RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6453
(282 letters)
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 94.1 bits (233), Expect = 1e-24
Identities = 45/102 (44%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 95 IHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAP--RSPPTCLRCGEGVTRVEPTGLGTVFM 152
+H C+KC PI +YGRMIPC+HVFC CA + C C + V R+E G++FM
Sbjct: 1 VHFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFM 60
Query: 153 CTHGGARHSTAGCKRTYLSQRDLMALGRHLGPHPRLHRKDHR 194
C+ GCKRTYLSQRDL A H H R + R
Sbjct: 61 CSI------VQGCKRTYLSQRDLQAHINHR--HMRAGKPVTR 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 2e-04
Identities = 51/323 (15%), Positives = 90/323 (27%), Gaps = 87/323 (26%)
Query: 3 LQRII---QISDLMKMKN--------LCPLRDSPDNGTP-------EDNTDFGPDE-NEE 43
+ I+ +I ++ K+ L + N F E
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 44 PVPTQIDMEADISQLE-----APTFT--TITRGPPKPMLSLRWDHTVHLIGEKVLNPIIH 96
+ I Q + F ++R +P L LR L L P
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLR----QAL---LELRP--- 149
Query: 97 TCEKCEKPIMIYGRMIPC-RHVFCLSCAQAPRSPPTCL-----------RCGEGVTRVEP 144
K ++I G ++ + L + + C C T +E
Sbjct: 150 -----AKNVLIDG-VLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 145 -TGLGTVFMCTHGGARHSTAGCKRTYLSQRDLMALGRHLG--PHPR-L----HRKDHRLF 196
L ++ K S + L R L P+ L + ++ + +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 197 RALVSGICPLVVLSLRGSSIDDCMTGGPRLALSII---PGLT-----SLTSKYPQYHPRG 248
A C +++ + R + D ++ +S+ LT SL KY
Sbjct: 260 NAFNLS-CKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-----LD 312
Query: 249 SSIDDCMTGGPRLALSIIPGLTS 271
D PR L+ P S
Sbjct: 313 CRPQDL----PREVLTTNPRRLS 331
Score = 32.5 bits (73), Expect = 0.18
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 26/115 (22%)
Query: 1 MVLQRIIQISDLMKMKNLCPLRDSPDNGTPEDNTDFGPDENEEPVPTQIDMEADISQLEA 60
++ R Q++D + + + T PDE + + +D E
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMT------LTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 61 PTFTTITRGPPKPM-LSL----------RWDHTVHLIGEKVLNPIIHTCEKCEKP 104
T P LS+ WD+ H+ +K L II + +P
Sbjct: 323 LTTN--------PRRLSIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEP 368
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 7e-04
Identities = 46/251 (18%), Positives = 71/251 (28%), Gaps = 76/251 (30%)
Query: 56 SQLEAPTFT----------TITRGPPKPMLSLRWDHTVHLIGEKVLNPIIHTCEKCEKPI 105
P + G P PMLS+ +L E+V + + T P
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-----NLTQEQVQDYVNKTNS--HLP- 361
Query: 106 MIYGRMIPCRHVFCLSCAQAPRS-----PPTCLRCGEGVTRVEPTGLGTVFMCTHGGARH 160
+ V +S ++ PP L GL R
Sbjct: 362 -------AGKQVE-ISLVNGAKNLVVSGPPQSLY-----------GLNLTL-------RK 395
Query: 161 STA--GCK--RTYLSQRDLMALGRHLGP-----H-PRLHRKDHRLFRALVSGICPLVVLS 210
+ A G R S+R L R L P H L + + LV
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFL-PVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 211 LR--------GSSIDDCMTGGPRLALSIIPGLTSLTSKYPQYHPRGSS-IDDCMTGGPRL 261
++ GS D ++ I+ + L K+ ++ I D GP
Sbjct: 455 IQIPVYDTFDGS---DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF---GP-G 507
Query: 262 ALSIIPGLTSK 272
S + LT +
Sbjct: 508 GASGLGVLTHR 518
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 30.1 bits (68), Expect = 0.19
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 110 RMIPCRHVFCLSCAQA-PRSPPTCLRC 135
+++ C H C C + S +RC
Sbjct: 33 KLLHCGHTICRQCLEKLLASSINGVRC 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 31.7 bits (71), Expect = 0.23
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 110 RMIPCRHVFCLSCAQAP--RSPPTCLRCGEGVTRVEP 144
++ PC H+ C SC + C C + EP
Sbjct: 346 KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 29.0 bits (65), Expect = 0.29
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTR 141
+ CEKC ++ + C H FC SC A S P C C E + +
Sbjct: 16 YKCEKCHL-VLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 28.1 bits (63), Expect = 0.54
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 110 RMIPCRHVFCLSCAQAPRSP-PTC 132
+++PC H C C +A P C
Sbjct: 20 KLLPCLHTLCSGCLEASGMQCPIC 43
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 28.7 bits (64), Expect = 0.61
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 113 PCRHVFCLSCA-QAPRSPPTCLRCGEGV 139
CRH FC SCA + R+ P C C +
Sbjct: 32 KCRHYFCESCALEHFRATPRCYICDQPT 59
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 28.0 bits (63), Expect = 1.0
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 7/38 (18%)
Query: 111 MIPCRHVFCLSC-------AQAPRSPPTCLRCGEGVTR 141
+ C H FC +C + + +C C
Sbjct: 34 SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 28.5 bits (63), Expect = 1.4
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTRVEP 144
+ C C ++ C H +C C + P C C E
