Query psy6455
Match_columns 249
No_of_seqs 254 out of 1564
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 18:20:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01299 synapt_SV2 synaptic 100.0 2.9E-28 6.2E-33 215.4 21.0 223 18-240 157-381 (742)
2 TIGR00887 2A0109 phosphate:H+ 99.9 1.2E-25 2.5E-30 194.1 20.4 220 17-236 5-248 (502)
3 TIGR00891 2A0112 putative sial 99.9 6.4E-25 1.4E-29 184.1 19.3 190 22-220 6-195 (405)
4 TIGR02332 HpaX 4-hydroxyphenyl 99.9 8.2E-25 1.8E-29 184.4 18.6 190 24-218 4-194 (412)
5 PRK10077 xylE D-xylose transpo 99.9 9.2E-25 2E-29 187.5 18.3 201 24-227 8-228 (479)
6 COG2814 AraJ Arabinose efflux 99.9 6.2E-25 1.3E-29 179.0 15.8 177 27-214 12-189 (394)
7 PRK11663 regulatory protein Uh 99.9 4.1E-24 8.8E-29 181.4 17.3 185 23-218 18-203 (434)
8 TIGR00879 SP MFS transporter, 99.9 3.3E-24 7.1E-29 183.2 16.5 185 30-225 30-228 (481)
9 TIGR00895 2A0115 benzoate tran 99.9 1.2E-23 2.7E-28 175.8 19.4 190 20-220 9-199 (398)
10 PRK14995 methyl viologen resis 99.9 4.4E-24 9.6E-29 183.9 17.0 181 26-217 4-186 (495)
11 PRK11551 putative 3-hydroxyphe 99.9 8.4E-24 1.8E-28 177.9 18.3 186 24-220 11-197 (406)
12 COG2271 UhpC Sugar phosphate p 99.9 1.1E-24 2.5E-29 176.0 11.0 189 19-218 20-211 (448)
13 PRK03545 putative arabinose tr 99.9 1.1E-23 2.3E-28 176.4 17.1 180 27-217 8-188 (390)
14 PRK10642 proline/glycine betai 99.9 1.8E-23 3.9E-28 180.0 18.7 191 27-220 15-219 (490)
15 TIGR00903 2A0129 major facilit 99.9 5.2E-24 1.1E-28 176.6 14.8 168 40-219 3-171 (368)
16 PRK12307 putative sialic acid 99.9 2E-23 4.4E-28 176.6 18.6 185 23-218 13-197 (426)
17 TIGR00898 2A0119 cation transp 99.9 1.6E-23 3.5E-28 181.0 17.7 176 49-238 110-288 (505)
18 PRK10406 alpha-ketoglutarate t 99.9 3.7E-23 8E-28 175.4 17.6 193 24-219 18-224 (432)
19 PRK10213 nepI ribonucleoside t 99.9 4.6E-23 9.9E-28 172.8 17.1 181 26-217 18-199 (394)
20 PRK15403 multidrug efflux syst 99.9 5.1E-23 1.1E-27 173.5 17.2 174 34-218 22-196 (413)
21 PRK03893 putative sialic acid 99.9 9.8E-23 2.1E-27 175.7 18.2 186 23-219 15-200 (496)
22 TIGR00710 efflux_Bcr_CflA drug 99.9 9.6E-23 2.1E-27 170.0 16.8 176 32-218 9-185 (385)
23 PRK09556 uhpT sugar phosphate 99.9 8E-24 1.7E-28 181.2 10.3 199 12-218 13-217 (467)
24 KOG0254|consensus 99.9 2.5E-22 5.4E-27 173.7 16.8 166 64-239 90-255 (513)
25 PRK15402 multidrug efflux syst 99.9 4.5E-22 9.8E-27 167.5 17.6 184 24-218 9-193 (406)
26 PRK03699 putative transporter; 99.9 6.6E-22 1.4E-26 165.9 17.5 176 26-211 5-180 (394)
27 PF07690 MFS_1: Major Facilita 99.9 2.5E-22 5.5E-27 165.3 14.6 171 35-216 3-175 (352)
28 TIGR00711 efflux_EmrB drug res 99.9 1.3E-22 2.7E-27 174.5 13.3 177 29-216 3-180 (485)
29 PRK10091 MFS transport protein 99.9 5.1E-22 1.1E-26 165.9 16.4 176 31-217 6-182 (382)
30 KOG1330|consensus 99.9 3.5E-24 7.5E-29 174.8 2.9 182 26-217 31-213 (493)
31 TIGR00893 2A0114 d-galactonate 99.9 1.6E-22 3.4E-27 168.6 12.4 168 39-217 5-173 (399)
32 PRK09952 shikimate transporter 99.9 1.3E-21 2.8E-26 166.2 18.1 190 27-220 21-226 (438)
33 PRK11652 emrD multidrug resist 99.9 1.7E-21 3.6E-26 163.4 18.1 181 27-218 7-188 (394)
34 KOG0255|consensus 99.9 1.3E-21 2.8E-26 169.8 17.8 171 56-240 111-281 (521)
35 TIGR00894 2A0114euk Na(+)-depe 99.9 9.6E-22 2.1E-26 168.3 16.7 186 22-218 13-224 (465)
36 TIGR00890 2A0111 Oxalate/Forma 99.9 2.6E-22 5.6E-27 166.5 11.7 163 43-217 18-181 (377)
37 PRK11273 glpT sn-glycerol-3-ph 99.9 2E-21 4.4E-26 165.8 17.1 185 22-218 23-213 (452)
38 TIGR00900 2A0121 H+ Antiporter 99.9 1.9E-21 4.2E-26 160.7 15.6 168 35-213 6-178 (365)
39 PRK15075 citrate-proton sympor 99.9 4.6E-21 9.9E-26 162.8 18.0 189 26-217 13-215 (434)
40 PLN00028 nitrate transmembrane 99.9 1.9E-21 4E-26 166.8 15.3 192 20-214 28-219 (476)
41 PRK10504 putative transporter; 99.9 2.8E-21 6E-26 165.7 16.4 176 29-215 11-187 (471)
42 PRK10133 L-fucose transporter; 99.9 4.3E-21 9.3E-26 162.8 17.1 153 24-176 22-177 (438)
43 PRK12382 putative transporter; 99.9 4.3E-21 9.3E-26 160.8 16.5 174 31-215 18-200 (392)
44 PRK10473 multidrug efflux syst 99.9 5E-21 1.1E-25 160.4 16.9 173 34-217 9-182 (392)
45 PRK11043 putative transporter; 99.9 4.6E-21 1E-25 161.1 16.6 170 37-217 15-184 (401)
46 KOG0569|consensus 99.9 7.3E-21 1.6E-25 159.6 17.4 168 65-241 62-233 (485)
47 PRK05122 major facilitator sup 99.9 3.7E-21 8E-26 161.6 15.6 175 30-215 17-200 (399)
48 PRK09705 cynX putative cyanate 99.9 4.7E-21 1E-25 160.7 14.4 155 44-209 25-179 (393)
49 TIGR00881 2A0104 phosphoglycer 99.9 3.4E-22 7.3E-27 166.0 7.3 170 37-217 4-175 (379)
50 TIGR00806 rfc RFC reduced fola 99.9 6.3E-21 1.4E-25 158.4 14.2 163 43-218 41-207 (511)
51 PRK15034 nitrate/nitrite trans 99.9 4.1E-20 8.8E-25 155.5 19.0 190 23-213 29-231 (462)
52 TIGR00885 fucP L-fucose:H+ sym 99.9 1.4E-20 3E-25 158.5 16.3 181 30-210 5-203 (410)
53 TIGR00712 glpT glycerol-3-phos 99.9 5.4E-21 1.2E-25 162.5 13.3 182 26-218 25-211 (438)
54 PRK11102 bicyclomycin/multidru 99.9 1.1E-20 2.4E-25 157.4 14.4 164 43-217 6-170 (377)
55 TIGR00886 2A0108 nitrite extru 99.9 2.1E-20 4.7E-25 155.0 15.8 184 32-217 5-192 (366)
56 PRK11195 lysophospholipid tran 99.8 3.7E-20 8E-25 155.2 16.4 168 36-218 11-178 (393)
57 KOG0253|consensus 99.8 3.9E-20 8.4E-25 147.1 15.3 218 13-243 63-280 (528)
58 PF00083 Sugar_tr: Sugar (and 99.8 3.8E-24 8.2E-29 182.4 -8.3 194 36-237 8-215 (451)
59 PRK09874 drug efflux system pr 99.8 7.6E-20 1.6E-24 153.9 17.9 173 32-216 18-196 (408)
60 TIGR00805 oat sodium-independe 99.8 1.5E-20 3.2E-25 165.6 13.2 186 31-216 36-283 (633)
61 PRK10054 putative transporter; 99.8 7.3E-20 1.6E-24 153.6 15.2 170 35-216 14-185 (395)
62 PTZ00207 hypothetical protein; 99.8 1.6E-19 3.4E-24 155.9 16.6 173 24-212 24-203 (591)
63 PRK03633 putative MFS family t 99.8 1.8E-19 3.8E-24 150.6 16.3 147 30-176 8-154 (381)
64 KOG2532|consensus 99.8 4.8E-19 1E-23 149.8 18.7 154 56-219 66-222 (466)
65 KOG0252|consensus 99.8 1.5E-20 3.3E-25 153.3 8.8 199 22-220 35-252 (538)
66 TIGR00892 2A0113 monocarboxyla 99.8 6.7E-20 1.4E-24 156.4 13.2 177 25-213 16-193 (455)
67 cd06174 MFS The Major Facilita 99.8 1.3E-19 2.9E-24 148.7 13.8 168 33-211 4-171 (352)
68 COG2223 NarK Nitrate/nitrite t 99.8 6.8E-19 1.5E-23 142.7 16.8 184 23-219 9-199 (417)
69 TIGR00899 2A0120 sugar efflux 99.8 2E-19 4.3E-24 149.6 14.3 172 36-218 5-181 (375)
70 PRK10207 dipeptide/tripeptide 99.8 2.1E-19 4.6E-24 154.2 14.6 174 28-212 14-192 (489)
71 PRK11646 multidrug resistance 99.8 5.4E-19 1.2E-23 148.5 16.6 161 43-215 25-187 (400)
72 PRK10642 proline/glycine betai 99.8 4.9E-19 1.1E-23 152.6 16.1 188 40-237 262-458 (490)
73 TIGR00924 yjdL_sub1_fam amino 99.8 3.1E-19 6.8E-24 152.9 14.5 171 31-212 13-190 (475)
74 PRK10489 enterobactin exporter 99.8 1.4E-19 3E-24 153.0 12.1 168 39-217 28-200 (417)
75 PF06609 TRI12: Fungal trichot 99.8 5.5E-19 1.2E-23 151.9 15.1 160 41-213 57-216 (599)
76 TIGR00897 2A0118 polyol permea 99.8 1.2E-18 2.7E-23 146.5 16.1 130 47-176 32-166 (402)
77 KOG2615|consensus 99.8 2.5E-19 5.5E-24 143.1 10.7 119 58-177 63-181 (451)
78 TIGR00883 2A0106 metabolite-pr 99.8 1.9E-18 4E-23 144.3 15.2 177 40-219 5-196 (394)
79 KOG2533|consensus 99.8 5.1E-18 1.1E-22 144.1 17.0 164 50-218 68-232 (495)
80 PRK11010 ampG muropeptide tran 99.8 1.9E-17 4.2E-22 142.5 16.4 176 31-218 15-199 (491)
81 TIGR00896 CynX cyanate transpo 99.8 3.9E-18 8.4E-23 141.1 10.4 151 45-206 17-167 (355)
82 PRK11902 ampG muropeptide tran 99.8 5E-17 1.1E-21 136.8 16.7 173 34-218 5-186 (402)
83 TIGR01299 synapt_SV2 synaptic 99.8 3.6E-17 7.8E-22 145.3 16.3 140 67-218 599-738 (742)
84 PRK15462 dipeptide/tripeptide 99.8 3.8E-17 8.3E-22 139.0 15.4 171 29-210 10-185 (493)
85 PRK09584 tppB putative tripept 99.7 3.4E-17 7.4E-22 141.2 15.0 166 32-208 25-195 (500)
86 PRK11128 putative 3-phenylprop 99.7 5.1E-17 1.1E-21 135.8 13.1 162 40-216 16-181 (382)
87 TIGR00880 2_A_01_02 Multidrug 99.7 5.2E-17 1.1E-21 115.9 10.9 135 68-213 3-137 (141)
88 PRK11551 putative 3-hydroxyphe 99.7 1.5E-16 3.2E-21 134.0 15.3 159 45-213 237-395 (406)
89 KOG3764|consensus 99.7 8.1E-18 1.8E-22 135.3 7.0 146 57-213 100-246 (464)
90 COG0738 FucP Fucose permease [ 99.7 1E-16 2.2E-21 129.5 13.2 184 29-212 14-208 (422)
91 TIGR00889 2A0110 nucleoside tr 99.7 8.6E-17 1.9E-21 135.9 13.5 149 63-216 251-405 (418)
92 PRK15011 sugar efflux transpor 99.7 2E-16 4.4E-21 132.7 15.6 156 48-215 236-392 (393)
93 TIGR00902 2A0127 phenyl propri 99.7 7.4E-17 1.6E-21 134.9 12.7 157 35-206 11-171 (382)
94 TIGR00901 2A0125 AmpG-related 99.7 9E-17 2E-21 133.0 12.9 167 45-216 5-181 (356)
95 PRK06814 acylglycerophosphoeth 99.7 2.9E-16 6.2E-21 148.0 17.8 173 34-217 21-198 (1140)
96 TIGR00890 2A0111 Oxalate/Forma 99.7 1.2E-16 2.6E-21 132.6 13.3 148 49-207 226-375 (377)
97 PRK09528 lacY galactoside perm 99.7 1.4E-16 2.9E-21 134.9 12.8 145 57-212 256-401 (420)
98 PRK15011 sugar efflux transpor 99.7 4.6E-16 1E-20 130.5 15.5 169 37-217 24-198 (393)
99 PRK08633 2-acyl-glycerophospho 99.7 5.9E-16 1.3E-20 146.0 17.7 129 50-178 32-165 (1146)
100 cd06174 MFS The Major Facilita 99.7 9.8E-16 2.1E-20 125.8 16.1 164 39-213 186-351 (352)
101 PRK05122 major facilitator sup 99.7 1.6E-15 3.4E-20 127.5 16.8 155 49-216 237-391 (399)
102 TIGR00899 2A0120 sugar efflux 99.7 3.3E-15 7.1E-20 124.3 17.8 154 50-215 221-375 (375)
103 TIGR00882 2A0105 oligosacchari 99.7 1.1E-15 2.4E-20 128.3 15.0 167 36-216 10-186 (396)
104 TIGR00902 2A0127 phenyl propri 99.7 2.7E-15 5.9E-20 125.4 15.8 152 46-210 223-375 (382)
105 PRK10489 enterobactin exporter 99.7 3.6E-15 7.7E-20 126.1 15.9 160 47-217 242-403 (417)
106 PRK09556 uhpT sugar phosphate 99.7 3.2E-15 6.9E-20 128.2 15.3 181 32-213 262-448 (467)
107 PRK09528 lacY galactoside perm 99.7 2.6E-15 5.6E-20 127.1 13.8 166 36-213 18-190 (420)
108 TIGR00892 2A0113 monocarboxyla 99.6 1.1E-15 2.3E-20 130.7 11.0 157 43-209 256-416 (455)
109 PRK09874 drug efflux system pr 99.6 3.7E-15 8E-20 125.4 14.0 137 65-212 260-396 (408)
110 PRK03545 putative arabinose tr 99.6 1.4E-14 3E-19 121.5 17.0 149 51-212 229-378 (390)
111 PRK09952 shikimate transporter 99.6 1.4E-14 3E-19 123.3 16.6 164 44-216 266-435 (438)
112 KOG2504|consensus 99.6 6.8E-16 1.5E-20 132.3 8.2 179 24-214 42-221 (509)
113 TIGR01301 GPH_sucrose GPH fami 99.6 1.5E-14 3.3E-19 122.8 16.2 184 34-217 10-222 (477)
114 PRK12382 putative transporter; 99.6 1.4E-14 3E-19 121.5 15.8 153 47-212 235-387 (392)
115 TIGR00879 SP MFS transporter, 99.6 1E-14 2.2E-19 124.7 15.3 161 45-216 301-473 (481)
116 PRK03699 putative transporter; 99.6 4.5E-15 9.8E-20 124.6 12.3 162 42-215 219-381 (394)
117 TIGR00897 2A0118 polyol permea 99.6 2.6E-14 5.6E-19 120.4 16.4 163 38-213 232-400 (402)
118 PRK09705 cynX putative cyanate 99.6 1.8E-14 3.8E-19 121.0 15.3 165 42-218 219-386 (393)
119 PRK03633 putative MFS family t 99.6 2.8E-14 6.1E-19 119.2 15.6 151 49-213 221-371 (381)
120 TIGR00893 2A0114 d-galactonate 99.6 3.6E-14 7.7E-19 118.3 16.1 167 33-211 220-396 (399)
121 TIGR00887 2A0109 phosphate:H+ 99.6 5.6E-14 1.2E-18 121.6 17.6 181 37-218 297-493 (502)
122 PF05977 MFS_3: Transmembrane 99.6 2.3E-14 5E-19 123.4 14.4 169 35-214 17-190 (524)
123 PRK10077 xylE D-xylose transpo 99.6 8.6E-14 1.9E-18 119.7 17.6 167 46-217 289-461 (479)
124 PRK03893 putative sialic acid 99.6 1.1E-14 2.4E-19 125.7 12.2 145 48-203 295-442 (496)
125 TIGR00883 2A0106 metabolite-pr 99.6 8.5E-15 1.8E-19 122.2 10.0 159 36-204 227-391 (394)
126 PRK12307 putative sialic acid 99.6 1.5E-13 3.2E-18 116.5 17.1 130 47-176 250-381 (426)
127 TIGR00792 gph sugar (Glycoside 99.6 3.4E-14 7.4E-19 120.7 13.2 164 50-217 22-198 (437)
128 TIGR00895 2A0115 benzoate tran 99.6 9.5E-14 2.1E-18 116.1 14.8 137 39-175 261-397 (398)
129 TIGR00891 2A0112 putative sial 99.6 8.5E-14 1.8E-18 116.8 14.2 133 46-178 256-390 (405)
130 PF11700 ATG22: Vacuole efflux 99.6 2.2E-13 4.7E-18 116.2 16.5 159 48-216 302-470 (477)
131 PRK10504 putative transporter; 99.5 1.1E-13 2.4E-18 118.8 13.9 139 41-179 274-416 (471)
132 PF05977 MFS_3: Transmembrane 99.5 1.6E-13 3.4E-18 118.3 14.7 153 47-210 237-390 (524)
133 PRK11128 putative 3-phenylprop 99.5 2E-13 4.4E-18 114.1 15.0 146 51-209 228-374 (382)
134 TIGR00900 2A0121 H+ Antiporter 99.5 1.3E-13 2.9E-18 113.9 13.4 129 49-177 232-362 (365)
135 KOG2325|consensus 99.5 5.3E-14 1.1E-18 117.9 10.8 197 21-218 27-234 (488)
136 COG2814 AraJ Arabinose efflux 99.5 7.1E-13 1.5E-17 108.8 17.1 162 38-212 222-384 (394)
137 TIGR00898 2A0119 cation transp 99.5 3.9E-13 8.5E-18 116.4 16.3 148 54-217 349-498 (505)
138 TIGR00792 gph sugar (Glycoside 99.5 3.6E-13 7.7E-18 114.5 15.5 134 45-179 239-381 (437)
139 PRK11273 glpT sn-glycerol-3-ph 99.5 2.1E-13 4.6E-18 116.5 14.0 162 41-213 266-434 (452)
140 TIGR00889 2A0110 nucleoside tr 99.5 3.5E-13 7.7E-18 114.0 15.1 158 42-217 16-183 (418)
141 PRK11663 regulatory protein Uh 99.5 3.7E-13 8E-18 114.5 14.9 160 41-212 256-422 (434)
142 PRK11010 ampG muropeptide tran 99.5 8.6E-13 1.9E-17 113.8 16.7 155 51-216 246-405 (491)
143 TIGR02718 sider_RhtX_FptX side 99.5 8.3E-13 1.8E-17 110.7 16.0 175 30-215 3-185 (390)
144 PRK15075 citrate-proton sympor 99.5 7.1E-13 1.5E-17 112.7 15.6 139 40-178 250-394 (434)
145 TIGR00882 2A0105 oligosacchari 99.5 5.8E-13 1.3E-17 111.9 14.7 140 59-209 250-390 (396)
146 PLN00028 nitrate transmembrane 99.5 4.4E-13 9.5E-18 115.3 13.7 152 50-214 274-433 (476)
147 COG2807 CynX Cyanate permease 99.5 3.3E-13 7.1E-18 108.0 11.6 171 30-212 14-184 (395)
148 PRK10406 alpha-ketoglutarate t 99.5 9.8E-13 2.1E-17 111.8 15.3 160 44-214 259-424 (432)
149 TIGR02718 sider_RhtX_FptX side 99.5 1.1E-12 2.4E-17 110.0 14.4 149 50-209 230-386 (390)
150 PRK15402 multidrug efflux syst 99.5 4.1E-12 8.9E-17 107.1 16.1 129 48-177 235-369 (406)
151 PRK09848 glucuronide transport 99.4 1.4E-11 3E-16 105.3 18.7 135 44-178 244-388 (448)
152 KOG0569|consensus 99.4 1.1E-11 2.5E-16 104.6 16.6 180 27-218 269-459 (485)
153 PRK11646 multidrug resistance 99.4 4.1E-12 8.9E-17 107.0 13.9 155 48-209 228-383 (400)
154 PRK11902 ampG muropeptide tran 99.4 4.8E-12 1E-16 106.6 14.3 147 52-213 234-389 (402)
155 TIGR02332 HpaX 4-hydroxyphenyl 99.4 3.1E-12 6.6E-17 108.1 13.0 161 33-203 247-410 (412)
156 PRK10054 putative transporter; 99.4 4.1E-12 8.8E-17 106.8 13.7 142 56-209 237-379 (395)
157 PF01306 LacY_symp: LacY proto 99.4 7E-12 1.5E-16 103.9 14.7 167 38-216 235-403 (412)
158 PRK08633 2-acyl-glycerophospho 99.4 5.1E-12 1.1E-16 119.5 15.7 149 48-206 252-402 (1146)
159 PRK10213 nepI ribonucleoside t 99.4 1.8E-11 3.9E-16 102.9 17.2 147 50-208 239-385 (394)
160 TIGR01272 gluP glucose/galacto 99.4 8.5E-12 1.8E-16 101.4 14.6 154 33-200 145-301 (310)
161 PRK10091 MFS transport protein 99.4 1.9E-11 4E-16 102.3 16.7 150 51-212 223-374 (382)
162 COG2270 Permeases of the major 99.4 2.5E-12 5.3E-17 105.1 10.1 152 55-216 280-431 (438)
163 TIGR00710 efflux_Bcr_CflA drug 99.4 3.2E-11 7E-16 100.6 17.3 126 46-172 224-356 (385)
164 PF03825 Nuc_H_symport: Nucleo 99.4 9.6E-12 2.1E-16 104.2 13.8 170 41-215 220-397 (400)
165 KOG2504|consensus 99.4 1.2E-12 2.7E-17 112.3 8.5 176 29-214 299-476 (509)
166 TIGR00788 fbt folate/biopterin 99.4 3.9E-12 8.4E-17 109.1 11.4 175 29-217 27-212 (468)
167 TIGR00712 glpT glycerol-3-phos 99.4 5.1E-12 1.1E-16 107.6 11.7 161 45-216 268-436 (438)
168 PRK10429 melibiose:sodium symp 99.4 1.5E-10 3.3E-15 99.6 20.9 137 42-178 245-393 (473)
169 TIGR00894 2A0114euk Na(+)-depe 99.4 1.4E-11 3E-16 105.8 14.2 176 30-214 263-450 (465)
170 COG3104 PTR2 Dipeptide/tripept 99.4 1.4E-12 3.1E-17 108.5 7.7 174 30-214 23-206 (498)
171 PRK09669 putative symporter Ya 99.4 7E-12 1.5E-16 107.0 12.1 162 51-216 33-207 (444)
172 PRK11195 lysophospholipid tran 99.4 2.8E-11 6E-16 101.7 15.4 122 54-176 232-354 (393)
173 TIGR00896 CynX cyanate transpo 99.4 6.6E-12 1.4E-16 103.9 11.1 134 44-178 213-348 (355)
174 TIGR00903 2A0129 major facilit 99.4 2.7E-11 6E-16 100.7 14.7 164 35-215 199-366 (368)
175 TIGR00881 2A0104 phosphoglycer 99.4 3.2E-12 7E-17 106.1 9.1 134 43-176 231-370 (379)
176 PF06813 Nodulin-like: Nodulin 99.4 9E-12 2E-16 96.9 10.8 147 27-176 2-155 (250)
177 TIGR00901 2A0125 AmpG-related 99.4 9.5E-12 2.1E-16 103.0 11.6 121 42-162 223-355 (356)
178 TIGR00711 efflux_EmrB drug res 99.3 9.4E-12 2E-16 107.2 11.2 137 40-176 267-408 (485)
179 PF05631 DUF791: Protein of un 99.3 3.9E-11 8.4E-16 96.7 13.8 182 22-217 32-220 (354)
180 COG2223 NarK Nitrate/nitrite t 99.3 3.1E-11 6.7E-16 98.6 13.3 166 36-212 226-399 (417)
181 PRK06814 acylglycerophosphoeth 99.3 1.5E-11 3.2E-16 116.4 12.7 152 45-206 242-414 (1140)
182 COG2271 UhpC Sugar phosphate p 99.3 8E-12 1.7E-16 102.1 9.2 174 28-212 252-432 (448)
183 PRK14995 methyl viologen resis 99.3 1.3E-11 2.9E-16 106.7 11.3 137 41-177 272-412 (495)
184 PRK11102 bicyclomycin/multidru 99.3 1.6E-10 3.4E-15 96.4 17.0 124 49-173 215-344 (377)
185 PF13347 MFS_2: MFS/sugar tran 99.3 6.3E-11 1.4E-15 100.6 14.8 141 38-179 235-385 (428)
186 PRK10473 multidrug efflux syst 99.3 5.7E-11 1.2E-15 99.7 13.6 121 51-176 226-347 (392)
187 KOG4686|consensus 99.3 2.6E-11 5.7E-16 94.2 10.4 174 28-213 267-442 (459)
188 PF07690 MFS_1: Major Facilita 99.3 2.4E-11 5.1E-16 100.0 10.6 127 43-169 221-352 (352)
189 PRK09669 putative symporter Ya 99.3 5.6E-10 1.2E-14 95.3 18.7 131 49-179 250-389 (444)
190 PF13347 MFS_2: MFS/sugar tran 99.3 1.3E-11 2.7E-16 104.9 8.4 161 50-215 24-200 (428)
191 PRK10133 L-fucose transporter; 99.3 9.5E-11 2.1E-15 99.8 13.7 140 55-208 287-427 (438)
192 PRK15034 nitrate/nitrite trans 99.3 3.4E-10 7.4E-15 95.9 16.5 157 45-212 269-452 (462)
193 PRK10429 melibiose:sodium symp 99.3 9.3E-11 2E-15 100.9 13.4 177 36-216 14-204 (473)
194 PF03137 OATP: Organic Anion T 99.3 5.2E-13 1.1E-17 115.5 -0.5 184 33-216 8-252 (539)
195 KOG0253|consensus 99.3 1.3E-10 2.8E-15 93.5 13.0 131 72-215 390-520 (528)
196 PRK11043 putative transporter; 99.2 4.1E-10 8.9E-15 94.8 15.2 128 48-176 223-355 (401)
197 PF03825 Nuc_H_symport: Nucleo 99.2 1.9E-10 4.1E-15 96.5 12.7 167 41-217 15-183 (400)
198 COG2211 MelB Na+/melibiose sym 99.2 5.2E-09 1.1E-13 88.0 18.1 180 36-215 244-438 (467)
199 PRK11462 putative transporter; 99.1 1.1E-09 2.4E-14 93.8 14.0 172 41-216 22-207 (460)
200 TIGR00788 fbt folate/biopterin 99.1 3.9E-10 8.5E-15 96.8 10.3 156 56-215 281-447 (468)
201 KOG3626|consensus 99.1 7.4E-10 1.6E-14 97.1 11.9 189 29-217 98-346 (735)
202 KOG2563|consensus 99.1 2.8E-09 6.1E-14 88.0 13.3 157 22-179 39-203 (480)
203 TIGR00924 yjdL_sub1_fam amino 99.1 5.4E-09 1.2E-13 90.0 15.9 137 65-212 314-466 (475)
