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 290 GKECVICLSESRD-TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELL 339 (349)
T ss_pred CCeeEEEecCCcc-eEEecchhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence 4789999654433 235799997 899999983 34677999999998543
No 60
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=64.53 E-value=4.7 Score=33.37 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=22.7
Q ss_pred CCccCCCccceeeeeEec------------CCcEEEcccCCccc
Q psy6453 129 PPTCLRCGEGVTRVEPTG------------LGTVFMCTHGGARH 160 (282)
Q Consensus 129 ~k~CprC~d~V~rIEq~~------------lgsVFMCt~gg~r~ 160 (282)
-+.|+.||..+..|+.-. .+.+|.|+.||.-|
T Consensus 91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiy 134 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIY 134 (147)
T ss_pred CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEe
Confidence 467999999888876542 35699999644444
No 61
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=64.22 E-value=4.3 Score=30.98 Aligned_cols=47 Identities=23% Similarity=0.463 Sum_probs=33.1
Q ss_pred ceecccCCCceEEEEeecccccccccccccCCCCCCc-cCCCccc-eeeeeEec-CCcEEEcccCCc
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPT-CLRCGEG-VTRVEPTG-LGTVFMCTHGGA 158 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~-CprC~d~-V~rIEq~~-lgsVFMCt~gg~ 158 (282)
...|..|+.+|.-.++ ...+ ||.|.+. |.|-+.+. .+..|.|..||-
T Consensus 7 ~~~CtSCg~~i~~~~~-----------------~~~F~CPnCG~~~I~RC~~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 7 PPKCTSCGIEIAPREK-----------------AVKFLCPNCGEVIIYRCEKCRKQSNPYTCPKCGF 56 (59)
T ss_pred CccccCCCCcccCCCc-----------------cCEeeCCCCCCeeEeechhHHhcCCceECCCCCC
Confidence 4678888888765332 2233 7788776 77877777 788999987764
No 62
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=63.18 E-value=3.4 Score=33.52 Aligned_cols=54 Identities=24% Similarity=0.564 Sum_probs=37.1
Q ss_pred eecccccCCcc---eecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceeeeeEecC
Q psy6453 85 LIGEKVLNPII---HTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGL 147 (282)
Q Consensus 85 LIGEK~~np~i---HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rIEq~~l 147 (282)
|+.-+..||.. .-|.+|---+.-.| |-||..||. ....|.||...|..+.....
T Consensus 31 lLs~~~~nPy~~~~~~C~~CK~~v~q~g------~~YCq~CAY---kkGiCamCGKki~dtk~ykq 87 (90)
T PF10235_consen 31 LLSKKKKNPYAPYSSKCKICKTKVHQPG------AKYCQTCAY---KKGICAMCGKKILDTKNYKQ 87 (90)
T ss_pred eecccccCcccccCccccccccccccCC------CccChhhhc---ccCcccccCCeecccccccc
Confidence 34444446554 36888876665433 569999999 45899999999987665443
No 63
>PHA00616 hypothetical protein
Probab=61.54 E-value=3.4 Score=29.69 Aligned_cols=20 Identities=5% Similarity=0.230 Sum_probs=17.8
Q ss_pred cccccccChHhHHHHhhccC
Q psy6453 164 GCKRTYLSQRDLMALGRHLG 183 (282)
Q Consensus 164 gCkRTYLSQRDLQAHInH~h 183 (282)
.|+++|.+.++|..|++-.|
T Consensus 6 ~CG~~F~~~s~l~~H~r~~h 25 (44)
T PHA00616 6 RCGGIFRKKKEVIEHLLSVH 25 (44)
T ss_pred hhhHHHhhHHHHHHHHHHhc
Confidence 49999999999999998555
No 64
>KOG0823|consensus
Probab=60.15 E-value=3.5 Score=38.33 Aligned_cols=33 Identities=24% Similarity=0.565 Sum_probs=25.8
Q ss_pred ccccccccccccC----CCCCCccCCCccceeeeeEe
Q psy6453 113 PCRHVFCLSCAQA----PRSPPTCLRCGEGVTRVEPT 145 (282)
Q Consensus 113 PCKHVFCy~CA~l----~k~~k~CprC~d~V~rIEq~ 145 (282)
+|-|.||.-|... ...-+.||-|+..|..=+-.
T Consensus 64 lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 64 LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred ecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 7999999999876 33456689999999855444
No 65
>PF14369 zf-RING_3: zinc-finger
Probab=59.63 E-value=7 Score=26.34 Aligned_cols=22 Identities=36% Similarity=0.910 Sum_probs=14.1
Q ss_pred ccccccccC------CCCCCccCCCccc
Q psy6453 117 VFCLSCAQA------PRSPPTCLRCGEG 138 (282)
Q Consensus 117 VFCy~CA~l------~k~~k~CprC~d~ 138 (282)
.+||.|.+. ..++..||.|+..
T Consensus 3 ywCh~C~~~V~~~~~~~~~~~CP~C~~g 30 (35)
T PF14369_consen 3 YWCHQCNRFVRIAPSPDSDVACPRCHGG 30 (35)
T ss_pred EeCccCCCEeEeCcCCCCCcCCcCCCCc
Confidence 567777743 2344459999875
No 66
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=59.54 E-value=6.7 Score=27.49 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=16.9
Q ss_pred ccccccChHhHHHHhhccC
Q psy6453 165 CKRTYLSQRDLMALGRHLG 183 (282)
Q Consensus 165 CkRTYLSQRDLQAHInH~h 183 (282)
|++ +++..+|..|++-.|
T Consensus 8 C~~-~~~~~~L~~H~~~~H 25 (54)
T PF05605_consen 8 CGK-GFSESSLVEHCEDEH 25 (54)
T ss_pred CCC-ccCHHHHHHHHHhHC
Confidence 999 899999999999888
No 67
>KOG2660|consensus
Probab=59.18 E-value=1.6 Score=42.38 Aligned_cols=44 Identities=25% Similarity=0.565 Sum_probs=30.9
Q ss_pred ecccCCCceEEEEeecccccccccccccC-CCCCCccCCCcccee
Q psy6453 97 TCEKCEKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVT 140 (282)
Q Consensus 97 FCdkCdlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~ 140 (282)
-|..|+-=|+==-=++=|.|-||-+|..- -...+.||.|+..|-
T Consensus 17 tC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 17 TCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred ehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 35556554443344566999999999875 134788999998765
No 68
>PRK04023 DNA polymerase II large subunit; Validated
Probab=58.71 E-value=6.3 Score=43.46 Aligned_cols=96 Identities=23% Similarity=0.360 Sum_probs=52.7
Q ss_pred cccccccccccc----CCceeecccCCCCCcceeeccceeee--------------------ecccccCCcceecccCCC
Q psy6453 48 QIDMEADISQLE----APTFTTITRGPPKPMLSLRWDHTVHL--------------------IGEKVLNPIIHTCEKCEK 103 (282)
Q Consensus 48 ~~d~eadisqle----ap~ftt~~r~Ppe~mlrl~wd~kVnL--------------------IGEK~~np~iHFCdkCdl 103 (282)
.+++-..+|.++ |||.---+=|=||-...-.-.=.+|. -|.-....-..||+.|+.
T Consensus 555 ~~~~vn~~s~~~ir~ra~trIG~RmGRPEKa~~RkMkP~~h~LFPiG~~GG~~R~i~~A~~~~g~~eVEVg~RfCpsCG~ 634 (1121)
T PRK04023 555 VLEAVNELSGFEIRPKAPTRIGARMGRPEKAKERKMKPPVHVLFPIGNAGGSTRDINKAAKYKGTIEVEIGRRKCPSCGK 634 (1121)
T ss_pred HHHHHHHhCCcEEeccCCceeecccCCCcccccccCCCCCcccccccccCcccccHHHHHhcCCceeecccCccCCCCCC
Confidence 566666666665 77776655454543332222222221 111112223469999998
Q ss_pred ceEEEEeecccccccccccccCCCCCCccCCCccceeeeeEecCCcEEEcccCCcccc
Q psy6453 104 PIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHS 161 (282)
Q Consensus 104 PI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~ 161 (282)
.. .-.+|-+|-.......+|+.|...+.. +.|..||..-.
T Consensus 635 ~t---------~~frCP~CG~~Te~i~fCP~CG~~~~~---------y~CPKCG~El~ 674 (1121)
T PRK04023 635 ET---------FYRRCPFCGTHTEPVYRCPRCGIEVEE---------DECEKCGREPT 674 (1121)
T ss_pred cC---------CcccCCCCCCCCCcceeCccccCcCCC---------CcCCCCCCCCC
Confidence 84 336777777654556678887544432 44776666544
No 69
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=57.06 E-value=19 Score=24.21 Aligned_cols=39 Identities=26% Similarity=0.539 Sum_probs=29.0
Q ss_pred ccCCCccceeeeeEecCCcEEEcccCCccccCccccccccChHhHHHHh
Q psy6453 131 TCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALG 179 (282)
Q Consensus 131 ~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHI 179 (282)
.||+|+...+.++- ..-.|+.|. .|.-.++...+|++-+
T Consensus 1 ~CP~C~~~l~~~~~-~~~~id~C~---------~C~G~W~d~~el~~~~ 39 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-GDVEIDVCP---------SCGGIWFDAGELEKLL 39 (41)
T ss_pred CcCCCCcccceEEE-CCEEEEECC---------CCCeEEccHHHHHHHH
Confidence 49999997665555 445777887 5888888888887654
No 70
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=56.96 E-value=4.1 Score=27.76 Aligned_cols=31 Identities=29% Similarity=0.636 Sum_probs=17.2
Q ss_pred ceeccc--CCCceEEEEeecc-------cccccccccccC
Q psy6453 95 IHTCEK--CEKPIMIYGRMIP-------CRHVFCLSCAQA 125 (282)
Q Consensus 95 iHFCdk--CdlPI~IYGRmIP-------CKHVFCy~CA~l 125 (282)
+.+|+. |+..|.+-..... |++.||+.|-..
T Consensus 18 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 57 (64)
T PF01485_consen 18 IRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEP 57 (64)
T ss_dssp CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSE
T ss_pred ccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcc
Confidence 469987 9998887665544 777777777653
No 71
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=56.79 E-value=5.9 Score=24.60 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=6.1
Q ss_pred CCCCccCCCccc
Q psy6453 127 RSPPTCLRCGEG 138 (282)
Q Consensus 127 k~~k~CprC~d~ 138 (282)
...++|+.|..+
T Consensus 11 ~~~~fC~~CG~~ 22 (23)
T PF13240_consen 11 DDAKFCPNCGTP 22 (23)
T ss_pred CcCcchhhhCCc
Confidence 345555555543
No 72
>KOG4692|consensus
Probab=56.60 E-value=3 Score=41.88 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=34.4
Q ss_pred eecccCCCceEEEEeecccccccccccccC-CCCCCccCCCccceee
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVTR 141 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~r 141 (282)
.+|--|..||.. ..-||+|--||+|... --..|.|..|+-.|+.
T Consensus 424 lCpICyA~pi~A--vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 424 LCPICYAGPINA--VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cCcceecccchh--hccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 444445788875 6789999999999986 2345779999999987
No 73
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=56.39 E-value=6.5 Score=44.11 Aligned_cols=52 Identities=23% Similarity=0.491 Sum_probs=35.1
Q ss_pred eecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceeeeeEecCCcEEEcccCCccc
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARH 160 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~ 160 (282)
-.|++|+..+.. .||-+|-..-.....|+.|+..+..=|. +.. -|..||+--
T Consensus 668 rkCPkCG~~t~~---------~fCP~CGs~te~vy~CPsCGaev~~des---~a~-~CP~CGtpl 719 (1337)
T PRK14714 668 RRCPSCGTETYE---------NRCPDCGTHTEPVYVCPDCGAEVPPDES---GRV-ECPRCDVEL 719 (1337)
T ss_pred EECCCCCCcccc---------ccCcccCCcCCCceeCccCCCccCCCcc---ccc-cCCCCCCcc
Confidence 689999997532 2999998864345579999987663221 133 388887643
No 74
>KOG0287|consensus
Probab=56.26 E-value=3.6 Score=41.04 Aligned_cols=45 Identities=31% Similarity=0.677 Sum_probs=32.5
Q ss_pred ceecccCCCceEEEEeecccccccccccccC-CCCCCccCCCcccee
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVT 140 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~ 140 (282)
..-|-+|--=+.| --++||-|-||-=|.+- -+....||.|-..|+
T Consensus 23 lLRC~IC~eyf~i-p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 23 LLRCGICFEYFNI-PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHhHHHHHhcC-ceeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 4667777322221 23679999999999987 456788999987776
No 75
>KOG1814|consensus
Probab=55.69 E-value=3.3 Score=41.65 Aligned_cols=70 Identities=26% Similarity=0.359 Sum_probs=35.2
Q ss_pred ccccccCCceeecccCCCCCcceeeccceeeeecccccCCcceecccCCCc--eEEEEeecccccccccccccC
Q psy6453 54 DISQLEAPTFTTITRGPPKPMLSLRWDHTVHLIGEKVLNPIIHTCEKCEKP--IMIYGRMIPCRHVFCLSCAQA 125 (282)
Q Consensus 54 disqleap~ftt~~r~Ppe~mlrl~wd~kVnLIGEK~~np~iHFCdkCdlP--I~IYGRmIPCKHVFCy~CA~l 125 (282)
+++|.|+|.-+.+.+.+.+.... --++.=+..=++..+. .+-|.+|==- =.+--...||.||||.+|++-
T Consensus 145 i~~~~~~~~~~~~~~~~~sl~~~-Il~~deea~~~~F~~s-lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kd 216 (445)
T KOG1814|consen 145 IISQKEFPALIRQGESIDSLKKE-ILQFDEEATLEKFVNS-LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKD 216 (445)
T ss_pred cchhhhcccccccccChHHHHHH-HHhhhHHHHHHHHHhh-cccceeeehhhcCcceeeecccchHHHHHHHHH
Confidence 56777777777666666532110 0011001111222233 2334445211 113445689999999999875
No 76
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=55.22 E-value=8.3 Score=24.05 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=14.7
Q ss_pred cccccccChHhHHHHhhc
Q psy6453 164 GCKRTYLSQRDLMALGRH 181 (282)
Q Consensus 164 gCkRTYLSQRDLQAHInH 181 (282)
.|+|+| +...|+.|++.
