RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6453
(282 letters)
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger).
Length = 49
Score = 32.0 bits (73), Expect = 0.031
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 111 MIPCRH-VFCLSCAQAPRSPPTCLRCGEGVTRV 142
+PC H C CA+ RS C C + + V
Sbjct: 17 FLPCGHLCLCEECAKRLRSKKKCPICRQPIESV 49
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and is
likely to be a general function of this domain; Various
RING fingers exhibit binding activity towards E2
ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 30.2 bits (68), Expect = 0.11
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 98 CEKCEKPIMIYGRMIPCRHVFCLSCAQ 124
C C + + ++PC H FC SC +
Sbjct: 1 CPICLEEYLKDPVILPCGHTFCRSCIR 27
>gnl|CDD|226070 COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic
ion transport and metabolism].
Length = 522
Score = 32.4 bits (74), Expect = 0.24
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 34 TDFGPDENEEPVPTQIDMEADISQLEAPTFTTITRGPPKPMLSLRWDHTVHL 85
D P PVP ++ D F+ I R + S DHTVH+
Sbjct: 59 LDPEPLNGGRPVPVIWEVSTD------ENFSNIVRKGT-VIASPELDHTVHV 103
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a
specialized type of Zn-finger of 40 to 60 residues that
binds two atoms of zinc; defined by the 'cross-brace'
motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified in
a proteins with a wide range of functions such as viral
replication, signal transduction, and development; has
two variants, the C3HC4-type and a C3H2C3-type (RING-H2
finger), which have different cysteine/histidine
pattern; a subset of RINGs are associated with B-Boxes
(C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 28.6 bits (64), Expect = 0.40
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 97 TCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRC 135
C C + ++PC HVFC SC TC C
Sbjct: 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLC 41
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 27.5 bits (61), Expect = 1.0
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 97 TCEKCEKPIMIYGRMIPCRHVFCLSCAQ 124
C C + + PC HVFC C
Sbjct: 4 ECPICLDLLRDPVVLTPCGHVFCRECIL 31
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger). The
C3HC4 type zinc-finger (RING finger) is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc
ions, and has the consensus sequence:
C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C
where X is any amino acid. Many proteins containing a
RING finger play a key role in the ubiquitination
pathway.
Length = 40
Score = 27.1 bits (60), Expect = 1.4
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 98 CEKCEKPIMIYGRMIPCRHVFCLSC 122
C C + ++PC H+FC C
Sbjct: 1 CPICLEEPKDPVTILPCGHLFCSKC 25
>gnl|CDD|223625 COG0551, TopA, Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair].
Length = 140
Score = 29.1 bits (65), Expect = 1.5
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 92 NPIIHTCEKCEKPIMI----YGRMI-----PCRHVFCLSCAQAPRSPPTCLRCGEGVTRV 142
C KC K ++ YG + P + A A ++ C +CG+G+ +
Sbjct: 14 LKTGQICPKCGKNMVKKFGKYGIFLGCSNYPKCDYYEPEKAIAEKTGVKCPKCGKGLLVL 73
Query: 143 EPTGLGTVFM 152
+ G F+
Sbjct: 74 KKGRFGKNFL 83
>gnl|CDD|222375 pfam13780, DUF4176, Domain of unknown function (DUF4176).
Length = 76
Score = 26.7 bits (60), Expect = 3.9
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 102 EKPIMIYGRMI 112
K +MI GR
Sbjct: 14 TKKLMIIGRGQ 24
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain.
Length = 46
Score = 25.4 bits (56), Expect = 5.9
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 110 RMIPCRHVFCLSCAQA 125
++PC HVF C
Sbjct: 17 VVLPCGHVFHKECLDK 32
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 28.1 bits (62), Expect = 6.1
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 7 IQISDLMKMKNLCPLRDSPDNGTPEDNTDFGPDENEEPVPTQIDMEAD 54
I DL+ K P +P+ P D F P+ EEPVP I D
Sbjct: 257 INWDDLINKKITPPF--NPNVSGPNDLRHFDPEFTEEPVPNSIGQSPD 302
>gnl|CDD|185274 PRK15376, PRK15376, pathogenicity island 1 effector protein SipA;
Provisional.
Length = 670
Score = 28.1 bits (62), Expect = 6.5
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 20 PLRDSPDNGTPEDNTDFGPDENEEPVPTQIDMEADI 55
P PD PE PD ++ PT I++ +I
Sbjct: 247 PADKLPDPKIPEPAAGPVPDGGKKAEPTGINININI 282
>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase;
Validated.
Length = 332
Score = 27.5 bits (61), Expect = 7.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 221 TGGPRLALSIIPGLTSLTSKYPQYHPRGSSI 251
T G ++ + I PGLT + Y G+ I
Sbjct: 53 TQGLKIKVLIGPGLTHFIYRLLSYINVGNII 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.449
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,279,889
Number of extensions: 1324986
Number of successful extensions: 1063
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1062
Number of HSP's successfully gapped: 26
Length of query: 282
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 186
Effective length of database: 6,679,618
Effective search space: 1242408948
Effective search space used: 1242408948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)