204 COG2807 CynX Cyanate permease 99.1 6.5E-09 1.4E-13 83.7 14.6 163 39-212 219-383 (395)
205 PRK11462 putative transporter; 99.1 3.3E-08 7.2E-13 84.8 19.8 117 62-178 262-387 (460)
206 COG0477 ProP Permeases of the 99.1 4.9E-09 1.1E-13 83.8 13.7 156 42-206 16-177 (338)
207 PRK11652 emrD multidrug resist 99.1 2E-08 4.3E-13 84.4 17.7 126 50-176 229-358 (394)
208 KOG2532|consensus 99.0 1.9E-09 4.2E-14 91.7 10.9 175 29-213 259-446 (466)
209 PRK09584 tppB putative tripept 99.0 3.5E-08 7.5E-13 85.5 17.6 145 65-210 318-475 (500)
210 TIGR00885 fucP L-fucose:H+ sym 99.0 7.7E-09 1.7E-13 87.4 13.2 126 49-177 253-380 (410)
211 COG2211 MelB Na+/melibiose sym 99.0 1.7E-08 3.7E-13 84.9 14.9 179 35-217 19-211 (467)
212 PRK09848 glucuronide transport 99.0 1.2E-08 2.5E-13 87.4 14.0 123 51-173 32-172 (448)
213 KOG0252|consensus 99.0 1.7E-09 3.7E-14 89.4 8.3 186 28-219 304-503 (538)
214 PF01306 LacY_symp: LacY proto 99.0 3.2E-09 6.8E-14 88.3 9.4 162 38-213 17-187 (412)
215 KOG2816|consensus 99.0 2.3E-08 4.9E-13 85.1 14.8 132 71-218 70-204 (463)
216 KOG0254|consensus 99.0 3.8E-08 8.3E-13 85.6 16.5 178 28-218 295-488 (513)
217 TIGR00886 2A0108 nitrite extru 98.9 2.4E-09 5.3E-14 88.8 7.4 117 47-164 244-365 (366)
218 PF03209 PUCC: PUCC protein; 98.9 1.6E-07 3.5E-12 77.2 17.6 161 51-212 232-396 (403)
219 KOG3762|consensus 98.9 2E-09 4.4E-14 90.5 5.3 147 54-211 397-544 (618)
220 PRK15403 multidrug efflux syst 98.9 1.7E-07 3.7E-12 79.3 16.1 132 44-176 234-371 (413)
221 KOG3764|consensus 98.9 1.9E-09 4E-14 87.7 3.9 160 43-213 285-453 (464)
222 PF03209 PUCC: PUCC protein; 98.9 7.9E-08 1.7E-12 79.0 13.3 125 54-179 6-152 (403)
223 PF06609 TRI12: Fungal trichot 98.9 1.6E-07 3.4E-12 81.9 15.5 190 29-218 311-558 (599)
224 TIGR00926 2A1704 Peptide:H+ sy 98.8 1.7E-07 3.6E-12 83.2 16.0 155 54-212 14-180 (654)
225 PRK10207 dipeptide/tripeptide 98.8 1.2E-07 2.6E-12 81.9 14.6 147 65-212 311-474 (489)
226 PF00083 Sugar_tr: Sugar (and 98.8 5.7E-12 1.2E-16 107.6 -12.4 161 45-218 270-441 (451)
227 PF06779 DUF1228: Protein of u 98.8 1.7E-08 3.6E-13 64.6 6.4 80 40-119 4-83 (85)
228 COG0738 FucP Fucose permease [ 98.8 5.8E-08 1.2E-12 79.4 9.3 150 44-207 252-402 (422)
229 TIGR01301 GPH_sucrose GPH fami 98.7 1.6E-06 3.4E-11 74.3 16.3 143 66-217 308-475 (477)
230 PF05978 UNC-93: Ion channel r 98.7 1.7E-06 3.6E-11 62.6 13.9 117 59-176 33-149 (156)
231 PF11700 ATG22: Vacuole efflux 98.7 3.1E-06 6.8E-11 72.7 17.4 151 65-218 72-252 (477)
232 TIGR01272 gluP glucose/galacto 98.6 1.7E-07 3.7E-12 76.3 8.7 101 112-212 6-111 (310)
233 KOG4686|consensus 98.6 1.7E-08 3.8E-13 78.8 1.0 150 28-177 44-197 (459)
234 KOG2533|consensus 98.5 1.4E-07 2.9E-12 81.0 6.0 141 30-170 275-422 (495)
235 PF12832 MFS_1_like: MFS_1 lik 98.5 4.8E-07 1E-11 57.4 6.9 66 37-102 9-74 (77)
236 PF03092 BT1: BT1 family; Int 98.5 1.4E-06 3E-11 74.2 10.6 153 49-213 11-174 (433)
237 PF01770 Folate_carrier: Reduc 98.5 3.9E-06 8.6E-11 69.8 12.7 157 52-218 28-186 (412)
238 KOG0255|consensus 98.4 7.9E-06 1.7E-10 71.4 13.8 137 70-218 357-497 (521)
239 KOG2816|consensus 98.4 6E-06 1.3E-10 70.4 12.6 124 54-178 268-392 (463)
240 KOG0637|consensus 98.4 3.4E-07 7.4E-12 76.0 3.7 144 32-175 36-202 (498)
241 PTZ00207 hypothetical protein; 98.3 8.7E-06 1.9E-10 71.4 12.2 158 52-213 377-551 (591)
242 KOG2563|consensus 98.2 1.8E-05 3.9E-10 65.9 10.8 177 32-216 270-452 (480)
243 TIGR00769 AAA ADP/ATP carrier 98.2 0.00043 9.3E-09 59.3 19.4 151 27-177 6-190 (472)
244 PRK15462 dipeptide/tripeptide 98.1 0.00028 6.1E-09 60.9 16.5 143 64-206 309-469 (493)
245 KOG2615|consensus 98.1 3.5E-05 7.6E-10 63.0 9.5 147 32-178 265-414 (451)
246 COG2270 Permeases of the major 98.0 0.00015 3.2E-09 60.2 11.1 154 64-217 59-224 (438)
247 KOG1237|consensus 97.9 0.0006 1.3E-08 59.9 15.0 155 47-212 57-243 (571)
248 PF00854 PTR2: POT family; In 97.9 6.3E-05 1.4E-09 62.9 7.9 109 94-213 2-122 (372)
249 KOG4332|consensus 97.8 4.5E-05 9.6E-10 59.7 6.0 101 44-145 53-154 (454)
250 KOG3574|consensus 97.8 0.00023 5E-09 58.3 9.8 143 26-171 29-188 (510)
251 TIGR00805 oat sodium-independe 97.8 0.00066 1.4E-08 60.8 13.8 150 30-179 332-582 (633)
252 PF03092 BT1: BT1 family; Int 97.7 0.00024 5.3E-09 60.6 9.0 154 60-216 252-415 (433)
253 PF02487 CLN3: CLN3 protein; 97.7 0.0012 2.5E-08 55.3 12.6 111 61-175 279-394 (402)
254 KOG3098|consensus 97.7 0.0028 6.1E-08 54.0 14.6 106 69-175 56-161 (461)
255 PF02487 CLN3: CLN3 protein; 97.6 0.00042 9.2E-09 57.9 8.5 132 66-212 62-193 (402)
256 KOG3098|consensus 97.5 0.0062 1.3E-07 51.9 14.5 140 35-175 247-411 (461)
257 PF06963 FPN1: Ferroportin1 (F 97.5 0.0034 7.4E-08 53.3 12.4 128 48-175 278-415 (432)
258 PRK03612 spermidine synthase; 97.4 0.0077 1.7E-07 52.7 14.4 118 57-176 44-169 (521)
259 COG3104 PTR2 Dipeptide/tripept 97.4 0.0072 1.6E-07 51.5 13.5 142 64-210 325-483 (498)
260 KOG1330|consensus 97.3 0.00099 2.1E-08 56.1 7.7 121 58-178 278-412 (493)
261 COG3202 ATP/ADP translocase [E 97.2 0.071 1.5E-06 45.6 17.4 157 20-177 19-209 (509)
262 PF03219 TLC: TLC ATP/ADP tran 97.2 0.13 2.9E-06 44.6 20.4 157 20-177 16-205 (491)
263 KOG2325|consensus 96.8 0.0016 3.4E-08 55.7 4.0 179 20-209 254-470 (488)
264 KOG3626|consensus 96.6 0.067 1.5E-06 48.2 13.1 152 28-179 392-650 (735)
265 PF03137 OATP: Organic Anion T 96.5 0.00072 1.6E-08 59.2 0.0 151 28-178 305-514 (539)
266 KOG3762|consensus 96.3 0.00087 1.9E-08 57.4 -0.3 73 41-113 24-97 (618)
267 PF06963 FPN1: Ferroportin1 (F 96.2 0.31 6.6E-06 41.7 14.3 164 35-209 9-195 (432)
268 KOG1479|consensus 96.1 0.23 4.9E-06 41.8 12.4 88 116-217 117-207 (406)
269 PF13000 Acatn: Acetyl-coenzym 96.0 0.056 1.2E-06 46.4 8.6 144 32-175 4-177 (544)
270 TIGR00939 2a57 Equilibrative N 95.6 0.5 1.1E-05 40.6 13.3 109 66-175 310-431 (437)
271 KOG3097|consensus 95.5 0.46 9.9E-06 38.8 11.6 102 73-175 68-184 (390)
272 TIGR00939 2a57 Equilibrative N 95.2 0.7 1.5E-05 39.7 12.8 96 115-218 105-200 (437)
273 KOG3810|consensus 93.3 0.24 5.1E-06 40.8 5.6 133 75-217 54-186 (433)
274 KOG0637|consensus 93.1 0.21 4.6E-06 42.5 5.3 113 66-178 335-470 (498)
275 PF01770 Folate_carrier: Reduc 93.0 0.95 2.1E-05 38.3 9.0 98 62-159 284-383 (412)
276 KOG1479|consensus 92.1 0.64 1.4E-05 39.1 6.8 107 65-172 284-399 (406)
277 KOG3880|consensus 91.2 0.16 3.4E-06 41.1 2.2 135 65-213 64-198 (409)
278 COG4262 Predicted spermidine s 90.4 9.4 0.0002 31.9 13.8 86 58-143 38-132 (508)
279 TIGR00769 AAA ADP/ATP carrier 89.9 13 0.00027 32.5 16.0 73 123-206 273-346 (472)
280 KOG4332|consensus 89.7 9.4 0.0002 30.8 11.0 134 65-209 284-426 (454)
281 TIGR00806 rfc RFC reduced fola 89.5 5 0.00011 35.0 9.9 97 64-160 299-397 (511)
282 TIGR00880 2_A_01_02 Multidrug 88.1 6.1 0.00013 26.9 8.4 43 64-106 88-130 (141)
283 KOG3880|consensus 87.0 2.2 4.7E-05 34.8 5.8 106 64-175 289-401 (409)
284 PF01733 Nucleoside_tran: Nucl 84.8 0.24 5.3E-06 40.3 -0.4 106 68-173 187-305 (309)
285 PF07672 MFS_Mycoplasma: Mycop 84.0 20 0.00042 28.5 11.3 101 69-170 147-257 (267)
286 PF03219 TLC: TLC ATP/ADP tran 81.8 36 0.00077 29.9 16.4 75 123-208 289-364 (491)
287 KOG3810|consensus 80.2 16 0.00034 30.6 8.2 94 66-159 274-369 (433)
288 PRK10263 DNA translocase FtsK; 79.7 68 0.0015 31.8 13.2 22 71-92 60-81 (1355)
289 KOG2601|consensus 78.4 24 0.00052 29.9 8.7 69 36-104 35-104 (503)
290 PF11947 DUF3464: Protein of u 77.4 9 0.00019 27.6 5.4 80 85-167 56-145 (153)
291 COG5336 Uncharacterized protei 73.3 18 0.00039 24.3 5.5 32 69-100 48-80 (116)
292 PF02694 UPF0060: Uncharacteri 66.3 16 0.00035 24.5 4.3 50 63-112 54-103 (107)
293 COG1268 BioY Uncharacterized c 64.6 35 0.00077 25.5 6.3 24 69-92 88-111 (184)
294 PF04281 Tom22: Mitochondrial 61.6 43 0.00092 23.8 6.0 25 141-165 60-84 (137)
295 COG1230 CzcD Co/Zn/Cd efflux s 60.5 92 0.002 25.4 12.5 75 31-111 28-105 (296)
296 PRK02237 hypothetical protein; 60.3 30 0.00065 23.3 4.7 49 64-112 57-105 (109)
297 PF02632 BioY: BioY family; I 60.2 45 0.00097 24.0 6.1 26 69-94 59-84 (148)
298 PRK14229 camphor resistance pr 58.5 54 0.0012 22.1 7.8 23 125-147 58-80 (108)
299 PF13000 Acatn: Acetyl-coenzym 57.9 73 0.0016 28.2 7.8 62 118-179 407-468 (544)
300 TIGR00926 2A1704 Peptide:H+ sy 56.6 68 0.0015 29.4 7.9 59 116-174 565-623 (654)
301 KOG1237|consensus 56.4 28 0.00061 31.2 5.4 64 115-178 457-520 (571)
302 COG4769 Predicted membrane pro 55.2 23 0.0005 25.8 3.8 50 72-127 82-131 (181)
303 PF05631 DUF791: Protein of un 52.0 1.4E+02 0.0031 25.0 9.5 61 28-90 245-305 (354)
304 PF07672 MFS_Mycoplasma: Mycop 51.9 8.4 0.00018 30.6 1.3 60 148-213 2-61 (267)
305 PF10785 NADH-u_ox-rdase: NADH 51.8 63 0.0014 20.8 5.5 42 75-116 30-78 (86)
306 TIGR00986 3a0801s05tom22 mitoc 51.6 53 0.0011 23.4 5.0 24 140-163 57-80 (145)
307 KOG3574|consensus 51.2 1.1E+02 0.0024 26.3 7.6 60 121-180 374-433 (510)
308 KOG4830|consensus 50.0 12 0.00025 30.0 1.8 57 40-96 29-94 (412)
309 TIGR01667 YCCS_YHJK integral m 50.0 2.2E+02 0.0047 26.5 12.6 52 81-132 41-97 (701)
310 COG3202 ATP/ADP translocase [E 49.0 1.9E+02 0.0041 25.6 15.2 80 121-211 289-370 (509)
311 PF01733 Nucleoside_tran: Nucl 48.5 5.8 0.00013 32.3 0.0 41 124-169 5-45 (309)
312 TIGR03802 Asp_Ala_antiprt aspa 48.0 1.6E+02 0.0034 26.6 8.7 83 64-148 451-534 (562)
313 TIGR01666 YCCS hypothetical me 47.1 2.4E+02 0.0053 26.2 12.9 50 83-132 43-97 (704)
314 PF11299 DUF3100: Protein of u 45.7 31 0.00068 26.8 3.5 100 54-175 130-229 (241)
315 COG2233 UraA Xanthine/uracil p 45.5 58 0.0013 28.2 5.4 73 32-106 20-92 (451)
316 COG2119 Predicted membrane pro 45.4 93 0.002 23.3 5.7 39 70-108 141-179 (190)
317 TIGR00801 ncs2 uracil-xanthine 43.5 2.1E+02 0.0046 24.5 9.2 35 55-90 30-64 (415)
318 PHA03242 envelope glycoprotein 42.7 2.2E+02 0.0047 24.6 8.2 37 112-148 244-280 (428)
319 PRK11588 hypothetical protein; 41.6 2.4E+02 0.0052 25.0 8.6 32 84-115 137-170 (506)
320 PF06912 DUF1275: Protein of u 41.2 1.6E+02 0.0034 22.3 14.5 37 70-106 53-92 (209)
321 PRK03818 putative transporter; 41.0 2.7E+02 0.0059 25.0 9.9 83 64-147 436-520 (552)
322 PF00860 Xan_ur_permease: Perm 40.8 1.4E+02 0.0031 25.3 7.1 92 57-152 28-126 (389)
323 PF04474 DUF554: Protein of un 37.8 1.3E+02 0.0028 23.5 5.7 54 72-125 11-64 (226)
324 KOG3097|consensus 37.3 20 0.00043 29.8 1.4 44 63-106 310-353 (390)
325 PF02990 EMP70: Endomembrane p 35.7 3.2E+02 0.0069 24.3 9.0 32 61-92 291-326 (521)
326 COG1811 Uncharacterized membra 35.5 1.9E+02 0.004 22.4 6.1 52 73-124 13-64 (228)
327 PF13829 DUF4191: Domain of un 34.7 2.1E+02 0.0045 22.3 6.4 46 191-236 50-97 (224)
328 PRK03612 spermidine synthase; 33.2 2.9E+02 0.0064 24.6 8.1 44 63-106 145-190 (521)
329 PRK14214 camphor resistance pr 33.0 1.6E+02 0.0035 20.2 8.6 25 123-147 62-86 (118)
330 COG3086 RseC Positive regulato 32.2 1.9E+02 0.0042 20.7 6.4 42 57-98 66-107 (150)
331 PF08566 Pam17: Mitochondrial 31.6 2.2E+02 0.0047 21.2 7.7 7 58-64 72-78 (173)
332 PF07857 DUF1632: CEO family ( 31.4 79 0.0017 25.1 3.8 23 192-214 114-136 (254)
333 PF08611 DUF1774: Fungal prote 31.3 1.6E+02 0.0034 19.5 6.1 45 149-210 26-70 (97)
334 PRK04972 putative transporter; 31.1 4E+02 0.0086 24.0 9.3 43 64-108 63-105 (558)
335 PF06826 Asp-Al_Ex: Predicted 31.0 2.2E+02 0.0047 21.0 9.2 80 63-145 56-137 (169)
336 PF12273 RCR: Chitin synthesis 30.6 17 0.00038 25.3 0.1 6 194-199 2-7 (130)
337 PF07760 DUF1616: Protein of u 30.5 2.9E+02 0.0063 22.3 8.2 56 119-175 22-77 (287)
338 PLN02878 homogentisate phytylt 30.5 2.6E+02 0.0056 22.7 6.5 74 89-163 195-268 (280)
339 PHA03237 envelope glycoprotein 30.1 3.6E+02 0.0079 23.3 8.3 37 112-148 247-283 (424)
340 PF06379 RhaT: L-rhamnose-prot 29.8 3.3E+02 0.0072 22.7 7.7 57 44-100 51-107 (344)
341 PRK10599 calcium/sodium:proton 29.7 2.9E+02 0.0062 23.4 7.0 60 44-106 238-300 (366)
342 PF07456 Hpre_diP_synt_I: Hept 29.3 2.2E+02 0.0048 20.5 5.9 30 69-98 67-96 (148)
343 PF13940 Ldr_toxin: Toxin Ldr, 29.1 91 0.002 16.0 2.6 20 70-89 15-34 (35)
344 PRK14230 camphor resistance pr 29.0 2E+02 0.0042 19.8 6.9 22 125-146 62-83 (119)
345 PRK04972 putative transporter; 28.8 4.4E+02 0.0095 23.8 9.3 90 64-155 446-536 (558)
346 PHA03239 envelope glycoprotein 28.7 3.9E+02 0.0084 23.2 8.2 37 112-148 253-289 (429)
347 COG0861 TerC Membrane protein 28.1 3.1E+02 0.0067 21.8 9.2 41 116-156 16-56 (254)
348 PRK10297 PTS system N,N'-diace 28.1 1.1E+02 0.0023 26.8 4.4 24 190-213 404-427 (452)
349 TIGR02230 ATPase_gene1 F0F1-AT 27.9 1.9E+02 0.0041 19.3 5.6 15 81-95 60-75 (100)
350 PRK14206 camphor resistance pr 27.9 2.1E+02 0.0046 19.9 9.3 24 123-146 67-90 (127)
351 TIGR00844 c_cpa1 na(+)/h(+) an 27.8 5.4E+02 0.012 24.5 11.1 8 192-199 130-137 (810)
352 COG1288 Predicted membrane pro 27.6 1.1E+02 0.0023 26.5 4.2 33 188-220 214-248 (481)
353 PRK14219 camphor resistance pr 27.4 2.2E+02 0.0048 19.9 9.2 24 123-146 65-88 (132)
354 PRK14232 camphor resistance pr 26.9 2.2E+02 0.0047 19.6 7.9 24 124-147 61-84 (120)
355 COG2076 EmrE Membrane transpor 26.9 2E+02 0.0044 19.4 8.3 80 67-146 4-84 (106)
356 PF01810 LysE: LysE type trans 26.1 2.7E+02 0.0059 20.5 9.3 30 28-57 99-128 (191)
357 COG1742 Uncharacterized conser 26.0 74 0.0016 21.3 2.4 48 62-109 54-101 (109)
358 PRK14212 camphor resistance pr 25.9 2.3E+02 0.0051 19.7 9.0 25 123-147 66-90 (128)
359 PF11151 DUF2929: Protein of u 25.8 1.5E+02 0.0032 17.4 5.9 27 190-216 29-55 (57)
360 PF08080 zf-RNPHF: RNPHF zinc 25.7 23 0.0005 18.3 0.0 12 87-98 3-14 (36)
361 TIGR01625 YidE_YbjL_dupl AspT/ 25.3 2.7E+02 0.0058 20.2 6.0 32 64-95 57-88 (154)
362 KOG4255|consensus 25.2 4.2E+02 0.0091 22.4 7.3 97 50-147 33-143 (439)
363 PF13493 DUF4118: Domain of un 24.8 1.1E+02 0.0025 19.9 3.3 25 69-93 81-105 (105)
364 PRK14228 camphor resistance pr 24.6 2.4E+02 0.0053 19.4 8.7 23 125-147 66-88 (122)
365 PF05656 DUF805: Protein of un 24.4 2.3E+02 0.0049 19.1 8.1 14 87-100 6-19 (120)
366 TIGR03727 urea_t_UrtC_arc urea 24.2 4.2E+02 0.009 22.4 7.1 13 117-129 240-252 (364)
367 PF12805 FUSC-like: FUSC-like 23.3 3.9E+02 0.0085 21.4 10.2 15 115-129 22-36 (284)
368 PF00854 PTR2: POT family; In 23.2 2.3E+02 0.005 23.5 5.6 47 66-112 75-121 (372)
369 PF02659 DUF204: Domain of unk 23.0 1.8E+02 0.0039 17.3 4.9 26 78-103 39-64 (67)
370 PF05232 BTP: Bacterial Transm 22.9 1.4E+02 0.0029 18.2 3.0 44 50-93 21-64 (67)
371 COG5346 Predicted membrane pro 22.9 2.7E+02 0.0058 19.3 5.0 22 81-102 80-101 (136)
372 PF11283 DUF3084: Protein of u 22.7 1.4E+02 0.003 18.9 3.0 23 77-99 14-36 (79)
373 PRK03818 putative transporter; 22.4 5.8E+02 0.013 23.0 8.5 22 65-86 65-86 (552)
374 PLN02776 prenyltransferase 22.3 4.7E+02 0.01 21.9 8.3 22 91-112 74-95 (341)
375 PRK14208 camphor resistance pr 22.1 2.8E+02 0.0061 19.3 9.0 24 123-146 66-89 (126)
376 PRK14227 camphor resistance pr 22.1 2.8E+02 0.006 19.2 9.1 24 124-147 67-90 (124)
377 COG3389 Uncharacterized protei 22.1 3.2E+02 0.007 21.4 5.4 30 69-98 34-63 (277)
378 PF04341 DUF485: Protein of un 21.6 2.4E+02 0.0052 18.2 7.3 65 25-89 13-79 (91)
379 PRK14200 camphor resistance pr 21.4 2.9E+02 0.0064 19.2 8.2 25 123-147 69-93 (127)
380 PF10183 ESSS: ESSS subunit of 21.4 2.6E+02 0.0057 18.7 4.5 30 188-217 55-85 (105)
381 PF11298 DUF3099: Protein of u 21.0 2.2E+02 0.0048 17.7 4.9 58 86-147 10-67 (73)
382 COG4177 LivM ABC-type branched 20.6 4.9E+02 0.011 21.5 10.3 58 117-176 209-267 (314)
383 PF03824 NicO: High-affinity n 20.4 3.5E+02 0.0077 21.6 5.9 38 118-155 3-40 (282)
384 PRK13743 conjugal transfer pro 20.2 3.2E+02 0.0069 19.2 5.3 49 38-86 53-101 (141)
385 PRK07419 1,4-dihydroxy-2-napht 20.1 4.9E+02 0.011 21.3 10.6 10 143-152 138-147 (304)
386 PRK10697 DNA-binding transcrip 20.0 2E+02 0.0044 19.8 3.7 9 210-218 60-68 (118)
387 PRK08168 NADH dehydrogenase su 20.0 6.4E+02 0.014 22.6 12.0 55 74-129 81-135 (516)
388 PF12911 OppC_N: N-terminal TM 20.0 1.9E+02 0.004 16.4 3.3 26 85-110 7-32 (56)
No 1
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.96 E-value=2.9e-28 Score=215.37 Aligned_cols=223 Identities=38% Similarity=0.673 Sum_probs=193.0
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHH
Q psy6455 18 AAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLI 97 (249)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~ 97 (249)
++....+++|.+++++.++.+..++....++..+|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||++++
T Consensus 157 ~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~li 236 (742)
T TIGR01299 157 QECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLL 236 (742)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 44556788888888888888888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 98 GALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
++.++.+++.++++++++++.++++|++.|++.|+..+...+++.|++|++.|++.+++.+.++.+|.++++.++..+..
T Consensus 237 i~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~ 316 (742)
T TIGR01299 237 ICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP 316 (742)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877653
Q ss_pred ccccc-c-CcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChHHHHHHHHHHHhhc
Q psy6455 178 LNLRI-E-TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240 (249)
Q Consensus 178 ~~~~~-~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (249)
..+.. . .......+||+.+++.+++.++..++.+++||+|+|...+++.+++.+.++++.+.+
T Consensus 317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 22100 0 001123579999999988888888778889999999988888888888887776554
No 2
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.94 E-value=1.2e-25 Score=194.13 Aligned_cols=220 Identities=20% Similarity=0.290 Sum_probs=177.6
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc
Q psy6455 17 LAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDF-----GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG 91 (249)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G 91 (249)
.++.++.+++++.+.++.++.+..+++...++...|.+.+++ +.+..+.+++.+.+.++..++++++|+++||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G 84 (502)
T TIGR00887 5 ADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG 84 (502)
T ss_pred hhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355677788888888888999999999999998888776542 344556789999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHH
Q psy6455 92 RKITLIGALLVDGLCGIASSVAQY------YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGI 165 (249)
Q Consensus 92 rr~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 165 (249)
||++++++.++..++.+++.++++ ++.+++.|++.|++.|...+....+++|++|+++|++++++.+....+|.