T Consensus 7 ~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 7 ICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CCCCEE-CHHHHHHHHHh
Confidence 599999 88899999864
No 77
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=54.85 E-value=11 Score=27.03 Aligned_cols=39 Identities=33% Similarity=0.602 Sum_probs=28.3
Q ss_pred CCCccCCCccceeeeeEecCCcEEEcccCCccccCccccccccChHhHHHHhh
Q psy6453 128 SPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGR 180 (282)
Q Consensus 128 ~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHIn 180 (282)
+-++|+.|...+.+ ...+.+|.|..||. .-.||+.|=+|
T Consensus 27 TSq~C~~CG~~~~~---~~~~r~~~C~~Cg~-----------~~~rD~naA~N 65 (69)
T PF07282_consen 27 TSQTCPRCGHRNKK---RRSGRVFTCPNCGF-----------EMDRDVNAARN 65 (69)
T ss_pred CccCccCccccccc---ccccceEEcCCCCC-----------EECcHHHHHHH
Confidence 56779999998887 44788999996443 24577766555
No 78
>PRK12495 hypothetical protein; Provisional
Probab=54.72 E-value=6.5 Score=36.60 Aligned_cols=29 Identities=28% Similarity=0.686 Sum_probs=23.0
Q ss_pred ceecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceee
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTR 141 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~r 141 (282)
..+|+.|+.||- .+ .+..+|+.|...|.+
T Consensus 42 a~hC~~CG~PIp-----------------a~-pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGDPIF-----------------RH-DGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccCccc-----------------CC-CCeeECCCCCCcccc
Confidence 478999999997 12 477889999988874
No 79
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=54.35 E-value=3.9 Score=32.94 Aligned_cols=47 Identities=19% Similarity=0.547 Sum_probs=19.0
Q ss_pred ecccccCCcceecccCCCceEEEEeecccccccccccccC--CCCCCccCCCccceeeeeEe
Q psy6453 86 IGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTRVEPT 145 (282)
Q Consensus 86 IGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~rIEq~ 145 (282)
||-.+.--.+.-|..|.||+ |-.|+.. +.+.+.|+.|+.+-.|....
T Consensus 19 VGl~~~Ge~FVAC~eC~fPv-------------Cr~CyEYErkeg~q~CpqCkt~ykr~kgs 67 (80)
T PF14569_consen 19 VGLTENGEVFVACHECAFPV-------------CRPCYEYERKEGNQVCPQCKTRYKRHKGS 67 (80)
T ss_dssp --B-SSSSB--S-SSS------------------HHHHHHHHHTS-SB-TTT--B----TT-
T ss_pred cccCCCCCEEEEEcccCCcc-------------chhHHHHHhhcCcccccccCCCcccccCC
Confidence 44444455677899999986 6667665 46888899999877765543
No 80
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=53.89 E-value=15 Score=24.81 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=16.6
Q ss_pred ccCCCccceeeeeEecCCcEEEcccCCcc
Q psy6453 131 TCLRCGEGVTRVEPTGLGTVFMCTHGGAR 159 (282)
Q Consensus 131 ~CprC~d~V~rIEq~~lgsVFMCt~gg~r 159 (282)
+||.|...- -++. ...+-++|+.||.-
T Consensus 2 ~Cp~Cg~~~-~~~D-~~~g~~vC~~CG~V 28 (43)
T PF08271_consen 2 KCPNCGSKE-IVFD-PERGELVCPNCGLV 28 (43)
T ss_dssp SBTTTSSSE-EEEE-TTTTEEEETTT-BB
T ss_pred CCcCCcCCc-eEEc-CCCCeEECCCCCCE
Confidence 588898876 2333 43344499987753
No 81
>PRK07219 DNA topoisomerase I; Validated
Probab=53.20 E-value=29 Score=36.41 Aligned_cols=68 Identities=26% Similarity=0.482 Sum_probs=41.7
Q ss_pred ceecccCCCceEEEEeecccccccccccccCCC------CCCccCCCccceeeeeEecCCcEEEcccCCccccCcccccc
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPR------SPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRT 168 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k------~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v~gCkRT 168 (282)
..-|+.|+.+++.+++--...=..|..|..... ....|+.|...+.. .....|.++-|+. -+.|+.+
T Consensus 648 ~~~Cp~CG~~lvk~~~~r~~~~~~CP~C~~~~~~~~~~~~~~~CP~Cg~~l~~-k~gr~G~F~~Cs~------yp~C~~~ 720 (822)
T PRK07219 648 DEVCEKCGLPVIKILRGKQTFVVGCPDCEAEKEEEDPDEVIGPCPKCGGELAI-KQLKYGSFLGCTN------YPKCKYT 720 (822)
T ss_pred cCCCCCCCcceEEEeccCccccccCCCCCCCccccccccccccCCCCCCeeEE-EcCCCCCeeeCCC------CCCCCce
Confidence 467999999998874332211123667765421 23569999865542 3333577888983 4788755
Q ss_pred c
Q psy6453 169 Y 169 (282)
Q Consensus 169 Y 169 (282)
+
T Consensus 721 ~ 721 (822)
T PRK07219 721 L 721 (822)
T ss_pred e
Confidence 3
No 82
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=52.87 E-value=8.6 Score=34.08 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=21.1
Q ss_pred CCccCCCccceeeeeEec-CCcEEEcccCCccccC
Q psy6453 129 PPTCLRCGEGVTRVEPTG-LGTVFMCTHGGARHST 162 (282)
Q Consensus 129 ~k~CprC~d~V~rIEq~~-lgsVFMCt~gg~r~~v 162 (282)
+++|+.|--.-..|-.+. .=+|.+|..||+.+-.
T Consensus 13 ~~lC~~C~~~~~~i~ei~~~i~v~~C~~Cg~~~~~ 47 (236)
T PF04981_consen 13 DGLCPDCYLKRFDIIEIPDRIEVTICPKCGRYRIG 47 (236)
T ss_pred cccChHHhcccCCeeecCCccCceECCCCCCEECC
Confidence 345555554444554455 3489999988876654
No 83
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=52.81 E-value=6.2 Score=30.46 Aligned_cols=46 Identities=24% Similarity=0.520 Sum_probs=32.1
Q ss_pred eecccCCCceEEEEeecccccccccccccCCCCCCc-cCCCc-cceeeeeEec-CCcEEEcccCCc
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPT-CLRCG-EGVTRVEPTG-LGTVFMCTHGGA 158 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~-CprC~-d~V~rIEq~~-lgsVFMCt~gg~ 158 (282)
--|..|+..|.+. +...++ ||.|. ..|-|-+.+. +|..|.|..||-
T Consensus 10 ~~CtSCg~~i~p~-----------------e~~v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 10 PVCTSCGREIAPG-----------------ETAVKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCGF 58 (61)
T ss_pred ceeccCCCEeccC-----------------CceeEeeCCCCCceeeehhhhHHHcCCceECCCcCc
Confidence 4677777776441 122333 88888 7777888888 899999997764
No 84
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=52.75 E-value=14 Score=25.04 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=14.3
Q ss_pred ccCCCccceeeeeEecCCcEEEcccCCc
Q psy6453 131 TCLRCGEGVTRVEPTGLGTVFMCTHGGA 158 (282)
Q Consensus 131 ~CprC~d~V~rIEq~~lgsVFMCt~gg~ 158 (282)
+|+.|+..+..- .......|.|+.||.
T Consensus 2 FCp~Cg~~l~~~-~~~~~~~~vC~~Cg~ 28 (52)
T smart00661 2 FCPKCGNMLIPK-EGKEKRRFVCRKCGY 28 (52)
T ss_pred CCCCCCCccccc-cCCCCCEEECCcCCC
Confidence 566776644322 111123788887664
No 85
>KOG4275|consensus
Probab=52.11 E-value=2.5 Score=41.23 Aligned_cols=45 Identities=27% Similarity=0.596 Sum_probs=34.9
Q ss_pred ecccC-CCceEEEEeeccccc-ccccccccCCCCCCccCCCccceeeeeEec
Q psy6453 97 TCEKC-EKPIMIYGRMIPCRH-VFCLSCAQAPRSPPTCLRCGEGVTRVEPTG 146 (282)
Q Consensus 97 FCdkC-dlPI~IYGRmIPCKH-VFCy~CA~l~k~~k~CprC~d~V~rIEq~~ 146 (282)
.|-+| |-||-- ...+|.| |-|+.|.+ -++.||.|...|.||....
T Consensus 302 LC~ICmDaP~DC--vfLeCGHmVtCt~CGk---rm~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 302 LCAICMDAPRDC--VFLECGHMVTCTKCGK---RMNECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHhcCCcce--EEeecCcEEeehhhcc---ccccCchHHHHHHHHHhhh
Confidence 46666 566544 5789999 78999988 5679999999999887654
No 86
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=50.64 E-value=4.7 Score=29.42 Aligned_cols=41 Identities=20% Similarity=0.515 Sum_probs=17.4
Q ss_pred cccCCCceEEEEeec---ccccccccccccC--CCCCCccCCCccc
Q psy6453 98 CEKCEKPIMIYGRMI---PCRHVFCLSCAQA--PRSPPTCLRCGEG 138 (282)
Q Consensus 98 CdkCdlPI~IYGRmI---PCKHVFCy~CA~l--~k~~k~CprC~d~ 138 (282)
|+.|+-++-+.|+-+ +|..-+|..|+.- .++...||.|.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 344555554444322 4677889999764 2468999999865
No 87
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=49.85 E-value=24 Score=27.38 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCCccCCCccceeeeeEecCCcEEEcccCCccc
Q psy6453 128 SPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARH 160 (282)
Q Consensus 128 ~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~ 160 (282)
+.|-||.|...+..|+....=-.|.|.-||++-
T Consensus 5 ~lKPCPFCG~~~~~v~~~~g~~~v~C~~CgA~~ 37 (64)
T PRK09710 5 NVKPCPFCGCPSVTVKAISGYYRAKCNGCESRT 37 (64)
T ss_pred cccCCCCCCCceeEEEecCceEEEEcCCCCcCc
Confidence 567899999999999998654458899888763
No 88
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=48.76 E-value=18 Score=34.77 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=26.0
Q ss_pred CCcEEEcccCCccccCccccccccChHhHHHHhhccCC
Q psy6453 147 LGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGP 184 (282)
Q Consensus 147 lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h~ 184 (282)
.+.||+|.. |.+.|.++.+|+.|...+-.
T Consensus 45 ~~~lyiCe~---------Clky~~~~~~l~~H~~~C~~ 73 (290)
T PLN03238 45 CTKLYICEY---------CLKYMRKKKSLLRHLAKCDI 73 (290)
T ss_pred CCeEEEcCC---------CcchhCCHHHHHHHHHhCCC
Confidence 689999985 99999999999999986654
No 89
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=48.67 E-value=5.6 Score=28.24 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=23.7
Q ss_pred ceecccCCCceEEEEeecccccccccccccC-----CCCCCccCCCcc
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA-----PRSPPTCLRCGE 137 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l-----~k~~k~CprC~d 137 (282)
..-|+.....|.+=+|-.-|+|.-|+|=... .++.-.||.|+.
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence 3568888899999999999999999885433 233456888875
No 90
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=48.42 E-value=12 Score=23.61 Aligned_cols=26 Identities=15% Similarity=0.448 Sum_probs=16.0
Q ss_pred CccCCCccceeeeeEecCCcEEEcccC
Q psy6453 130 PTCLRCGEGVTRVEPTGLGTVFMCTHG 156 (282)
Q Consensus 130 k~CprC~d~V~rIEq~~lgsVFMCt~g 156 (282)
+.|+||...+.++.. ...+.|+|..|
T Consensus 2 ~~C~rC~~~~~~~~~-~~r~~~~C~rC 27 (30)
T PF06827_consen 2 EKCPRCWNYIEDIGI-NGRSTYLCPRC 27 (30)
T ss_dssp SB-TTT--BBEEEEE-TTEEEEE-TTT
T ss_pred CcCccCCCcceEeEe-cCCCCeECcCC
Confidence 579999999988877 34566778753
No 91
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=48.38 E-value=13 Score=24.22 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=18.6
Q ss_pred eeeeecccccCCcceecccCCCceEEEEeeccccccc
Q psy6453 82 TVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVF 118 (282)
Q Consensus 82 kVnLIGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVF 118 (282)
+|.+-++. .+.....|+ |..--. +-.||+|+.
T Consensus 2 ~V~i~~~~-~~~~~~~Cs-C~~~~~---~~~~CkHi~ 33 (40)
T PF04434_consen 2 QVTIDDER-VSIEQASCS-CPYFQF---RGGPCKHIV 33 (40)
T ss_pred EEEEcCCc-ccccccEee-CCCccc---cCCcchhHH
Confidence 44444332 233457888 764322 678999974
No 92
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=48.20 E-value=17 Score=29.61 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.0
Q ss_pred CccCCCccceeeeeEecCCcEEEcccCCccccC
Q psy6453 130 PTCLRCGEGVTRVEPTGLGTVFMCTHGGARHST 162 (282)
Q Consensus 130 k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v 162 (282)
-.||.|++..+.|.....-.--.|..||..++.
T Consensus 22 f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y~~~ 54 (99)
T PRK14892 22 FECPRCGKVSISVKIKKNIAIITCGNCGLYTEF 54 (99)
T ss_pred eECCCCCCeEeeeecCCCcceEECCCCCCccCE
Confidence 348888877776666666666788888887765
No 93
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1001|consensus
Probab=47.37 E-value=5.2 Score=41.49 Aligned_cols=43 Identities=23% Similarity=0.565 Sum_probs=32.0
Q ss_pred eecccCCCceEEEEeecccccccccccccC---CCCCCccCCCcccee
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQA---PRSPPTCLRCGEGVT 140 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l---~k~~k~CprC~d~V~ 140 (282)
++|..|-- .----+.+|.|.||++|-.. ......|+.|...+.
