RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6453
(282 letters)
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 28.0 bits (62), Expect = 0.30
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 89 KVLNPIIHTCEKCEKPI----MIYGRMIPCRHVFCLSCAQA--PRSPPTCLRCGEGVTRV 142
++ + T + C I ++ PC H+ C SC + C C +
Sbjct: 14 ELYCEMGSTFQLC--KICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 71
Query: 143 EP 144
EP
Sbjct: 72 EP 73
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 27.2 bits (60), Expect = 0.45
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 109 GRMIPCRHVFCLSCAQAPRSPPTCLRC 135
+++PC H C C + S C C
Sbjct: 19 PKLLPCLHTLCSGCLE--ASGMQCPIC 43
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At1g12440 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 74
Score = 26.8 bits (59), Expect = 0.72
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 98 CEKCEKPIMIYGRMIPCRHVFCLSC 122
C C K + + G C FC +
Sbjct: 28 CLSCNKKVGVTGFKCRCGSTFCGTH 52
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 26.6 bits (58), Expect = 1.1
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 91 LNPIIHTCEKCEKPIMIYGRMI------PCRHVFCLSC-AQAPRSPPTCLRC 135
N I+ C +C+ C H F C ++ ++ C
Sbjct: 28 RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 26.3 bits (57), Expect = 1.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 97 TCEKCEKPIMIYGRMIPCRHVFCLSCAQ 124
C +C + + C H+FC +C
Sbjct: 24 RCSRCTNILREPVCLGGCEHIFCSNCVS 51
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 26.6 bits (58), Expect = 1.9
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 9/64 (14%)
Query: 81 HTVHLIGEKVLNPIIHTCEKCEKPI-MIYGRMIPCR---HVFCLSCAQAPRSPPT----- 131
+ + + V ++ C C + + M+ + C C C +
Sbjct: 34 DRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWL 93
Query: 132 CLRC 135
C C
Sbjct: 94 CKIC 97
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 25.3 bits (55), Expect = 2.6
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 98 CEKCEKPIMIYGRMIPCRHVFCLSCA-QAPRSPPTCLRCGEGVTRV 142
C C + Y +PC H FC C + R PTC C V V
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 24.5 bits (53), Expect = 2.6
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 97 TCEKCEKPIMIYGRMIPCRH---VFCLSC-AQAPRSPPTCLRC 135
+C+ C R C FC++C +Q P CL C
Sbjct: 2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 44
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 26.1 bits (56), Expect = 2.7
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 6/45 (13%)
Query: 97 TCEKCEKPIMIYGRMIPCRHVFCLSC------AQAPRSPPTCLRC 135
+ M+ GR+ C H F L C C C
Sbjct: 44 MTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSC 88
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 24.6 bits (53), Expect = 4.4
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 5/51 (9%)
Query: 92 NPIIHTCEKCEKPIMIYG---RMI--PCRHVFCLSCAQAPRSPPTCLRCGE 137
+P C +C + C FC+ C + C +
Sbjct: 15 DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCED 65
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 24.6 bits (53), Expect = 6.4
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 110 RMIPCRHVFCLSCAQ----APRSPPTCLRCGEGVTR 141
C H+FC C + P C C +T+
Sbjct: 35 VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 24.2 bits (52), Expect = 6.5
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 94 IIHTCEKCEKPIMIYGRMIPCR------HVFCLSCAQAPRSPPTCLRC 135
++ C +P + MI C H C+ + C
Sbjct: 10 LVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHC 57
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 74
Score = 24.1 bits (52), Expect = 7.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 98 CEKCEKPIMIYGRMIPCRHVFCLSC 122
C C K + + G C ++FC
Sbjct: 28 CFMCRKKVGLTGFDCRCGNLFCGLH 52
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At2g36320 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 64
Score = 23.6 bits (51), Expect = 7.9
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 98 CEKCEKPIMIYGRMIPCRHVFCLSC 122
C C K + + G M C FC S
Sbjct: 18 CTVCRKRVGLTGFMCRCGTTFCGSH 42
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 25.5 bits (54), Expect = 8.3
Identities = 11/58 (18%), Positives = 14/58 (24%)
Query: 79 WDHTVHLIGEKVLNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPRSPPTCLRCG 136
+G N + P YG CA+A CLR
Sbjct: 146 AIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYF 203
>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human
(Homo sapiens), IIb [TaxId: 9606]}
Length = 85
Score = 24.2 bits (51), Expect = 8.4
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 69 GPPKPMLSLRWDHTVHLIGEKV-LNPIIHTCEKCEKPIMIYGRMIPCRHVFCLSCAQAPR 127
PPK +L L L + V L + + + + H +A
Sbjct: 1 APPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANN 60
Query: 128 SPPTCLRC 135
+ C
Sbjct: 61 NDSGEYTC 68
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 25.5 bits (54), Expect = 9.1
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 181 HLGPHPRLHRKDHRLFRALVSGICPLVVLSLRGSSIDDCMTGGPRLALSII 231
HL + RL + G +G ++DC+ +LA +++
Sbjct: 302 HLERVAAIDAALQRLPGLHLIGNA------YKGVGLNDCIRNAAQLADALV 346
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.449
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,075,794
Number of extensions: 50375
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 34
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)