T Consensus 85 rr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~ 164 (502)
T TIGR00887 85 RKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI 164 (502)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 999999999999999888887654 78899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccc-c--Cc---------ccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChH-HHHHH
Q psy6455 166 IVLPAVAWLLIPLNLRI-E--TP---------YFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYD-QALDI 232 (249)
Q Consensus 166 ~~~~~l~~~l~~~~~~~-~--~~---------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 232 (249)
.+++.++..+....... + .. ....++||+.+.+.++++++..+..+++||+|+|...+++++ ++.+.
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~ 244 (502)
T TIGR00887 165 LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD 244 (502)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence 99998887664211000 0 00 001247999999988888888777888999999987766543 33443
Q ss_pred HHHH
Q psy6455 233 LRQM 236 (249)
Q Consensus 233 ~~~~ 236 (249)
+++.
T Consensus 245 ~~~~ 248 (502)
T TIGR00887 245 MSAV 248 (502)
T ss_pred HHHH
Confidence 4433
No 3
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.93 E-value=6.4e-25 Score=184.13 Aligned_cols=190 Identities=21% Similarity=0.335 Sum_probs=169.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455 22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL 101 (249)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (249)
.++++|+.+....+.++...++....++..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45567788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455 102 VDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR 181 (249)
Q Consensus 102 ~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 181 (249)
+.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-- 163 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW-- 163 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998886332
Q ss_pred ccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHH
Q psy6455 182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFL 220 (249)
Q Consensus 182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (249)
..+||+.|++.++..++..+.....||++++.
T Consensus 164 -------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 195 (405)
T TIGR00891 164 -------GDGWRALFFISILPIIFALWLRKNIPEAEDWK 195 (405)
T ss_pred -------CccHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 12599999887777666666566678876543
No 4
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.93 E-value=8.2e-25 Score=184.39 Aligned_cols=190 Identities=17% Similarity=0.243 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD 103 (249)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (249)
|.+|+.+..+++.+++...+....+...|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 44677788888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455 104 GLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE 183 (249)
Q Consensus 104 ~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 183 (249)
.++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++++....+|..+++.+++++.+...
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--- 160 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG--- 160 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999888888999999999999999999999999999999999998863210
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455 184 TPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 184 ~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
..+..+||+.|++.+++.++..++ .+++||+|+
T Consensus 161 --~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 161 --LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred --CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 002358999999988887766554 455688774
No 5
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.93 E-value=9.2e-25 Score=187.50 Aligned_cols=201 Identities=19% Similarity=0.317 Sum_probs=164.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--------CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHH
Q psy6455 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDF--------GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT 95 (249)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~ 95 (249)
+++++..+++.++.+..+++...+++..|.+.+++ +.+..+.+++.+.+.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44566677777788888888888888887777665 8888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHH
Q psy6455 96 LIGALLVDGLCGIASSVA------------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTG 163 (249)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~------------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 163 (249)
++++.++..++.+.+++. +.++.+++.|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999998888776652 23567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChH
Q psy6455 164 GIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYD 227 (249)
Q Consensus 164 g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (249)
|..+++.++..+...... ..-+..+||+.|++.+++.++..+..+++||+|++...+++.+
T Consensus 168 G~~~~~~~~~~~~~~~~~---~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~ 228 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDA---SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQE 228 (479)
T ss_pred HHHHHHHHHHHHhccCcc---cccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHH
Confidence 999998887766432100 0002468999999988888887776777899987654444433
No 6
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.93 E-value=6.2e-25 Score=179.03 Aligned_cols=177 Identities=20% Similarity=0.228 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455 27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 106 (249)
+..++.+.++.|..+.........+|.+.+|+|+|...+|+..+.|.++..+++++...+.||+.||++++....++.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 44556666777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455 107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186 (249)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 186 (249)
.+++++++|++.++++|++.|+..|...+...++..++.|+++|++++++...+..++.++|..++.++.
T Consensus 92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig---------- 161 (394)
T COG2814 92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG---------- 161 (394)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccchhHHHHHHHHHHHHHHHHH-hhccc
Q psy6455 187 FLYSSWNLFVTLVSVPSILLALW-LTRFP 214 (249)
Q Consensus 187 ~~~~~w~~~~~~~~~~~~~~~~~-~~~~~ 214 (249)
+..|||+.|++.+.+.++..+. +..+|
T Consensus 162 -~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 162 -QLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5679999999999999998887 44467
No 7
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.92 E-value=4.1e-24 Score=181.39 Aligned_cols=185 Identities=17% Similarity=0.233 Sum_probs=161.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q psy6455 23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV 102 (249)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (249)
+..++..+....+.++...+.....+..+|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~ 97 (434)
T PRK11663 18 RYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence 34455566666667777777777888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455 103 DGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI 182 (249)
Q Consensus 103 ~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 182 (249)
..++.+++.++++++.+++.|++.|++.|...+...+++.|++|+++|++++++++.+..+|..++|.+.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~------ 171 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA------ 171 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999887
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455 183 ETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
+..+||+.|++.+++.++..+. .++++|+|+
T Consensus 172 -----~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~ 203 (434)
T PRK11663 172 -----LHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQ 203 (434)
T ss_pred -----HcccHHHHHHHHHHHHHHHHHHHHHHcCCCHh
Confidence 4468999999988776655443 445677664
No 8
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.92 E-value=3.3e-24 Score=183.19 Aligned_cols=185 Identities=25% Similarity=0.287 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCC--------CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455 30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMT--------SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL 101 (249)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (249)
.+++.+..+...++...+....+.+..+++.+ ..+.+++.+.+.++..++++++|+++||+|||++++++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~ 109 (481)
T TIGR00879 30 SLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIAL 109 (481)
T ss_pred HHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHH
Confidence 33444454556667777778888887777666 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh---HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH---HHH
Q psy6455 102 VDGLCGIASSVAQ---YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA---WLL 175 (249)
Q Consensus 102 ~~~i~~~~~~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~---~~l 175 (249)
+..++.+++.+.. +++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|..+++.++ ...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 189 (481)
T TIGR00879 110 LFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL 189 (481)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999988885543 4568999999999999999999999999999999999999999999999999999998 443
Q ss_pred hcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCC
Q psy6455 176 IPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGE 225 (249)
Q Consensus 176 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (249)
. +..+||+.|++.++..++..+..+++||+|++...+++
T Consensus 190 ~-----------~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 228 (481)
T TIGR00879 190 N-----------NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR 228 (481)
T ss_pred C-----------CCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC
Confidence 2 34699999999777777776667778988765444333
No 9
>TIGR00895 2A0115 benzoate transport.
Probab=99.92 E-value=1.2e-23 Score=175.81 Aligned_cols=190 Identities=24% Similarity=0.435 Sum_probs=164.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHH
Q psy6455 20 AGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGA 99 (249)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~ 99 (249)
.+.++++++.+....+..+..++.....++..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 88 (398)
T TIGR00895 9 QPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWS 88 (398)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHH
Confidence 34455566667777777777777788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 100 LLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 100 ~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
.++..++.++..+.++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--- 165 (398)
T TIGR00895 89 ILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI--- 165 (398)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh---
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChhHH
Q psy6455 180 LRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPKFL 220 (249)
Q Consensus 180 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 220 (249)
+..+|++.+++.++..++..++ ..++||++++.
T Consensus 166 --------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (398)
T TIGR00895 166 --------PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL 199 (398)
T ss_pred --------hcccceeehhhhhhHHHHHHHHHHHhCCCCChHH
Confidence 4468999998886555554444 55577776543
No 10
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.92 E-value=4.4e-24 Score=183.95 Aligned_cols=181 Identities=18% Similarity=0.169 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q psy6455 26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL 105 (249)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 105 (249)
+|..+..+++..+....+..+++..+|.+.+++|.+.++.+|+.+.+.++..++++++|+++||+|||++++.+.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45667788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy6455 106 CGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQ-PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIET 184 (249)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 184 (249)
+.++++++++++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|..+||.+++++.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~-------- 155 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL-------- 155 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 9999999999999999999999999988887777776665 6789999999999999999999999999998
Q ss_pred cccccchhHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455 185 PYFLYSSWNLFVTLVSVPSILLALW-LTRFPESP 217 (249)
Q Consensus 185 ~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~ 217 (249)
+..+||+.|++...+.++..++ .+++|+++
T Consensus 156 ---~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 156 ---EHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred ---ccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4569999999987777666555 34456654
No 11
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.92 E-value=8.4e-24 Score=177.93 Aligned_cols=186 Identities=22% Similarity=0.287 Sum_probs=165.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD 103 (249)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (249)
+++|..+.+..+..+..+++....+...|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF 90 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 46777788888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455 104 GLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE 183 (249)
Q Consensus 104 ~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 183 (249)
.++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------- 163 (406)
T PRK11551 91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA------- 163 (406)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 9998888899999999999999999999989999999999999999999999999999999999999988775
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHH-hhcccCChhHH
Q psy6455 184 TPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPKFL 220 (249)
Q Consensus 184 ~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 220 (249)
+..+|++.|++.+++.++..+. ..++||++++.
T Consensus 164 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (406)
T PRK11551 164 ----GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFA 197 (406)
T ss_pred ----cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 4468999999887766655544 44578876543
No 12
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.1e-24 Score=175.98 Aligned_cols=189 Identities=16% Similarity=0.209 Sum_probs=175.5
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHH
Q psy6455 19 AAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG 98 (249)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~ 98 (249)
+...++++++++....+++....+.....+...|.+.++.++|.++.|++.+.+++.+.++-.+.|.++||.+.|..+..
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~ 99 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH--HHHh
Q psy6455 99 ALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA--WLLI 176 (249)
Q Consensus 99 ~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~l~ 176 (249)
++++.++.+++++++++++.+.+..++.|+.+|...|++...+..|+|+++||+..+++++..++|+.+.|.+. +++.
T Consensus 100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988 6665
Q ss_pred cccccccCcccccchhHHHHHHHHHHHHHHHHHhhc-ccCChh
Q psy6455 177 PLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPESPK 218 (249)
Q Consensus 177 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~ 218 (249)
.+.+||..|++.++++++..++.++ .+|+|+
T Consensus 180 -----------~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 180 -----------FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred -----------hccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4459999999999999888877444 677765
No 13
>PRK03545 putative arabinose transporter; Provisional
Probab=99.92 E-value=1.1e-23 Score=176.44 Aligned_cols=180 Identities=17% Similarity=0.121 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455 27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 106 (249)
|..+..+.++.+..........+.+|.+.+++|.|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS 87 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 43334444444444444445566789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455 107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186 (249)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 186 (249)
.+.+.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.
T Consensus 88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~---------- 157 (390)
T PRK03545 88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG---------- 157 (390)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH----------
Confidence 9999999999999999999999988888888999999999999999999999999999999999999886
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhh-cccCCh
Q psy6455 187 FLYSSWNLFVTLVSVPSILLALWLT-RFPESP 217 (249)
Q Consensus 187 ~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~ 217 (249)
+..+||+.|++.+++.++..+..+ ..||.+
T Consensus 158 -~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 158 -QYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred -HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 446999999999888777765533 356543
No 14
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.92 E-value=1.8e-23 Score=179.98 Aligned_cols=191 Identities=19% Similarity=0.263 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcc-hhhH-----HHHhHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q psy6455 27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSD-KGWL-----NAAPMLGMVFGSYFWGCLADTQGRKITLIGAL 100 (249)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~-----~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~ 100 (249)
++.+....++++...++...++...|.+.++++.+.+. .+++ .++..++..+++++.|+++||+|||++++++.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34566777888899999999999999998888654433 2222 46777899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHH--------HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 101 LVDGLCGIASSVAQYYGV--------FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA 172 (249)
Q Consensus 101 ~~~~i~~~~~~~~~~~~~--------l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 172 (249)
++.+++.++++++++++. +++.|+++|++.|+.++...++++|++|+++|++..++.+.+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998764 789999999999999999999999999999999999999888888888888766
Q ss_pred HHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHH
Q psy6455 173 WLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFL 220 (249)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (249)
..+...... ......+||+.|++.+++.++..++...+||+|++.
T Consensus 175 ~~~~~~~~~---~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~ 219 (490)
T PRK10642 175 VLISTIVGE---ANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQ 219 (490)
T ss_pred HHHHHhcCH---HHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHH
Confidence 554321100 000246999999998776666555556689988764
No 15
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.92 E-value=5.2e-24 Score=176.59 Aligned_cols=168 Identities=17% Similarity=0.101 Sum_probs=139.9
Q ss_pred HHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455 40 AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVF 119 (249)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l 119 (249)
.......+++.+|.+.+|+|+|..+.+++.+.+.+++.+++++.|+++||+|||++++.+......+.......++++.+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34556778889999999999999999999999999999999999999999999988776655555543323333689999
Q ss_pred HHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHH
Q psy6455 120 LALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLV 199 (249)
Q Consensus 120 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~ 199 (249)
++.|++.|++.+. .......++|++|+++|++++++.+.+..+|.++++.+++++. +..+||+.|++.
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~-----------~~~gWr~~f~~~ 150 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY-----------TAGGLQLLIIPI 150 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HccchHHHHHHH
Confidence 9999999999886 4555666799999999999999999999999999999999997 446999999998
Q ss_pred HHHHHHHHHH-hhcccCChhH
Q psy6455 200 SVPSILLALW-LTRFPESPKF 219 (249)
Q Consensus 200 ~~~~~~~~~~-~~~~~~~~~~ 219 (249)
+++.++..++ .+++||+|++
T Consensus 151 ~~l~~~~~~~~~~~lp~~p~~ 171 (368)
T TIGR00903 151 AAVAAAGIILVLAALPALPFQ 171 (368)
T ss_pred HHHHHHHHHHHHHHcCCCCCC
Confidence 8877666554 5557887754
No 16
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.92 E-value=2e-23 Score=176.65 Aligned_cols=185 Identities=21% Similarity=0.279 Sum_probs=161.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q psy6455 23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV 102 (249)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (249)
++++++.+..+.+.++..+++.....+..|.+.+++|+++.+.+++.+.+.++..+++++.|+++||+|||++++++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~ 92 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA 92 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 35566667788888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455 103 DGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI 182 (249)
Q Consensus 103 ~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 182 (249)
.+++.+++.++++++.++++|++.|++.+..++....++.|++|+++|+++.++.+.+..+|.++++.+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~------ 166 (426)
T PRK12307 93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA------ 166 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHhhcccCChh
Q psy6455 183 ETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPK 218 (249)
Q Consensus 183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
+..+||+.|++..+..++........||+++
T Consensus 167 -----~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~ 197 (426)
T PRK12307 167 -----EAYGWRAAFFVGLLPVLLVIYIRARAPESKE 197 (426)
T ss_pred -----ccCCHHHHHHHHHHHHHHHHHHHHHCCCChH
Confidence 4468999998865544443333333566544
No 17
>TIGR00898 2A0119 cation transport protein.
Probab=99.91 E-value=1.6e-23 Score=181.03 Aligned_cols=176 Identities=27% Similarity=0.507 Sum_probs=158.7
Q ss_pred hhccccccccCCC---CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455 49 FVLPSAQCDFGMT---SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI 125 (249)
Q Consensus 49 ~~~~~~~~~~~~s---~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l 125 (249)
+..|.+.+|++++ ..+.+++.+.+.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5678889999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHH
Q psy6455 126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL 205 (249)
Q Consensus 126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 205 (249)
.|++.+...+...+++.|++|+++|+.+.++.+.+..+|.++++.++..+. +||+.+++.+++.++
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------------~wr~~~~~~~i~~~~ 255 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--------------DWRWLQLAVSLPTFL 255 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887763 599999999998888
Q ss_pred HHHHhhcccCChhHHHhhCChHHHHHHHHHHHh
Q psy6455 206 LALWLTRFPESPKFLFECGEYDQALDILRQMFS 238 (249)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (249)
..+..+++||+|++...+++.+++.+.+++..+
T Consensus 256 ~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~ 288 (505)
T TIGR00898 256 FFLLSWFVPESPRWLISQGRIEEALKILQRIAK 288 (505)
T ss_pred HHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHH
Confidence 877777889999988777777666665555443
No 18
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.91 E-value=3.7e-23 Score=175.44 Aligned_cols=193 Identities=17% Similarity=0.172 Sum_probs=150.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccC---CCCcchhh---HHHHhHHHHHHHHHHHHhhhhhcchhHHHH
Q psy6455 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFG---MTSSDKGW---LNAAPMLGMVFGSYFWGCLADTQGRKITLI 97 (249)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~---~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~ 97 (249)
+++++.+....++.+...++...++...|.+.++++ .+..+.+. +.+..+++..++++++|+++||+|||+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~ 97 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344555666677888899999999999999999875 44443333 344455566699999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy6455 98 GALLVDGLCGIASSVAQYY--------GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLP 169 (249)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~~--------~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 169 (249)
++.++..++.+++++++++ ..+++.|+++|++.|..++...++++|++|+++|++..++.+.+...|..+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887765 36889999999999999999999999999999999999998888888888887
Q ss_pred HHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhH
Q psy6455 170 AVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKF 219 (249)
Q Consensus 170 ~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (249)
.+...+...... ......+||+.|++.+++.++..++....||++++
T Consensus 178 ~~~~~~~~~~~~---~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~ 224 (432)
T PRK10406 178 LVVVVLQQTLED---AELREWGWRIPFALGAVLAVVALWLRRQLDETSQQ 224 (432)
T ss_pred HHHHHHHHhCCH---HHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 766554321100 00023699999999888887766555557887654
No 19
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.91 E-value=4.6e-23 Score=172.82 Aligned_cols=181 Identities=17% Similarity=0.191 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q psy6455 26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL 105 (249)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 105 (249)
.|+.+..+.++.+......+.....+|.+.+++|.++++.++..+.+.++..+++++.|+++||+|||++++.+.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 45554555555555455555566678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Q psy6455 106 CGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP 185 (249)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 185 (249)
+.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+.
T Consensus 98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~--------- 168 (394)
T PRK10213 98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG--------- 168 (394)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhh-cccCCh
Q psy6455 186 YFLYSSWNLFVTLVSVPSILLALWLT-RFPESP 217 (249)
Q Consensus 186 ~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~ 217 (249)
+..+||+.|++.+++.++..+... ..||++
T Consensus 169 --~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 169 --ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred --hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 446999999998877766555433 356654
No 20
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.91 E-value=5.1e-23 Score=173.52 Aligned_cols=174 Identities=19% Similarity=0.193 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q psy6455 34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA 113 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 113 (249)
.+..+..........+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.++..++.+++.++
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT 101 (413)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence 33344455666777888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455 114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN 193 (249)
Q Consensus 114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~ 193 (249)
++++.++++|+++|++.+...+....++.|.+|+++|++++++.+....+|..++|.+++.+. +..+||
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~-----------~~~gw~ 170 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM-----------HFVHWK 170 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCHH
Confidence 999999999999999887766777788999999999999999999999999999999999886 446999
Q ss_pred HHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455 194 LFVTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
+.|++.++..++..+. .+.+||+++
T Consensus 171 ~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999998888777665 445787643
No 21
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.90 E-value=9.8e-23 Score=175.71 Aligned_cols=186 Identities=20% Similarity=0.350 Sum_probs=163.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q psy6455 23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV 102 (249)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (249)
++.+++.+..+.+..+...++.....+.+|.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34566777778888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455 103 DGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI 182 (249)
Q Consensus 103 ~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 182 (249)
.+++.+++.++++++.+++.|++.|++.+..++....++.|.+|+++|+++.++......+|..++|.+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------ 168 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV------ 168 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999887
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhH
Q psy6455 183 ETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKF 219 (249)
Q Consensus 183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (249)
+..+||+.|++.++..++..+.....||++++
T Consensus 169 -----~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~ 200 (496)
T PRK03893 169 -----PVWGWRALFFIGILPIIFALWLRKNLPEAEDW 200 (496)
T ss_pred -----ccCCHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 44699999987655554444444456776543
No 22
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.90 E-value=9.6e-23 Score=170.01 Aligned_cols=176 Identities=20% Similarity=0.345 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS 111 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 111 (249)
.+....+..........+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 9 LLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 33333455566677777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455 112 VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS 191 (249)
Q Consensus 112 ~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~ 191 (249)
++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+. +..+
T Consensus 89 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-----------~~~~ 157 (385)
T TIGR00710 89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL-----------VWLS 157 (385)
T ss_pred HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999886 4468
Q ss_pred hHHHHHHHHHHHHHHHHHh-hcccCChh
Q psy6455 192 WNLFVTLVSVPSILLALWL-TRFPESPK 218 (249)
Q Consensus 192 w~~~~~~~~~~~~~~~~~~-~~~~~~~~ 218 (249)
||+.+++.++..++..+.. ++.||+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 158 WHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999998887777666654 34566543
No 23
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.90 E-value=8e-24 Score=181.19 Aligned_cols=199 Identities=13% Similarity=0.112 Sum_probs=163.2
Q ss_pred cHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc
Q psy6455 12 TFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG 91 (249)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G 91 (249)
+.++.+.+...++..+..+....+.++....+...++...|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g 92 (467)
T PRK09556 13 DLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKN 92 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccC
Confidence 33444444445566677777788888888888888999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHH
Q psy6455 92 RKITLIGALLVDGLCGIASSV-----AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGII 166 (249)
Q Consensus 92 rr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 166 (249)
||+++.++.++.++..+..++ +++++.+++.|++.|++.+...+....+++|++|+++|++++++++.+..+|.+
T Consensus 93 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~ 172 (467)
T PRK09556 93 TKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA 172 (467)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh
Confidence 999998888887777665554 578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhh-cccCChh
Q psy6455 167 VLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLT-RFPESPK 218 (249)
Q Consensus 167 ~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~ 218 (249)
+++.+..++.... ...+|+..|.+.+++.++..+..+ +.+++|+
T Consensus 173 l~~~i~~~~~~~~--------~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 173 GAGGVALWGANYF--------FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE 217 (467)
T ss_pred HHHHHHHHHHHhh--------ccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 9998887665321 113689888888877776655533 3455553
No 24
>KOG0254|consensus
Probab=99.89 E-value=2.5e-22 Score=173.74 Aligned_cols=166 Identities=27% Similarity=0.451 Sum_probs=150.4
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccc
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGE 143 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~ 143 (249)
+.+|+.+...++..+++++.|+++|++|||+.++++.++..++.+++++++|++.++++|++.|+|.|......+.+++|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhh
Q psy6455 144 FQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFEC 223 (249)
Q Consensus 144 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (249)
+.|++.||...+..+....+|..++..++....+. ..+||..+.+..+++++..+..++.||+|++..++
T Consensus 170 iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~----------~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~ 239 (513)
T KOG0254|consen 170 IAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV----------YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEK 239 (513)
T ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC----------CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHc
Confidence 99999999999999999999999995555444210 04899999999999999988888889999999998
Q ss_pred CChHHHHHHHHHHHhh
Q psy6455 224 GEYDQALDILRQMFSA 239 (249)
Q Consensus 224 ~~~~~~~~~~~~~~~~ 239 (249)
++.+++++.++++...
T Consensus 240 g~~~~a~~~l~~l~g~ 255 (513)
T KOG0254|consen 240 GRLEEAKRSLKRLRGL 255 (513)
T ss_pred CChHHHHHHHHHHhCC
Confidence 8888888888888763
No 25
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.89 E-value=4.5e-22 Score=167.50 Aligned_cols=184 Identities=18% Similarity=0.151 Sum_probs=156.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD 103 (249)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (249)
+..+.......+..+...+....+.+.+|.+.+++|.|..+.++..+.+.+++.+++++.|+++||+|||++++.+.++.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 33444555555666666667777778888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455 104 GLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE 183 (249)
Q Consensus 104 ~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 183 (249)
.++.+.+.++++++.+++.|++.|++.+...+...+++.|.+|+++|.+..++......++..++|.+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~------- 161 (406)
T PRK15402 89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI------- 161 (406)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 9999998899999999999999999988888888899999999999999999988888889999999999886
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHh-hcccCChh
Q psy6455 184 TPYFLYSSWNLFVTLVSVPSILLALWL-TRFPESPK 218 (249)
Q Consensus 184 ~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~ 218 (249)
+..+||+.+++.++..++..+.. +..||+++
T Consensus 162 ----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 162 ----HVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred ----HccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 34589999998888877766653 34676643
No 26
>PRK03699 putative transporter; Provisional
Probab=99.89 E-value=6.6e-22 Score=165.90 Aligned_cols=176 Identities=15% Similarity=0.136 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q psy6455 26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL 105 (249)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 105 (249)
|++....+.+..+..+......+..+|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||++++.+.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666677777888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Q psy6455 106 CGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP 185 (249)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 185 (249)
+.+++.++++++.+++.|++.|++.+...+....++.|++|+++|+++.+..+....+|..++|.+.+.+..
T Consensus 85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------- 156 (394)
T PRK03699 85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA-------- 156 (394)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 999999999999999999999999998888889999999999999999999888889999999998887752
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhh
Q psy6455 186 YFLYSSWNLFVTLVSVPSILLALWLT 211 (249)
Q Consensus 186 ~~~~~~w~~~~~~~~~~~~~~~~~~~ 211 (249)
+..+||+.|.+.+++.++..++.+
T Consensus 157 --~~~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 157 --RSIEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHH
Confidence 236899999988887776655443
No 27
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.89 E-value=2.5e-22 Score=165.30 Aligned_cols=171 Identities=25% Similarity=0.353 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHhhcc-ccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q psy6455 35 LLYAYAAISITVLSFVLP-SAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA 113 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 113 (249)
++.+...+......+.+| .+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.++..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 445556666777788888 7889999999999999999999999999999999999999999999999999996666666
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455 114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN 193 (249)
Q Consensus 114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~ 193 (249)
++.+.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+. +..+||
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------~~~~~~ 151 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI-----------SYFGWR 151 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHCHHC
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh-----------hccccc
Confidence 777799999999999999999999999999999999999999999999999999999999987 446899
Q ss_pred HHHHHHHHHHHHHHHH-hhcccCC
Q psy6455 194 LFVTLVSVPSILLALW-LTRFPES 216 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~-~~~~~~~ 216 (249)
+.|++.+++.++..++ ..+++++
T Consensus 152 ~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 152 WAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHCCC---
T ss_pred cccccccchhhhhhhhHhhhhhhc
Confidence 9999999999888775 2334433
No 28
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.89 E-value=1.3e-22 Score=174.46 Aligned_cols=177 Identities=18% Similarity=0.233 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455 29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI 108 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 108 (249)
.+..+.+..+...++....++.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34556667777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Q psy6455 109 ASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFL 188 (249)
Q Consensus 109 ~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~ 188 (249)
++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++++....+|..++|.+++++. +
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----------~ 151 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII-----------E 151 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc-----------c
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred cchhHHHHHHHHHHHHHHHHHh-hcccCC
Q psy6455 189 YSSWNLFVTLVSVPSILLALWL-TRFPES 216 (249)
Q Consensus 189 ~~~w~~~~~~~~~~~~~~~~~~-~~~~~~ 216 (249)
..+||+.|++.+.+.++..++. ++.||+
T Consensus 152 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 152 NYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred CcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 4699999999887777666553 335554
No 29
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.89 E-value=5.1e-22 Score=165.92 Aligned_cols=176 Identities=15% Similarity=0.081 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy6455 31 IFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS 110 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 110 (249)
....+..+..+.......+.+|.+.+++|.+..+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~ 85 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF 85 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 34445556666677788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccc
Q psy6455 111 SVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYS 190 (249)
Q Consensus 111 ~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~ 190 (249)
.++++++.+++.|++.|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++++. +..