T Consensus 455 ~~c~ic~~--~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD--LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc--cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78888877 34445679999999999876 223446999987765
No 95
>KOG3993|consensus
Probab=46.74 E-value=14 Score=37.69 Aligned_cols=85 Identities=22% Similarity=0.285 Sum_probs=50.0
Q ss_pred cceeeeeEec---CCcEEEcccCCccccCccccccccChHhHHHHhhccCCCCCcccc-cccchhhhhcccCCc---eEe
Q psy6453 137 EGVTRVEPTG---LGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGPHPRLHRK-DHRLFRALVSGICPL---VVL 209 (282)
Q Consensus 137 d~V~rIEq~~---lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h~~p~~~~~-~~~~~~a~~~~~~p~---v~~ 209 (282)
+.|+.+|+.+ -++||.|.+ |.|+|--|.-|.-|.--.|..++++.. -+. ..+++.++ -.+
T Consensus 340 ae~~ea~rsg~dss~gi~~C~~---------C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f----~~s~~~~l~~~~~~ 406 (500)
T KOG3993|consen 340 AEVQEAERSGDDSSSGIFSCHT---------CGKKFRRQAYLRKHQLTHQRAPLAKEKAPKF----LLSRVIPLMHFNQA 406 (500)
T ss_pred hhhhhccccCCcccCceeecHH---------hhhhhHHHHHHHHhHHhhhccccchhcccCc----chhhcccccccccc
Confidence 4566666655 467999996 999999999999996655554444322 111 12222232 234
Q ss_pred cCCCCCCCccccCCccceeeeecCCCCcc
Q psy6453 210 SLRGSSIDDCMTGGPRLALSIIPGLTSLT 238 (282)
Q Consensus 210 ~~~~ss~~~~~~~~p~~~l~~~pg~~s~~ 238 (282)
..-.++++|++..+ +.-+-|+++++
T Consensus 407 ~a~h~~a~~~~g~~----vl~~a~sael~ 431 (500)
T KOG3993|consen 407 VATHSSASDSHGDE----VLYVAGSAELE 431 (500)
T ss_pred cccccccccccccc----eeeeecccccc
Confidence 55667777776543 22334555554
No 96
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK00420 hypothetical protein; Validated
Probab=46.44 E-value=15 Score=30.70 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=16.8
Q ss_pred eecccCCCceEEEEeecccccccccccccCCCCCCccCCCccce
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGV 139 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V 139 (282)
..|+.|+.|..- +.++...||.|+..+
T Consensus 24 ~~CP~Cg~pLf~-----------------lk~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 24 KHCPVCGLPLFE-----------------LKDGEVVCPVHGKVY 50 (112)
T ss_pred CCCCCCCCccee-----------------cCCCceECCCCCCee
Confidence 468888877653 124566677776633
No 98
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=46.27 E-value=17 Score=22.54 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=15.6
Q ss_pred cccccccChHhHHHHhh
Q psy6453 164 GCKRTYLSQRDLMALGR 180 (282)
Q Consensus 164 gCkRTYLSQRDLQAHIn 180 (282)
-|.++|-+...+..|++
T Consensus 8 ~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 8 LCNVTFTDEISVEAHLK 24 (35)
T ss_pred ccCCccCCHHHHHHHHC
Confidence 49999999999999988
No 99
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=46.23 E-value=5.1 Score=32.20 Aligned_cols=46 Identities=24% Similarity=0.737 Sum_probs=30.3
Q ss_pred ceecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceeeeeEecCCcEEEccc
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTH 155 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rIEq~~lgsVFMCt~ 155 (282)
.+.|-.|.-|+ |.++..+ +.|.+|.. .+|..|... ...+.+|+|..
T Consensus 54 ~~~C~~C~~~f---g~l~~~~-~~C~~C~~-----~VC~~C~~~------~~~~~~WlC~v 99 (118)
T PF02318_consen 54 ERHCARCGKPF---GFLFNRG-RVCVDCKH-----RVCKKCGVY------SKKEPIWLCKV 99 (118)
T ss_dssp CSB-TTTS-BC---SCTSTTC-EEETTTTE-----EEETTSEEE------TSSSCCEEEHH
T ss_pred CcchhhhCCcc---cccCCCC-CcCCcCCc-----cccCccCCc------CCCCCCEEChh
Confidence 47899999874 4555555 66777766 667777544 33678888885
No 100
>KOG1812|consensus
Probab=45.85 E-value=11 Score=36.25 Aligned_cols=33 Identities=27% Similarity=0.589 Sum_probs=22.1
Q ss_pred CcceecccCCCceEEEEe----ecccccccccccccC
Q psy6453 93 PIIHTCEKCEKPIMIYGR----MIPCRHVFCLSCAQA 125 (282)
Q Consensus 93 p~iHFCdkCdlPI~IYGR----mIPCKHVFCy~CA~l 125 (282)
.+..-|++|.+=|..++= +=-|+|-|||.|..-
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~ 340 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGD 340 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcc
Confidence 345789999999866542 112777777777743
No 101
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=45.32 E-value=13 Score=35.47 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=45.2
Q ss_pred cceeeccceeeeecccccCC---cceecccCCCc-eEEEEee---cccccccccccccC-CCCCCccCCCccceeeeeEe
Q psy6453 74 MLSLRWDHTVHLIGEKVLNP---IIHTCEKCEKP-IMIYGRM---IPCRHVFCLSCAQA-PRSPPTCLRCGEGVTRVEPT 145 (282)
Q Consensus 74 mlrl~wd~kVnLIGEK~~np---~iHFCdkCdlP-I~IYGRm---IPCKHVFCy~CA~l-~k~~k~CprC~d~V~rIEq~ 145 (282)
-|++.|..-...+-.+...+ .-++|+.|+-+ ..-..|+ -==++..|.-|.-. .-.-..|+.|.+. .+++-.
T Consensus 163 ALqv~wa~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~-~~l~y~ 241 (309)
T PRK03564 163 ALSLYWAQMAQQIPGKARAEYGEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS-GKLHYW 241 (309)
T ss_pred HHHHHHHHHHhhCCcccccccccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC-Cceeee
Confidence 35666665444332222222 24899999865 2222222 11378899999887 2335679999984 344432
Q ss_pred c------CCcEEEccc
Q psy6453 146 G------LGTVFMCTH 155 (282)
Q Consensus 146 ~------lgsVFMCt~ 155 (282)
. .-.+..|..
T Consensus 242 ~~~~~~~~~r~e~C~~ 257 (309)
T PRK03564 242 SLDSEQAAVKAESCGD 257 (309)
T ss_pred eecCCCcceEeeeccc
Confidence 2 124577775
No 102
>PLN02436 cellulose synthase A
Probab=44.83 E-value=13 Score=41.03 Aligned_cols=45 Identities=22% Similarity=0.558 Sum_probs=32.4
Q ss_pred ecccccCCcceecccCCCceEEEEeecccccccccccccC--CCCCCccCCCccceeeee
Q psy6453 86 IGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTRVE 143 (282)
Q Consensus 86 IGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~rIE 143 (282)
||-.++.-.+.-|..|+||+ |-.|+.. +.+.+.||.|+..-.|..
T Consensus 46 Vg~t~dGe~FVACn~C~fpv-------------Cr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 46 IELTVDGEPFVACNECAFPV-------------CRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred cCcCCCCCEEEeeccCCCcc-------------ccchhhhhhhcCCccCcccCCchhhcc
Confidence 45555555677788888886 5556555 468888999998887655
No 103
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=44.70 E-value=24 Score=32.16 Aligned_cols=32 Identities=19% Similarity=0.494 Sum_probs=23.9
Q ss_pred CCCccCCCccceeeeeEecCCcEEEcccCCccc
Q psy6453 128 SPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARH 160 (282)
Q Consensus 128 ~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~ 160 (282)
..+.|++|...|+++..-+ -+.|.|..|-...
T Consensus 234 ~g~pC~~Cg~~I~~~~~~g-R~ty~Cp~CQ~~~ 265 (269)
T PRK14811 234 EGQPCPRCGTPIEKIVVGG-RGTHFCPQCQPLR 265 (269)
T ss_pred CcCCCCcCCCeeEEEEECC-CCcEECCCCcCCC
Confidence 4678999999999877765 5667798765443
No 104
>KOG3800|consensus
Probab=44.69 E-value=9.2 Score=36.92 Aligned_cols=34 Identities=24% Similarity=0.568 Sum_probs=27.6
Q ss_pred eEEEEeecccccccccccccC--CCCCCccCCCcccee
Q psy6453 105 IMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVT 140 (282)
Q Consensus 105 I~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~ 140 (282)
++++.+ ||+|-.|-+|--. ..++..||.|+....
T Consensus 16 lk~~in--~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 16 LKLMIN--ECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred ceeeec--cccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 456666 9999999999876 678999999986543
No 105
>PLN02189 cellulose synthase
Probab=43.58 E-value=14 Score=40.66 Aligned_cols=45 Identities=24% Similarity=0.642 Sum_probs=32.1
Q ss_pred ecccccCCcceecccCCCceEEEEeecccccccccccccC--CCCCCccCCCccceeeee
Q psy6453 86 IGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTRVE 143 (282)
Q Consensus 86 IGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~rIE 143 (282)
||-....-.+.-|..|+||+ |-.|++. +.+.+.||.|+..-.|..
T Consensus 44 vg~~~~g~~fvaC~~C~fpv-------------Cr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 44 IGLTVDGDLFVACNECGFPV-------------CRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCcCCCCCEEEeeccCCCcc-------------ccchhhhhhhcCCccCcccCCchhhcc
Confidence 34344455567888888886 5566655 468888999998888665
No 106
>KOG2462|consensus
Probab=41.91 E-value=18 Score=34.72 Aligned_cols=82 Identities=20% Similarity=0.434 Sum_probs=47.4
Q ss_pred CcceecccCCCceEEEEee---------cccccc-cccccccCCC-------------CCCccCCCccceee-------e
Q psy6453 93 PIIHTCEKCEKPIMIYGRM---------IPCRHV-FCLSCAQAPR-------------SPPTCLRCGEGVTR-------V 142 (282)
Q Consensus 93 p~iHFCdkCdlPI~IYGRm---------IPCKHV-FCy~CA~l~k-------------~~k~CprC~d~V~r-------I 142 (282)
+.-+-|+.|++....+.-+ +==+++ -|-.|-+.-. -.=.|..|.....| |
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHi 207 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHI 207 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhccc
Confidence 4467788899988876621 100222 2444544310 11235556555443 1
Q ss_pred eEecCCcEEEcccCCccccCccccccccChHhHHHHhh-ccC
Q psy6453 143 EPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGR-HLG 183 (282)
Q Consensus 143 Eq~~lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHIn-H~h 183 (282)
-....|.=|.|. .|.|.|--...|.||++ |.+
T Consensus 208 RTHTGEKPF~C~---------hC~kAFADRSNLRAHmQTHS~ 240 (279)
T KOG2462|consen 208 RTHTGEKPFSCP---------HCGKAFADRSNLRAHMQTHSD 240 (279)
T ss_pred ccccCCCCccCC---------cccchhcchHHHHHHHHhhcC
Confidence 112245555565 59999999999999998 666
No 107
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=41.09 E-value=20 Score=36.15 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=25.6
Q ss_pred CCcEEEcccCCccccCccccccccChHhHHHHhhccCC
Q psy6453 147 LGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGP 184 (282)
Q Consensus 147 lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h~ 184 (282)
.+.||+|.+ |.+.|-++..|+.|...+..
T Consensus 195 ~~~lyiCe~---------Cl~y~~~~~~~~~H~~~C~~ 223 (450)
T PLN00104 195 CSKLYFCEF---------CLKFMKRKEQLQRHMKKCDL 223 (450)
T ss_pred CCeEEEchh---------hhhhhcCHHHHHHHHhcCCC
Confidence 578999985 99999999999999986664
No 108
>KOG1941|consensus
Probab=40.59 E-value=5.8 Score=40.25 Aligned_cols=80 Identities=25% Similarity=0.528 Sum_probs=57.3
Q ss_pred ceecccCCCceEEEE---eecccccccccccccC---CCCCCccCCCccceeeeeEec-CCcEEEcccCCccccCcccc-
Q psy6453 95 IHTCEKCEKPIMIYG---RMIPCRHVFCLSCAQA---PRSPPTCLRCGEGVTRVEPTG-LGTVFMCTHGGARHSTAGCK- 166 (282)
Q Consensus 95 iHFCdkCdlPI~IYG---RmIPCKHVFCy~CA~l---~k~~k~CprC~d~V~rIEq~~-lgsVFMCt~gg~r~~v~gCk- 166 (282)
-.||--|+--|-.+- -..||-|.|=..|+.. ++++.+||.|+..+..+.+.+ .|++-+=+. ...+|-
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vese-----st~~~vT 439 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESE-----STDRCVT 439 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccc-----ccccccc
Confidence 467888876665433 3579999999999873 689999999998888888666 788877654 234553
Q ss_pred -ccccChHhHHHHh
Q psy6453 167 -RTYLSQRDLMALG 179 (282)
Q Consensus 167 -RTYLSQRDLQAHI 179 (282)
..-++-++|+--+
T Consensus 440 aasTfntnSls~d~ 453 (518)
T KOG1941|consen 440 AASTFNTNSLSVDG 453 (518)
T ss_pred hhhhccccchhhhh
Confidence 2344666776654
No 109
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=40.53 E-value=17 Score=26.81 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=29.0
Q ss_pred ceecccCCCceEEEEeecccccccccccccC--CCCCCccCCCcccee
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVT 140 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~ 140 (282)
...|+.+.-...-= ...|+.|+|+.+|... .+....||.|+..+.
T Consensus 4 ~f~CpIt~~lM~dP-Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 4 EFLCPITGELMRDP-VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGB-TTTSSB-SSE-EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred ccCCcCcCcHhhCc-eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 35677776544332 3459999999999987 445788999987765
No 110
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=40.00 E-value=28 Score=23.67 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=11.0
Q ss_pred Ccceecc--cCCCceEE
Q psy6453 93 PIIHTCE--KCEKPIMI 107 (282)
Q Consensus 93 p~iHFCd--kCdlPI~I 107 (282)
+....|+ .|+..|..
T Consensus 16 ~~~~~CP~~~C~~~~~~ 32 (64)
T smart00647 16 PDLKWCPAPDCSAAIIV 32 (64)
T ss_pred CCccCCCCCCCcceEEe
Confidence 4567898 89887765
No 111
>KOG4185|consensus
Probab=39.91 E-value=11 Score=33.58 Aligned_cols=43 Identities=30% Similarity=0.645 Sum_probs=28.8
Q ss_pred ecccCCCceEEE-----EeecccccccccccccC--CCCCCccCCCccce
Q psy6453 97 TCEKCEKPIMIY-----GRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGV 139 (282)
Q Consensus 97 FCdkCdlPI~IY-----GRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V 139 (282)
-|.+|+.++.-- =|+.=|.|.||..||.- .++...||.|....
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 366666655322 23444999999999986 45556688887764
No 112
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=39.36 E-value=16 Score=40.36 Aligned_cols=47 Identities=21% Similarity=0.567 Sum_probs=34.2
Q ss_pred ecccccCCcceecccCCCceEEEEeecccccccccccccC--CCCCCccCCCccceeeeeEe
Q psy6453 86 IGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTRVEPT 145 (282)
Q Consensus 86 IGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~rIEq~ 145 (282)
||-.+....+.-|..|+||+ |-.|++. +.+.+.||.|+-.-.|..-+
T Consensus 27 vg~~~~Ge~FVAC~eC~FPV-------------CrpCYEYEr~eG~q~CPqCktrYkr~kgs 75 (1079)
T PLN02638 27 VGKTVDGEPFVACDVCAFPV-------------CRPCYEYERKDGNQSCPQCKTKYKRHKGS 75 (1079)
T ss_pred cCcCCCCCEEEEeccCCCcc-------------ccchhhhhhhcCCccCCccCCchhhhcCC
Confidence 44455555677788888886 6777766 46888899999888866533
No 113
>PTZ00064 histone acetyltransferase; Provisional
Probab=39.22 E-value=24 Score=36.63 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=26.5
Q ss_pred cCCcEEEcccCCccccCccccccccChHhHHHHhhccCC
Q psy6453 146 GLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGP 184 (282)
Q Consensus 146 ~lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h~ 184 (282)
..+.||+|.+ |.+.|-++..|+.|...+..