Sbjct: 32 YLCSACRN-VLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEG 81
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 27.6 bits (61), Expect = 2.1
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 111 MIPCRHVFCLSCAQ--APRSPPTCLRC 135
+PC H C C Q ++ C C
Sbjct: 30 TLPCNHTLCKPCFQSTVEKASLCCPFC 56
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 26.6 bits (59), Expect = 2.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 97 TCEKCEKPIMIYGRMIPCR----HVFCLSCAQ 124
TCE+C+ +++ H C CAQ
Sbjct: 13 TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQ 44
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 27.1 bits (60), Expect = 2.4
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 96 HTCEKC--EKPIMIYGRMIPCRHVFCLSCAQ 124
C+ C E P+ + C+ +FC C +
Sbjct: 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLK 36
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 26.8 bits (59), Expect = 2.5
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 95 IHTCEKCEKPIMIYGRMIP-CRHVFCLSCAQA---PRSPPTCLRCGE 137
+ C C ++I G+ C L C + P C C +
Sbjct: 15 VKICNIC-HSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 26.6 bits (59), Expect = 2.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 97 TCEKCEKPIMIYGRMIPCR----HVFCLSCAQ 124
TCE+C+ +++ H C CAQ
Sbjct: 13 TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQ 44
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 26.2 bits (58), Expect = 2.7
Identities = 9/29 (31%), Positives = 10/29 (34%), Gaps = 4/29 (13%)
Query: 111 MIPCRHVFCLSC----AQAPRSPPTCLRC 135
I C H FCL C + C C
Sbjct: 35 TIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 26.2 bits (58), Expect = 3.2
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 98 CEKCEKPIMIYGRMIPCR----HVFCLSCAQ 124
C C + +M R + H C C+
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSG 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 25.7 bits (57), Expect = 3.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 111 MIPCRHVFCLSC 122
+I C H FC +C
Sbjct: 30 IIECGHNFCKAC 41
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 26.6 bits (59), Expect = 3.4
Identities = 7/38 (18%), Positives = 9/38 (23%), Gaps = 7/38 (18%)
Query: 111 MIPCRHVFCLSC-------AQAPRSPPTCLRCGEGVTR 141
C H FC +C + C C
Sbjct: 34 SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 26.2 bits (58), Expect = 3.4
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 111 MIPCRHVFCLSC----AQAPRSPPTCLRCGEGVTR 141
I C H FCL C + C C V +
Sbjct: 35 TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 26.3 bits (58), Expect = 3.7
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 97 TCEKCEKPIMIYGRMIPCR----HVFCLSCAQ 124
TC +C++ I R + H C C +
Sbjct: 17 TCAECQQLIGHDSRELFYEDRHFHEGCFRCCR 48
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex,
octameric RUVA, AAA-ATPase domain, complex with
nucleotide, hydrolase; HET: ANP; 3.30A {Thermus
thermophilus} SCOP: a.60.2.1 b.40.4.2
Length = 191
Score = 27.5 bits (62), Expect = 3.7
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 21/50 (42%)
Query: 188 LHRKDHRLFRAL--VSGICPLVVLSLRGSSIDDCMTGGPRLALSIIPGLT 235
++ LF L VSG+ GP++AL+++ L
Sbjct: 63 PDEENLALFELLLSVSGV-------------------GPKVALALLSALP 93
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination,
branch migration, DNA BIND oligomerization, acidic PIN;
2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A
2h5x_A 1bvs_A
Length = 212
Score = 27.6 bits (62), Expect = 4.4
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 21/50 (42%)
Query: 188 LHRKDHRLFRAL--VSGICPLVVLSLRGSSIDDCMTGGPRLALSIIPGLT 235
+ LF L VSG+ GPRLA++ +
Sbjct: 79 PDGETRDLFLTLLSVSGV-------------------GPRLAMAALAVHD 109
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 27.1 bits (60), Expect = 4.5
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 106 MIYGRMIPCRHVFCLSCAQAPRSP-------PTCLRCGEGVTRVEPT 145
M+ +M + CL+C QA + P P C CG G+ +
Sbjct: 4 MMGAKMAESLRLTCLACGQANKVPSDRLAAGPKCGICGAGLITGKVA 50
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 25.8 bits (57), Expect = 4.8
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 110 RMIPCRHVFCLSC 122
+PC H FC C
Sbjct: 20 MALPCLHAFCYVC 32
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 26.7 bits (59), Expect = 4.9
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 96 HTCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTR 141
+ C C + PC H FC +C + C E +
Sbjct: 19 YECPICLM-ALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 27.1 bits (60), Expect = 5.1
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 98 CEKCEKPIMIYGRMIPCR-HVFCLSCAQAPRSPPTCLRCG 136
C C+ I + + V+ L C C+ C
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCF-------ACVVCK 100