T Consensus 86 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------~~~ 154 (382)
T PRK10091 86 TLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS-----------QEF 154 (382)
T ss_pred HHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh-----------hhc
Confidence 999999999999999999999888888889999999999999999999999999999999999886 446
Q ss_pred hhHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455 191 SWNLFVTLVSVPSILLALW-LTRFPESP 217 (249)
Q Consensus 191 ~w~~~~~~~~~~~~~~~~~-~~~~~~~~ 217 (249)
+||+.|.+.+++.++..+. ..++||.+
T Consensus 155 gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 155 SWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8999999988877666554 34467653
No 30
>KOG1330|consensus
Probab=99.89 E-value=3.5e-24 Score=174.75 Aligned_cols=182 Identities=19% Similarity=0.180 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q psy6455 26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL 105 (249)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 105 (249)
.++...+.++.+.....+.+.+....+.+++.+|++++..|++.+.+.+.+++++|+.|+++||+.||+++.+|..++.+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~ 110 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL 110 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence 34566777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Q psy6455 106 CGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP 185 (249)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 185 (249)
+.+.++++..+|++.++|.+.|+|.+...+..+++++|.+|.++|++++++++++..+|..+|.+++..+.+..
T Consensus 111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~------ 184 (493)
T KOG1330|consen 111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT------ 184 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887543
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhcc-cCCh
Q psy6455 186 YFLYSSWNLFVTLVSVPSILLALWLTRF-PESP 217 (249)
Q Consensus 186 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~ 217 (249)
..|||.|...+++.+++.++.+++ +|++
T Consensus 185 ----~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 185 ----FWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred ----cceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 349999999999999998886654 5543
No 31
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.89 E-value=1.6e-22 Score=168.59 Aligned_cols=168 Identities=21% Similarity=0.259 Sum_probs=150.0
Q ss_pred HHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy6455 39 YAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGV 118 (249)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 118 (249)
....+...++...|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++..++.++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS 84 (399)
T ss_pred HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHH
Confidence 34456667777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHH
Q psy6455 119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTL 198 (249)
Q Consensus 119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~ 198 (249)
+++.|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+. +..+||+.|++
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------~~~~~~~~~~~ 153 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL-----------IHFSWQWAFII 153 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH-----------HhCCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876 44689999999
Q ss_pred HHHHHHHHHHHhh-cccCCh
Q psy6455 199 VSVPSILLALWLT-RFPESP 217 (249)
Q Consensus 199 ~~~~~~~~~~~~~-~~~~~~ 217 (249)
.+++.++..+..+ ..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 154 EGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHHHhhheecCCC
Confidence 8888777666544 345554
No 32
>PRK09952 shikimate transporter; Provisional
Probab=99.89 E-value=1.3e-21 Score=166.24 Aligned_cols=190 Identities=17% Similarity=0.185 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-ccccc--CCCCcchhhHH-----HHhHHHHHHHHHHHHhhhhhcchhHHHHH
Q psy6455 27 YILVIFGGLLYAYAAISITVLSFVLPS-AQCDF--GMTSSDKGWLN-----AAPMLGMVFGSYFWGCLADTQGRKITLIG 98 (249)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~-----~~~~i~~~i~~~~~g~l~dr~Grr~~~~~ 98 (249)
++.+....+.++...++...++...|. +.+++ +.++. .+++. +...++..+++++.|+++||+|||+++++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~ 99 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence 456677777888899999888887764 44444 56655 45543 34556678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy6455 99 ALLVDGLCGIASSVAQYYG--------VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPA 170 (249)
Q Consensus 99 ~~~~~~i~~~~~~~~~~~~--------~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 170 (249)
+.++.+++.++++++++++ .+++.|+++|++.|..++....++.|++|+++|++..+..+.+..+|..++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~ 179 (438)
T PRK09952 100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTG 179 (438)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 58889999999999999999999999999999999999999999999999887
Q ss_pred HHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHH
Q psy6455 171 VAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFL 220 (249)
Q Consensus 171 l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (249)
+...+...... ......+||+.|++.+++.++........||+|++.
T Consensus 180 ~~~~l~~~~~~---~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~ 226 (438)
T PRK09952 180 LVSLISMMTTD---EQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFE 226 (438)
T ss_pred HHHHHHHhCCH---HHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 77665422100 000236999999998877666544445578887653
No 33
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.88 E-value=1.7e-21 Score=163.41 Aligned_cols=181 Identities=16% Similarity=0.145 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455 27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 106 (249)
++.+....+...+..+......+.+|.+.+++|.|+.+.+++.+.+.++..++.+++|+++||+|||++++.+.++..++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 86 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence 44455555555566666677778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455 107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186 (249)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 186 (249)
.+.+.+.++++.+++.|++.|++.+...+....+..|.+++++|+++.++.+.+..++..++|.+++.+.
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---------- 156 (394)
T PRK11652 87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT---------- 156 (394)
T ss_pred HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 9988888999999999999999988777777788899999999999999999999999999999999886
Q ss_pred cccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455 187 FLYSSWNLFVTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 187 ~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
+..+||+.|++.++..++..+. .++.||+++
T Consensus 157 -~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 157 -TLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred -hccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 4458999999987776655444 445677543
No 34
>KOG0255|consensus
Probab=99.88 E-value=1.3e-21 Score=169.81 Aligned_cols=171 Identities=31% Similarity=0.452 Sum_probs=154.6
Q ss_pred cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccc
Q psy6455 56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLG 135 (249)
Q Consensus 56 ~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~ 135 (249)
+.++.+.....+..+.+.+|..+|++++|+++||+|||++++++.++.+++.++.++++|++.+++.|++.|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 44666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455 136 ICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPE 215 (249)
Q Consensus 136 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
....++.|++++++|+.+..+ ......++.+++..++++. .+||+.+++..++.++..+..++.||
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-------------~~Wr~~~~~~~~~~~~~~~~~~l~~E 256 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-------------RDWRWLFWIISIPSGLFLLLWFLPPE 256 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHHccCc
Confidence 999999999999999999999 7677777777777777775 48999999999999988888666789
Q ss_pred ChhHHHhhCChHHHHHHHHHHHhhc
Q psy6455 216 SPKFLFECGEYDQALDILRQMFSAN 240 (249)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (249)
+|+|+..+++.+++.+.+++..+.+
T Consensus 257 s~rwl~~~g~~~~a~~~l~~~a~~n 281 (521)
T KOG0255|consen 257 SPRWLLSKGRIDEAIKILKKIAKLN 281 (521)
T ss_pred ChHHHHHcCchHHHHHHHHHHHhhc
Confidence 9999999998888888888876654
No 35
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.88 E-value=9.6e-22 Score=168.31 Aligned_cols=186 Identities=13% Similarity=0.159 Sum_probs=159.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----------------------ccCCCCcchhhHHHHhHHHHHHH
Q psy6455 22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQC----------------------DFGMTSSDKGWLNAAPMLGMVFG 79 (249)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~~~i~~~i~ 79 (249)
..+.++.+..++.++......+....+...+.+.+ +++++..+.|++.+.+.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 44556677777777777778888888888877766 78899999999999999999999
Q ss_pred HHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHH
Q psy6455 80 SYFWGCLADTQGRKITLIGALLVDGLCGIASSVA--QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWL 157 (249)
Q Consensus 80 ~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 157 (249)
+++.|+++||+|||+++..+.++..++.+++.++ .+++.+++.|+++|++.+...+....+++|++|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999988888776544 45778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCccccc-chhHHHHHHHHHHHHHHHHHhhc-ccCChh
Q psy6455 158 EMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY-SSWNLFVTLVSVPSILLALWLTR-FPESPK 218 (249)
Q Consensus 158 ~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~ 218 (249)
+.+..+|..+++.+.+.+. +. .+||+.|++.+++.++..+.++. .+|+|+
T Consensus 173 ~~~~~~g~~i~~~l~~~l~-----------~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~ 224 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLC-----------ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS 224 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------hccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999887 34 38999999998888777666544 455554
No 36
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.88 E-value=2.6e-22 Score=166.53 Aligned_cols=163 Identities=13% Similarity=0.086 Sum_probs=141.7
Q ss_pred HHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6455 43 SITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLAL 122 (249)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 122 (249)
..+..++..|.+.+++|+|..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.+++.++++++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT 97 (377)
T ss_pred HHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHH
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVP 202 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~ 202 (249)
|++.|++.+..++.....+.|++| ++|+++.++...+..+|..+++.+.+.+. +..+||+.|++.+++
T Consensus 98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~f~~~~~~ 165 (377)
T TIGR00890 98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI-----------NLEGVPAAFIYMGII 165 (377)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH-----------hcccHHHHHHHHHHH
Confidence 999999999888888888888887 67999999999999999887666666554 346899999999888
Q ss_pred HHHHHHHhh-cccCCh
Q psy6455 203 SILLALWLT-RFPESP 217 (249)
Q Consensus 203 ~~~~~~~~~-~~~~~~ 217 (249)
.++..+..+ +.++++
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (377)
T TIGR00890 166 FLLVIVLGAFLIGYPP 181 (377)
T ss_pred HHHHHHHHHHheecCc
Confidence 877766544 344433
No 37
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.88 E-value=2e-21 Score=165.75 Aligned_cols=185 Identities=14% Similarity=0.212 Sum_probs=146.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455 22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL 101 (249)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (249)
.++++|..+....+............+..+|.+.++ |++..+.+++.+.+.+++.+++++.|+++||+|||++++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~ 101 (452)
T PRK11273 23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 101 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence 344455555545455555555555567778888887 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh----HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q psy6455 102 VDGLCGIASSVAQ----YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGII-VLPAVAWLLI 176 (249)
Q Consensus 102 ~~~i~~~~~~~~~----~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~l~ 176 (249)
+.+++.+.+++.+ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|.. .+|+++..+.
T Consensus 102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9998888877653 6778899999999999888888888899999999999999999999888864 4555443332
Q ss_pred cccccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455 177 PLNLRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 177 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
...+||+.|++.+++.++..++ .+++||+|+
T Consensus 182 -----------~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~ 213 (452)
T PRK11273 182 -----------WFNDWHAALYMPAFAAILVALFAFAMMRDTPQ 213 (452)
T ss_pred -----------HhccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence 1248999999988777665444 555677664
No 38
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.88 E-value=1.9e-21 Score=160.73 Aligned_cols=168 Identities=18% Similarity=0.045 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh
Q psy6455 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ 114 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 114 (249)
...+...+......+.+|.+..+++.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677777888888999999999999999999999999999999999999999999999888888887777
Q ss_pred -----HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455 115 -----YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY 189 (249)
Q Consensus 115 -----~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~ 189 (249)
+++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+. +.
T Consensus 86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------~~ 154 (365)
T TIGR00900 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY-----------AT 154 (365)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 89999999999999999999999999999999999999999999999999999999999987 44
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 190 SSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 190 ~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
.+||+.|++.++..++..+..+.+
T Consensus 155 ~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 155 LGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999988877776665554443
No 39
>PRK15075 citrate-proton symporter; Provisional
Probab=99.88 E-value=4.6e-21 Score=162.78 Aligned_cols=189 Identities=15% Similarity=0.136 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhH-HHHh-----HHHHHHHHHHHHhhhhhcchhHHHHHH
Q psy6455 26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWL-NAAP-----MLGMVFGSYFWGCLADTQGRKITLIGA 99 (249)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~-----~i~~~i~~~~~g~l~dr~Grr~~~~~~ 99 (249)
|++.....+++.+...++...+++..|.+.++++.++.+.+.. .+.. .++..+++++.|+++||+|||++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 3456777888999999999999999999999999888776543 2222 233357899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy6455 100 LLVDGLCGIASSVAQYYG--------VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAV 171 (249)
Q Consensus 100 ~~~~~i~~~~~~~~~~~~--------~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 171 (249)
.++..++..+++++++++ .+++.|+++|++.+...+....+++|++|+++|++++++.+....+|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 468899999999999888889999999999999999999998888888888888
Q ss_pred HHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455 172 AWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESP 217 (249)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
++.+....... ..+..+||+.|++..+...+..+.....||++
T Consensus 173 g~~l~~~~~~~---~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~ 215 (434)
T PRK15075 173 GYLLNQWLSPA---QMAEWGWRIPFLIGCLIVPFIFLIRRSLEETE 215 (434)
T ss_pred HHHHHHhCCHH---HHhccchHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 77764211000 00246899999876544333322233345554
No 40
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.87 E-value=1.9e-21 Score=166.84 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=152.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHH
Q psy6455 20 AGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGA 99 (249)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~ 99 (249)
...++++++.+.......+........+.+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~ 107 (476)
T PLN00028 28 FSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFL 107 (476)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 34555566666666667777777777788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 100 LLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 100 ~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
.++..++.++++++++++.+++.|++.|++.+... ....+++|++|+++|++++++.+....+|..+++.+.+.+....
T Consensus 108 ~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~ 186 (476)
T PLN00028 108 LMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLI 186 (476)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888999999999999999999877643 45567899999999999999988777777777766665443210
Q ss_pred ccccCcccccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455 180 LRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFP 214 (249)
Q Consensus 180 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
... +..+..+||+.|++.+++.++..+..++++
T Consensus 187 ~~~--~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 187 KDA--GAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred Hhc--CCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 000 000124899999999988877766655543
No 41
>PRK10504 putative transporter; Provisional
Probab=99.87 E-value=2.8e-21 Score=165.71 Aligned_cols=176 Identities=16% Similarity=0.180 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455 29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI 108 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 108 (249)
.+..+.+..++..++...+++.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 34455566777788888888999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Q psy6455 109 ASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFL 188 (249)
Q Consensus 109 ~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~ 188 (249)
.+.++++++.+++.|+++|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+++.+. +
T Consensus 91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~-----------~ 159 (471)
T PRK10504 91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV-----------E 159 (471)
T ss_pred HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----------h
Confidence 88888999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhc-ccC
Q psy6455 189 YSSWNLFVTLVSVPSILLALWLTR-FPE 215 (249)
Q Consensus 189 ~~~w~~~~~~~~~~~~~~~~~~~~-~~~ 215 (249)
..+||+.|.+......+..+.... .|+
T Consensus 160 ~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 160 YASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 468999999987776666555433 344
No 42
>PRK10133 L-fucose transporter; Provisional
Probab=99.87 E-value=4.3e-21 Score=162.85 Aligned_cols=153 Identities=20% Similarity=0.172 Sum_probs=136.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD 103 (249)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (249)
+.....+....+..+..++......+..|.+++++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 33444556666777777888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 104 GLCGIAS---SVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 104 ~i~~~~~---~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
+++.+++ .++++++.++++|+++|++.|...+..++++.|+.++++|...+++.+..+.+|..+++.++..+.
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998775 457899999999999999999999999999999877777777899999999999999999987664
No 43
>PRK12382 putative transporter; Provisional
Probab=99.87 E-value=4.3e-21 Score=160.82 Aligned_cols=174 Identities=18% Similarity=0.205 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455 31 IFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA 109 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 109 (249)
....+..+..........+.+|. +.+++|.|..+.+++.+.+.++..++++++|+++||+|||++++.+.+...++.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (392)
T PRK12382 18 FRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA 97 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 33434445555556666777776 56789999999999999999999999999999999999999999988877665443
Q ss_pred HH--------hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455 110 SS--------VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR 181 (249)
Q Consensus 110 ~~--------~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 181 (249)
.. ..++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~----- 172 (392)
T PRK12382 98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH----- 172 (392)
T ss_pred HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH-----
Confidence 21 13578899999999999998888888889999999999999999999999999999999999886
Q ss_pred ccCcccccchhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455 182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPE 215 (249)
Q Consensus 182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
+..+|++.+.+..+..++........||
T Consensus 173 ------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 200 (392)
T PRK12382 173 ------SHFGFAALALTTMVLPLLAWAFNGTVRK 200 (392)
T ss_pred ------hccChHHHHHHHHHHHHHHHHHHHhccC
Confidence 4458998877665554444333333344
No 44
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.87 E-value=5e-21 Score=160.42 Aligned_cols=173 Identities=23% Similarity=0.257 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q psy6455 34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA 113 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 113 (249)
....+..........+.+|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.++.+.++..++...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~ 88 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555566678999999999999999999999999999999999999999999999999999999999999889
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455 114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN 193 (249)
Q Consensus 114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~ 193 (249)
++.+.+++.|++.|++.+...+....++.|.+|+++|+++.++.+....++..++|.+++.+. +..+|+
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~-----------~~~g~~ 157 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM-----------LKFPWQ 157 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hCcChH
Confidence 999999999999999988888889999999999999999999999999999999999998876 346899
Q ss_pred HHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455 194 LFVTLVSVPSILLALW-LTRFPESP 217 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~-~~~~~~~~ 217 (249)
+.+++.+++.++..++ .+..||++
T Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 158 SLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999988777766655 44466654
No 45
>PRK11043 putative transporter; Provisional
Probab=99.87 E-value=4.6e-21 Score=161.11 Aligned_cols=170 Identities=18% Similarity=0.220 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy6455 37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY 116 (249)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 116 (249)
.....+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||++++.+.++..++.+.+.+++++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 94 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA 94 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34444556667777888889999999999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455 117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV 196 (249)
Q Consensus 117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~ 196 (249)
+.+++.|++.|++.+...+...+++.|.+|++++++..+.......++..++|.+++++. +..+||+.|
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~-----------~~~g~~~~~ 163 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL-----------NHFGWQAIF 163 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCChHHHH
Confidence 999999999999888777777888999999999999999888888999999999999987 446899999
Q ss_pred HHHHHHHHHHHHHhhcccCCh
Q psy6455 197 TLVSVPSILLALWLTRFPESP 217 (249)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~ 217 (249)
++.+++.++..+..++++|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 164 ATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 998888887777665565543
No 46
>KOG0569|consensus
Probab=99.87 E-value=7.3e-21 Score=159.63 Aligned_cols=168 Identities=24% Similarity=0.320 Sum_probs=146.0
Q ss_pred hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhhhccccccccccc
Q psy6455 65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV---AQYYGVFLALRFINGFAVTGTLGICFPYL 141 (249)
Q Consensus 65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~ 141 (249)
-+.+++.+.+|.++|+.+.|+++||+|||..+.++.++..++.+++.+ .+++++++++|++.|+..|......+.|+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 367789999999999999999999999999999998888888776665 46899999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHH
Q psy6455 142 GEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLF 221 (249)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (249)
.|..|++.||....+.+.+..+|..++..++..-.- ++...|++.+....+++++..+...++||+|++..
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il---------Gt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll 212 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL---------GTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLL 212 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc---------CCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 999999999999999999999999999766533221 14468999999999999999999999999999988
Q ss_pred h-hCChHHHHHHHHHHHhhcC
Q psy6455 222 E-CGEYDQALDILRQMFSANT 241 (249)
Q Consensus 222 ~-~~~~~~~~~~~~~~~~~~~ 241 (249)
. +++.++++++++.++.+++
T Consensus 213 ~~k~~~~~A~~sl~~y~G~~~ 233 (485)
T KOG0569|consen 213 IKKGDEEEARKALKFYRGKED 233 (485)
T ss_pred HHcCCHHHHHHHHHHHhCCCc
Confidence 7 6777888888887766553
No 47
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.87 E-value=3.7e-21 Score=161.56 Aligned_cols=175 Identities=17% Similarity=0.129 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455 30 VIFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI 108 (249)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 108 (249)
+....+..+..........+.+|. +.+++|.|..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 96 (399)
T PRK05122 17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL 96 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence 334445556666677777788886 5678999999999999999999999999999999999999999999988877766
Q ss_pred HHHhh--------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy6455 109 ASSVA--------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180 (249)
Q Consensus 109 ~~~~~--------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 180 (249)
.+.++ .+++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|.++++.+++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~---- 172 (399)
T PRK05122 97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY---- 172 (399)
T ss_pred HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH----
Confidence 55432 256788999999999999989988899999999999999999999999999999999999887
Q ss_pred cccCcccccchhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPE 215 (249)
Q Consensus 181 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
+..+|++.+++..+..++..+.....|+
T Consensus 173 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 200 (399)
T PRK05122 173 -------HWGGLAGLGLLIMLLALLGLLLARPRPA 200 (399)
T ss_pred -------HcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4468999888777666554444333343
No 48
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.86 E-value=4.7e-21 Score=160.67 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=138.4
Q ss_pred HHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy6455 44 ITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALR 123 (249)
Q Consensus 44 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 123 (249)
....++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.++++++++.++++|
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r 104 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSA 104 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHH
Confidence 36677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHH
Q psy6455 124 FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPS 203 (249)
Q Consensus 124 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 203 (249)
+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.+.. .+||+.+.+.++..
T Consensus 105 ~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~----------~~w~~~~~~~~~~~ 173 (393)
T PRK09705 105 LLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS----------ETWYQTLAWWALPA 173 (393)
T ss_pred HHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Confidence 99999999989988999999997 78999999999999999999999998876321 48999887766655
Q ss_pred HHHHHH
Q psy6455 204 ILLALW 209 (249)
Q Consensus 204 ~~~~~~ 209 (249)
++..+.
T Consensus 174 ~~~~~~ 179 (393)
T PRK09705 174 VVALFA 179 (393)
T ss_pred HHHHHH
Confidence 544443
No 49
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.86 E-value=3.4e-22 Score=165.96 Aligned_cols=170 Identities=16% Similarity=0.230 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy6455 37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY 116 (249)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 116 (249)
++.........+...|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.+++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL 83 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence 44555667778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccccCcccccchhHHH
Q psy6455 117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLP-AVAWLLIPLNLRIETPYFLYSSWNLF 195 (249)
Q Consensus 117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~l~~~l~~~~~~~~~~~~~~~~w~~~ 195 (249)
+.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++ .++..+. +..+||+.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~ 152 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA-----------ELYSWHWV 152 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH-----------hcCCchhH
Confidence 99999999999999999999999999999999999999999999999999999 4665554 34689999
Q ss_pred HHHHHHHHHHHHHH-hhcccCCh
Q psy6455 196 VTLVSVPSILLALW-LTRFPESP 217 (249)
Q Consensus 196 ~~~~~~~~~~~~~~-~~~~~~~~ 217 (249)
|++.+++.++..+. .++.+|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 153 FIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHHHHheeeCCCc
Confidence 99888777666554 44456554
No 50
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.86 E-value=6.3e-21 Score=158.40 Aligned_cols=163 Identities=10% Similarity=0.005 Sum_probs=143.6
Q ss_pred HHHHHHhhccccccccCCCCcc-hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6455 43 SITVLSFVLPSAQCDFGMTSSD-KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA 121 (249)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 121 (249)
.....+...|.+.+++|++..+ .|.+.+.+..+++++.++.|+++||+|.|+++.++.+...+..++.++++++..+.+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH---HH
Q psy6455 122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV---TL 198 (249)
Q Consensus 122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~---~~ 198 (249)
.|++.|++.|... ....++..++|+++|+++.++...+..+|.++++++++++. ..+||+.. ++
T Consensus 121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~------------s~gWr~y~~Ln~I 187 (511)
T TIGR00806 121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV------------TLGWISYSTLNII 187 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCchhHHHHHHH
Confidence 9999999999999 89999999999999999999999999999999999999853 24677643 44
Q ss_pred HHHHHHHHHHHhhcccCChh
Q psy6455 199 VSVPSILLALWLTRFPESPK 218 (249)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~ 218 (249)
......++.++.+++|..++
T Consensus 188 sl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 188 SLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHhCCCCch
Confidence 45555555666777775443
No 51
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.86 E-value=4.1e-20 Score=155.53 Aligned_cols=190 Identities=14% Similarity=0.002 Sum_probs=151.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455 23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL 101 (249)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (249)
++-.++.+....+..+........+++..+.+.+ ++|+|.++.+++.+++.+++.++.++.|++.||+|.|+++.++.+
T Consensus 29 ~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l 108 (462)
T PRK15034 29 KHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA 108 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 3334556677777777777788888888888766 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 102 VDGLCGIASSVA-----QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 102 ~~~i~~~~~~~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
+..+..+.++++ ++++.+++.|++.|++ +..++.....+++++|+++||+++++.....++|..+++++...+.
T Consensus 109 l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 109 ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999988876 7999999999999998 7788999999999999999999999997667777776666655433
Q ss_pred c-----cccc-cc-CcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 177 P-----LNLR-IE-TPYFLYSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 177 ~-----~~~~-~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
. ..+. .. ...++..+|+.+.++..++.++..++.+++
T Consensus 188 ~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 188 FVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1100 00 001134568888888888777776665444
No 52
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.86 E-value=1.4e-20 Score=158.46 Aligned_cols=181 Identities=18% Similarity=0.096 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455 30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA 109 (249)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 109 (249)
+..++...+..++.....++.+|.+++++|++..+.+++.+.+.+++.+++++.|++.||+|||++++++.++.+++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 44555667777888888889999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHh---hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---
Q psy6455 110 SSV---AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE--- 183 (249)
Q Consensus 110 ~~~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~--- 183 (249)
+.. .++++.+++.|++.|++.|..++..++++.+..|+++|++..++.+....+|..++|.+++.+........
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 543 35789999999999999999999999999999999999999999999999999999999988853210000
Q ss_pred ------------CcccccchhHHHHHHHHHHHHHHHHHh
Q psy6455 184 ------------TPYFLYSSWNLFVTLVSVPSILLALWL 210 (249)
Q Consensus 184 ------------~~~~~~~~w~~~~~~~~~~~~~~~~~~ 210 (249)
....+..+||++|.+.+++.++..++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000123479999998888777665554
No 53
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.86 E-value=5.4e-21 Score=162.50 Aligned_cols=182 Identities=14% Similarity=0.242 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q psy6455 26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL 105 (249)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 105 (249)
++..+....+.+..............|.+.+ .|+++++.+++.+.+.++..+++++.|+++||+|||++++.+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 4555555555555555555556667777765 599999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhh----hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455 106 CGIASSVA----QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR 181 (249)
Q Consensus 106 ~~~~~~~~----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 181 (249)
+.+.+.+. ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++++....+|..+++.+.+....
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~---- 179 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA---- 179 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH----
Confidence 88776654 4677788899999999998888888999999999999999999999999999999887765442
Q ss_pred ccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455 182 IETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
+..+||..|++.+++.++..+. .+++||+|+
T Consensus 180 ------~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~ 211 (438)
T TIGR00712 180 ------WFNDWHAALYFPAICAIIVALFAFAMMRDTPQ 211 (438)
T ss_pred ------HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 2258999999988887776544 455677654
No 54
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.85 E-value=1.1e-20 Score=157.35 Aligned_cols=164 Identities=24% Similarity=0.436 Sum_probs=146.8
Q ss_pred HHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6455 43 SITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLAL 122 (249)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 122 (249)
....+.+.+|.+.+++|+++.+.+++.+.+.++..++.+++|+++||+|||+++..+.++.+++.+.+.+.++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34556688888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHH
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVP 202 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~ 202 (249)
|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+. +..+|++.|++.+++
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL-----------VWFSWHAIFWVLALA 154 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcChHHHHHHHHHH
Confidence 999999999888889999999999999999999999999999999999999887 445899999988887
Q ss_pred HHHHHHH-hhcccCCh
Q psy6455 203 SILLALW-LTRFPESP 217 (249)
Q Consensus 203 ~~~~~~~-~~~~~~~~ 217 (249)
.++..++ .++.||++
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 155 AILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHhCCccC
Confidence 7776555 44566653
No 55
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.85 E-value=2.1e-20 Score=154.97 Aligned_cols=184 Identities=21% Similarity=0.195 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy6455 32 FGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS 110 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 110 (249)
..++..+..........+..|. +.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+.++++.++..++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3445555556667778888995 889999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh-HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455 111 SVAQ-YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY 189 (249)
Q Consensus 111 ~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~ 189 (249)
.+++ +++.+++.|++.|++.+ ..+...+++.|++|+++|+++.++......+|..+++.+++.+........ +..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~-~~~~~ 162 (366)
T TIGR00886 85 GLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGA-GLPAH 162 (366)
T ss_pred HHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-ccccc
Confidence 9999 99999999999999855 456678899999999999999999987777888877777766643110000 00023
Q ss_pred chhHHHH-HHHHHHHHHHHHH-hhcccCCh
Q psy6455 190 SSWNLFV-TLVSVPSILLALW-LTRFPESP 217 (249)
Q Consensus 190 ~~w~~~~-~~~~~~~~~~~~~-~~~~~~~~ 217 (249)
.+||+.+ ...+++..+..++ ....+|+|
T Consensus 163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLLPALLIFFVGADTP 192 (366)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799988 4434444443333 34445544
No 56
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.85 E-value=3.7e-20 Score=155.23 Aligned_cols=168 Identities=15% Similarity=0.074 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH
Q psy6455 36 LYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY 115 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~ 115 (249)
..+...+.........+.+.+++|.+..+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++.+.+.+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~ 90 (393)
T PRK11195 11 AQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH 90 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 33444443333444444556889989899999999999999999999999999999999999999999988887776665
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455 116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF 195 (249)
Q Consensus 116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~ 195 (249)
. ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|.++||.+++++.+ ..|+..