T Consensus 276 ~~d~LYICEf---------CLkY~~s~~~l~rH~~~C~~ 305 (552)
T PTZ00064 276 NVDTLHFCEY---------CLDFFCFEDELIRHLSRCQL 305 (552)
T ss_pred CCCeEEEccc---------hhhhhCCHHHHHHHHhcCCC
Confidence 4789999996 99999999999999986664
No 114
>KOG3002|consensus
Probab=39.19 E-value=11 Score=35.66 Aligned_cols=69 Identities=17% Similarity=0.442 Sum_probs=49.8
Q ss_pred ceecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceeeeeEec-----CCcEEEcccCCccccCccccccc
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRVEPTG-----LGTVFMCTHGGARHSTAGCKRTY 169 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rIEq~~-----lgsVFMCt~gg~r~~v~gCkRTY 169 (282)
+.-|+.|--+|.+=..==+=.|..|-+|.. +-.+.||-|...+..|-... -+.+++|.+ ..-||.++|
T Consensus 48 lleCPvC~~~l~~Pi~QC~nGHlaCssC~~--~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~-----~~~GC~~~~ 120 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPPIFQCDNGHLACSSCRT--KVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKN-----AKLGCTKSF 120 (299)
T ss_pred hccCchhhccCcccceecCCCcEehhhhhh--hhcccCCccccccccHHHHHHHHHHHhceecccc-----cccCCceee
Confidence 578999988887654443336999999995 24688999999998874443 356788984 445666655
Q ss_pred c
Q psy6453 170 L 170 (282)
Q Consensus 170 L 170 (282)
.
T Consensus 121 ~ 121 (299)
T KOG3002|consen 121 P 121 (299)
T ss_pred c
Confidence 3
No 115
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=38.94 E-value=27 Score=29.45 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=24.8
Q ss_pred CccCCCccceee---eeEecCCcEEEcccCCcccc
Q psy6453 130 PTCLRCGEGVTR---VEPTGLGTVFMCTHGGARHS 161 (282)
Q Consensus 130 k~CprC~d~V~r---IEq~~lgsVFMCt~gg~r~~ 161 (282)
-+||+|+..-+. |.......+-.|..||.++.
T Consensus 23 FtCp~Cghe~vs~ctvkk~~~~g~~~Cg~CGls~e 57 (104)
T COG4888 23 FTCPRCGHEKVSSCTVKKTVNIGTAVCGNCGLSFE 57 (104)
T ss_pred EecCccCCeeeeEEEEEecCceeEEEcccCcceEE
Confidence 359999987777 66666788889998888765
No 116
>PLN03239 histone acetyltransferase; Provisional
Probab=38.17 E-value=27 Score=34.32 Aligned_cols=26 Identities=8% Similarity=0.401 Sum_probs=23.8
Q ss_pred CCcEEEcccCCccccCccccccccChHhHHHHhhc
Q psy6453 147 LGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRH 181 (282)
Q Consensus 147 lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH 181 (282)
...||+|.. |.+.|.++..|+.|..+
T Consensus 103 ~~~lYiCE~---------Clky~~~~~~l~~H~~~ 128 (351)
T PLN03239 103 IDVLYVCEF---------SFGFFARKSELLRFQAK 128 (351)
T ss_pred CceEEEecc---------chhhhcCHHHHHHHHHh
Confidence 678999986 99999999999999876
No 117
>KOG0804|consensus
Probab=38.14 E-value=15 Score=37.62 Aligned_cols=69 Identities=25% Similarity=0.424 Sum_probs=45.1
Q ss_pred eecccCCCce---EEEEeecccccccccccccCCCCCCccCCCcccee-------eeeEec-CCcEEEcccCCccccCcc
Q psy6453 96 HTCEKCEKPI---MIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVT-------RVEPTG-LGTVFMCTHGGARHSTAG 164 (282)
Q Consensus 96 HFCdkCdlPI---~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~-------rIEq~~-lgsVFMCt~gg~r~~v~g 164 (282)
..|++|---. +-=.+-|+|-|.|=-.|-..- .+.+||.|.---+ .--.|. -+++++|-+|| +-|
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w-~~~scpvcR~~q~p~~ve~~~c~~c~~~~~LwicliCg----~vg 250 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW-WDSSCPVCRYCQSPSVVESSLCLACGCTEDLWICLICG----NVG 250 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhc-ccCcChhhhhhcCcchhhhhhhhhhcccccEEEEEEcc----cee
Confidence 4688885321 222367899999977777753 6777887754322 111223 58999999876 689
Q ss_pred ccccc
Q psy6453 165 CKRTY 169 (282)
Q Consensus 165 CkRTY 169 (282)
|+|+=
T Consensus 251 cgrY~ 255 (493)
T KOG0804|consen 251 CGRYK 255 (493)
T ss_pred ccccc
Confidence 99863
No 118
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=37.90 E-value=20 Score=23.93 Aligned_cols=25 Identities=32% Similarity=0.728 Sum_probs=12.6
Q ss_pred CccCCCccceeeeeEecCCcEEEcccCCc
Q psy6453 130 PTCLRCGEGVTRVEPTGLGTVFMCTHGGA 158 (282)
Q Consensus 130 k~CprC~d~V~rIEq~~lgsVFMCt~gg~ 158 (282)
..|+.|...-+ ...|.+|+|+.||.
T Consensus 3 p~Cp~C~se~~----y~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYT----YEDGELLVCPECGH 27 (30)
T ss_dssp ---TTT---------EE-SSSEEETTTTE
T ss_pred CCCCCCCCcce----eccCCEEeCCcccc
Confidence 46888877654 35799999998664
No 119
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=37.72 E-value=28 Score=26.14 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=21.6
Q ss_pred CCccCCCccceeeeeEecCCcEEEcccCCccc
Q psy6453 129 PPTCLRCGEGVTRVEPTGLGTVFMCTHGGARH 160 (282)
Q Consensus 129 ~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~ 160 (282)
...|+.|.+.+. ..+.|-+|..||+-|
T Consensus 5 ~~~C~~Cg~~~~-----~~dDiVvCp~Cgapy 31 (54)
T PF14446_consen 5 GCKCPVCGKKFK-----DGDDIVVCPECGAPY 31 (54)
T ss_pred CccChhhCCccc-----CCCCEEECCCCCCcc
Confidence 456888888875 568899999888876
No 120
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=37.61 E-value=64 Score=21.71 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=28.7
Q ss_pred ccCCCccceeeeeEecCCcEEEcccCCccccCccccccccChHhHHHHh
Q psy6453 131 TCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALG 179 (282)
Q Consensus 131 ~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHI 179 (282)
.|..|......-.....-..|.|.. ..+.+. +|...+++...|+..|
T Consensus 7 ~C~~CG~~m~~~~~~~~~~yy~C~~-~~~~~~-~C~~~~i~~~~ie~~v 53 (58)
T PF13408_consen 7 RCGHCGSKMTRRKRKGKYRYYRCSN-RRRKGK-GCPNKSIREEEIEEAV 53 (58)
T ss_pred EcccCCcEeEEEECCCCceEEEcCC-CcCCCC-CCCCCEeCHHHHHHHH
Confidence 4666666655533333346788883 222222 6998899998888765
No 121
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.35 E-value=15 Score=36.23 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=30.1
Q ss_pred eecccCCCce--EEEEeecccccccccccccC-CC-CCCccCCCccce
Q psy6453 96 HTCEKCEKPI--MIYGRMIPCRHVFCLSCAQA-PR-SPPTCLRCGEGV 139 (282)
Q Consensus 96 HFCdkCdlPI--~IYGRmIPCKHVFCy~CA~l-~k-~~k~CprC~d~V 139 (282)
.-|.+|---+ .=..|..||+|+|=-.|... -. -...||-|+..|
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 5577773222 22468899999999999765 11 235699998765
No 122
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=37.29 E-value=25 Score=30.35 Aligned_cols=38 Identities=34% Similarity=0.630 Sum_probs=23.5
Q ss_pred eecccccCCcceecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceeeee
Q psy6453 85 LIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRVE 143 (282)
Q Consensus 85 LIGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rIE 143 (282)
+-|-|-++ +-|++|+.|..- +.+.-+||.|...++-++
T Consensus 21 l~GAkML~---~hCp~Cg~PLF~------------------KdG~v~CPvC~~~~~~v~ 58 (131)
T COG1645 21 LQGAKMLA---KHCPKCGTPLFR------------------KDGEVFCPVCGYREVVVE 58 (131)
T ss_pred HhhhHHHH---hhCcccCCccee------------------eCCeEECCCCCceEEEee
Confidence 33444444 668888888754 246666777776555444
No 123
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=37.17 E-value=20 Score=40.44 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=25.0
Q ss_pred eecccCCCceEEEEeecccccccccccccCC----CCCCccCCCccceeeeeE
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQAP----RSPPTCLRCGEGVTRVEP 144 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~----k~~k~CprC~d~V~rIEq 144 (282)
.||++|+-+-.. +.+|.+|-..- .+...|+.|+.++.....
T Consensus 680 ~fCP~CGs~te~--------vy~CPsCGaev~~des~a~~CP~CGtplv~~~~ 724 (1337)
T PRK14714 680 NRCPDCGTHTEP--------VYVCPDCGAEVPPDESGRVECPRCDVELTPYQR 724 (1337)
T ss_pred ccCcccCCcCCC--------ceeCccCCCccCCCccccccCCCCCCcccccce
Confidence 488888877532 34677776642 113468888877665444
No 124
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=37.17 E-value=5.1 Score=38.48 Aligned_cols=47 Identities=30% Similarity=0.719 Sum_probs=32.8
Q ss_pred ecccCCCce----EEEEeecc-cccccccccccC--CCCCCccC--CCccceeeee
Q psy6453 97 TCEKCEKPI----MIYGRMIP-CRHVFCLSCAQA--PRSPPTCL--RCGEGVTRVE 143 (282)
Q Consensus 97 FCdkCdlPI----~IYGRmIP-CKHVFCy~CA~l--~k~~k~Cp--rC~d~V~rIE 143 (282)
-|+.|---+ -|.-=++| |+|-+|-+|.-- ..+...|| .|+..+.++.
T Consensus 12 ~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 12 RCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred cCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 577774321 12233589 999999999754 67889999 9998665543
No 125
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=36.05 E-value=38 Score=32.06 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=23.1
Q ss_pred CCCccCCCccceeeeeEecCCcEEEcccC
Q psy6453 128 SPPTCLRCGEGVTRVEPTGLGTVFMCTHG 156 (282)
Q Consensus 128 ~~k~CprC~d~V~rIEq~~lgsVFMCt~g 156 (282)
...-|++|...|.++..-.+++. .|.+|
T Consensus 244 ~GepC~~CGt~I~k~~~~gR~t~-~CP~C 271 (273)
T COG0266 244 AGEPCRRCGTPIEKIKLGGRSTF-YCPVC 271 (273)
T ss_pred CCCCCCccCCEeEEEEEcCCcCE-eCCCC
Confidence 37889999999999998888775 48764
No 126
>PRK14873 primosome assembly protein PriA; Provisional
Probab=35.91 E-value=33 Score=35.51 Aligned_cols=19 Identities=21% Similarity=0.628 Sum_probs=10.3
Q ss_pred eecccccCCcceecccCCCc
Q psy6453 85 LIGEKVLNPIIHTCEKCEKP 104 (282)
Q Consensus 85 LIGEK~~np~iHFCdkCdlP 104 (282)
+++.+.--| ...|..|+.+
T Consensus 374 ~lnRrGyap-~l~C~~Cg~~ 392 (665)
T PRK14873 374 QVPRRGYVP-SLACARCRTP 392 (665)
T ss_pred EecCCCCCC-eeEhhhCcCe
Confidence 556666444 4555555543
No 127
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=35.79 E-value=20 Score=26.42 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=5.9
Q ss_pred CCcEEEcccCCcc
Q psy6453 147 LGTVFMCTHGGAR 159 (282)
Q Consensus 147 lgsVFMCt~gg~r 159 (282)
...-.-|++||+|
T Consensus 21 ~~~~irCp~Cg~r 33 (49)
T COG1996 21 ETRGIRCPYCGSR 33 (49)
T ss_pred ccCceeCCCCCcE
Confidence 3344445554443
No 128
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=35.77 E-value=28 Score=31.60 Aligned_cols=63 Identities=24% Similarity=0.385 Sum_probs=29.9
Q ss_pred eecccCCCc-eEEEEeecc---cccccccccccC-CCCCCccCCCcccee-e-----eeEecCCcEEEcccCCc
Q psy6453 96 HTCEKCEKP-IMIYGRMIP---CRHVFCLSCAQA-PRSPPTCLRCGEGVT-R-----VEPTGLGTVFMCTHGGA 158 (282)
Q Consensus 96 HFCdkCdlP-I~IYGRmIP---CKHVFCy~CA~l-~k~~k~CprC~d~V~-r-----IEq~~lgsVFMCt~gg~ 158 (282)
..|+.|+-+ .+-+.+-=. =++.+|.-|.-. .-.-..|+.|.+.=. + +|....-.|+.|..|++
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~ 246 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGS 246 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTE
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccc
Confidence 799999866 433333322 489999999876 223456999987532 2 23333567899997543
No 129
>PHA00626 hypothetical protein
Probab=35.34 E-value=36 Score=26.26 Aligned_cols=32 Identities=19% Similarity=0.552 Sum_probs=24.4
Q ss_pred ccCCCcc-ceeeeeEecC-CcEEEcccCCccccC
Q psy6453 131 TCLRCGE-GVTRVEPTGL-GTVFMCTHGGARHST 162 (282)
Q Consensus 131 ~CprC~d-~V~rIEq~~l-gsVFMCt~gg~r~~v 162 (282)
.||.|.. .|.+-..+.. ...|.|.-||-++..