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 27.8 bits (62), Expect = 5.1
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 195 LFRALVSGICPLVVLSLRGSSIDDCMTGGPRLALSIIPGLTSLTS 239
+ L SG L ++L +D G +++P
Sbjct: 92 VAAVLGSGRHALDEVNLASCQLDP--AG----LRTLLPVFLRARK 130
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 25.9 bits (57), Expect = 5.3
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 95 IHTCEKCEKPIMIYGRMIP----CRHVFCLSCAQ 124
+ C+KC I+ G + RH C C
Sbjct: 15 LPMCDKCGTGIV--GVFVKLRDRHRHPECYVCTD 46
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 25.7 bits (57), Expect = 5.8
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 111 MIPCRHVFCLSC 122
+ C H C +C
Sbjct: 27 SLDCGHSLCRAC 38
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 25.4 bits (56), Expect = 5.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 110 RMIPCRHVFCLSC 122
++PC H FC C
Sbjct: 28 LILPCAHSFCQKC 40
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 25.4 bits (56), Expect = 5.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 98 CEKCEKPIMIYGRMIPCR----HVFCLSCAQ 124
C++C+K IM R + + H C C +
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHR 38
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA
recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1
a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Length = 203
Score = 26.9 bits (60), Expect = 5.9
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 21/50 (42%)
Query: 188 LHRKDHRLFRAL--VSGICPLVVLSLRGSSIDDCMTGGPRLALSIIPGLT 235
++++ LF+ L +G+ GP+LAL+I+ G++
Sbjct: 64 NNKQERTLFKELIKTNGV-------------------GPKLALAILSGMS 94
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 25.6 bits (56), Expect = 6.0
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 111 MIPCRHVFCLSC-AQAPRSPPTCLRC 135
+PC+HVFC C A C C
Sbjct: 30 SLPCKHVFCYLCVKGASWLGKRCALC 55
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 25.3 bits (55), Expect = 6.6
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 113 PCRHVFCLSCAQA--PRSPPTCLRCGEGVTR 141
C H C SC R C CG + +
Sbjct: 25 VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 25.5 bits (56), Expect = 6.7
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 112 IPCRHVF-CLSCAQAPRSPPTC 132
PC H C SCA +S P C
Sbjct: 34 CPCGHTVCCESCAAQLQSCPVC 55
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 27.2 bits (58), Expect = 6.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 96 HTCEKC-EKPIMIYGRMIPCRH-VFCLSCAQAPRSPPTC 132
TC+ C +K + + IPC H V C CA + R P C
Sbjct: 296 RTCKVCMDKEVSVV--FIPCGHLVVCQECAPSLRKCPIC 332
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 26.6 bits (58), Expect = 7.0
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 97 TCEKCEKPIMIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGE 137
C C + PC H FC +C + C E
Sbjct: 20 ECPICLM-ALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNE 61
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 26.5 bits (58), Expect = 7.2
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 111 MIPCRHVFCLSC 122
+ C H FC C
Sbjct: 79 TLNCAHSFCSYC 90
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 25.1 bits (55), Expect = 7.2
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 112 IPCRH-VFCLSCAQAPRSPPTC 132
+PCRH C C + + P C
Sbjct: 31 LPCRHTCLCDGCVKYFQQCPMC 52
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 26.8 bits (59), Expect = 7.5
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 98 CEKCEKPIMIYGRMIPCR-HVFCLSCAQAPRSPPTCLRCG 136
C C+ I + + V+ L C C+ C
Sbjct: 122 CAACQLGIPPTQVVRRAQDFVYHLHCF-------ACVVCK 154
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 25.8 bits (57), Expect = 7.8
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 111 MIPCRHVFCLSC 122
C H+FC C
Sbjct: 36 STKCDHIFCKFC 47
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 25.5 bits (56), Expect = 8.2
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 93 PIIHTCEKCEKPIMIYGRMIP----CRHVFCLSCAQ 124
+ C+KC I+ G ++ RH C CA
Sbjct: 23 QRMPLCDKCGSGIV--GAVVKARDKYRHPECFVCAD 56
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 26.1 bits (57), Expect = 8.4
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 111 MIPCRHVFCLSC 122
C+H C C
Sbjct: 67 TTVCQHNVCKDC 78
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 26.3 bits (57), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 111 MIPCRHVFCLSC-AQAPRSPPTC 132
C HVFC C + ++ TC
Sbjct: 29 STECGHVFCSQCLRDSLKNANTC 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.449
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,348,426
Number of extensions: 258172
Number of successful extensions: 703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 85
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)