T Consensus 91 ~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~------------~~~~~~ 155 (393)
T PRK11195 91 P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD------------PHAEAA 155 (393)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
Confidence 4 6789999999999999999999999999999999999999999999999999999962 247777
Q ss_pred HHHHHHHHHHHHHHhhcccCChh
Q psy6455 196 VTLVSVPSILLALWLTRFPESPK 218 (249)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
+.+.+...++..+..+.+||+++
T Consensus 156 ~~i~~~~~~~~~~~~~~l~~~~~ 178 (393)
T PRK11195 156 LAVCALIYLLAALFNLFIPRLGA 178 (393)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcc
Confidence 76666555555555556777643
No 57
>KOG0253|consensus
Probab=99.85 E-value=3.9e-20 Score=147.13 Aligned_cols=218 Identities=27% Similarity=0.496 Sum_probs=195.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch
Q psy6455 13 FENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR 92 (249)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr 92 (249)
.++......+.+++|.........++...+-....+.+.|...+..|.+.-+..++......++.+++..+|..+|++||
T Consensus 63 v~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~gr 142 (528)
T KOG0253|consen 63 VDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGR 142 (528)
T ss_pred ehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhc
Confidence 34556667788999999999999998888877777888888888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 93 KITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA 172 (249)
Q Consensus 93 r~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 172 (249)
|+.+..+.....+...+...++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....++
T Consensus 143 r~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~la 220 (528)
T KOG0253|consen 143 RKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLA 220 (528)
T ss_pred chhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 888889999999999998877777 88999999999998
Q ss_pred HHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChHHHHHHHHHHHhhcCCC
Q psy6455 173 WLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGK 243 (249)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (249)
.... ...||||.......+..+.++..+++||+|++...++++.++.+.++++.+.|+..
T Consensus 221 w~vm-----------~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~q 280 (528)
T KOG0253|consen 221 WGVM-----------SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQ 280 (528)
T ss_pred HHHH-----------HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCC
Confidence 8877 44599999988888888888889999999999999999999999999998887754
No 58
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.85 E-value=3.8e-24 Score=182.42 Aligned_cols=194 Identities=24% Similarity=0.399 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHhhccccc--cccCCCC---------cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455 36 LYAYAAISITVLSFVLPSAQ--CDFGMTS---------SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG 104 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~---------~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (249)
+.+..+++...++...+... .+++.+. .+.++..+...+|..+|+++.|+++||+|||+.++++.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~ 87 (451)
T PF00083_consen 8 GGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMI 87 (451)
T ss_pred HHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 33556666666655544433 2222222 246789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh---HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455 105 LCGIASSVAQ---YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR 181 (249)
Q Consensus 105 i~~~~~~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 181 (249)
++.++..+++ +++.+.++|++.|++.|+..+....++.|..|+++|++..++.+..+.+|..++..++..+.+..
T Consensus 88 i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-- 165 (451)
T PF00083_consen 88 IGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS-- 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 9999999999 99999999999999999999999999999999999999999999999999998888765553222
Q ss_pred ccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChHHHHHHHHHHH
Q psy6455 182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMF 237 (249)
Q Consensus 182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (249)
+...||..+.+.+++.++..+..+++||+|+|...+++.+++++.+++..
T Consensus 166 ------~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~ 215 (451)
T PF00083_consen 166 ------DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLR 215 (451)
T ss_pred ------ccccccccccccccccccccccccccccccceeccccccccccccccccc
Confidence 23569999999999998888888889999999988888888777776643
No 59
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.85 E-value=7.6e-20 Score=153.89 Aligned_cols=173 Identities=22% Similarity=0.181 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCCcc-----hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSD-----KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 106 (249)
...+..++.........+++|.+.+++|.+..+ .+++.+.+.++..++.++.|+++||+|||++++.+.++.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 97 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV 97 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence 334455556667777888899998999988665 388899999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455 107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186 (249)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 186 (249)
.+++.+.++++.+++.|++.|++.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---------- 166 (408)
T PRK09874 98 MVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA---------- 166 (408)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 8888888999999999999999754 46777788899999999999999999999999999999999886
Q ss_pred cccchhHHHHHHHHHHHHHHHHHh-hcccCC
Q psy6455 187 FLYSSWNLFVTLVSVPSILLALWL-TRFPES 216 (249)
Q Consensus 187 ~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~ 216 (249)
+..+||+.|++.+++.++..+.. ++.+|+
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 167 -DSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred -HHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44589999999888777666553 335554
No 60
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.84 E-value=1.5e-20 Score=165.63 Aligned_cols=186 Identities=14% Similarity=0.173 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy6455 31 IFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS 110 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 110 (249)
+...+..+.........+..++.++++++++..+.|++.+.+.++++++.++.+++.||+|||+.+.++.++.+++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 34444566666677888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhh---------------------------------------------------HHHHHHHHHHHHHhhhccccccccc
Q psy6455 111 SVAQ---------------------------------------------------YYGVFLALRFINGFAVTGTLGICFP 139 (249)
Q Consensus 111 ~~~~---------------------------------------------------~~~~l~~~~~l~G~~~g~~~~~~~~ 139 (249)
++.+ .+..++++|+++|+|.+..++...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 7653 2456789999999999999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----------cCcccccchhHHHHHHHHHHHHHHHH
Q psy6455 140 YLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI-----------ETPYFLYSSWNLFVTLVSVPSILLAL 208 (249)
Q Consensus 140 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~-----------~~~~~~~~~w~~~~~~~~~~~~~~~~ 208 (249)
++.|++|+++|+..+++++....+|.++|+++++++.+..... +.+......|+..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987543100 00101112488889998888888777
Q ss_pred HhhcccCC
Q psy6455 209 WLTRFPES 216 (249)
Q Consensus 209 ~~~~~~~~ 216 (249)
.++++|++
T Consensus 276 ~l~~~p~~ 283 (633)
T TIGR00805 276 PFFFFPKA 283 (633)
T ss_pred HHHhCccc
Confidence 66666654
No 61
>PRK10054 putative transporter; Provisional
Probab=99.84 E-value=7.3e-20 Score=153.55 Aligned_cols=170 Identities=15% Similarity=0.074 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q psy6455 35 LLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA 113 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 113 (249)
...++.........+++|. +.+++|++..+.+++.+.+.++..+++++.|+++||+|||++++++.++..++.+...+.
T Consensus 14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~ 93 (395)
T PRK10054 14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence 3444445555666665554 556799999999999999999999999999999999999999999999999998888899
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455 114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN 193 (249)
Q Consensus 114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~ 193 (249)
++++.+++.+++.|.+.+...+...++..|..|+++|+++.++.+...++|..++|.+++++. + .+|+
T Consensus 94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~-----------~-~g~~ 161 (395)
T PRK10054 94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV-----------M-QSIN 161 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-hccC
Confidence 999988888988888777777888899999999999999999999999999999999999885 2 4799
Q ss_pred HHHHHHHHHHHHHHHHh-hcccCC
Q psy6455 194 LFVTLVSVPSILLALWL-TRFPES 216 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-~~~~~~ 216 (249)
..|.+.++..++..+.. +++||+
T Consensus 162 ~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 162 LPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998887777765543 335544
No 62
>PTZ00207 hypothetical protein; Provisional
Probab=99.83 E-value=1.6e-19 Score=155.94 Aligned_cols=173 Identities=8% Similarity=0.050 Sum_probs=137.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD 103 (249)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (249)
.++|..+....+...+.+ ..+.++.+.+.+.+++|+|..+.+++.+.. .....++++.|+++||+|+|++++++.++.
T Consensus 24 ~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~ 101 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF 101 (591)
T ss_pred cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 344555554444444433 345667778889999999999999988774 345567888999999999999999999999
Q ss_pred HHHHHHHHhh------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q psy6455 104 GLCGIASSVA------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIV-LPAVAWLLI 176 (249)
Q Consensus 104 ~i~~~~~~~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~l~~~l~ 176 (249)
.++.++++++ ++++.+.+.|++.|++.+...+.....+.+++| ++||++.++.....++|+++ +++...++.
T Consensus 102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 589999999999999998888888889999997 78999999999999999976 555555542
Q ss_pred cccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 177 PLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 177 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
.+|+..|++.+++.++..++...
T Consensus 181 -------------~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 181 -------------DNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred -------------HhHHHHHHHHHHHHHHHHHHHHh
Confidence 36788888888777777665333
No 63
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.83 E-value=1.8e-19 Score=150.59 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455 30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA 109 (249)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 109 (249)
+.......+.........++.+|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666667788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 110 SSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 110 ~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
+.++++++.+++.|++.|++.+...+.....+.+..++++|+++++.++....+|..++|.+++.+.
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999998888887777888899999999999999999999999999999885
No 64
>KOG2532|consensus
Probab=99.83 E-value=4.8e-19 Score=149.82 Aligned_cols=154 Identities=19% Similarity=0.301 Sum_probs=139.5
Q ss_pred cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHhhhccc
Q psy6455 56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY--YGVFLALRFINGFAVTGT 133 (249)
Q Consensus 56 ~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~~~l~G~~~g~~ 133 (249)
.++++++.+.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.+++.++..++.+ ++.+++.|+++|++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 358889999999999999999999999999999999999999999999999999888754 457799999999999999
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc-
Q psy6455 134 LGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR- 212 (249)
Q Consensus 134 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~- 212 (249)
+|....+.++|.|+++|++..++...+..+|.+++-.+++++.+.. .||+++|++.+++.++..+++++
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~----------~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS----------LGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC----------CCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998432 79999999999999988887555
Q ss_pred ccCChhH
Q psy6455 213 FPESPKF 219 (249)
Q Consensus 213 ~~~~~~~ 219 (249)
..|+|..
T Consensus 216 ~~d~P~~ 222 (466)
T KOG2532|consen 216 YSDSPSK 222 (466)
T ss_pred hcCCccc
Confidence 4666653
No 65
>KOG0252|consensus
Probab=99.83 E-value=1.5e-20 Score=153.27 Aligned_cols=199 Identities=21% Similarity=0.313 Sum_probs=159.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cC-------CCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh
Q psy6455 22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCD-FG-------MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK 93 (249)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr 93 (249)
.++++...+.++..+.+.++++...++...|.+... +| +++...+.+..+..+|..+|+++.|++.||+|||
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 357778888999999999999999999888776443 22 4455678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHH
Q psy6455 94 ITLIGALLVDGLCGIASSVAQ-------YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGII 166 (249)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 166 (249)
+++...+++.+++++++++.. -.+++...|++.|+|.|+.+|...+..+|....+.||...+..-....+|..
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 999999999999998777642 2578899999999999999999999999999999999999976655566666
Q ss_pred HHHHHHHHHhcccc----cccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHH
Q psy6455 167 VLPAVAWLLIPLNL----RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFL 220 (249)
Q Consensus 167 ~~~~l~~~l~~~~~----~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (249)
.|.+++..+..... ...+...-..-||..+.+.++++++.....+.+||++++.
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT 252 (538)
T ss_pred hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence 65555544432221 1111112335699999999999999888888899999876
No 66
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.83 E-value=6.7e-20 Score=156.44 Aligned_cols=177 Identities=12% Similarity=0.079 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455 25 FHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG 104 (249)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (249)
++|.++..+.+...........++.++|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 95 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS 95 (455)
T ss_pred cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence 34555555444444333333456777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHH-HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455 105 LCGIASSVAQYYGVFLA-LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE 183 (249)
Q Consensus 105 i~~~~~~~~~~~~~l~~-~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 183 (249)
++.++++++++++.+++ .|++.|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+.
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~------- 167 (455)
T TIGR00892 96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF------- 167 (455)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH-------
Confidence 99999989999888765 5689999988766667778889986 78999999999999999999999999887
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 184 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
+..+||+.|++.+++.++..+..+++
T Consensus 168 ----~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 168 ----ESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred ----HHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 44689999999988877665554443
No 67
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.83 E-value=1.3e-19 Score=148.69 Aligned_cols=168 Identities=25% Similarity=0.328 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh
Q psy6455 33 GGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV 112 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 112 (249)
..+..+..........+..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.++.+.++..++.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 33455566777778888888898999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchh
Q psy6455 113 AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSW 192 (249)
Q Consensus 113 ~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w 192 (249)
.++++.+++.|++.|++.+...+...+++.|++|+++|++..++.+....+|..++|.+++.+. +..+|
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~ 152 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA-----------ESLGW 152 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 34579
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy6455 193 NLFVTLVSVPSILLALWLT 211 (249)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~ 211 (249)
++.+++.++..++..+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 153 RWLFLILAILGLLLALLLL 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888877766655543
No 68
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.8e-19 Score=142.74 Aligned_cols=184 Identities=19% Similarity=0.191 Sum_probs=156.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q psy6455 23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV 102 (249)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (249)
++.+.+.+....+........++.++++.+.+.+++|+|+.|.+++..+..+...+..++.|.+.||+|.|+...++.++
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l 88 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL 88 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence 34445566666667777777788888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh---HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 103 DGLCGIASSVAQ---YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 103 ~~i~~~~~~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
..+-.+..+++. +++.+++.+++.|++ |+.+++..+++++++|+|++|.+++++. ..++|..+..+++..+...
T Consensus 89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~- 165 (417)
T COG2223 89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA- 165 (417)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH-
Confidence 999999888875 455999999999997 7789999999999999999999999998 7788888888888887633
Q ss_pred ccccCcccccch---hHHHHHHHHHHHHHHHHHhh-cccCChhH
Q psy6455 180 LRIETPYFLYSS---WNLFVTLVSVPSILLALWLT-RFPESPKF 219 (249)
Q Consensus 180 ~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 219 (249)
.+ |+.+..+..+..++..+..+ ...|.|++
T Consensus 166 ----------~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~ 199 (417)
T COG2223 166 ----------FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH 199 (417)
T ss_pred ----------HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 35 99998888888888766644 45666654
No 69
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.82 E-value=2e-19 Score=149.62 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHH-HHHHHHHHHHHHHhh
Q psy6455 36 LYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG-ALLVDGLCGIASSVA 113 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~ 113 (249)
.++...+......+.+|. +.+++|.|..+.+++.+.+.++..+.+++.|+++||+||||.++. +.++..++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 345555666667777776 467899999999999999999999999999999999999887654 566666777788888
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHH--HHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455 114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKV--LCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS 191 (249)
Q Consensus 114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~ 191 (249)
++++.+++.|++.|.+.+...+...++..|+.|+++|+.. .+.......+|.+++|.+++.+. +..+
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~-----------~~~~ 153 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA-----------LGFG 153 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH-----------Hhcc
Confidence 9999999999998887777778788888898887777654 57777888999999999999987 4468
Q ss_pred hHHHHHHHHHHHHHHHHHh-hcccCChh
Q psy6455 192 WNLFVTLVSVPSILLALWL-TRFPESPK 218 (249)
Q Consensus 192 w~~~~~~~~~~~~~~~~~~-~~~~~~~~ 218 (249)
||+.|++.+++.++..+.. +++||.|+
T Consensus 154 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 154 FTVMFLTAALAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 9999999988877766654 44677654
No 70
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.82 E-value=2.1e-19 Score=154.17 Aligned_cols=174 Identities=10% Similarity=-0.062 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHH
Q psy6455 28 ILVIFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGL 105 (249)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i 105 (249)
+.+..+++..+...+.++.+...++. +.+++|.+..+.+++.+.+.....+..+++|+++|| +||||+++++.++.++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~ 93 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI 93 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence 33444445555566666666655544 567799999999999999998888999999999999 9999999999999999
Q ss_pred HHHHHHhhhHHHH-HHHHHHHHHhhhcccccccccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455 106 CGIASSVAQYYGV-FLALRFINGFAVTGTLGICFPYLGEFQPTA--YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI 182 (249)
Q Consensus 106 ~~~~~~~~~~~~~-l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 182 (249)
+.+.+.++.+... +.++|+++|++.|...+...+++.|.+|++ +|..+.++++.+.++|..++|.+++++.
T Consensus 94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~------ 167 (489)
T PRK10207 94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA------ 167 (489)
T ss_pred HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH------
Confidence 9999988765443 558899999999999999999999999887 4577899999999999999999999997
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 183 ETPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
+..|||+.|++.++..++..+.+..
T Consensus 168 -----~~~gw~~~F~i~~i~~~~~~~~~~~ 192 (489)
T PRK10207 168 -----DKFGYSVTYNLCGAGLIIALLVYFA 192 (489)
T ss_pred -----HhhChHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999876544444433333
No 71
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.82 E-value=5.4e-19 Score=148.52 Aligned_cols=161 Identities=14% Similarity=0.063 Sum_probs=139.5
Q ss_pred HHHHHHhhcc-ccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6455 43 SITVLSFVLP-SAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA 121 (249)
Q Consensus 43 ~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 121 (249)
......++++ ++.+++|.|..+.|++.+...+...+.+++.|+++||+|||++++.+.++.+++.+.+.+.++++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (400)
T PRK11646 25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWL 104 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3344444444 456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455 122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV 201 (249)
Q Consensus 122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~ 201 (249)
.|++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+||.+++++. ..+|++.|++.++
T Consensus 105 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~------------~~g~~~~f~~~~~ 172 (400)
T PRK11646 105 SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL------------QYDFRLVCATGAV 172 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhHHHHHHHHHH
Confidence 9999999988888888899999999999999999999999999999999999985 2589999998887
Q ss_pred HHHHHHHH-hhcccC
Q psy6455 202 PSILLALW-LTRFPE 215 (249)
Q Consensus 202 ~~~~~~~~-~~~~~~ 215 (249)
..++..++ .++.||
T Consensus 173 ~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 173 LFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHhCCc
Confidence 77666544 334454
No 72
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.82 E-value=4.9e-19 Score=152.57 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=137.4
Q ss_pred HHHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH-H--HhhhH
Q psy6455 40 AAISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA-S--SVAQY 115 (249)
Q Consensus 40 ~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~--~~~~~ 115 (249)
.....+....++|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||++++++.++..++... . ..+++
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV 341 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344555556667655 567888888888888889999999999999999999999988877654433322 1 22345
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455 116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF 195 (249)
Q Consensus 116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~ 195 (249)
...+++++++.|++.+...+....++.|.+|++.|++++++.+....+++.++|.+.+++.+.. .+|+.+
T Consensus 342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~----------~~~~~~ 411 (490)
T PRK10642 342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST----------QNLMMP 411 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCchHH
Confidence 6677788888888777767777788899999999999999744334556678888888886322 356777
Q ss_pred HHHHHHHHHHHHHHhhcccCChhHHHhh-----CChHHHHHHHHHHH
Q psy6455 196 VTLVSVPSILLALWLTRFPESPKFLFEC-----GEYDQALDILRQMF 237 (249)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 237 (249)
+++..+++++..+..+++||+|++..++ ++.+|+++.+++++
T Consensus 412 ~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 412 AYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 7777777777777777789998876543 56667776666553
No 73
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.82 E-value=3.1e-19 Score=152.88 Aligned_cols=171 Identities=12% Similarity=-0.023 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc-cc--cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHH
Q psy6455 31 IFGGLLYAYAAISITVLSFVLPSAQ-CD--FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLC 106 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~ 106 (249)
..+.+..++..+..+.+.+.+|.+. ++ +|++..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g 92 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444555566666666777777664 44 89999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccch---hHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455 107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAY---REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE 183 (249)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 183 (249)
.++.+++++.+.+.+++++.|++.|...+...++++|++|+++ |+++.++++...++|..+||.+++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~------- 165 (475)
T TIGR00924 93 HFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA------- 165 (475)
T ss_pred HHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH-------
Confidence 9999888888888899999999999989999999999998754 888999999999999999999999997
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 184 TPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 184 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
+..+|++.|.+.++..++..+....
T Consensus 166 ----~~~g~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 166 ----ENYGYHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred ----HhcChHHHHHHHHHHHHHHHHHHHH
Confidence 4458999999888666555444433
No 74
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.82 E-value=1.4e-19 Score=152.99 Aligned_cols=168 Identities=18% Similarity=0.107 Sum_probs=141.6
Q ss_pred HHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh-----h
Q psy6455 39 YAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV-----A 113 (249)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~ 113 (249)
...+......+.+|.+.++++.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+.... .
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (417)
T PRK10489 28 ISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE 107 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC
Confidence 34445556677788888888889999999999999999999999999999999999999888777766554432 4
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455 114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN 193 (249)
Q Consensus 114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~ 193 (249)
++++.+++.|++.|++.+...+...+++.|+.|+++|+++.++.+....+|..+||.+++.+. +..+|+
T Consensus 108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~-----------~~~~~~ 176 (417)
T PRK10489 108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI-----------AAGGVA 176 (417)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH-----------HHHhhH
Confidence 578888899999999988888888899999999999999999999999999999999999987 335899
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCh
Q psy6455 194 LFVTLVSVPSILLALWLTRFPESP 217 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
+.+++.++..++..++.+.+|+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~ 200 (417)
T PRK10489 177 WNYGLAAAGTFITLLPLLRLPALP 200 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999888887777776666677654
No 75
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.81 E-value=5.5e-19 Score=151.93 Aligned_cols=160 Identities=21% Similarity=0.236 Sum_probs=131.3
Q ss_pred HHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy6455 41 AISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120 (249)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~ 120 (249)
.+........++.+..++|- .....|+.+...++..+..++.|+++|.||||.+++.+.++..++.++++-++|...++
T Consensus 57 ~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~i 135 (599)
T PF06609_consen 57 YFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFI 135 (599)
T ss_pred HHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHH
Confidence 34444445667788889985 57888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHH
Q psy6455 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVS 200 (249)
Q Consensus 121 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~ 200 (249)
++..+.|+|.|.... ....++|+.|.+.|..+..+...........++.++..+. .+.+|||.|++.+
T Consensus 136 ag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~-----------~~~~WRw~~~~~~ 203 (599)
T PF06609_consen 136 AGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA-----------AHSGWRWIFYIFI 203 (599)
T ss_pred HHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc-----------cCCCcchHHHHHH
Confidence 999999999777654 4556899999999988887766655555556777776654 3469999999998
Q ss_pred HHHHHHHHHhhcc
Q psy6455 201 VPSILLALWLTRF 213 (249)
Q Consensus 201 ~~~~~~~~~~~~~ 213 (249)
+...+.++..+++
T Consensus 204 i~~~i~~vl~~~f 216 (599)
T PF06609_consen 204 IWSGIALVLIFFF 216 (599)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776664443
No 76
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.81 E-value=1.2e-18 Score=146.50 Aligned_cols=130 Identities=13% Similarity=0.067 Sum_probs=112.1
Q ss_pred HHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH---h-hhHHHHHHHH
Q psy6455 47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---V-AQYYGVFLAL 122 (249)
Q Consensus 47 ~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~l~~~ 122 (249)
...+++.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++. . .++++.+++.
T Consensus 32 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (402)
T TIGR00897 32 EQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF 111 (402)
T ss_pred HHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence 33445556688999999999999999999999999999999999999999999999888866542 3 2578888899
Q ss_pred HHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGI-IVLPAVAWLLI 176 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~l~~~l~ 176 (249)
|++.|++.+...+....++.+.+|+++|++++|+.+....+|. .++|.+++.+.
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998887777777888899999999999999999999996 57899888876
No 77
>KOG2615|consensus
Probab=99.80 E-value=2.5e-19 Score=143.07 Aligned_cols=119 Identities=22% Similarity=0.370 Sum_probs=109.6
Q ss_pred cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccc
Q psy6455 58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGIC 137 (249)
Q Consensus 58 ~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~ 137 (249)
.+.+....|.+.+.+++...+.++.+|.++||+|||.++++|++..++...+.+.++|+..++++|++.|+.-| ...+.
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~ 141 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVI 141 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHH
Confidence 44456678999999999999999999999999999999999999999999999999999777788999999865 56778
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 138 FPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 138 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
-++++|.+++++|+.+++..+..+++|.++||++++++..
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 8999999999999999999999999999999999999975
No 78
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.80 E-value=1.9e-18 Score=144.25 Aligned_cols=177 Identities=21% Similarity=0.277 Sum_probs=133.3
Q ss_pred HHHHHHHHHhhccccccccC--CCCcchhhHHHH-----hHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh
Q psy6455 40 AAISITVLSFVLPSAQCDFG--MTSSDKGWLNAA-----PMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV 112 (249)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~-----~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 112 (249)
+.++...+++..+.+.+++. .++.+.+.+.+. ..++..+++++.|+++||+|||++++.+.++..++.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 84 (394)
T TIGR00883 5 EWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 34455555655555555533 444555554433 33344578999999999999999999999999999999988
Q ss_pred hhHHH--------HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy6455 113 AQYYG--------VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIET 184 (249)
Q Consensus 113 ~~~~~--------~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 184 (249)
+++++ .+++.|+++|++.+...+....++.|++|+++|++..++.+.+..+|..+++.++..+......
T Consensus 85 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~--- 161 (394)
T TIGR00883 85 LPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD--- 161 (394)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH---
Confidence 87754 4788999999999999999999999999999999999999999999999999887766421100
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcccCChhH
Q psy6455 185 PYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKF 219 (249)
Q Consensus 185 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (249)
...+..+||+.|++.+++.++..+.....+|+++.
T Consensus 162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (394)
T TIGR00883 162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVF 196 (394)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhH
Confidence 00023689999998887777666655566776543
No 79
>KOG2533|consensus
Probab=99.79 E-value=5.1e-18 Score=144.09 Aligned_cols=164 Identities=20% Similarity=0.254 Sum_probs=143.5
Q ss_pred hccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy6455 50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129 (249)
Q Consensus 50 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~ 129 (249)
.+..+.+|.+....+.+.+.++++++++++.++++.|.||++..+.+....++..+..++.....|++.+++.|++.|+.
T Consensus 68 ~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~ 147 (495)
T KOG2533|consen 68 SLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLF 147 (495)
T ss_pred HHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33346688899999999999999999999999999999999988888888888887777777789999999999999999
Q ss_pred hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455 130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209 (249)
Q Consensus 130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 209 (249)
++...|....++..++.+++|+..++++.....+|+++|.+++..+.... +.+...||||.|++.+++.++..++
T Consensus 148 es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~-----~~~~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 148 ESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN-----GSGGLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred hcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc-----CCCCcCCceeehhHHHHHHHHHHhe
Confidence 99999999999999999999999999999999999999999998865322 1113469999999999999888877
Q ss_pred -hhcccCChh
Q psy6455 210 -LTRFPESPK 218 (249)
Q Consensus 210 -~~~~~~~~~ 218 (249)
.+++|+.|.