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCCDCGYNDSK 35 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcCCCCCeech
Confidence 5999998 4887777774 789999977766543
No 130
>KOG0802|consensus
Probab=34.59 E-value=8 Score=38.28 Aligned_cols=43 Identities=26% Similarity=0.569 Sum_probs=32.5
Q ss_pred ceecccCCCceEE----EEeecccccccccccccC-CCCCCccCCCcc
Q psy6453 95 IHTCEKCEKPIMI----YGRMIPCRHVFCLSCAQA-PRSPPTCLRCGE 137 (282)
Q Consensus 95 iHFCdkCdlPI~I----YGRmIPCKHVFCy~CA~l-~k~~k~CprC~d 137 (282)
.-.|.+|-=...- --+..||-|+|+-.|-+. -+.+++||.|.-
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchh
Confidence 4678878544333 257789999999999987 235889999987
No 131
>PRK10445 endonuclease VIII; Provisional
Probab=34.58 E-value=38 Score=30.78 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=21.9
Q ss_pred CCCccCCCccceeeeeEecCCcEEEcccC
Q psy6453 128 SPPTCLRCGEGVTRVEPTGLGTVFMCTHG 156 (282)
Q Consensus 128 ~~k~CprC~d~V~rIEq~~lgsVFMCt~g 156 (282)
..+.|++|..+|+++..-++ +.|.|..|
T Consensus 234 ~g~~Cp~Cg~~I~~~~~~gR-~t~~CP~C 261 (263)
T PRK10445 234 DGEACERCGGIIEKTTLSSR-PFYWCPGC 261 (263)
T ss_pred CCCCCCCCCCEeEEEEECCC-CcEECCCC
Confidence 46789999999998888664 55778853
No 132
>KOG2613|consensus
Probab=34.49 E-value=9.1 Score=38.98 Aligned_cols=42 Identities=29% Similarity=0.640 Sum_probs=24.9
Q ss_pred cceecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceeee-eEec-CCcEEEccc
Q psy6453 94 IIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRV-EPTG-LGTVFMCTH 155 (282)
Q Consensus 94 ~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rI-Eq~~-lgsVFMCt~ 155 (282)
++.+|. |+.||- |=--.+|.+|-+. -+.| |-.. .-+|++|..
T Consensus 14 ~ILCCe-CGvpi~------Pn~anMC~~Clrs-------------~VDITegipr~~~i~~Cr~ 57 (502)
T KOG2613|consen 14 TILCCE-CGVPIE------PNPANMCVDCLRS-------------EVDITEGIPRQATISFCRE 57 (502)
T ss_pred EEEEec-CCCcCC------CchHHHHHHHhhe-------------eeehhcCCcchhhhhhccc
Confidence 466666 999986 3333455555553 2333 3333 478999984
No 133
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=34.43 E-value=43 Score=31.98 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=43.8
Q ss_pred ceeeccceeeeecccccCC---cceecccCCCce-EEEEee----cccccccccccccC-CCCCCccCCCccceeeeeEe
Q psy6453 75 LSLRWDHTVHLIGEKVLNP---IIHTCEKCEKPI-MIYGRM----IPCRHVFCLSCAQA-PRSPPTCLRCGEGVTRVEPT 145 (282)
Q Consensus 75 lrl~wd~kVnLIGEK~~np---~iHFCdkCdlPI-~IYGRm----IPCKHVFCy~CA~l-~k~~k~CprC~d~V~rIEq~ 145 (282)
|++.|..-...+-.+...+ .-++|+.|+-+= .-..|. -==++.+|.-|.-. .-.-..|+.|.+. ..++-.
T Consensus 161 Lq~~~~~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~-~~l~y~ 239 (305)
T TIGR01562 161 LQVAWAHWALGLEGGAVVETRESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES-KHLAYL 239 (305)
T ss_pred HHHHHHHHHHhCCccccCcccCCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC-CceeeE
Confidence 4555655444333222111 135999998653 222222 12367889999876 2335679999986 344433
Q ss_pred cCC--------cEEEccc
Q psy6453 146 GLG--------TVFMCTH 155 (282)
Q Consensus 146 ~lg--------sVFMCt~ 155 (282)
..+ .+..|..
T Consensus 240 ~~e~~~~~~~~r~e~C~~ 257 (305)
T TIGR01562 240 SLEHDAEKAVLKAETCDS 257 (305)
T ss_pred eecCCCCCcceEEeeccc
Confidence 321 3567764
No 134
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=34.29 E-value=67 Score=21.80 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=23.8
Q ss_pred CccCCCccceeeeeEecCCcEEEcccCCccccCcccccccc
Q psy6453 130 PTCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYL 170 (282)
Q Consensus 130 k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v~gCkRTYL 170 (282)
..||.|... ..+.....|.++-|+- -+.|+-|.-
T Consensus 2 ~~CP~Cg~~-lv~r~~k~g~F~~Cs~------yP~C~~~~~ 35 (39)
T PF01396_consen 2 EKCPKCGGP-LVLRRGKKGKFLGCSN------YPECKYTEP 35 (39)
T ss_pred cCCCCCCce-eEEEECCCCCEEECCC------CCCcCCeEe
Confidence 579999944 4455555779999993 478886653
No 135
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=34.17 E-value=38 Score=34.31 Aligned_cols=107 Identities=23% Similarity=0.370 Sum_probs=74.9
Q ss_pred ccCCCCCcceeeccceeeeecccccCCcceecccCCCceEEEEeecccccccccccccC---CCCCCccCCCccceeeee
Q psy6453 67 TRGPPKPMLSLRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA---PRSPPTCLRCGEGVTRVE 143 (282)
Q Consensus 67 ~r~Ppe~mlrl~wd~kVnLIGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l---~k~~k~CprC~d~V~rIE 143 (282)
+|--+.+-|.+..+..-..--+-+.+- -.|-+|.--|. |.-..||-|-.|--||.- .-.++.|+.|.-.-..|-
T Consensus 35 rRkqkKNnlsaEPnlttsSaddtDEen--~~C~ICA~~~T-Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 35 RRKQKKNNLSAEPNLTTSSADDTDEEN--MNCQICAGSTT-YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred hhhccccccccCCcccccccccccccc--ceeEEecCCce-EEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 456677778888886666666666554 67999988764 778889999999999853 224678999864433322
Q ss_pred Eec------------------CCcE---------------EEcccCCccccCccccccccChHhHHHHhhccC
Q psy6453 144 PTG------------------LGTV---------------FMCTHGGARHSTAGCKRTYLSQRDLMALGRHLG 183 (282)
Q Consensus 144 q~~------------------lgsV---------------FMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h 183 (282)
-+. .|-+ |-|. ..-|-++--+..+|..|.+-.|
T Consensus 112 fT~~~~~DI~D~~~~k~~~EK~GI~y~~E~v~~E~~~LL~F~CP-------~skc~~~C~~~k~lk~H~K~~H 177 (493)
T COG5236 112 FTASSPADITDRRQWKGREEKVGIFYEGEDVRDEMEDLLSFKCP-------KSKCHRRCGSLKELKKHYKAQH 177 (493)
T ss_pred EecCCCCcchhHhhhcccccceeeeecchHHHHHHHHHHHhcCC-------chhhhhhhhhHHHHHHHHHhhc
Confidence 211 1212 6688 4889999889999999976444
No 136
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.01 E-value=43 Score=33.15 Aligned_cols=48 Identities=21% Similarity=0.420 Sum_probs=32.5
Q ss_pred cccccccccCCCCCCccCCCccceeeeeEecCCcEEEcccCCccccC----cccccccc
Q psy6453 116 HVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHST----AGCKRTYL 170 (282)
Q Consensus 116 HVFCy~CA~l~k~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v----~gCkRTYL 170 (282)
.+.|.+|-. .-.|+.|+...+- ...+....|.+||.++.. +.|+-..+
T Consensus 213 ~~~C~~Cg~----~~~C~~C~~~l~~---h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l 264 (505)
T TIGR00595 213 NLLCRSCGY----ILCCPNCDVSLTY---HKKEGKLRCHYCGYQEPIPKTCPQCGSEDL 264 (505)
T ss_pred eeEhhhCcC----ccCCCCCCCceEE---ecCCCeEEcCCCcCcCCCCCCCCCCCCCee
Confidence 456888877 5679999887652 124667789988888763 46665433
No 137
>KOG1785|consensus
Probab=33.59 E-value=16 Score=37.45 Aligned_cols=46 Identities=35% Similarity=0.792 Sum_probs=32.2
Q ss_pred eecccC---CCceEEEEeecccccccccccccC---CCCCCccCCCccceeeeeEe
Q psy6453 96 HTCEKC---EKPIMIYGRMIPCRHVFCLSCAQA---PRSPPTCLRCGEGVTRVEPT 145 (282)
Q Consensus 96 HFCdkC---dlPI~IYGRmIPCKHVFCy~CA~l---~k~~k~CprC~d~V~rIEq~ 145 (282)
-.|-+| ++-|+| =||.|..|-.|-.. +.+.+.||.|.-.|.--|+.
T Consensus 370 eLCKICaendKdvkI----EPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 370 ELCKICAENDKDVKI----EPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHhhccCCCccc----ccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 344444 455554 79999999999876 33467899998777654443
No 138
>PLN02400 cellulose synthase
Probab=33.46 E-value=29 Score=38.58 Aligned_cols=48 Identities=19% Similarity=0.542 Sum_probs=34.0
Q ss_pred ecccccCCcceecccCCCceEEEEeecccccccccccccC--CCCCCccCCCccceeeeeEec
Q psy6453 86 IGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTRVEPTG 146 (282)
Q Consensus 86 IGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~rIEq~~ 146 (282)
||-.+.--.+.-|..|+||+ |-.||+. +.+.+.||.|+-.-.|..-+.
T Consensus 46 VG~t~dGe~FVAC~eCaFPV-------------CRpCYEYERkeGnq~CPQCkTrYkR~Kgsp 95 (1085)
T PLN02400 46 VGVTETGDVFVACNECAFPV-------------CRPCYEYERKDGTQCCPQCKTRYRRHKGSP 95 (1085)
T ss_pred cCcCCCCCEEEEEccCCCcc-------------ccchhheecccCCccCcccCCccccccCCC
Confidence 45555555677788888886 6677766 467888999998888765333
No 139
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=33.14 E-value=41 Score=22.93 Aligned_cols=15 Identities=47% Similarity=0.995 Sum_probs=11.5
Q ss_pred CCCccCCCcc-ceeee
Q psy6453 128 SPPTCLRCGE-GVTRV 142 (282)
Q Consensus 128 ~~k~CprC~d-~V~rI 142 (282)
....||.|.. .++||
T Consensus 25 ~~~~CP~Cg~~~~~r~ 40 (42)
T PF09723_consen 25 DPVPCPECGSTEVRRV 40 (42)
T ss_pred CCCcCCCCCCCceEEe
Confidence 4667999998 77765
No 140
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=33.09 E-value=36 Score=20.61 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=15.4
Q ss_pred cccCCCceEE----EEeeccccccccccccc
Q psy6453 98 CEKCEKPIMI----YGRMIPCRHVFCLSCAQ 124 (282)
Q Consensus 98 CdkCdlPI~I----YGRmIPCKHVFCy~CA~ 124 (282)
|..|+.+|.- +-.+-=.+|.-|+.|..
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~ 32 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPECFKCSK 32 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccCCCCcc
Confidence 6677776643 12223366777777765
No 141
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=32.78 E-value=30 Score=22.31 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=12.3
Q ss_pred ccCCCccceeeeeEecCCcEEEcc
Q psy6453 131 TCLRCGEGVTRVEPTGLGTVFMCT 154 (282)
Q Consensus 131 ~CprC~d~V~rIEq~~lgsVFMCt 154 (282)
.||-|+..|.+.| .+-++.|+
T Consensus 1 ~CP~C~s~l~~~~---~ev~~~C~ 21 (28)
T PF03119_consen 1 TCPVCGSKLVREE---GEVDIRCP 21 (28)
T ss_dssp B-TTT--BEEE-C---CTTCEEE-
T ss_pred CcCCCCCEeEcCC---CCEeEECC
Confidence 5999999888554 47788888
No 142
>PLN02195 cellulose synthase A
Probab=32.68 E-value=28 Score=38.20 Aligned_cols=42 Identities=26% Similarity=0.714 Sum_probs=29.5
Q ss_pred ecccccCCcceecccCCCceEEEEeecccccccccccccC--CCCCCccCCCcccee
Q psy6453 86 IGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVT 140 (282)
Q Consensus 86 IGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~ 140 (282)
+|-......+.-|..|+||+ |-.|++. +.+.+.||.|+-.-.
T Consensus 16 ~~~~~~g~~fvaC~eC~~pv-------------CrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 16 VGVDSNGEAFVACHECSYPL-------------CKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cCcCCCCCeEEEeccCCCcc-------------ccchhhhhhhcCCccCCccCCccc
Confidence 34444444567899999986 6677766 467788999987665
No 143
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.55 E-value=13 Score=33.17 Aligned_cols=59 Identities=20% Similarity=0.449 Sum_probs=31.5
Q ss_pred cccccccCCCCCCccCCCccceeeeeEecCCcEEEcccCCccccC----ccccccccC-hHhHHHHhhccC
Q psy6453 118 FCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHST----AGCKRTYLS-QRDLMALGRHLG 183 (282)
Q Consensus 118 FCy~CA~l~k~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v----~gCkRTYLS-QRDLQAHInH~h 183 (282)
||-.|-. +....||.|+.+|.-= ...++||.= |..|.+ ..|++.|-- ++-|.|-....-
T Consensus 30 fC~kCG~--~tI~~Cp~C~~~IrG~--y~v~gv~~~---g~~~~~PsYC~~CGkpyPWt~~~L~aa~el~e 93 (158)
T PF10083_consen 30 FCSKCGA--KTITSCPNCSTPIRGD--YHVEGVFGL---GGHYEAPSYCHNCGKPYPWTENALEAANELIE 93 (158)
T ss_pred HHHHhhH--HHHHHCcCCCCCCCCc--eecCCeeee---CCCCCCChhHHhCCCCCchHHHHHHHHHHHHH
Confidence 4444444 3456799999998721 224555542 122333 357777753 455555544433
No 144
>KOG2747|consensus
Probab=32.44 E-value=29 Score=34.65 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=26.1
Q ss_pred CCcEEEcccCCccccCccccccccChHhHHHHhhccCC
Q psy6453 147 LGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGP 184 (282)
Q Consensus 147 lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h~ 184 (282)
...||||.. |.+++-|+.+||.|..-+.+
T Consensus 155 ~~~lYiCEf---------CLkY~~s~~~l~rH~~kC~~ 183 (396)
T KOG2747|consen 155 LDKLYICEF---------CLKYMKSRTSLQRHLKKCKL 183 (396)
T ss_pred CCeEEEehH---------HHhHhchHHHHHHHHHhcCC
Confidence 578999996 99999999999999997765
No 145
>PRK07220 DNA topoisomerase I; Validated
Probab=32.28 E-value=90 Score=32.62 Aligned_cols=59 Identities=22% Similarity=0.420 Sum_probs=33.3
Q ss_pred eecccCCCceEEE-----Eeecccccc-cccccccCCC------CCCccCCCccceeeeeEecC-CcEEEcc
Q psy6453 96 HTCEKCEKPIMIY-----GRMIPCRHV-FCLSCAQAPR------SPPTCLRCGEGVTRVEPTGL-GTVFMCT 154 (282)
Q Consensus 96 HFCdkCdlPI~IY-----GRmIPCKHV-FCy~CA~l~k------~~k~CprC~d~V~rIEq~~l-gsVFMCt 154 (282)
.-|++|+..+++. ++.+=|... -|-.-..+.+ ....|+.|+..+.++...+. .-++.|.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~~~~k~~~~g~~~~~~~Cp 661 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCEGYPECTFSLPLPKSGQIIVTDKVCEAHGLNHIRIINGGKRPWDLGCP 661 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcCCCCCCCceeeCCCCCccccCCCCCCCCCCceEEEEecCCccceeeCC
Confidence 5799999887753 345666542 1322222221 24679999876555443222 2267885
No 146
>KOG4172|consensus
Probab=32.27 E-value=6.2 Score=30.51 Aligned_cols=33 Identities=21% Similarity=0.610 Sum_probs=24.2
Q ss_pred ecccccc-cccccccC-CC-CCCccCCCccceeeee
Q psy6453 111 MIPCRHV-FCLSCAQA-PR-SPPTCLRCGEGVTRVE 143 (282)
Q Consensus 111 mIPCKHV-FCy~CA~l-~k-~~k~CprC~d~V~rIE 143 (282)
+.-|.|. +||+|+.- .+ ....||.|..+|+.|-
T Consensus 22 lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 22 LYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVI 57 (62)
T ss_pred HHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHH
Confidence 3347774 79999976 22 5567999999998763
No 147
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=32.23 E-value=34 Score=26.66 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=19.4
Q ss_pred CccCCCc-cceeeeeEec--CCcEEEcccCCccccCc
Q psy6453 130 PTCLRCG-EGVTRVEPTG--LGTVFMCTHGGARHSTA 163 (282)
Q Consensus 130 k~CprC~-d~V~rIEq~~--lgsVFMCt~gg~r~~v~ 163 (282)
-.||.|+ +..+.|+--. .-.+-.|..||..|...
T Consensus 23 F~CPfC~~~~sV~v~idkk~~~~~~~C~~Cg~~~~~~ 59 (81)
T PF05129_consen 23 FDCPFCNHEKSVSVKIDKKEGIGILSCRVCGESFQTK 59 (81)
T ss_dssp ---TTT--SS-EEEEEETTTTEEEEEESSS--EEEEE
T ss_pred EcCCcCCCCCeEEEEEEccCCEEEEEecCCCCeEEEc
Confidence 3499999 7777776655 45567899988877543
No 148
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=32.21 E-value=26 Score=38.72 Aligned_cols=45 Identities=22% Similarity=0.543 Sum_probs=32.2
Q ss_pred ecccccCCcceecccCCCceEEEEeecccccccccccccC--CCCCCccCCCccceeeee
Q psy6453 86 IGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTRVE 143 (282)
Q Consensus 86 IGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~rIE 143 (282)
||-.+.-..+.-|..|+||+ |-.|+.. +.+.+.||+|+..-.|..
T Consensus 25 vg~~~~Ge~FVAC~eC~fpv-------------Cr~cyeye~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 25 VGVKEDGQPFVACHVCGFPV-------------CKPCYEYERSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred cCcCCCCCEEEEeccCCCcc-------------ccchhhhhhhcCCccCCccCCchhhhc
Confidence 34444444577888899986 6667665 467888999998887644
No 149
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=31.27 E-value=55 Score=34.72 Aligned_cols=39 Identities=23% Similarity=0.714 Sum_probs=23.0
Q ss_pred ecccCCCceEEEEeecccccccccccccCCCCCCccCCCccc
Q psy6453 97 TCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEG 138 (282)
Q Consensus 97 FCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~ 138 (282)
-|+.||.+....-.- ...+|--|-....-...||.|...
T Consensus 446 ~Cp~Cd~~lt~H~~~---~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 446 ECPNCDSPLTLHKAT---GQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred cCCCCCcceEEecCC---CeeEeCCCCCCCCCCCCCCCCCCC
Confidence 356666665544333 455666676665556667777666
No 150
>KOG0825|consensus
Probab=30.79 E-value=23 Score=38.86 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=37.1
Q ss_pred ceecccCCCceE--EEEeecccccccccccccC-CCCCCccCCCccceeeeeEec
Q psy6453 95 IHTCEKCEKPIM--IYGRMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVTRVEPTG 146 (282)
Q Consensus 95 iHFCdkCdlPI~--IYGRmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~rIEq~~ 146 (282)
.-||+.|-+-.. ..+-=++|.|.||-.|... .+-..+|+.|.....+|....
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec
Confidence 457887754332 2345579999999999987 567889999987666555444
No 151
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=30.66 E-value=1.3e+02 Score=24.38 Aligned_cols=74 Identities=22% Similarity=0.410 Sum_probs=45.4
Q ss_pred cCCcceecccCCCceEEE----Eeecccccccccc-----cccCCCCCCccCCCccceeeeeEecCC-cEEEcccCCccc
Q psy6453 91 LNPIIHTCEKCEKPIMIY----GRMIPCRHVFCLS-----CAQAPRSPPTCLRCGEGVTRVEPTGLG-TVFMCTHGGARH 160 (282)
Q Consensus 91 ~np~iHFCdkCdlPI~IY----GRmIPCKHVFCy~-----CA~l~k~~k~CprC~d~V~rIEq~~lg-sVFMCt~gg~r~ 160 (282)
++....-|++|+-+.+++ |+++=|-+.=.=+ -+........|+.|............| .+|.|.-
T Consensus 13 ~~~~~~~Cp~Cg~~m~~~~~~~g~f~gCs~yP~C~~~~~~~~~~~~~~~~Cp~C~~~~~~~k~~~~~~~f~~~~~----- 87 (140)
T COG0551 13 DLKTGQICPKCGKNMVKKFGKYGIFLGCSNYPKCDYYEPEKAIAEKTGVKCPKCGKGLLVLKKGRFGKNFLGCSN----- 87 (140)
T ss_pred ccccCccCCcCCCeeEEEEccCCeEEEeCCCCCCCCCcccccccccCceeCCCCCCCceEEEeccCCceEEeecC-----
Confidence 344568899999987764 4454443332111 223334567799999855555544444 5666985
Q ss_pred cCcccccccc
Q psy6453 161 STAGCKRTYL 170 (282)
Q Consensus 161 ~v~gCkRTYL 170 (282)
.+.|+.+.-
T Consensus 88 -~Pkc~~~~~ 96 (140)
T COG0551 88 -YPKCRFTEK 96 (140)
T ss_pred -CCcCceeec
Confidence 788887753
No 152
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=30.56 E-value=48 Score=30.27 Aligned_cols=28 Identities=29% Similarity=0.621 Sum_probs=21.6
Q ss_pred CCCccCCCccceeeeeEecCCcEEEcccC
Q psy6453 128 SPPTCLRCGEGVTRVEPTGLGTVFMCTHG 156 (282)
Q Consensus 128 ~~k~CprC~d~V~rIEq~~lgsVFMCt~g 156 (282)
...-|++|...|+++..-.+ +.|.|..|
T Consensus 243 ~g~pCprCG~~I~~~~~~gR-~t~~CP~C 270 (272)
T PRK14810 243 TGEPCLNCKTPIRRVVVAGR-SSHYCPHC 270 (272)
T ss_pred CCCcCCCCCCeeEEEEECCC-ccEECcCC
Confidence 46789999999988777664 55678854
No 153
>KOG1815|consensus
Probab=30.54 E-value=32 Score=33.29 Aligned_cols=27 Identities=41% Similarity=0.972 Sum_probs=19.7
Q ss_pred eecccCCCceEEEE-ee------ccccccccccc
Q psy6453 96 HTCEKCEKPIMIYG-RM------IPCRHVFCLSC 122 (282)
Q Consensus 96 HFCdkCdlPI~IYG-Rm------IPCKHVFCy~C 122 (282)
.-|++|-.||---+ .+ -+|+|+||.-|
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~C 260 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVC 260 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceee
Confidence 34999999997544 22 25888888888
No 154
>PRK04023 DNA polymerase II large subunit; Validated
Probab=30.42 E-value=41 Score=37.53 Aligned_cols=62 Identities=24% Similarity=0.449 Sum_probs=41.6
Q ss_pred cCCcceecccCCCceEEEEe---e------------cccccccccccccCCCCCCccCCCccceeeeeEecCCcEEEccc
Q psy6453 91 LNPIIHTCEKCEKPIMIYGR---M------------IPCRHVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTH 155 (282)
Q Consensus 91 ~np~iHFCdkCdlPI~IYGR---m------------IPCKHVFCy~CA~l~k~~k~CprC~d~V~rIEq~~lgsVFMCt~ 155 (282)
-.|+.| .-|||-.+|= . ++=.--||-+|-..- ....|+.|... .+.++-|..
T Consensus 590 MkP~~h----~LFPiG~~GG~~R~i~~A~~~~g~~eVEVg~RfCpsCG~~t-~~frCP~CG~~--------Te~i~fCP~ 656 (1121)
T PRK04023 590 MKPPVH----VLFPIGNAGGSTRDINKAAKYKGTIEVEIGRRKCPSCGKET-FYRRCPFCGTH--------TEPVYRCPR 656 (1121)
T ss_pred CCCCCc----ccccccccCcccccHHHHHhcCCceeecccCccCCCCCCcC-CcccCCCCCCC--------CCcceeCcc
Confidence 346667 7889887762 2 223334888888753 45668888876 467889999
Q ss_pred CCccccCccc
Q psy6453 156 GGARHSTAGC 165 (282)
Q Consensus 156 gg~r~~v~gC 165 (282)
||+.-+..-|
T Consensus 657 CG~~~~~y~C 666 (1121)
T PRK04023 657 CGIEVEEDEC 666 (1121)
T ss_pred ccCcCCCCcC
Confidence 9886554333
No 155
>KOG2231|consensus
Probab=30.27 E-value=7.5 Score=40.84 Aligned_cols=51 Identities=22% Similarity=0.487 Sum_probs=34.1
Q ss_pred eEEEEeecccccccccccccCC---CCCCccCCCccceeeeeEec-----CCcEEEcccC
Q psy6453 105 IMIYGRMIPCRHVFCLSCAQAP---RSPPTCLRCGEGVTRVEPTG-----LGTVFMCTHG 156 (282)
Q Consensus 105 I~IYGRmIPCKHVFCy~CA~l~---k~~k~CprC~d~V~rIEq~~-----lgsVFMCt~g 156 (282)
-+.|-+|=+|.|-+|-.|.+.. ...+-|..|. ....||.+. .-.++||.+|
T Consensus 88 ~~~y~~~~~~~~~~C~~C~~~~~~~~~~~~~~~c~-~~~s~~~Lk~H~~~~H~~~~c~lC 146 (669)
T KOG2231|consen 88 KLTYTKLEACLHHSCHICDRRFRALYNKKECLHCT-EFKSVENLKNHMRDQHKLHLCSLC 146 (669)
T ss_pred ccHHHHHHHHHhhhcCccccchhhhcccCCCcccc-chhHHHHHHHHHHHhhhhhccccc
Confidence 4678899999999999999863 3467799993 333444333 2345555544
No 156
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=30.20 E-value=16 Score=36.30 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=32.6
Q ss_pred eecccCCCceEEEEeecccccccccccccC--CCCCCccCCCccc
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEG 138 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~ 138 (282)
+-|+.|..-..---|.-=|-|.||-.|... ..++..|+.|..+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccc
Confidence 678888876655555545789999999873 4588999999764
No 157
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=30.01 E-value=35 Score=23.28 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=6.8
Q ss_pred CCccCCCcccee
Q psy6453 129 PPTCLRCGEGVT 140 (282)
Q Consensus 129 ~k~CprC~d~V~ 140 (282)
...||.|...+.
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 345666666554
No 158
>PHA00732 hypothetical protein
Probab=29.79 E-value=34 Score=26.50 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=16.2
Q ss_pred ccccccccChHhHHHHhh
Q psy6453 163 AGCKRTYLSQRDLMALGR 180 (282)
Q Consensus 163 ~gCkRTYLSQRDLQAHIn 180 (282)
+.|.++|.+..+|+.|+.
T Consensus 5 ~~Cgk~F~s~s~Lk~H~r 22 (79)
T PHA00732 5 PICGFTTVTLFALKQHAR 22 (79)
T ss_pred CCCCCccCCHHHHHHHhh
Confidence 359999999999999986
No 159
>KOG2462|consensus
Probab=29.69 E-value=37 Score=32.60 Aligned_cols=43 Identities=26% Similarity=0.470 Sum_probs=27.4
Q ss_pred CCccCCCccceee------eeEecC----CcEEEcccCCccccCccccccccChHhHHHHhh
Q psy6453 129 PPTCLRCGEGVTR------VEPTGL----GTVFMCTHGGARHSTAGCKRTYLSQRDLMALGR 180 (282)
Q Consensus 129 ~k~CprC~d~V~r------IEq~~l----gsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHIn 180 (282)
--.|+.|...... =.|+++ -..|.|.+ |.|+|.|..-|+-||.
T Consensus 130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~---------C~K~YvSmpALkMHir 182 (279)
T KOG2462|consen 130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKY---------CGKVYVSMPALKMHIR 182 (279)
T ss_pred ceeccccccccccccccchhhcccccccccccccCCC---------CCceeeehHHHhhHhh
Confidence 3446667654432 233331 45666664 8888888888888887
No 160
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=29.65 E-value=20 Score=26.21 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=22.9
Q ss_pred ceecccCCCceEEEEeecccccccccccccC
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA 125 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l 125 (282)
...|+....|+.-=.+..-|.|+|..+....
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~ 41 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQ 41 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHH
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHH
Confidence 3689999999998889899999999998764
No 161
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=29.63 E-value=13 Score=31.51 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=5.7
Q ss_pred CCcceecccCC
Q psy6453 92 NPIIHTCEKCE 102 (282)
Q Consensus 92 np~iHFCdkCd 102 (282)
+.+...|+.|.