T Consensus 223 ~f~~lp~~P~ 232 (495)
T KOG2533|consen 223 VFFFLPDNPS 232 (495)
T ss_pred EEEEecCChh
Confidence 455788876
No 80
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.77 E-value=1.9e-17 Score=142.51 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-----chhHH-HHHHHHHHH
Q psy6455 31 IFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-----GRKIT-LIGALLVDG 104 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~ 104 (249)
.......+..+......+..+|.+.++.|.|.++++.. +.....+ ++.+++|+++||+ |||+. ++.+.+..+
T Consensus 15 ~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~ 92 (491)
T PRK11010 15 AILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL 92 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence 34445556667777888888999989999998898886 3333333 6899999999999 99986 557777777
Q ss_pred HHHHHHHhh---hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455 105 LCGIASSVA---QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR 181 (249)
Q Consensus 105 i~~~~~~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 181 (249)
++...+++. ++++.+.+.+++.|++.+...+...++..|++|+++|+++.++...+..+|.++++.++.++.+.
T Consensus 93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--- 169 (491)
T PRK11010 93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--- 169 (491)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 776666664 46888888999999998888888999999999999999999999999999999999999888731
Q ss_pred ccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChh
Q psy6455 182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPK 218 (249)
Q Consensus 182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
..|||..|++.+++.++..+..++.||+++
T Consensus 170 -------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~ 199 (491)
T PRK11010 170 -------YLGWQGMYWLMAALLIPCIIATLLAPEPTD 199 (491)
T ss_pred -------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 259999999999888777666666777643
No 81
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.76 E-value=3.9e-18 Score=141.13 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=130.0
Q ss_pred HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy6455 45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRF 124 (249)
Q Consensus 45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 124 (249)
...++.+|.+.+++|++.++.+++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ ..++.+.+++.|+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999998888877776 6788888999999
Q ss_pred HHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHH
Q psy6455 125 INGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSI 204 (249)
Q Consensus 125 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 204 (249)
+.|++.+...+.....+.|+++ ++|+++.++++....+|..+++.+.+.+.+.. ..+||+.|.+.+++.+
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~---------~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS---------GGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHH
Confidence 9999998888888888889886 68999999999999999999999988876321 1249998887766554
Q ss_pred HH
Q psy6455 205 LL 206 (249)
Q Consensus 205 ~~ 206 (249)
+.
T Consensus 166 ~~ 167 (355)
T TIGR00896 166 LA 167 (355)
T ss_pred HH
Confidence 44
No 82
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.75 E-value=5e-17 Score=136.76 Aligned_cols=173 Identities=15% Similarity=0.059 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-----chhH-HHHHHHHHHHHHH
Q psy6455 34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-----GRKI-TLIGALLVDGLCG 107 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~~~~i~~ 107 (249)
...++.++.........+|.+.++.|+|.+++|++...... .+..+++|+++||+ |||| .++++.++.+++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 45567778888888899999999999999999999777765 69999999999999 8876 6778888887777
Q ss_pred HHHHhh---hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy6455 108 IASSVA---QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIET 184 (249)
Q Consensus 108 ~~~~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 184 (249)
..+.+. .+++.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+.+.
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~------ 156 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR------ 156 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc------
Confidence 776665 35777777777888887888888999999999999999999999999999999999998888632
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcccCChh
Q psy6455 185 PYFLYSSWNLFVTLVSVPSILLALWLTRFPESPK 218 (249)
Q Consensus 185 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
..+||..|++.++..++..+..++.||+++
T Consensus 157 ----~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~ 186 (402)
T PRK11902 157 ----VLGWGNTYLLMAGLMLAGALTTLWAPEPEV 186 (402)
T ss_pred ----ccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 148999999988887776666566676543
No 83
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.75 E-value=3.6e-17 Score=145.31 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=120.8
Q ss_pred hHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccc
Q psy6455 67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQP 146 (249)
Q Consensus 67 ~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~ 146 (249)
+...+..++..++.++.|+++||+|||++++++.++.+++.++..+.++...+++.+++.|++.++..+...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566678889999999999999999999999999999999988888877778888888888888888889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChh
Q psy6455 147 TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPK 218 (249)
Q Consensus 147 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
++.|++++|+.+....+|.+++|.+++.+.. .+...+|++.+++.++++++.+++||+..
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~------------~~~~~pf~i~a~~lll~~ll~~~LPET~~ 738 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVG------------ITKAAPILFASAALACGGLLALKLPDTRG 738 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999988752 23456788888888887777777888743
No 84
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.75 E-value=3.8e-17 Score=139.00 Aligned_cols=171 Identities=14% Similarity=0.032 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHHHHH
Q psy6455 29 LVIFGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLC 106 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~ 106 (249)
.+..+++..+...+..+.+..++|.+ .+++|.+..+.+.+.+.+.....++.+++|+++||+ |||++++++.++.+++
T Consensus 10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg 89 (493)
T PRK15462 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG 89 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 34444455555666666676667665 456899999999999999999999999999999999 9999999999999988
Q ss_pred HHHHHhhh-HHHHHHHHHHHHHhhhcccccccccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455 107 GIASSVAQ-YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA--YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE 183 (249)
Q Consensus 107 ~~~~~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 183 (249)
.+++...+ +...+.++..+.+++.|...+...+++.|.+|++ +|.++.++++...++|+.++|.+.+++.
T Consensus 90 ~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~------- 162 (493)
T PRK15462 90 HVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ------- 162 (493)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH-------
Confidence 77665433 2233444444555666666777788999999876 6999999999999999999999999997
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHh
Q psy6455 184 TPYFLYSSWNLFVTLVSVPSILLALWL 210 (249)
Q Consensus 184 ~~~~~~~~w~~~~~~~~~~~~~~~~~~ 210 (249)
+..||++.|.+.++..+++.+..
T Consensus 163 ----~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 163 ----EEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred ----hhhChHHHHHHHHHHHHHHHHHH
Confidence 44689999998776655555443
No 85
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.75 E-value=3.4e-17 Score=141.17 Aligned_cols=166 Identities=11% Similarity=-0.049 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHHHHH
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIA 109 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~ 109 (249)
.+++..++..+..+.+...++.+ .+++|++..+.+++.+.+........+++|+++|| +|||+.++++.++.+++..+
T Consensus 25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l 104 (500)
T PRK09584 25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL 104 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 34444455555555566655554 57799999999888888776666667899999999 59999999999999999888
Q ss_pred HHhhh-HHHHHHHHHHHHHhhhcccccccccccccccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455 110 SSVAQ-YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAY--REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186 (249)
Q Consensus 110 ~~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 186 (249)
+.+++ +.+.+.+++++.|++.|...+...+++.|++|+++ |..+.++++.+.++|..++|.+++++.
T Consensus 105 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~---------- 174 (500)
T PRK09584 105 VAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA---------- 174 (500)
T ss_pred HHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH----------
Confidence 88764 45667788999999999888888899999998653 456788889999999999999999997
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q psy6455 187 FLYSSWNLFVTLVSVPSILLAL 208 (249)
Q Consensus 187 ~~~~~w~~~~~~~~~~~~~~~~ 208 (249)
+..|||+.|.+.++..++..+
T Consensus 175 -~~~g~~~~F~i~~i~~~i~~i 195 (500)
T PRK09584 175 -AKYGWSVAFALSVVGMLITVV 195 (500)
T ss_pred -HhhCHHHHHHHHHHHHHHHHH
Confidence 446899999988765555443
No 86
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.73 E-value=5.1e-17 Score=135.80 Aligned_cols=162 Identities=9% Similarity=-0.046 Sum_probs=125.3
Q ss_pred HHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh----HHHHHHHHHHHHHHHHHHhhhH
Q psy6455 40 AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK----ITLIGALLVDGLCGIASSVAQY 115 (249)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~~~~~~~ 115 (249)
.........+++|.+.+++|.|..++|++.+.+.++..++++++|+++||+||| +.+.+..++. ........++
T Consensus 16 ~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (382)
T PRK11128 16 YFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHS 93 (382)
T ss_pred HHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhccc
Confidence 344567777888888899999999999999999999999999999999999984 3333222222 2223334578
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455 116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF 195 (249)
Q Consensus 116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~ 195 (249)
++.+++.|++.|++.+...+...++..++ .++|+++.+.......+|..++|.+++++. +..+||..
T Consensus 94 ~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~-----------~~~g~~~~ 160 (382)
T PRK11128 94 FWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLV-----------SWFGEQAI 160 (382)
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHH-----------HHcChhHH
Confidence 99999999999998888888877777766 356788888888888999999999999997 44699999
Q ss_pred HHHHHHHHHHHHHHhhcccCC
Q psy6455 196 VTLVSVPSILLALWLTRFPES 216 (249)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~ 216 (249)
|++.++..++..++.++.||.
T Consensus 161 f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 161 LWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred HHHHHHHHHHHHHHHHccCCC
Confidence 988876655555444444543
No 87
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.73 E-value=5.2e-17 Score=115.92 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=119.5
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccccccc
Q psy6455 68 LNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPT 147 (249)
Q Consensus 68 ~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~ 147 (249)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.+.....++.+.+.+.+++.|++.+...+....++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 44567788999999999999999999999999999999888888888999999999999999998899999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 148 AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 148 ~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
++|++..++.+....+|..++|.+.+.+. +..+|++.+.+.++..++..+...++
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLA-----------QFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHh-----------cccchHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999987 44589999998888777776664443
No 88
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.73 E-value=1.5e-16 Score=133.96 Aligned_cols=159 Identities=21% Similarity=0.135 Sum_probs=130.0
Q ss_pred HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy6455 45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRF 124 (249)
Q Consensus 45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 124 (249)
.......|.+.++.|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+...++.+...+.++.+.+.+..+
T Consensus 237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (406)
T PRK11551 237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF 316 (406)
T ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33444567777788999999999999999999999999999999999999988877777777666666677777777788
Q ss_pred HHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHH
Q psy6455 125 INGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSI 204 (249)
Q Consensus 125 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 204 (249)
+.|++.++..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.. .+|...+++.....+
T Consensus 317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~----------~~~~~~~~~~~~~~~ 386 (406)
T PRK11551 317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG----------RSTVGVIGASIPVIL 386 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC----------CchHHHHHHHHHHHH
Confidence 8888877778888899999999999999999999999999999999999987432 456666766666666
Q ss_pred HHHHHhhcc
Q psy6455 205 LLALWLTRF 213 (249)
Q Consensus 205 ~~~~~~~~~ 213 (249)
+..++.+++
T Consensus 387 ~~~~~~~~~ 395 (406)
T PRK11551 387 VAALAALLL 395 (406)
T ss_pred HHHHHHHHH
Confidence 655554444
No 89
>KOG3764|consensus
Probab=99.72 E-value=8.1e-18 Score=135.26 Aligned_cols=146 Identities=19% Similarity=0.218 Sum_probs=136.5
Q ss_pred ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccc
Q psy6455 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGI 136 (249)
Q Consensus 57 ~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~ 136 (249)
+.+-+.+++|++.....+.+.+.+++.|.+.||+|+|..+++|+++...+.+++++.++++.++++|.++|+|.+...+.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 137 CFPYLGEFQPTAY-REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 137 ~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
..+++++.+|++. |++++|+.-.+.++|..+||.+++.+. +..|.+.+|++.+++.++...+.+++
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY-----------e~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY-----------EFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH-----------hhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 9999999999876 799999999999999999999999998 55699999999999999998886665
No 90
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1e-16 Score=129.53 Aligned_cols=184 Identities=18% Similarity=0.116 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455 29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI 108 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 108 (249)
.+..+...++..++......+.+|++.+.++++..+++++...++.++.+.+++.|++.+|+|+|+-++.|+.+.+++++
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34455566677788888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH---hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--
Q psy6455 109 ASS---VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE-- 183 (249)
Q Consensus 109 ~~~---~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~-- 183 (249)
+.. ...++..++++.++.|.|.+..++..++++..+.+++.....+++.+..+.+|.+++|.+++.+...+....
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~ 173 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS 173 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence 874 456789999999999999999999999999999999888999999999999999999999999875320000
Q ss_pred ------CcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 184 ------TPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 184 ------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
....+...|+.+|...+...++..+....
T Consensus 174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 01112345888888888777777666544
No 91
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.72 E-value=8.6e-17 Score=135.90 Aligned_cols=149 Identities=11% Similarity=0.008 Sum_probs=121.1
Q ss_pred cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHhhhcccccccc
Q psy6455 63 SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ----YYGVFLALRFINGFAVTGTLGICF 138 (249)
Q Consensus 63 ~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~~~l~G~~~g~~~~~~~ 138 (249)
+..+.+.+...++..++.++.|+++||+|+|++++++.++..++........ +.+.+++.+++.|++.+...+...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999999999999999999999999998888766665532 245667789999999888888888
Q ss_pred cccccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCC
Q psy6455 139 PYLGEFQPTAYREKVLCWLE-MFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPES 216 (249)
Q Consensus 139 ~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~ 216 (249)
.+++|.+|++.|++++++.+ ....+|..+||.+++++.+..+.. ...||+..|.+.+++.++..++ .++++|+
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~-----~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAY-----GTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-----cCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999997 678899999999999997542000 1146999999888887777666 4445655
No 92
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.72 E-value=2e-16 Score=132.69 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=126.0
Q ss_pred Hhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy6455 48 SFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126 (249)
Q Consensus 48 ~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~ 126 (249)
....|. +.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 315 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN 315 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344554 4456899988999988888888888999999999999999988877766665555555567777777888888
Q ss_pred HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL 206 (249)
Q Consensus 127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 206 (249)
+++.|...+....+..|.+|+ +|+++.++++....+|..++|.+++.+. +..+|+..+.+.+++.++.
T Consensus 316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~-----------~~~g~~~~~~~~~~~~~~~ 383 (393)
T PRK15011 316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVA-----------EIWNYHAVFWFALVMIIAT 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHH
Confidence 887777667777888899885 5899999998888999999999999997 4458999999888888888
Q ss_pred HHHhhcccC
Q psy6455 207 ALWLTRFPE 215 (249)
Q Consensus 207 ~~~~~~~~~ 215 (249)
.+..++.||
T Consensus 384 ~~~~~~~~~ 392 (393)
T PRK15011 384 LFCLLRIKD 392 (393)
T ss_pred HHHHHhhcC
Confidence 877776664
No 93
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.72 E-value=7.4e-17 Score=134.86 Aligned_cols=157 Identities=11% Similarity=0.012 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHH----HHHHHHHHHHHHHH
Q psy6455 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITL----IGALLVDGLCGIAS 110 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~i~~~~~ 110 (249)
+.++..........+++|.+.+++|.|..+++++.+.+.+...++++++|+++||+||++.. ..+..+..+ ..+
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH
Confidence 34444455567778889999999999999999999999999999999999999999985433 222222222 233
Q ss_pred HhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccc
Q psy6455 111 SVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYS 190 (249)
Q Consensus 111 ~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~ 190 (249)
..+++++.+++.|++.|.+.+...+...++..+. .++|++..+......++|.+++|.+++.+. +..
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~-----------~~~ 155 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI-----------GMF 155 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH-----------HHc
Confidence 4678899999999999988888888887777654 477899999999999999999999999997 446
Q ss_pred hhHHHHHHHHHHHHHH
Q psy6455 191 SWNLFVTLVSVPSILL 206 (249)
Q Consensus 191 ~w~~~~~~~~~~~~~~ 206 (249)
|||..|.+.++..++.
T Consensus 156 g~~~~f~~~~~~~~~~ 171 (382)
T TIGR00902 156 DEQNILAILTAGLAFM 171 (382)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 9999988876554333
No 94
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.72 E-value=9e-17 Score=132.99 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=129.5
Q ss_pred HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-----chhHHH-HHHHHHHHHHHHHHHhh---hH
Q psy6455 45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-----GRKITL-IGALLVDGLCGIASSVA---QY 115 (249)
Q Consensus 45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-----Grr~~~-~~~~~~~~i~~~~~~~~---~~ 115 (249)
...++.+|.+.+++|+|.++.++..+. .+...+ .+++|+++||+ ||||.+ +.+.++.++....+.+. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 456677888899999999999999755 444444 99999999998 899974 56677777776666665 45
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455 116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF 195 (249)
Q Consensus 116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~ 195 (249)
.+.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+....+. .....++||..
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~---~~~~~~~wr~~ 159 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA---NTGLITLWGYI 159 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccccccccHHH
Confidence 666777777888888888888899999999999999999999999999999999999888643310 00123459999
Q ss_pred HHHHHHHHHHHHHHhhc-ccCC
Q psy6455 196 VTLVSVPSILLALWLTR-FPES 216 (249)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-~~~~ 216 (249)
|++.++..++..+..++ .||+
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCC
Confidence 99998887776666544 4664
No 95
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.72 E-value=2.9e-16 Score=147.96 Aligned_cols=173 Identities=14% Similarity=-0.019 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHhhcc-ccccccCCCC-cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHH---HHHHHHHHHH
Q psy6455 34 GLLYAYAAISITVLSFVLP-SAQCDFGMTS-SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG---ALLVDGLCGI 108 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~i~~~ 108 (249)
++..+...+....+..+.. .+..+.+.+. ...++..+.+.+.+.++++++|+++||+|||+++.. +.++..+..+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~ 100 (1140)
T PRK06814 21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI 100 (1140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3333433333333333332 3334444333 346888889999999999999999999999997643 2222222223
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Q psy6455 109 ASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFL 188 (249)
Q Consensus 109 ~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~ 188 (249)
.....++++.++++|+++|++.+...+...+++.+++++++|++++++.+++..+|.++||.+++++. +
T Consensus 101 ~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~-----------~ 169 (1140)
T PRK06814 101 YGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT-----------I 169 (1140)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH-----------h
Confidence 33344789999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455 189 YSSWNLFVTLVSVPSILLALWLTRFPESP 217 (249)
Q Consensus 189 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
..+|++.|+..++..++..++.+++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 170 SGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 45899998666566666555566666543
No 96
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.72 E-value=1.2e-16 Score=132.56 Aligned_cols=148 Identities=14% Similarity=0.010 Sum_probs=124.0
Q ss_pred hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHH
Q psy6455 49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY--YGVFLALRFIN 126 (249)
Q Consensus 49 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~~~l~ 126 (249)
...+.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++..++.+...+.++ ...+.+..++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 3344456778888888999999999999999999999999999999999998888888777666553 23344567788
Q ss_pred HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL 206 (249)
Q Consensus 127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 206 (249)
|++.+...+....++.|.+|+++|++..++.+....+|..++|.+.+.+. +..+|++.|.+.+++.+++
T Consensus 306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-----------~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL-----------TEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH-----------hhhchhhHHHHHHHHHHHh
Confidence 88888888888889999999999999999999999999999999999987 4468999998888777665
Q ss_pred H
Q psy6455 207 A 207 (249)
Q Consensus 207 ~ 207 (249)
.
T Consensus 375 ~ 375 (377)
T TIGR00890 375 L 375 (377)
T ss_pred c
Confidence 4
No 97
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.71 E-value=1.4e-16 Score=134.88 Aligned_cols=145 Identities=16% Similarity=0.054 Sum_probs=123.6
Q ss_pred ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccc
Q psy6455 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGI 136 (249)
Q Consensus 57 ~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~ 136 (249)
+.+.+..+.+++.+...++..++.+++|+++||+|+|+.+..+.++..++.++..++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677899999999999999999999999999999999999988888888888888888889999999988877777
Q ss_pred cccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 137 CFPYLGEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 137 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
...++.|.+|++.|++..+. ++....+|.+++|.+.+++. +..||+..|.+.+++.++..++.++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~-----------~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY-----------DSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH-----------HhhCchHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999887765 67788899999999999998 4458999999888877766655433
No 98
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.71 E-value=4.6e-16 Score=130.54 Aligned_cols=169 Identities=14% Similarity=0.130 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcchhHHH-HHHHHHHHHHHHHHHhh
Q psy6455 37 YAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQGRKITL-IGALLVDGLCGIASSVA 113 (249)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~ 113 (249)
.+..........+.+|. +.+++|.|.++.|++.+...+ +..++.+.+++ +||+||||.+ +.+.++..++..+..++
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 102 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555565555 567899999999999876655 55555545555 9999999875 45566666777777888
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccccccccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455 114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYR--EKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS 191 (249)
Q Consensus 114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~ 191 (249)
++++.+++.+.+.|...+...+....+..|+.+++.| +...++.+.+.++|.+++|.+++.+. +..|
T Consensus 103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~-----------~~~g 171 (393)
T PRK15011 103 RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA-----------MGFS 171 (393)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------HhcC
Confidence 8888876665554444456677777888887776655 34457888899999999999999997 4469
Q ss_pred hHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455 192 WNLFVTLVSVPSILLALW-LTRFPESP 217 (249)
Q Consensus 192 w~~~~~~~~~~~~~~~~~-~~~~~~~~ 217 (249)
||..|+..++..++..+. .+++||.+
T Consensus 172 w~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 172 FTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 999999988877766655 44467654
No 99
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.70 E-value=5.9e-16 Score=145.96 Aligned_cols=129 Identities=15% Similarity=0.045 Sum_probs=109.3
Q ss_pred hccccccccCCCC--cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHH
Q psy6455 50 VLPSAQCDFGMTS--SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---VAQYYGVFLALRF 124 (249)
Q Consensus 50 ~~~~~~~~~~~s~--~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~~~ 124 (249)
..+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.. ..++++.++++|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 111 (1146)
T PRK08633 32 IQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTF 111 (1146)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3334444555543 3468999999999999999999999999999999998877665555433 3467899999999
Q ss_pred HHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455 125 INGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 125 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 178 (249)
+.|++.+...+...+++.|++|+++|++++++.+.+..+|.++|+.+++++...
T Consensus 112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 112 LLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998743
No 100
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.70 E-value=9.8e-16 Score=125.76 Aligned_cols=164 Identities=21% Similarity=0.263 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhH-HHHHHHHHHHHHHHHHHhhhHH
Q psy6455 39 YAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI-TLIGALLVDGLCGIASSVAQYY 116 (249)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~~ 116 (249)
.............|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+ .+..+.++..++.+.....++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 265 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH
Confidence 3334444555566666655 4889999999999999999999999999999999999 9999999999999988888888
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455 117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV 196 (249)
Q Consensus 117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~ 196 (249)
+...+..++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.+.+. +..+|+..+
T Consensus 266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~-----------~~~~~~~~~ 334 (352)
T cd06174 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL-----------DTGGYGGVF 334 (352)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cccCcchHH
Confidence 888999999999999999999999999999999999999999999999999999999997 446899999
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy6455 197 TLVSVPSILLALWLTRF 213 (249)
Q Consensus 197 ~~~~~~~~~~~~~~~~~ 213 (249)
.+.+++.++..+..+++
T Consensus 335 ~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 335 LILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHHHHHHHHheec
Confidence 99999888887765543
No 101
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.69 E-value=1.6e-15 Score=127.51 Aligned_cols=155 Identities=14% Similarity=0.010 Sum_probs=127.7
Q ss_pred hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy6455 49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGF 128 (249)
Q Consensus 49 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~ 128 (249)
.+++.+.++.|. ...++..+.+.++..++.++.|++.||+|+|+.+..+..+..++.+...+.++.+.+++..++.|+
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 314 (399)
T PRK05122 237 TFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGF 314 (399)
T ss_pred HHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444445555 345677778888999999999999999999999999888888887777777888888888999999
Q ss_pred hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455 129 AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL 208 (249)
Q Consensus 129 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 208 (249)
+.+..++.....+.|..|+++|+++.++++....+|..+++.+.+.+. +..+|+..+++.+++.++..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-----------~~~g~~~~~~~~~~~~~~~~~ 383 (399)
T PRK05122 315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA-----------SWFGYPSIFLAAALAALLGLA 383 (399)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCHHHHHHHHHHHHHHHHH
Confidence 988888877778889999999999999999999999999999988887 445899999998888888777
Q ss_pred HhhcccCC
Q psy6455 209 WLTRFPES 216 (249)
Q Consensus 209 ~~~~~~~~ 216 (249)
..++++++
T Consensus 384 ~~~~~~~~ 391 (399)
T PRK05122 384 LTWLLYRR 391 (399)
T ss_pred HHHHhccc
Confidence 76555443
No 102
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.68 E-value=3.3e-15 Score=124.26 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=126.4
Q ss_pred hcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy6455 50 VLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGF 128 (249)
Q Consensus 50 ~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~ 128 (249)
..|.+ .+++|.++.+.+++.....+...++.++.|++.||+|||+.+.++.++..+......+.++.+.+.+.+++.|+
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 300 (375)
T TIGR00899 221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAI 300 (375)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 46689999999988888777788889999999999999999888877766665555666778878888899999
Q ss_pred hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455 129 AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL 208 (249)
Q Consensus 129 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 208 (249)
+.+...+....++.|..|+ +++++.++++....+|..++|.+++.+. +..+|+..+++.++..++..+
T Consensus 301 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~-----------~~~g~~~~~~~~~~~~~~~~~ 368 (375)
T TIGR00899 301 FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA-----------ERWSYHAVYWFAIVMLIVALF 368 (375)
T ss_pred HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhccchhHHHHHHHHHHHHHH
Confidence 8888888888889999875 5679999999998999999999999987 445899999999888888877
Q ss_pred HhhcccC
Q psy6455 209 WLTRFPE 215 (249)
Q Consensus 209 ~~~~~~~ 215 (249)
...+++|
T Consensus 369 ~~~~~~~ 375 (375)
T TIGR00899 369 CLLLIKD 375 (375)
T ss_pred HHheecC
Confidence 7665543
No 103
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.68 E-value=1.1e-15 Score=128.33 Aligned_cols=167 Identities=15% Similarity=0.077 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH---H
Q psy6455 36 LYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS---S 111 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~ 111 (249)
..++.........+++|.+ .+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.++.+.+..+++.... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 89 (396)
T TIGR00882 10 FFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYV 89 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666666665 45689999999999999999999999999999999999999988766665443322 1
Q ss_pred hh-----hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455 112 VA-----QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186 (249)
Q Consensus 112 ~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 186 (249)
+. +......+.+++.|++.+...+....+..|..+ +++...+......++|.+++|.+++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~---------- 157 (396)
T TIGR00882 90 FGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF---------- 157 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh----------
Confidence 11 123345667888888888777777777666533 3345667777778899999999998874
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhc-ccCC
Q psy6455 187 FLYSSWNLFVTLVSVPSILLALWLTR-FPES 216 (249)
Q Consensus 187 ~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (249)
..+|+..|++.+++.++..++.+. .+|+
T Consensus 158 --~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 158 --SIDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred --ccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 248999999988888777665544 3443
No 104
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.67 E-value=2.7e-15 Score=125.42 Aligned_cols=152 Identities=11% Similarity=0.002 Sum_probs=131.0
Q ss_pred HHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455 46 VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI 125 (249)
Q Consensus 46 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l 125 (249)
......|.+.++.|.+..+.+++.+...++..++.++.+++.||+|+|+.+.++.+...+..+..++.++.+.+++.+++
T Consensus 223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l 302 (382)
T TIGR00902 223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQIL 302 (382)
T ss_pred HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence 33445555557799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHH
Q psy6455 126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLE-MFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSI 204 (249)
Q Consensus 126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 204 (249)
.|++.+...+....++++. |+++|++++++++ ....+|..++|.++|++. +..++ ..|.+.+++++
T Consensus 303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~-----------~~~g~-~~~~~~~~~~~ 369 (382)
T TIGR00902 303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY-----------PTLGA-GTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhccH-HHHHHHHHHHH
Confidence 9999999999999999998 9999999999986 567899999999999998 34465 56777777776
Q ss_pred HHHHHh
Q psy6455 205 LLALWL 210 (249)
Q Consensus 205 ~~~~~~ 210 (249)
++.++.