T Consensus 106 ~~~~Y~Cp~c~ 116 (158)
T TIGR00373 106 NNMFFICPNMC 116 (158)
T ss_pred CCCeEECCCCC
Confidence 34455555555
No 162
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=28.09 E-value=55 Score=29.95 Aligned_cols=28 Identities=18% Similarity=0.523 Sum_probs=21.5
Q ss_pred CCCccCCCccceeeeeEecCCcEEEcccC
Q psy6453 128 SPPTCLRCGEGVTRVEPTGLGTVFMCTHG 156 (282)
Q Consensus 128 ~~k~CprC~d~V~rIEq~~lgsVFMCt~g 156 (282)
..+-|++|...|+++..- .-+.|.|..|
T Consensus 253 ~g~pC~~Cg~~I~~~~~~-gR~t~~CP~C 280 (282)
T PRK13945 253 TGKPCRKCGTPIERIKLA-GRSTHWCPNC 280 (282)
T ss_pred CcCCCCcCCCeeEEEEEC-CCccEECCCC
Confidence 467899999999987664 4566779864
No 163
>KOG2114|consensus
Probab=27.86 E-value=29 Score=37.94 Aligned_cols=40 Identities=20% Similarity=0.515 Sum_probs=35.2
Q ss_pred eecccCCCceEEEEeecccccccccccccCCCCCCccCCCcc
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGE 137 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d 137 (282)
--|..|+.+.-+=-.-+-|.|.|=..|.. .+...||.|.-
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e--~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE--DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc--cCcccCCccch
Confidence 47999999888888888999999999998 57888999976
No 164
>KOG1571|consensus
Probab=27.80 E-value=16 Score=35.97 Aligned_cols=51 Identities=25% Similarity=0.556 Sum_probs=35.7
Q ss_pred cccCCcceecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceeee
Q psy6453 89 KVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRV 142 (282)
Q Consensus 89 K~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rI 142 (282)
+...+.---|.+|..--.- --.+||.|+-| |..-.+....||.|...|+.+
T Consensus 299 ~~~~~~p~lcVVcl~e~~~-~~fvpcGh~cc--ct~cs~~l~~CPvCR~rI~~~ 349 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKS-AVFVPCGHVCC--CTLCSKHLPQCPVCRQRIRLV 349 (355)
T ss_pred ccccCCCCceEEecCCccc-eeeecCCcEEE--chHHHhhCCCCchhHHHHHHH
Confidence 3334444678888765554 67899999976 665544566699999887643
No 165
>PHA03096 p28-like protein; Provisional
Probab=27.72 E-value=9.8 Score=35.76 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=32.1
Q ss_pred eecccCCCceE-------EEEeecccccccccccccC-------CCCCCccCCCccceeee
Q psy6453 96 HTCEKCEKPIM-------IYGRMIPCRHVFCLSCAQA-------PRSPPTCLRCGEGVTRV 142 (282)
Q Consensus 96 HFCdkCdlPI~-------IYGRmIPCKHVFCy~CA~l-------~k~~k~CprC~d~V~rI 142 (282)
.-|..|--.+. -||=+-=|+|+||..|.+. .+....|++|..-+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~~~v 239 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVFI 239 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHHHHH
Confidence 45777776665 4566778999999999884 23344466666666555
No 166
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=27.47 E-value=30 Score=21.85 Aligned_cols=27 Identities=33% Similarity=0.705 Sum_probs=7.9
Q ss_pred ecccCCCceE--EEEeecccccccccccc
Q psy6453 97 TCEKCEKPIM--IYGRMIPCRHVFCLSCA 123 (282)
Q Consensus 97 FCdkCdlPI~--IYGRmIPCKHVFCy~CA 123 (282)
.|+.|+.++. ...+-..|.-++..+||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 3666777765 34455555555555554
No 167
>KOG0311|consensus
Probab=27.05 E-value=12 Score=37.19 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=32.7
Q ss_pred eecccCCCceEEEEeecccccccccccccC--CCCCCccCCCccceee
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTR 141 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l--~k~~k~CprC~d~V~r 141 (282)
..|++|-=-|+----.-=|-|-||.+|.-. ..+.+.||-|......
T Consensus 44 v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 44 VICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 568888654443222334999999999875 5688899999876553
No 168
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=26.83 E-value=62 Score=29.40 Aligned_cols=28 Identities=25% Similarity=0.752 Sum_probs=21.2
Q ss_pred CCCccCCCccceeeeeEecCCcEEEcccC
Q psy6453 128 SPPTCLRCGEGVTRVEPTGLGTVFMCTHG 156 (282)
Q Consensus 128 ~~k~CprC~d~V~rIEq~~lgsVFMCt~g 156 (282)
..+-|++|...|+++..-+ -+.|.|..|
T Consensus 244 ~g~pC~~Cg~~I~~~~~~g-R~t~~CP~C 271 (274)
T PRK01103 244 EGEPCRRCGTPIEKIKQGG-RSTFFCPRC 271 (274)
T ss_pred CCCCCCCCCCeeEEEEECC-CCcEECcCC
Confidence 3577999999998866654 566779864
No 169
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.37 E-value=64 Score=29.42 Aligned_cols=28 Identities=21% Similarity=0.624 Sum_probs=21.2
Q ss_pred CCCccCCCccceeeeeEecCCcEEEcccC
Q psy6453 128 SPPTCLRCGEGVTRVEPTGLGTVFMCTHG 156 (282)
Q Consensus 128 ~~k~CprC~d~V~rIEq~~lgsVFMCt~g 156 (282)
..+-|++|...|+++..-+ -+.|.|..|
T Consensus 244 ~g~pC~~Cg~~I~~~~~~g-R~t~~CP~C 271 (272)
T TIGR00577 244 KGEPCRRCGTPIEKIKVGG-RGTHFCPQC 271 (272)
T ss_pred CCCCCCCCCCeeEEEEECC-CCCEECCCC
Confidence 4678999999999877654 566778853
No 170
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=26.09 E-value=18 Score=31.55 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=5.9
Q ss_pred CCcceecccCCC
Q psy6453 92 NPIIHTCEKCEK 103 (282)
Q Consensus 92 np~iHFCdkCdl 103 (282)
+.....|+.|+.
T Consensus 114 ~~~~Y~Cp~C~~ 125 (178)
T PRK06266 114 NNMFFFCPNCHI 125 (178)
T ss_pred CCCEEECCCCCc
Confidence 334555555553
No 171
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=25.95 E-value=23 Score=29.44 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=6.5
Q ss_pred CCcceecccCCC
Q psy6453 92 NPIIHTCEKCEK 103 (282)
Q Consensus 92 np~iHFCdkCdl 103 (282)
+.....|+.|+.
T Consensus 96 ~~~~Y~Cp~C~~ 107 (147)
T smart00531 96 NNAYYKCPNCQS 107 (147)
T ss_pred CCcEEECcCCCC
Confidence 344566666653
No 172
>PRK14973 DNA topoisomerase I; Provisional
Probab=25.32 E-value=87 Score=34.02 Aligned_cols=58 Identities=22% Similarity=0.405 Sum_probs=36.2
Q ss_pred eecccCCCceEEE----Eeeccccccccccccc---CC--------CCCCccCCCccceeeeeEecCCcEEE-ccc
Q psy6453 96 HTCEKCEKPIMIY----GRMIPCRHVFCLSCAQ---AP--------RSPPTCLRCGEGVTRVEPTGLGTVFM-CTH 155 (282)
Q Consensus 96 HFCdkCdlPI~IY----GRmIPCKHVFCy~CA~---l~--------k~~k~CprC~d~V~rIEq~~lgsVFM-Ct~ 155 (282)
.-|++|+.++.+. |+.+=|... .+|-. +. ..+..|+-|..++..+=..++..-|+ |..
T Consensus 589 ~~CP~CG~~l~ik~~k~gkFigCS~Y--p~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p~~~~~r~Gr~g~fl~CP~ 662 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQFIGCSGY--PDCTFNIGLPGTTWGWAIRTDEVCPIHHLNHVRLIRKGARPWDIGCPL 662 (936)
T ss_pred ccCCcccccceeecccCceeEECCCC--CCCCccccCCccccccCCCCCCCCCCCCCCceEEeecCCCcccccCcc
Confidence 5699999888754 444545432 22432 21 11357999999877776777655566 753
No 173
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=25.27 E-value=20 Score=33.77 Aligned_cols=41 Identities=29% Similarity=0.620 Sum_probs=25.8
Q ss_pred eecccCCCceEEEEeecccccccccccccCC-CCCCccCCCcc
Q psy6453 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQAP-RSPPTCLRCGE 137 (282)
Q Consensus 96 HFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~-k~~k~CprC~d 137 (282)
..|-+|-.-+.--. .--|.|.||..||.-+ +....|-.|..
T Consensus 197 F~C~iCKkdy~spv-vt~CGH~FC~~Cai~~y~kg~~C~~Cgk 238 (259)
T COG5152 197 FLCGICKKDYESPV-VTECGHSFCSLCAIRKYQKGDECGVCGK 238 (259)
T ss_pred eeehhchhhccchh-hhhcchhHHHHHHHHHhccCCcceecch
Confidence 56888865433221 2369999999999863 23344666654
No 174
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=25.24 E-value=20 Score=36.37 Aligned_cols=36 Identities=25% Similarity=0.588 Sum_probs=28.4
Q ss_pred eecccccccccccccC-CCCCCccCCCccceeeeeEe
Q psy6453 110 RMIPCRHVFCLSCAQA-PRSPPTCLRCGEGVTRVEPT 145 (282)
Q Consensus 110 RmIPCKHVFCy~CA~l-~k~~k~CprC~d~V~rIEq~ 145 (282)
.-.||.|.+=+.|-+. ..-+++||.|..+|..=|..
T Consensus 314 KrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~~ 350 (491)
T COG5243 314 KRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSS 350 (491)
T ss_pred ccccccceeeHHHHHHHHHhccCCCcccCccccccCC
Confidence 4569999999999887 34678999999998755444
No 175
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.08 E-value=25 Score=31.22 Aligned_cols=22 Identities=27% Similarity=0.813 Sum_probs=16.6
Q ss_pred ccccccccCCCCCCccCCCcccee
Q psy6453 117 VFCLSCAQAPRSPPTCLRCGEGVT 140 (282)
Q Consensus 117 VFCy~CA~l~k~~k~CprC~d~V~ 140 (282)
+||-.|... ....||.|+.+|.
T Consensus 29 afcskcgea--ti~qcp~csasir 50 (160)
T COG4306 29 AFCSKCGEA--TITQCPICSASIR 50 (160)
T ss_pred HHHhhhchH--HHhcCCccCCccc
Confidence 577777763 3567999999885
No 176
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.29 E-value=66 Score=31.86 Aligned_cols=38 Identities=24% Similarity=0.620 Sum_probs=26.3
Q ss_pred cccCCCceEEEEeecccccccccccccCCCCCCccCCCccc
Q psy6453 98 CEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEG 138 (282)
Q Consensus 98 CdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~ 138 (282)
|+.|+.|....-.-. ...|--|.....-...||.|...
T Consensus 225 C~~C~~~l~~h~~~~---~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 225 CPNCDVSLTYHKKEG---KLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred CCCCCCceEEecCCC---eEEcCCCcCcCCCCCCCCCCCCC
Confidence 788888776542221 45788888765566789999875
No 177
>KOG0955|consensus
Probab=24.28 E-value=40 Score=37.30 Aligned_cols=40 Identities=25% Similarity=0.488 Sum_probs=23.1
Q ss_pred CcceecccCCCceEEEEeecccccccccccccCCCCCCccCCCccceeee
Q psy6453 93 PIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCGEGVTRV 142 (282)
Q Consensus 93 p~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~~k~CprC~d~V~rI 142 (282)
-.+.|||.|++ |.|--||.=--...++-.|.+|-..=++.
T Consensus 234 n~ivfCD~Cnl----------~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~ 273 (1051)
T KOG0955|consen 234 NVIVFCDGCNL----------AVHQECYGIPFIPEGQWLCRRCLQSPQRP 273 (1051)
T ss_pred ceEEEcCCCcc----------hhhhhccCCCCCCCCcEeehhhccCcCcc
Confidence 45899999997 55666666111134555555555444433
No 178
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.77 E-value=31 Score=22.12 Aligned_cols=19 Identities=37% Similarity=0.948 Sum_probs=10.4
Q ss_pred ccccccC-CCCCCccCCCcc
Q psy6453 119 CLSCAQA-PRSPPTCLRCGE 137 (282)
Q Consensus 119 Cy~CA~l-~k~~k~CprC~d 137 (282)
|-+|... ..+.+.|+.|.-
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CCCCcCCchhhcCcCCCCCC
Confidence 3344433 236677777764
No 179
>PRK05580 primosome assembly protein PriA; Validated
Probab=23.63 E-value=79 Score=32.46 Aligned_cols=46 Identities=22% Similarity=0.554 Sum_probs=29.4
Q ss_pred cccccccccCCCCCCccCCCccceeeeeEecCCcEEEcccCCccccC----cccccc
Q psy6453 116 HVFCLSCAQAPRSPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHST----AGCKRT 168 (282)
Q Consensus 116 HVFCy~CA~l~k~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v----~gCkRT 168 (282)
.+.|-+|-. .-.|+.|+....- ...+....|.+||.++.. +.|+..
T Consensus 381 ~~~C~~Cg~----~~~C~~C~~~l~~---h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGW----VAECPHCDASLTL---HRFQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred ceEhhhCcC----ccCCCCCCCceeE---ECCCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 456777766 4578888876642 124667778888877653 355444
No 180
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=23.63 E-value=67 Score=27.31 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=27.3
Q ss_pred cccCCCCCcceeeccceeeeecccccCCc--ceecccCCCce
Q psy6453 66 ITRGPPKPMLSLRWDHTVHLIGEKVLNPI--IHTCEKCEKPI 105 (282)
Q Consensus 66 ~~r~Ppe~mlrl~wd~kVnLIGEK~~np~--iHFCdkCdlPI 105 (282)
++|- |++.|||.|+=+-..+..+..... +.-|..|+-|-
T Consensus 67 l~~~-P~QvlRY~~gG~PLw~s~~~~~~~~~ip~C~~Cg~~R 107 (164)
T PF04194_consen 67 LSRN-PEQVLRYCRGGKPLWISSTPIPPESDIPKCENCGSPR 107 (164)
T ss_pred HhcC-CCeEEEECCCCeEEEecCCCCCccccCCCCccCCCcc
Confidence 4444 689999999988888877665432 45677776553
No 181
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=23.53 E-value=33 Score=33.39 Aligned_cols=40 Identities=20% Similarity=0.530 Sum_probs=0.0
Q ss_pred cCCcceecccCCCceEEEEeecccccccccccccC---------CCCCCccCCCc
Q psy6453 91 LNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA---------PRSPPTCLRCG 136 (282)
Q Consensus 91 ~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l---------~k~~k~CprC~ 136 (282)
.+...-||..|+.|+- |=.+..|.+|+.. .-.-..|..|+
T Consensus 2 ~~~~~~~C~~CGr~~~------~~~~~lC~dC~~~~~~~~~ip~~~~v~~C~~Cg 50 (355)
T COG1499 2 QDASTILCVRCGRSVD------PLIDGLCGDCYVETTPLIEIPDEVNVEVCRHCG 50 (355)
T ss_pred CCCcccEeccCCCcCc------hhhccccHHHHhccCccccCCCceEEEECCcCC
No 182
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=23.47 E-value=22 Score=23.94 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=15.4
Q ss_pred ceecccCCCceEEEEeecccccccccccccCCCC-CCccCCC
Q psy6453 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRS-PPTCLRC 135 (282)
Q Consensus 95 iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l~k~-~k~CprC 135 (282)
+.+|+.|++ +-|..||.-...... +-.|-+|
T Consensus 4 ll~C~~C~v----------~VH~~CYGv~~~~~~~~W~C~~C 35 (36)
T PF13831_consen 4 LLFCDNCNV----------AVHQSCYGVSEVPDGDDWLCDRC 35 (36)
T ss_dssp EEE-SSS------------EEEHHHHT-SS--SS-----HHH
T ss_pred eEEeCCCCC----------cCChhhCCcccCCCCCcEECCcC
Confidence 678999986 458899988887433 3445554
No 183
>smart00575 ZnF_PMZ plant mutator transposase zinc finger.