T Consensus 370 ~~~~~~ 375 (382)
T TIGR00902 370 AAFFLI 375 (382)
T ss_pred HHHHHH
Confidence 665544
No 105
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.66 E-value=3.6e-15 Score=126.12 Aligned_cols=160 Identities=14% Similarity=0.064 Sum_probs=131.6
Q ss_pred HHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455 47 LSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI 125 (249)
Q Consensus 47 ~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l 125 (249)
.....|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...+..++
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 34456666666 89999999999999999999999999999999888888888888888887777778888777888889
Q ss_pred HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHH
Q psy6455 126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL 205 (249)
Q Consensus 126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 205 (249)
.|++.+...+...+++.|..|++.|+++.++++....+|..++|.+.+++. +..+++..+.+.++..++
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~-----------~~~g~~~~~~~~~~~~~~ 390 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG-----------AMMTPVASASASGFGLLI 390 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH-----------HHhchhhHHHHHHHHHHH
Confidence 999888777777889999999999999999999999999999999999997 445777777777666555
Q ss_pred HHHH-hhcccCCh
Q psy6455 206 LALW-LTRFPESP 217 (249)
Q Consensus 206 ~~~~-~~~~~~~~ 217 (249)
..+. ....++.+
T Consensus 391 ~~~~~~~~~~~~~ 403 (417)
T PRK10489 391 IGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHhccccc
Confidence 5444 44456543
No 106
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.66 E-value=3.2e-15 Score=128.25 Aligned_cols=181 Identities=14% Similarity=0.054 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH-
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA- 109 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~- 109 (249)
...+..++...........+|.+ .+++|.|..+.++..+...++..++.+++|+++||+|||+.++....+..++...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~ 341 (467)
T PRK09556 262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLG 341 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHH
Confidence 33444444444444556667765 4669999999999999999999999999999999999998776654444433222
Q ss_pred -HHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcc-c-ccccCc
Q psy6455 110 -SSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTG-GIIVLPAVAWLLIPL-N-LRIETP 185 (249)
Q Consensus 110 -~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~-~-~~~~~~ 185 (249)
....++.....+.+++.|++.............|.+|++.|+++.++.+....+ |..++|.+.|++.+. . ++...
T Consensus 342 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~- 420 (467)
T PRK09556 342 VYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIF- 420 (467)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccc-
Confidence 223345556667788888654443333345677999999999999999888776 779999999999861 1 00000
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 186 YFLYSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 186 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
.....+|+..|.+.++..+++.+..+++
T Consensus 421 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 421 GYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 0013579999998888877776665443
No 107
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.65 E-value=2.6e-15 Score=127.09 Aligned_cols=166 Identities=13% Similarity=0.008 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH---
Q psy6455 36 LYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS--- 111 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--- 111 (249)
..++.........+++|.+ .+++|+|..+.|++.+.+.++..++++++|+++||+|||++++++..+.+++.....
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 97 (420)
T PRK09528 18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYV 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555556554 455999999999999999999999999999999999999998887665554432211
Q ss_pred hhhHHH-HHHHHHHHHHhhhcccccccccccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Q psy6455 112 VAQYYG-VFLALRFINGFAVTGTLGICFPYLGEFQP--TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFL 188 (249)
Q Consensus 112 ~~~~~~-~l~~~~~l~G~~~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~ 188 (249)
..+... ......++.++..+.........+.++.+ .++++...+.......+|..++|.+++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----------- 166 (420)
T PRK09528 98 FAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN----------- 166 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-----------
Confidence 111111 01112222233333222222222333322 2456667788888889999999999998852
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 189 YSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 189 ~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
.+|++.|++.+++.++..+..++.
T Consensus 167 -~~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 167 -INPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred -cCchHhHHHHHHHHHHHHHHHhcc
Confidence 378999988887777766665554
No 108
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.65 E-value=1.1e-15 Score=130.65 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=123.9
Q ss_pred HHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc--chhHHHHH--HHHHHHHHHHHHHhhhHHHH
Q psy6455 43 SITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ--GRKITLIG--ALLVDGLCGIASSVAQYYGV 118 (249)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~~~~ 118 (249)
.......++|.+.++.|.+..+.+++.+...++..+++++.|+++||. ++|+...+ +.++..++.+++.+.++++.
T Consensus 256 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 335 (455)
T TIGR00892 256 GFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTG 335 (455)
T ss_pred HccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 333334455666677899999999999999999999999999999973 34443333 33434444555566778888
Q ss_pred HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHH
Q psy6455 119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTL 198 (249)
Q Consensus 119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~ 198 (249)
+++.+++.|++.+...+...+++.|.+|++++++.+++++....+|..++|.+++.+.+.. .+|++.|++
T Consensus 336 ~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~----------g~~~~~f~~ 405 (455)
T TIGR00892 336 LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT----------KNYKYIFYA 405 (455)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc----------CCcchHHHH
Confidence 8889999999999888888999999999999999999999999999999999999887322 368899988
Q ss_pred HHHHHHHHHHH
Q psy6455 199 VSVPSILLALW 209 (249)
Q Consensus 199 ~~~~~~~~~~~ 209 (249)
.+++.+++.+.
T Consensus 406 ~~~~~li~~~~ 416 (455)
T TIGR00892 406 SGSIVVSAGLF 416 (455)
T ss_pred hhHHHHHHHHH
Confidence 88877666554
No 109
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.64 E-value=3.7e-15 Score=125.43 Aligned_cols=137 Identities=18% Similarity=0.149 Sum_probs=118.7
Q ss_pred hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccc
Q psy6455 65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEF 144 (249)
Q Consensus 65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~ 144 (249)
.+.+.+...++..++.+..|+++||+|||+.+..+.++..++.+...+.++.+.+.+.+++.|++.+...+...+.+.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45566677788889999999999999999999999888887777777777888888899999999998888888888999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 145 QPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 145 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
.|+++|++..++++....+|..++|.+++.+. +..+|+..|++.+++.++..+..++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~-----------~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS-----------ANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHH-----------hhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997 4468999999998888887776544
No 110
>PRK03545 putative arabinose transporter; Provisional
Probab=99.64 E-value=1.4e-14 Score=121.50 Aligned_cols=149 Identities=13% Similarity=0.042 Sum_probs=119.3
Q ss_pred ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHhh
Q psy6455 51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI-ASSVAQYYGVFLALRFINGFA 129 (249)
Q Consensus 51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~~~l~G~~ 129 (249)
.|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+..+ +..+..++.. .....++.+.+.+..++.|++
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~ 307 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIA 307 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34455558999999999999999999999999999999999887544 4444444333 334566777788888899998
Q ss_pred hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455 130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209 (249)
Q Consensus 130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 209 (249)
.+...+.....+.|..| ++|++++++++....+|..+||.+++.+. +..+++..+.+.+++.+++++.
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~-----------~~~g~~~~~~~~~~~~~~~~~~ 375 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS-----------LHLGLSSIGYVGAALALAALVW 375 (390)
T ss_pred HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccChhHHHHHHHHHHHHHHHH
Confidence 77766777778888876 68899999999999999999999999998 5579999999998888887776
Q ss_pred hhc
Q psy6455 210 LTR 212 (249)
Q Consensus 210 ~~~ 212 (249)
...
T Consensus 376 ~~~ 378 (390)
T PRK03545 376 SIL 378 (390)
T ss_pred HHH
Confidence 544
No 111
>PRK09952 shikimate transporter; Provisional
Probab=99.64 E-value=1.4e-14 Score=123.33 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=119.8
Q ss_pred HHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh---h-hHHHH
Q psy6455 44 ITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV---A-QYYGV 118 (249)
Q Consensus 44 ~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~ 118 (249)
.+......|.+ .+++|.+......+.....+...++.++.|+++||+|||+.++.+.++.+++.+.... . ++.+.
T Consensus 266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (438)
T PRK09952 266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWI 345 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 33344444444 4568888766656666667777889999999999999999988887766555433322 1 23444
Q ss_pred HHHHHHHHHhhhcccccccccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455 119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT 197 (249)
Q Consensus 119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~ 197 (249)
+++..++.+++.+...+..+++++|.+|++.|+++.++ ++.+..+|+.++|.+.+++.+.. ..+|...+.
T Consensus 346 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~---------~~~~~~~~~ 416 (438)
T PRK09952 346 VFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF---------GGSWHSVAI 416 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCchHHHH
Confidence 45566677888777788888999999999999999998 45556689999999999987432 135888888
Q ss_pred HHHHHHHHHHHHhhcccCC
Q psy6455 198 LVSVPSILLALWLTRFPES 216 (249)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~ 216 (249)
+.++..++..+..+.++|+
T Consensus 417 ~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 417 YLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 8888888887776666654
No 112
>KOG2504|consensus
Probab=99.63 E-value=6.8e-16 Score=132.26 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=153.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD 103 (249)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (249)
-+-|.+.+..++............+.+.+.+.++++.+.++++|+.++......+..++.+.+.||+|.|.+.++|.++.
T Consensus 42 G~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~ 121 (509)
T KOG2504|consen 42 GWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVA 121 (509)
T ss_pred CeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHH
Confidence 34465555555555554444555667778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHH-HHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455 104 GLCGIASSVAQYYGVFLALR-FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI 182 (249)
Q Consensus 104 ~i~~~~~~~~~~~~~l~~~~-~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 182 (249)
.++.++.++++++|.+++.. ++.|+|.|..+....+.+..+|+ ++|+.+.++...+.++|..+-|.+..++.
T Consensus 122 ~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~------ 194 (509)
T KOG2504|consen 122 ALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLL------ 194 (509)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHH------
Confidence 99999999999999888766 88899999999999999998885 78999999999999999999999999998
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455 183 ETPYFLYSSWNLFVTLVSVPSILLALWLTRFP 214 (249)
Q Consensus 183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
+..|||..+++.+.+.+-.++.....+
T Consensus 195 -----~~~G~r~~~l~~~~~~l~~~~~~~~~r 221 (509)
T KOG2504|consen 195 -----SKYGWRGALLIFGGISLNVLVAGALLR 221 (509)
T ss_pred -----HHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 557999999999988877777755543
No 113
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.63 E-value=1.5e-14 Score=122.76 Aligned_cols=184 Identities=16% Similarity=0.116 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh----hcchhHHHHHH-HHHHHHHHH
Q psy6455 34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKITLIGA-LLVDGLCGI 108 (249)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~ 108 (249)
....+...+.+....+.++.+.+++|.+....+++..+..+...+.+++.|+++| |+||||.++++ .+..+++..
T Consensus 10 ~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ 89 (477)
T TIGR01301 10 ASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVI 89 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 3344444556666666677777889999999999999999999999999999999 59999998875 566666666
Q ss_pred HHHhhhHHH-----------------HHHHHHHHHHhhhcccccccccccccccccchh--HHHHHHHHHHHHHHHHHHH
Q psy6455 109 ASSVAQYYG-----------------VFLALRFINGFAVTGTLGICFPYLGEFQPTAYR--EKVLCWLEMFWTGGIIVLP 169 (249)
Q Consensus 109 ~~~~~~~~~-----------------~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~ 169 (249)
+++++++.+ ..+++..+..++....+++..++++|.+|+++| +.+.++.+...++|.++++
T Consensus 90 ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~ 169 (477)
T TIGR01301 90 LIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGY 169 (477)
T ss_pred HHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655532 233344445567777888889999999998865 5788999999999999999
Q ss_pred HHHHHHh--ccccc--ccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455 170 AVAWLLI--PLNLR--IETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESP 217 (249)
Q Consensus 170 ~l~~~l~--~~~~~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~ 217 (249)
.++++.. +.... ......-..+.+..|++.++..++..++ .+..+|.|
T Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 170 AAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 9998751 11000 0000001136789999988888777766 44467764
No 114
>PRK12382 putative transporter; Provisional
Probab=99.63 E-value=1.4e-14 Score=121.47 Aligned_cols=153 Identities=16% Similarity=0.020 Sum_probs=126.9
Q ss_pred HHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy6455 47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126 (249)
Q Consensus 47 ~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~ 126 (249)
...+.|.+.++.|.+ ..++..+.+.++..+++++.|++.||+|+|+.+..+..+..++.++..+.++.+.+.+..++.
T Consensus 235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (392)
T PRK12382 235 IGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT 312 (392)
T ss_pred HHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 333444444555554 356667778888899999999999999999999999888888887777777887788889999
Q ss_pred HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL 206 (249)
Q Consensus 127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 206 (249)
|++.+...+.....+.|.+|+++|+++.++++....+|..++|.+.+++. +..+|+..|.+.+++.++.
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~-----------~~~g~~~~~~~~~~~~~~~ 381 (392)
T PRK12382 313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA-----------TSFGYPSVFLAGAISAVLG 381 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCchHHHHHHHHHHHHH
Confidence 99988888888888899999999999999999999999999999999997 4468999999998888777
Q ss_pred HHHhhc
Q psy6455 207 ALWLTR 212 (249)
Q Consensus 207 ~~~~~~ 212 (249)
.+..++
T Consensus 382 ~~~~~~ 387 (392)
T PRK12382 382 IIVTIL 387 (392)
T ss_pred HHHHHh
Confidence 776543
No 115
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.63 E-value=1e-14 Score=124.65 Aligned_cols=161 Identities=11% Similarity=0.025 Sum_probs=122.3
Q ss_pred HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-----h-----
Q psy6455 45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-----Q----- 114 (249)
Q Consensus 45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~----- 114 (249)
.....+.|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++..+. +
T Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (481)
T TIGR00879 301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS 380 (481)
T ss_pred eehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence 344556677778889998888999999999999999999999999999999999888877776665521 1
Q ss_pred -HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455 115 -YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN 193 (249)
Q Consensus 115 -~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~ 193 (249)
+...+....++.+.......+....++.|.+|++.|+++.++.+....+|.+++|.+.+.+. +..+|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~-----------~~~~~~ 449 (481)
T TIGR00879 381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML-----------ESIGVG 449 (481)
T ss_pred hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCcc
Confidence 22222233333332222334666778899999999999999999999999999999999886 345788
Q ss_pred HHHHHHHHHHHHHHHHhhc-ccCC
Q psy6455 194 LFVTLVSVPSILLALWLTR-FPES 216 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~ 216 (249)
+.|++.++++++..++.++ .||+
T Consensus 450 ~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 450 GVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred ceehhHHHHHHHHHHHHheecccC
Confidence 8888888888777776544 5654
No 116
>PRK03699 putative transporter; Provisional
Probab=99.62 E-value=4.5e-15 Score=124.60 Aligned_cols=162 Identities=10% Similarity=-0.012 Sum_probs=128.4
Q ss_pred HHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy6455 42 ISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120 (249)
Q Consensus 42 ~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~ 120 (249)
........+.|.+. +++|.|..+.+++.+.+.++..++.++.|+++||++||+.+.....+..+..++....++.+.+.
T Consensus 219 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 298 (394)
T PRK03699 219 LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLL 298 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 33444556677666 56899999999999999999999999999999999999998888777777666666666766666
Q ss_pred HHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHH
Q psy6455 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVS 200 (249)
Q Consensus 121 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~ 200 (249)
+..++.|++.+..++...++..|..| +.+++..+.......+|..++|.+.+++. +..|++..++..+
T Consensus 299 ~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~-----------~~~g~~~~~~~~~ 366 (394)
T PRK03699 299 YAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIV-----------AHFGLQAALLTAN 366 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHH-----------HHhCchhhhhhhH
Confidence 77788898888777877777778776 44677788888888899999999999997 4458888888888
Q ss_pred HHHHHHHHHhhcccC
Q psy6455 201 VPSILLALWLTRFPE 215 (249)
Q Consensus 201 ~~~~~~~~~~~~~~~ 215 (249)
++.+++.+....+++
T Consensus 367 ~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 367 GLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777665555443
No 117
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.62 E-value=2.6e-14 Score=120.36 Aligned_cols=163 Identities=14% Similarity=0.119 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHH-HHHHHHHHHHHHHHh----
Q psy6455 38 AYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLI-GALLVDGLCGIASSV---- 112 (249)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~---- 112 (249)
++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...++.+.+..
T Consensus 232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 311 (402)
T TIGR00897 232 IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH 311 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344445556677777889999999999999999999999999999999999988764 333333333322222
Q ss_pred -hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455 113 -AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS 191 (249)
Q Consensus 113 -~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~ 191 (249)
.++.+...+..++.|++.+...+ ....+.|.. +++|+++.++.+....+|..++|.+.+.+. +..|
T Consensus 312 ~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~-----------~~~g 378 (402)
T TIGR00897 312 FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFI-----------GFFG 378 (402)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhcc
Confidence 23556667778888887776544 345666765 468999999999999999999999999998 4458
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc
Q psy6455 192 WNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 192 w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
|...+++.+++.++..+...++
T Consensus 379 ~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 379 AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888877765554
No 118
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.62 E-value=1.8e-14 Score=121.01 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=123.6
Q ss_pred HHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh-HHHHHH
Q psy6455 42 ISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ-YYGVFL 120 (249)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~ 120 (249)
..........|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.++.+..+..++..+....+ +...+
T Consensus 219 ~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 297 (393)
T PRK09705 219 GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL- 297 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH-
Confidence 3344455556666667899999999999999999999999999999999999999888877777665544322 22222
Q ss_pred HHHHHHHhhhcccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHH
Q psy6455 121 ALRFINGFAVTGTLGICFPYLGEFQP-TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLV 199 (249)
Q Consensus 121 ~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~ 199 (249)
..++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+.. .+|...+.+.
T Consensus 298 -~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~----------g~~~~~~~~~ 366 (393)
T PRK09705 298 -WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS----------GNYLMDWAFH 366 (393)
T ss_pred -HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCchHHHHHH
Confidence 2345678777777777666667764 578999999999999999999999999998543 3577778877
Q ss_pred HHHHHHHHHH-hhcccCChh
Q psy6455 200 SVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 200 ~~~~~~~~~~-~~~~~~~~~ 218 (249)
++..++..++ ..+.||+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 367 ALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHHHHHHHHhcccccc
Confidence 7777666665 334566654
No 119
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.61 E-value=2.8e-14 Score=119.25 Aligned_cols=151 Identities=23% Similarity=0.186 Sum_probs=121.4
Q ss_pred hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy6455 49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGF 128 (249)
Q Consensus 49 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~ 128 (249)
.++|.+.++.|.+..+.+++.+...++..+++++.|+++||+|+|+++..+..+..++..... . ........++.|+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence 445666677899988999999999999999999999999999999999888877777654432 2 2233456677787
Q ss_pred hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455 129 AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL 208 (249)
Q Consensus 129 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 208 (249)
+.+...|...+++.|..|+++++...+.++....+|..++|.+++++. +..+|++.|.+.+.+.++..+
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~-----------~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM-----------QNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCccHHHHHHHHHHHHHHH
Confidence 766778888888999999888888888888889999999999999997 446889999988888877766
Q ss_pred Hhhcc
Q psy6455 209 WLTRF 213 (249)
Q Consensus 209 ~~~~~ 213 (249)
..++.
T Consensus 367 ~~~~~ 371 (381)
T PRK03633 367 MLLRK 371 (381)
T ss_pred HHHhc
Confidence 55543
No 120
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.61 E-value=3.6e-14 Score=118.27 Aligned_cols=167 Identities=18% Similarity=0.106 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhH--HHH------HHHHHH
Q psy6455 33 GGLLYAYAAISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI--TLI------GALLVD 103 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~--~~~------~~~~~~ 103 (249)
..+..+.............|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T TIGR00893 220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 33344444444555555666554 558889899999999999999999999999999999996 111 111111
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455 104 GLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE 183 (249)
Q Consensus 104 ~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 183 (249)
.+........++.+.......+.+++.+ ..+...++++|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~------ 372 (399)
T TIGR00893 300 SLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA------ 372 (399)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc------
Confidence 1111112222344444444444444444 688889999999999999999999999999999999999999974
Q ss_pred Ccccccch-hHHHHHHHHHHHHHHHHHhh
Q psy6455 184 TPYFLYSS-WNLFVTLVSVPSILLALWLT 211 (249)
Q Consensus 184 ~~~~~~~~-w~~~~~~~~~~~~~~~~~~~ 211 (249)
..+ |+..+.+.++..++..+..+
T Consensus 373 -----~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 373 -----TTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHH
Confidence 345 88888888887777666543
No 121
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.61 E-value=5.6e-14 Score=121.61 Aligned_cols=181 Identities=17% Similarity=0.078 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCcchhh------------HHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455 37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGW------------LNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG 104 (249)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (249)
.+...+..+......|.+.++.|.+....+. ......++..++.++.++++||+|||++++++.++.+
T Consensus 297 ~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~ 376 (502)
T TIGR00887 297 WFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILT 376 (502)
T ss_pred HHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Confidence 3333334444555577777777876543221 1233445666788899999999999999988887777
Q ss_pred HHHHHHHhhhH----HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy6455 105 LCGIASSVAQY----YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180 (249)
Q Consensus 105 i~~~~~~~~~~----~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 180 (249)
++..+..+..+ ...+...-+...++..+..+....+.+|.+|++.|+++.++.+....++..++|.+.+++.+...
T Consensus 377 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (502)
T TIGR00887 377 VLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGD 456 (502)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccc
Confidence 76655544321 11111111122222223455667788999999999999999999999999999999998874320
Q ss_pred cccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChh
Q psy6455 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPK 218 (249)
Q Consensus 181 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
.. .+.....++...|++.+++.++..+..+++||++.
T Consensus 457 ~~-~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 457 PT-KGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred cc-ccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence 00 00000134556777777777777666666788743
No 122
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.60 E-value=2.3e-14 Score=123.41 Aligned_cols=169 Identities=17% Similarity=0.131 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-
Q psy6455 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA- 113 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~- 113 (249)
.+.....+...+....++-+..+..-|+...+++..+..+...+.++++|.++||++||++++.+.++.++......+.
T Consensus 17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~ 96 (524)
T PF05977_consen 17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLA 96 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444555666688899999999999999999999999999999999999988877665544332
Q ss_pred ----hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455 114 ----QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY 189 (249)
Q Consensus 114 ----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~ 189 (249)
.+.+.+++..++.|++.+...|...+++.|+.|+++...++++.+...++..++||.++|.+. ..
T Consensus 97 ~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv-----------a~ 165 (524)
T PF05977_consen 97 FFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV-----------AF 165 (524)
T ss_pred HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH-----------HH
Confidence 367888999999999999999999999999999999999999999999999999999999987 33
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccc
Q psy6455 190 SSWNLFVTLVSVPSILLALWLTRFP 214 (249)
Q Consensus 190 ~~w~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
.|-.+.|.+.++..++..+.+...+
T Consensus 166 ~G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 166 FGAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4777888888776666655555554
No 123
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.60 E-value=8.6e-14 Score=119.66 Aligned_cols=167 Identities=16% Similarity=-0.024 Sum_probs=120.2
Q ss_pred HHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh--H-H-HHHHH
Q psy6455 46 VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ--Y-Y-GVFLA 121 (249)
Q Consensus 46 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~-~-~~l~~ 121 (249)
....+.|.+.++.|.+.....+......++..++.++.|+++||+|||++++.+.++.+++.+++.... + . .....
T Consensus 289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 334556777788898887778888888889999999999999999999999999999888877665432 1 1 12233
Q ss_pred HHHHHHhhhcc-cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHH
Q psy6455 122 LRFINGFAVTG-TLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVS 200 (249)
Q Consensus 122 ~~~l~G~~~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~ 200 (249)
+.++.+++.+. ..+..+.+++|.+|+++|++++++.+....+|..+++.+.+.+.+.. . ..+..+|+..|++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~-~----~~~~~~~~~~~~~~~ 443 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNS-W----LVAHFHNGFSYWIYG 443 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-c----hhhhccCccHHHHHH
Confidence 34444444443 23667899999999999999999999999999988877766543100 0 003457788888877
Q ss_pred HHHHHHHHHhh-cccCCh
Q psy6455 201 VPSILLALWLT-RFPESP 217 (249)
Q Consensus 201 ~~~~~~~~~~~-~~~~~~ 217 (249)
++.++.+++.+ +.||++
T Consensus 444 ~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 444 CMGVLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHHHHhccccCC
Confidence 77766666644 456653
No 124
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.59 E-value=1.1e-14 Score=125.70 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=111.4
Q ss_pred Hhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Q psy6455 48 SFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA--QYYGVFLALRF 124 (249)
Q Consensus 48 ~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~~~ 124 (249)
...+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||++++.+.++..+..+..... .+.+.+.+..+
T Consensus 295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34566666 5789999999999999999999999999999999999999888877666655443332 33444444455
Q ss_pred HHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHH
Q psy6455 125 INGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPS 203 (249)
Q Consensus 125 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 203 (249)
+.++...+..+..++++.|.+|+++|++.+++.+....+|..++|.+++.+. +..+|+..+...+...
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~-----------~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA-----------QRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh-----------ccCChHHHHHHHHHHH
Confidence 5444333445667788999999999999999999988999999999999997 4457877775554433
No 125
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.58 E-value=8.5e-15 Score=122.18 Aligned_cols=159 Identities=15% Similarity=0.151 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH--HHHHh
Q psy6455 36 LYAYAAISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG--IASSV 112 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~~ 112 (249)
..+.............|.+. +++|.+..+.+.+.....++..++.++.|+++||+|||+.+..+..+..+.. ....+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (394)
T TIGR00883 227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL 306 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555666655 6688999999999999999999999999999999999998776554444332 12222
Q ss_pred --hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455 113 --AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY 189 (249)
Q Consensus 113 --~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~ 189 (249)
.++.+.+.+..++.|++.+...+...+++.|.+|+++|+++.++ ++....+|..++|.+++++.+..
T Consensus 307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~---------- 376 (394)
T TIGR00883 307 LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT---------- 376 (394)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc----------
Confidence 24566667778888988888889999999999999999999998 56667789999999999997432
Q ss_pred chhHHHHHHHHHHHH
Q psy6455 190 SSWNLFVTLVSVPSI 204 (249)
Q Consensus 190 ~~w~~~~~~~~~~~~ 204 (249)
..|+..++...+..+
T Consensus 377 g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 377 GDWYAIGYYLAALAL 391 (394)
T ss_pred CcchhHHHHHHHHHH
Confidence 237776666555443
No 126
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.58 E-value=1.5e-13 Score=116.46 Aligned_cols=130 Identities=21% Similarity=0.148 Sum_probs=97.4
Q ss_pred HHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy6455 47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126 (249)
Q Consensus 47 ~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~ 126 (249)
+...+|.+.++.|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+..++.
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF 329 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 34456666667788888899999999999999999999999999999999888877766555443322111112222333
Q ss_pred Hh--hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 127 GF--AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 127 G~--~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
|+ +..+..+..+.++.|.+|++.|++++|+......++..++|.+.+++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 33 222334455678899999999999999998888999999999999997
No 127
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.58 E-value=3.4e-14 Score=120.70 Aligned_cols=164 Identities=10% Similarity=-0.021 Sum_probs=124.3
Q ss_pred hccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh----cchhH-HHHHHHHHHHHHHHHHHhhhH------HHH
Q psy6455 50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKI-TLIGALLVDGLCGIASSVAQY------YGV 118 (249)
Q Consensus 50 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~------~~~ 118 (249)
..+.+.+++|+++.++|++.++..+..++..++.|+++|| +|||| .++.+....+++.+++...++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3444566799999999999999999999999999999997 68755 566777777777776665542 456
Q ss_pred HHHHHHHHHhhhccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455 119 FLALRFINGFAVTGTLGICFPYLGEFQ-PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT 197 (249)
Q Consensus 119 l~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~ 197 (249)
+++.+++.+++.+....+..++..|+. ++++|++..++.+.+..+|..+++.+.+.+...... ..+..+|++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~----~~~~~g~~~~~~ 177 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG----GDDKFGWFMFAL 177 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CcccccHHHHHH
Confidence 677788888888877778888889987 568899999998888888888877766655432100 013468999999
Q ss_pred HHHHHHHHHHHHh-hcccCCh
Q psy6455 198 LVSVPSILLALWL-TRFPESP 217 (249)
Q Consensus 198 ~~~~~~~~~~~~~-~~~~~~~ 217 (249)
+.+++.++..+.. +..+|++
T Consensus 178 i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 178 VLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHHHcCCEecC
Confidence 9888887776653 4456654
No 128
>TIGR00895 2A0115 benzoate transport.