Probab=23.30 E-value=21 Score=22.59 Aligned_cols=8 Identities=63% Similarity=1.514 Sum_probs=6.7
Q ss_pred cccccccc
Q psy6453 112 IPCRHVFC 119 (282)
Q Consensus 112 IPCKHVFC 119 (282)
|||.|++.
T Consensus 13 ipC~H~i~ 20 (28)
T smart00575 13 IPCRHALA 20 (28)
T ss_pred ccHHHHHH
Confidence 89999874
No 184
>KOG2186|consensus
Probab=23.24 E-value=19 Score=34.54 Aligned_cols=43 Identities=30% Similarity=0.527 Sum_probs=28.7
Q ss_pred ccCCCccceee--eeEecCCcEEEcccCCccccCccccccccChHhHHHHhh
Q psy6453 131 TCLRCGEGVTR--VEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGR 180 (282)
Q Consensus 131 ~CprC~d~V~r--IEq~~lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHIn 180 (282)
+|..|++.|.+ ||+ -.|+|+ |+-+.--+|.++|.- -|+.+|+.
T Consensus 5 tCnvCgEsvKKp~vek----H~srCr--n~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 5 TCNVCGESVKKPQVEK----HMSRCR--NAYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred ehhhhhhhccccchHH----HHHhcc--CCeeEEeeccccccc-chhhhhhh
Confidence 47778887764 444 334444 244444589999987 89999976
No 185
>PF10249 NDUFB10: NADH-ubiquinone oxidoreductase subunit 10; InterPro: IPR019377 NADH-ubiquinone oxidoreductase subunit 10 of (NDUFB10) is a member of a family of conserved proteins of up to 180 residues. It is one of the 41 protein subunits within the hydrophobic fraction of the NADH:ubiquinone oxidoreductase (complex I), a multiprotein complex located in the inner mitochondrial membrane whose main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. NDUFB10 is encoded in the nucleus.
Probab=23.09 E-value=46 Score=28.58 Aligned_cols=22 Identities=50% Similarity=1.011 Sum_probs=18.0
Q ss_pred cccCCccC---CCCCCccccccCCc
Q psy6453 238 TSKYPQYH---PRGSSIDDCMTGGP 259 (282)
Q Consensus 238 ~s~y~~y~---~~~~~~~~~~~~~~ 259 (282)
-.+|+||| .|--+||+|.++-+
T Consensus 18 ~~~~~yYH~~~rRVP~ideC~~~D~ 42 (128)
T PF10249_consen 18 RNKYPYYHRQFRRVPTIDECYTDDP 42 (128)
T ss_pred cCCCCccccccCCCCCccccCCCCH
Confidence 35789999 67889999998864
No 186
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=22.71 E-value=59 Score=32.67 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=27.9
Q ss_pred EecCCcEEEcccCCccccCccccccccChHhHHHHhhccCCC
Q psy6453 144 PTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLGPH 185 (282)
Q Consensus 144 q~~lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h~~ 185 (282)
......||+|.. |.+.|-|+..|+.|..-+-++
T Consensus 152 ~s~~d~vyICef---------ClkY~~s~~~~~rH~~kC~~~ 184 (395)
T COG5027 152 FSDLDIVYICEF---------CLKYYGSQTSLVRHRKKCSLQ 184 (395)
T ss_pred hcccceEEEhhh---------hHHHhcchhHHHHHHhcCcCc
Confidence 334789999995 999999999999999966653
No 187
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=22.46 E-value=1.2e+02 Score=20.23 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=10.2
Q ss_pred ccCCCccceeeeeEecCCcEEEcccCCc
Q psy6453 131 TCLRCGEGVTRVEPTGLGTVFMCTHGGA 158 (282)
Q Consensus 131 ~CprC~d~V~rIEq~~lgsVFMCt~gg~ 158 (282)
+||.|++... ++.-....+ .|..||.
T Consensus 3 FCp~C~nlL~-p~~~~~~~~-~C~~C~Y 28 (35)
T PF02150_consen 3 FCPECGNLLY-PKEDKEKRV-ACRTCGY 28 (35)
T ss_dssp BETTTTSBEE-EEEETTTTE-EESSSS-
T ss_pred eCCCCCccce-EcCCCccCc-CCCCCCC
Confidence 3444444432 333333333 5554443
No 188
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.26 E-value=57 Score=20.91 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=11.2
Q ss_pred CCccCCCccceeeeeEecCCcEEEcccCCc
Q psy6453 129 PPTCLRCGEGVTRVEPTGLGTVFMCTHGGA 158 (282)
Q Consensus 129 ~k~CprC~d~V~rIEq~~lgsVFMCt~gg~ 158 (282)
.++|++|..+.+.++ .|..-.|+.||.
T Consensus 3 ~rfC~~CG~~t~~~~---~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAP---GGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-S---SSS-EEESSSS-
T ss_pred CcccCcCCccccCCC---CcCEeECCCCcC
Confidence 355666666555432 355566665443
No 189
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=21.98 E-value=1.3e+02 Score=21.05 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=21.2
Q ss_pred CCccCCCccceeeeeEecCC-----cEEEcccCCc
Q psy6453 129 PPTCLRCGEGVTRVEPTGLG-----TVFMCTHGGA 158 (282)
Q Consensus 129 ~k~CprC~d~V~rIEq~~lg-----sVFMCt~gg~ 158 (282)
.+-||.|......++..... ....|..||.
T Consensus 3 LkPCPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 46699998888888876632 3344887665
No 190
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=21.53 E-value=89 Score=24.33 Aligned_cols=36 Identities=14% Similarity=0.456 Sum_probs=25.8
Q ss_pred ccCCCccceeeeeEec------CCcEEEcccCCccccCccccccccChHh
Q psy6453 131 TCLRCGEGVTRVEPTG------LGTVFMCTHGGARHSTAGCKRTYLSQRD 174 (282)
Q Consensus 131 ~CprC~d~V~rIEq~~------lgsVFMCt~gg~r~~v~gCkRTYLSQRD 174 (282)
.||.|.... +|.... .+..+-|+ +..|..||.....
T Consensus 3 ~CP~Cg~~a-~irtSr~~s~~~~~~Y~qC~-------N~eCg~tF~t~es 44 (72)
T PRK09678 3 HCPLCQHAA-HARTSRYITDTTKERYHQCQ-------NVNCSATFITYES 44 (72)
T ss_pred cCCCCCCcc-EEEEChhcChhhheeeeecC-------CCCCCCEEEEEEE
Confidence 588888776 454433 46678899 7899999976544
No 191
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.39 E-value=77 Score=20.30 Aligned_cols=15 Identities=40% Similarity=0.835 Sum_probs=10.2
Q ss_pred CCCccCCCccceeee
Q psy6453 128 SPPTCLRCGEGVTRV 142 (282)
Q Consensus 128 ~~k~CprC~d~V~rI 142 (282)
....||.|...++|+
T Consensus 25 ~~~~CP~Cg~~~~r~ 39 (41)
T smart00834 25 PLATCPECGGDVRRL 39 (41)
T ss_pred CCCCCCCCCCcceec
Confidence 345688888876654
No 192
>KOG1002|consensus
Probab=20.71 E-value=25 Score=37.20 Aligned_cols=74 Identities=31% Similarity=0.514 Sum_probs=47.7
Q ss_pred ceeecccC---CCCCcceeeccceeeeecccccCCcceecccCCCceEEEEeecccccccccccccC------CCCCCcc
Q psy6453 62 TFTTITRG---PPKPMLSLRWDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQA------PRSPPTC 132 (282)
Q Consensus 62 ~ftt~~r~---Ppe~mlrl~wd~kVnLIGEK~~np~iHFCdkCdlPI~IYGRmIPCKHVFCy~CA~l------~k~~k~C 132 (282)
.|+-|+|- -+-|-|-+. +-..|+.+|+-. ..-|-.|+-|..-|.- --|-|+||--|.+. ++..-+|
T Consensus 504 IF~LitRmRQ~aDHP~LVl~-S~~~n~~~enk~---~~~C~lc~d~aed~i~-s~ChH~FCrlCi~eyv~~f~~~~nvtC 578 (791)
T KOG1002|consen 504 IFTLITRMRQAADHPDLVLY-SANANLPDENKG---EVECGLCHDPAEDYIE-SSCHHKFCRLCIKEYVESFMENNNVTC 578 (791)
T ss_pred HHHHHHHHHHhccCcceeee-hhhcCCCccccC---ceeecccCChhhhhHh-hhhhHHHHHHHHHHHHHhhhcccCCCC
Confidence 35555552 233333332 234556766554 4789999998877654 36999999999843 3445779
Q ss_pred CCCcccee
Q psy6453 133 LRCGEGVT 140 (282)
Q Consensus 133 prC~d~V~ 140 (282)
|-|...+.
T Consensus 579 P~C~i~Ls 586 (791)
T KOG1002|consen 579 PVCHIGLS 586 (791)
T ss_pred cccccccc
Confidence 99987654
No 193
>PHA00733 hypothetical protein
Probab=20.70 E-value=58 Score=26.95 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=18.2
Q ss_pred cccccccChHhHHHHhhccC
Q psy6453 164 GCKRTYLSQRDLMALGRHLG 183 (282)
Q Consensus 164 gCkRTYLSQRDLQAHInH~h 183 (282)
.|.++|-+...|..|+...|
T Consensus 104 ~CgK~F~~~~sL~~H~~~~h 123 (128)
T PHA00733 104 VCGKEFRNTDSTLDHVCKKH 123 (128)
T ss_pred CCCCccCCHHHHHHHHHHhc
Confidence 49999999999999998877
No 194
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.65 E-value=34 Score=27.84 Aligned_cols=30 Identities=27% Similarity=0.649 Sum_probs=21.7
Q ss_pred eecccccccccccccCCCCCCccCCCcccee
Q psy6453 110 RMIPCRHVFCLSCAQAPRSPPTCLRCGEGVT 140 (282)
Q Consensus 110 RmIPCKHVFCy~CA~l~k~~k~CprC~d~V~ 140 (282)
|+---.+-||-+||... -...||.|.-.++
T Consensus 23 ~ICtfEcTFCadCae~~-l~g~CPnCGGelv 52 (84)
T COG3813 23 RICTFECTFCADCAENR-LHGLCPNCGGELV 52 (84)
T ss_pred eEEEEeeehhHhHHHHh-hcCcCCCCCchhh
Confidence 33345789999999853 4678999976554
No 195
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=20.65 E-value=28 Score=28.51 Aligned_cols=21 Identities=38% Similarity=0.950 Sum_probs=18.0
Q ss_pred ccccccccccCCCCCCccCCCccc
Q psy6453 115 RHVFCLSCAQAPRSPPTCLRCGEG 138 (282)
Q Consensus 115 KHVFCy~CA~l~k~~k~CprC~d~ 138 (282)
+|+.|-.||. ....|..|..+
T Consensus 70 Yh~iC~~Ca~---~~~vCaKC~k~ 90 (92)
T PF10217_consen 70 YHVICDPCAK---ELKVCAKCGKP 90 (92)
T ss_pred HHHHHHHHHH---hhccCcccCCC
Confidence 7999999999 56889999764
No 196
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.54 E-value=1.4e+02 Score=20.36 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=16.3
Q ss_pred CccCCCccceeeeeEecCCcEEEcccC
Q psy6453 130 PTCLRCGEGVTRVEPTGLGTVFMCTHG 156 (282)
Q Consensus 130 k~CprC~d~V~rIEq~~lgsVFMCt~g 156 (282)
-.||.|... ++-.+.....|-|..|
T Consensus 19 ~~CP~Cg~~--~~~~~~~~~~~~C~~C 43 (46)
T PF12760_consen 19 FVCPHCGST--KHYRLKTRGRYRCKAC 43 (46)
T ss_pred CCCCCCCCe--eeEEeCCCCeEECCCC
Confidence 448888875 4444444778888853
No 197
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=20.31 E-value=79 Score=26.91 Aligned_cols=37 Identities=30% Similarity=0.565 Sum_probs=28.5
Q ss_pred CCCccCCCccceeeeeEecCCcEEEcccCCccccCccccccccChHhHHHHhhccC
Q psy6453 128 SPPTCLRCGEGVTRVEPTGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLG 183 (282)
Q Consensus 128 ~~k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~~v~gCkRTYLSQRDLQAHInH~h 183 (282)
+-+.|+.|.. ..+..|.|..|| |.-.||+-|=+|...
T Consensus 308 tS~~C~~cg~--------~~~r~~~C~~cg-----------~~~~rD~naa~Ni~~ 344 (364)
T COG0675 308 TSKTCPCCGH--------LSGRLFKCPRCG-----------FVHDRDVNAALNIAR 344 (364)
T ss_pred CcccccccCC--------ccceeEECCCCC-----------CeehhhHHHHHHHHH
Confidence 5578999999 447889999644 456799999998554
No 198
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=20.11 E-value=1e+02 Score=25.42 Aligned_cols=28 Identities=25% Similarity=0.599 Sum_probs=17.3
Q ss_pred CccCCCccceeeeeEecCCcEEEcccCCccc
Q psy6453 130 PTCLRCGEGVTRVEPTGLGTVFMCTHGGARH 160 (282)
Q Consensus 130 k~CprC~d~V~rIEq~~lgsVFMCt~gg~r~ 160 (282)
-.||-|... .|++.. -+|+.|.+||.-+
T Consensus 36 ~~Cp~C~~~--~VkR~a-~GIW~C~kCg~~f 63 (89)
T COG1997 36 HVCPFCGRT--TVKRIA-TGIWKCRKCGAKF 63 (89)
T ss_pred CcCCCCCCc--ceeeec-cCeEEcCCCCCee
Confidence 446666665 444433 4699999866554
Done!