Probab=99.56 E-value=9.5e-14 Score=116.09 Aligned_cols=137 Identities=27% Similarity=0.294 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy6455 39 YAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGV 118 (249)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 118 (249)
.............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+....+......++.....+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (398)
T TIGR00895 261 MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTL 340 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 33444445556667777889999999999999999999999999999999999995544444433333333333456667
Q ss_pred HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 175 (249)
..+..++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+++++
T Consensus 341 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 341 LLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 778888999999999999999999999999999999999999999999999998875
No 129
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.56 E-value=8.5e-14 Score=116.79 Aligned_cols=133 Identities=24% Similarity=0.310 Sum_probs=107.1
Q ss_pred HHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHH
Q psy6455 46 VLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI-ASSVAQYYGVFLALR 123 (249)
Q Consensus 46 ~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~~ 123 (249)
......|.+ .+++|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++..+..+ .....++.+.+.+..
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGL 335 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 333445554 456899999999999999999999999999999999999998888766533322 233345566666676
Q ss_pred HHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455 124 FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 124 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 178 (249)
++.|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+++.+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 390 (405)
T TIGR00891 336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR 390 (405)
T ss_pred HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777788888999999999999999999999999999999999999843
No 130
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.56 E-value=2.2e-13 Score=116.22 Aligned_cols=159 Identities=15% Similarity=0.107 Sum_probs=135.0
Q ss_pred HhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh--HHHHHHHHHHHHHHHHHHh--------hhHHH
Q psy6455 48 SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK--ITLIGALLVDGLCGIASSV--------AQYYG 117 (249)
Q Consensus 48 ~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~~~~~ 117 (249)
.....+..+++|++..+...+.....+...+|++++|++.||+|.| ++++++.++..+..+...+ .++.+
T Consensus 302 ~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~ 381 (477)
T PF11700_consen 302 SFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPW 381 (477)
T ss_pred HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHH
Confidence 3333344557999999999999999999999999999999999999 8888888877655554444 45677
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455 118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT 197 (249)
Q Consensus 118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~ 197 (249)
.+.+.-++.|+..|..++..-++.+|+.|+++.+...|++....-..+.+||++.+.+.+.. .+-|+.+.
T Consensus 382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t----------g~~r~g~~ 451 (477)
T PF11700_consen 382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT----------GSQRYGFL 451 (477)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCchhHHH
Confidence 78888899999999999999999999999999999999999999999999999999998654 45788888
Q ss_pred HHHHHHHHHHHHhhcccCC
Q psy6455 198 LVSVPSILLALWLTRFPES 216 (249)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~ 216 (249)
...++.++.++++++++.+
T Consensus 452 ~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 452 FLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHHHHHHHHHhhccch
Confidence 8888888888887776543
No 131
>PRK10504 putative transporter; Provisional
Probab=99.55 E-value=1.1e-13 Score=118.80 Aligned_cols=139 Identities=16% Similarity=0.144 Sum_probs=112.4
Q ss_pred HHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh---hHH
Q psy6455 41 AISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA---QYY 116 (249)
Q Consensus 41 ~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~ 116 (249)
...........|++.+ .+|.++.+.+++.....++..++.++.|++.||+|||+++..+.++.++...+..+. ++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (471)
T PRK10504 274 RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWY 353 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccH
Confidence 3334445556676665 488899999999999999999999999999999999999998888777776655543 334
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
+.+.+..++.|++.+...+.....+.+..|++.++.+.++.++...+|..+|+.+.+.+.+..
T Consensus 354 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 354 YLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556677888888888888899999999999999999999999999999999999886543
No 132
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.55 E-value=1.6e-13 Score=118.32 Aligned_cols=153 Identities=18% Similarity=0.115 Sum_probs=134.8
Q ss_pred HHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455 47 LSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI 125 (249)
Q Consensus 47 ~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l 125 (249)
+...+|.+.+ ++|.++...|++.+.+.+|..+|+++.+++.+|+++++.+..+.++.+++.+..++.++.+...+..++
T Consensus 237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l 316 (524)
T PF05977_consen 237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL 316 (524)
T ss_pred HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3455777664 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHH
Q psy6455 126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL 205 (249)
Q Consensus 126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 205 (249)
.|++.........+.+.+..|++.||+.++++++....+..+|..+.|.+. +..|.+..+.+.++..++
T Consensus 317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la-----------~~~g~~~al~~a~~~lll 385 (524)
T PF05977_consen 317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA-----------DHFGVRTALLIAGAALLL 385 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCHHHHHHHHHHHHHH
Confidence 999988888888999999999999999999999999999999999999997 445778888877766655
Q ss_pred HHHHh
Q psy6455 206 LALWL 210 (249)
Q Consensus 206 ~~~~~ 210 (249)
..++.
T Consensus 386 ~~~~~ 390 (524)
T PF05977_consen 386 SALIA 390 (524)
T ss_pred HHHHH
Confidence 55553
No 133
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.54 E-value=2e-13 Score=114.13 Aligned_cols=146 Identities=10% Similarity=0.010 Sum_probs=119.7
Q ss_pred ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy6455 51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAV 130 (249)
Q Consensus 51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~ 130 (249)
.|.+.++.|.+..+.+.+.+...++..+...+.|++.||+|+|+++..+.+..+++.+.....++.+.+++..++.|++.
T Consensus 228 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 307 (382)
T PRK11128 228 SAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTF 307 (382)
T ss_pred HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34444678999889999999998999999999999999999999999999998888888888889998899999999998
Q ss_pred cccccccccccccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455 131 TGTLGICFPYLGEFQPTAYREKVLCWLE-MFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209 (249)
Q Consensus 131 g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 209 (249)
+...+....++.+. +++++++..+.++ ....+|..++|.++|.+.+ ..++ ..++..+++.+++++.
T Consensus 308 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~-----------~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 308 TVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ-----------HLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccH-HHHHHHHHHHHHHHHH
Confidence 88888888888887 5566788888875 5567888999999999984 3455 4566666666555444
No 134
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.54 E-value=1.3e-13 Score=113.85 Aligned_cols=129 Identities=22% Similarity=0.220 Sum_probs=115.1
Q ss_pred hhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Q psy6455 49 FVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY-YGVFLALRFIN 126 (249)
Q Consensus 49 ~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~~l~ 126 (249)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++.....+.++ .+.+.+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 556776665 8999999999999999999999999999999999999999888777777777777664 77888889999
Q ss_pred HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
|++.+...+...+++.|..|+++|++..++.+....++..++|.+++.+.+
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998899999999999999999999999999999999999999998863
No 135
>KOG2325|consensus
Probab=99.54 E-value=5.3e-14 Score=117.93 Aligned_cols=197 Identities=17% Similarity=0.193 Sum_probs=150.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch-hHHHH
Q psy6455 21 GYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCD--FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KITLI 97 (249)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-r~~~~ 97 (249)
.-++.+|+.+.+..+..+.......++.+..-.+.++ .+.+.+..|++.++..++.+++++..|+.+.|.+. |+.++
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli 106 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI 106 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH
Confidence 3456678888888888888888877777666555566 66777889999999999999999999999999997 88999
Q ss_pred HHHHHHHHHHHHH-Hhh---h-HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 98 GALLVDGLCGIAS-SVA---Q-YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA 172 (249)
Q Consensus 98 ~~~~~~~i~~~~~-~~~---~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 172 (249)
.+.++.+++.++. .+. + ..+.++++|++.|+|.| ..+..-+|+++....++|.++++..+.+..+|.++||.+.
T Consensus 107 ~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q 185 (488)
T KOG2325|consen 107 VSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQ 185 (488)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence 9999999999887 332 3 57889999999999865 4677889999988889999999999999999999999998
Q ss_pred HHHhccccccc--CcccccchhHHHHHHHHHHHHHHHHHh-hcccCChh
Q psy6455 173 WLLIPLNLRIE--TPYFLYSSWNLFVTLVSVPSILLALWL-TRFPESPK 218 (249)
Q Consensus 173 ~~l~~~~~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~ 218 (249)
..+.....+.. .......-+..+-++.+++.++.++++ ++++|..+
T Consensus 186 ~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 186 LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 88875553221 000111223445566666666666653 34566543
No 136
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.54 E-value=7.1e-13 Score=108.78 Aligned_cols=162 Identities=20% Similarity=0.146 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-hHH
Q psy6455 38 AYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QYY 116 (249)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~ 116 (249)
+..+..+..+.++-|.+.+..|.|.+..+++...+.++..+|+.+.|+++|| +.|+.+.....+.++..+...+. ++.
T Consensus 222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~ 300 (394)
T COG2814 222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP 300 (394)
T ss_pred HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH
Confidence 3344455666777888888899999999999999999999999999999999 99999888877777777666554 456
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455 117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV 196 (249)
Q Consensus 117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~ 196 (249)
+..++.-++.|+..+.........+++ ..++.+..+.+++...+++|..+|..+++.+. ++.|+....
T Consensus 301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~-----------~~~g~~~~~ 368 (394)
T COG2814 301 ALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVL-----------DALGYAATG 368 (394)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhchHHHH
Confidence 666677777888877777777777777 44688999999999999999999999999998 557999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy6455 197 TLVSVPSILLALWLTR 212 (249)
Q Consensus 197 ~~~~~~~~~~~~~~~~ 212 (249)
++.+++.+++.++.+.
T Consensus 369 ~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 369 WVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888887654
No 137
>TIGR00898 2A0119 cation transport protein.
Probab=99.53 E-value=3.9e-13 Score=116.41 Aligned_cols=148 Identities=19% Similarity=0.151 Sum_probs=114.7
Q ss_pred cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhhhc
Q psy6455 54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY--GVFLALRFINGFAVT 131 (249)
Q Consensus 54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~~~l~G~~~g 131 (249)
..++++.+. .+......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+..++.+++.+
T Consensus 349 ~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (505)
T TIGR00898 349 DLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGIT 425 (505)
T ss_pred cccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 334444442 334445566778889999999999999999999998888887777665532 444555566677777
Q ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Q psy6455 132 GTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLT 211 (249)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 211 (249)
..++..+.+.+|.+|++.|++++++.+....+|.+++|.+.+ +. ..++...+.+.++..++..+..+
T Consensus 426 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 426 SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG------------EKWLFLPLVLFGGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH------------HHHHhhHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999999999999999999988 42 24566778888888888877777
Q ss_pred cccCCh
Q psy6455 212 RFPESP 217 (249)
Q Consensus 212 ~~~~~~ 217 (249)
++||+.
T Consensus 493 ~lpet~ 498 (505)
T TIGR00898 493 FLPETK 498 (505)
T ss_pred cCcCCC
Confidence 888864
No 138
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.53 E-value=3.6e-13 Score=114.49 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=106.9
Q ss_pred HHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHH
Q psy6455 45 TVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QYYGVFLAL 122 (249)
Q Consensus 45 ~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~ 122 (249)
.......+.+.++ ++ +....+++.+...++..++.+++++++||+|+|+++.++.++.+++.+...+. ++.+.+++.
T Consensus 239 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T TIGR00792 239 NIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVL 317 (437)
T ss_pred HHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHH
Confidence 3333344555443 44 55667788888899999999999999999999999999988888877766554 356666777
Q ss_pred HHHHHhhhcccccccccccccccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQP-------TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
.++.|++.+...+...++++|..+ ++.+|...++++....+|..+++.+.+.+.+..
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 318 IILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888899988888888899988865 456799999999999999999999999987543
No 139
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.53 E-value=2.1e-13 Score=116.54 Aligned_cols=162 Identities=14% Similarity=0.075 Sum_probs=109.5
Q ss_pred HHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc--chhHHH-HHHHHHHHHHHHHHHh--hh
Q psy6455 41 AISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ--GRKITL-IGALLVDGLCGIASSV--AQ 114 (249)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~--Grr~~~-~~~~~~~~i~~~~~~~--~~ 114 (249)
....+....++|.+.++ .|.+..+.+++...+.++..++.++.|+++||+ +||+.. +....+..++.+...+ ..
T Consensus 266 ~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~ 345 (452)
T PRK11273 266 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAG 345 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 33344455667776554 788888999999999999999999999999999 555432 2222223333222222 22
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHhcccccccCcccccchhH
Q psy6455 115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGII-VLPAVAWLLIPLNLRIETPYFLYSSWN 193 (249)
Q Consensus 115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~l~~~~~~~~~~~~~~~~w~ 193 (249)
+.+...+..++.|.+..........+..|.+|++.|+++.++.+....+|+. .+|.+.+.+. +..||+
T Consensus 346 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~-----------~~~g~~ 414 (452)
T PRK11273 346 NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV-----------DFFGWD 414 (452)
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH-----------HHhcch
Confidence 3444444555555543332233345677999999999999999888777765 4799999987 445899
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy6455 194 LFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~ 213 (249)
..|.+.++.++++++....+
T Consensus 415 ~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 415 GGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99988888877776665443
No 140
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.53 E-value=3.5e-13 Score=113.97 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=110.6
Q ss_pred HHHHHH-HhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch-hHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455 42 ISITVL-SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KITLIGALLVDGLCGIASSVAQYYGVF 119 (249)
Q Consensus 42 ~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~~l 119 (249)
.....+ ++..+.+.+++|++..+.|++.+.+.++..++++++|+++||+|| |+++.++.++..++..+..+.++++.+
T Consensus 16 ~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (418)
T TIGR00889 16 FIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGM 95 (418)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 334444 444455667799999999999999999999999999999999965 778888888888888888888889989
Q ss_pred HHHHHHHHhhhccccccccccc----c----cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455 120 LALRFINGFAVTGTLGICFPYL----G----EFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS 191 (249)
Q Consensus 120 ~~~~~l~G~~~g~~~~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~ 191 (249)
.+.|++.|++.+...+...+.. . |......|.+..+ .+|.+++|.+++.+. ....
T Consensus 96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~-----------~~~~ 158 (418)
T TIGR00889 96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD-----------IELS 158 (418)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc-----------ccch
Confidence 9999999987665555444332 1 2222223333333 367788888887762 1124
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455 192 WNLFVTLVSVPSILLALWLTRFPESP 217 (249)
Q Consensus 192 w~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
|. +|++.++..++..+..+++||+|
T Consensus 159 ~~-~f~~~~~~~~~~~~~~~~~~e~~ 183 (418)
T TIGR00889 159 NI-QLYITAGSSALLGVFALTLPDIP 183 (418)
T ss_pred hH-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 54 35555555555555556678765
No 141
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.52 E-value=3.7e-13 Score=114.47 Aligned_cols=160 Identities=15% Similarity=0.045 Sum_probs=109.5
Q ss_pred HHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc--chhHHH-HH---HHHHHHHHHHHHHhh
Q psy6455 41 AISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ--GRKITL-IG---ALLVDGLCGIASSVA 113 (249)
Q Consensus 41 ~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~--Grr~~~-~~---~~~~~~i~~~~~~~~ 113 (249)
..........+|.+. +++|.+..+.++..+.+.++..++.++.|+++||+ ++|+.. .. +.++..++..... .
T Consensus 256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~ 334 (434)
T PRK11663 256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-F 334 (434)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-c
Confidence 333444555666655 56899999999999999999999999999999999 333222 22 2121221111111 2
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455 114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN 193 (249)
Q Consensus 114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~ 193 (249)
.+.....+..+..|++...........+.|.+|+++|++++++.+....+|..++|.+.+++. +..+|+
T Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~-----------~~~g~~ 403 (434)
T PRK11663 335 ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL-----------EIWHWT 403 (434)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH-----------HhcccH
Confidence 233333344444555433223333456789999999999999999999999999999999997 445899
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy6455 194 LFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~ 212 (249)
..|++.+++.++..+....
T Consensus 404 ~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 404 GFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998888777665543
No 142
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.51 E-value=8.6e-13 Score=113.80 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=117.6
Q ss_pred ccccccccCCCCcchhhHHH-HhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH---Hhh-hHHHHHHHHHHH
Q psy6455 51 LPSAQCDFGMTSSDKGWLNA-APMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS---SVA-QYYGVFLALRFI 125 (249)
Q Consensus 51 ~~~~~~~~~~s~~~~~~~~~-~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~~~l 125 (249)
.|.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.++++.++.+++.+.. ... ++.+.+.+..++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34445678999999999874 5668999999999999999999998777666555543322 222 344444555566
Q ss_pred HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHH
Q psy6455 126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL 205 (249)
Q Consensus 126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 205 (249)
..++.|...+...++..+..+++.+++..++.+....+|..+++.+.+++. +..||+..|.+.+++.++
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~-----------~~~G~~~~f~~~~~~~l~ 394 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFV-----------EAHGWPTFYLFSVAAAVP 394 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhChHHHHHHHHHHHHH
Confidence 555555555666788889999999999999999999999998888899987 445899999999988888
Q ss_pred HHHHhhcccCC
Q psy6455 206 LALWLTRFPES 216 (249)
Q Consensus 206 ~~~~~~~~~~~ 216 (249)
+.+...+++++
T Consensus 395 ~l~~~~~~~~~ 405 (491)
T PRK11010 395 GLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHhc
Confidence 87776665543
No 143
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.51 E-value=8.3e-13 Score=110.74 Aligned_cols=175 Identities=15% Similarity=-0.015 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhH--HHHhHHHHHHHHHHHHh-hhhhcchhHHHHHHHHHH-HH
Q psy6455 30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWL--NAAPMLGMVFGSYFWGC-LADTQGRKITLIGALLVD-GL 105 (249)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~i~~~i~~~~~g~-l~dr~Grr~~~~~~~~~~-~i 105 (249)
+..+...++.++.......+.+|.+.++.|.|.+++|+. .+...+...+.+++++. .+||+||||.+++...+. .+
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 445566778889999999999999999999999999997 46668888888988854 799999999876655332 22
Q ss_pred HHHHHH---hhhH-HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455 106 CGIASS---VAQY-YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR 181 (249)
Q Consensus 106 ~~~~~~---~~~~-~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 181 (249)
...... ...+ ...++...++.++..+...+....+..|..++++++...+....+..+|..+++.+.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~----- 157 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF----- 157 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 222222 1222 3333444455556666666677778888888888888888888888999999998888876
Q ss_pred ccCcccccchhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455 182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPE 215 (249)
Q Consensus 182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
+..+||..|++.+++.++..+..++.+|
T Consensus 158 ------~~~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 158 ------GKFGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred ------HHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4469999999999888777666555544
No 144
>PRK15075 citrate-proton symporter; Provisional
Probab=99.51 E-value=7.1e-13 Score=112.75 Aligned_cols=139 Identities=18% Similarity=0.147 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH-HH---hhh
Q psy6455 40 AAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA-SS---VAQ 114 (249)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~---~~~ 114 (249)
..........+.|.+.++ +|.+..+.+++...+.++..++.+++|+++||+|||++++.+.++..+..+. .. ..+
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP 329 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344455566667776554 8999888999999999999999999999999999999888765544332211 11 123
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Q psy6455 115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWL-EMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~l~~~ 178 (249)
+.....+..++.|++.+...+....++.|.+|++.|+++.++. +.+..+++.++|.+.+++.+.
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3333444455566666666666678899999999999999985 445555678899999988743
No 145
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.51 E-value=5.8e-13 Score=111.90 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=117.7
Q ss_pred CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccc
Q psy6455 59 GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICF 138 (249)
Q Consensus 59 ~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~ 138 (249)
+.+....+.+.+...+...++.++.|++.||+|+|+.+.++.++.++...+....++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888899999999999999999999999999888888777767788888888889999998766666666
Q ss_pred cccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455 139 PYLGEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209 (249)
Q Consensus 139 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 209 (249)
.+..+..+++.+++..+. ++....+|..+++.+++++. +..||+..|.+.+++.++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~-----------~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY-----------DSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH-----------HhcccHHHHHHHHHHHHHHHHH
Confidence 778888888888887776 67889999999999999998 4458999999988888777665
No 146
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.50 E-value=4.4e-13 Score=115.27 Aligned_cols=152 Identities=16% Similarity=0.082 Sum_probs=106.1
Q ss_pred hccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh-------HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6455 50 VLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK-------ITLIGALLVDGLCGIASSVAQYYGVFLA 121 (249)
Q Consensus 50 ~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 121 (249)
.+|. +.+++|.+..+.+.+.+.+.++..++.+++|+++||+||| ....+..++..+..++....++.+..++
T Consensus 274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 353 (476)
T PLN00028 274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIV 353 (476)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 3444 3456899999999999999999999999999999999876 2333333333333344444555555555
Q ss_pred HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455 122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV 201 (249)
Q Consensus 122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~ 201 (249)
..++.+++.+...+...+++.+..| ++|+...++.+.+..+|+.+++.+.+ .. +..+|+..|++.++
T Consensus 354 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~----~~--------~~~~y~~~f~~~~~ 420 (476)
T PLN00028 354 VMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF----TG--------SSYSTETGISLMGV 420 (476)
T ss_pred HHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH----hc--------CCccHhhHHHHHHH
Confidence 5666666655555666667777654 68999999987766677766665533 11 23579999999988
Q ss_pred HHHHHHHHhhccc
Q psy6455 202 PSILLALWLTRFP 214 (249)
Q Consensus 202 ~~~~~~~~~~~~~ 214 (249)
+.+++.++.++.+
T Consensus 421 ~~~i~~~~~~~~~ 433 (476)
T PLN00028 421 MIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHHhee
Confidence 8888877766654
No 147
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.50 E-value=3.3e-13 Score=107.98 Aligned_cols=171 Identities=16% Similarity=0.082 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455 30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA 109 (249)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 109 (249)
+..+.+..+--=-....+.+.++.+.+++|+|.+.+|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++
T Consensus 14 i~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i 93 (395)
T COG2807 14 LAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI 93 (395)
T ss_pred HHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333333334566788999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455 110 SSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY 189 (249)
Q Consensus 110 ~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~ 189 (249)
-... +...++.+..+.|.+.+......+..+.+.+| ++-+..+++|++..++|+.+++.+.-.+.+..
T Consensus 94 R~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~---------- 161 (395)
T COG2807 94 RSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS---------- 161 (395)
T ss_pred Hhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh----------
Confidence 8776 77788999999999999999999999999998 45799999999999999999998888886332
Q ss_pred chhHHHHHHHHHHHHHHHHHhhc
Q psy6455 190 SSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 190 ~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
.+||....+-+.+++++.+.++.
T Consensus 162 ~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 162 GGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999888887554
No 148
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.49 E-value=9.8e-13 Score=111.80 Aligned_cols=160 Identities=13% Similarity=-0.002 Sum_probs=102.4
Q ss_pred HHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH--h--hhHHHH
Q psy6455 44 ITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS--V--AQYYGV 118 (249)
Q Consensus 44 ~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~~~~~~ 118 (249)
.+....++|.+. +++|.+..+.++..+...++..+++++.|+++||+|||+.++++.++.++...... . .++...
T Consensus 259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (432)
T PRK10406 259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYA 338 (432)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 344455566654 56888888888888888888899999999999999999988776655433332211 1 122222
Q ss_pred HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455 119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMF-WTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT 197 (249)
Q Consensus 119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~ 197 (249)
.+....+.+++.+...+....+++|++|++.|++++|+.+.. ..+.+...|.+.+.+.. ...|...++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-----------~g~~~~~~~ 407 (432)
T PRK10406 339 AFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-----------IGMETAFFW 407 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-----------hCCCcHHHH
Confidence 222222222333333455667889999999999999996654 44445557787776531 123555666
Q ss_pred HHHHHHHHHHHHhhccc
Q psy6455 198 LVSVPSILLALWLTRFP 214 (249)
Q Consensus 198 ~~~~~~~~~~~~~~~~~ 214 (249)
+.++..++..+..++++
T Consensus 408 ~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 408 YVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66666666666555443
No 149
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.48 E-value=1.1e-12 Score=109.97 Aligned_cols=149 Identities=14% Similarity=-0.022 Sum_probs=111.0
Q ss_pred hccccccccCCCCcchhhHHHHhH-HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh------hhHHHHHHHH
Q psy6455 50 VLPSAQCDFGMTSSDKGWLNAAPM-LGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV------AQYYGVFLAL 122 (249)
Q Consensus 50 ~~~~~~~~~~~s~~~~~~~~~~~~-i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~l~~~ 122 (249)
+.+.+.+|.|.++++.+++..... +...++.++.|++.||+|+|+.+..+.++..+..+.... .++...+...
T Consensus 230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 344555678999999999888775 466778899999999999999988877665333222211 1223333444
Q ss_pred HHHHHhhhccccccccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPT-AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV 201 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~ 201 (249)
..+.+++.+...+...+.+.+..++ +++++.+++.+....+|..++|.+++.+. +..|++..|...++
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~-----------~~~G~~~~f~~~~~ 378 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT-----------DRFGYAGGFLSGTV 378 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHccHHHHHHHHH
Confidence 4555666677777777777777766 88999999999999999999999999997 44588888888877
Q ss_pred HHHHHHHH
Q psy6455 202 PSILLALW 209 (249)
Q Consensus 202 ~~~~~~~~ 209 (249)
+.++..+.
T Consensus 379 ~~l~a~~~ 386 (390)
T TIGR02718 379 LAVLAILL 386 (390)
T ss_pred HHHHHHHH
Confidence 77666554
No 150
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.45 E-value=4.1e-12 Score=107.08 Aligned_cols=129 Identities=11% Similarity=-0.048 Sum_probs=102.3
Q ss_pred Hhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-----hHHHHHHH
Q psy6455 48 SFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-----QYYGVFLA 121 (249)
Q Consensus 48 ~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~ 121 (249)
....|.+ .+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+. .+.+.+++
T Consensus 235 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 314 (406)
T PRK15402 235 IALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTA 314 (406)
T ss_pred HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence 3334544 45689998888988888888899999999999999999999998888777776665543 24566677
Q ss_pred HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
..++.|++.+...+........ .++++|++..+..+....+|..+|+.+.+.+.+
T Consensus 315 ~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 315 GLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888999888777666555443 345889999999999999999999999999863
No 151
>PRK09848 glucuronide transporter; Provisional
Probab=99.44 E-value=1.4e-11 Score=105.27 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=105.0
Q ss_pred HHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh--HHHHHH
Q psy6455 44 ITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ--YYGVFL 120 (249)
Q Consensus 44 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~ 120 (249)
........|++.++ +|.++...++......++..++.++++++.||+|+|+.+.++.++.+++.+...+.+ +.+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 323 (448)
T PRK09848 244 TFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVAL 323 (448)
T ss_pred HHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 33444456665544 776655555555555677888999999999999999999999988888777666543 566677
Q ss_pred HHHHHHHhhhcccccccccccccccccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455 121 ALRFINGFAVTGTLGICFPYLGEFQPTA-------YREKVLCWLEMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 121 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 178 (249)
+..++.|+|.+...+...++.+|..|.+ ++|...++++....+|..+++.+.+.+.+.
T Consensus 324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999988754 358889999999999999999998887644
No 152
>KOG0569|consensus
Probab=99.43 E-value=1.1e-11 Score=104.63 Aligned_cols=180 Identities=16% Similarity=0.073 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455 27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 106 (249)
+...+.+.+....+.-....+..+...+.++-|++..++.+++....+...+.++++..+.||+|||+.++.+..+..+.
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 34333333333434444455566667788889999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhh---H-H--H---HHHHHHHHHHhhhccc-ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 107 GIASSVAQ---Y-Y--G---VFLALRFINGFAVTGT-LGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 107 ~~~~~~~~---~-~--~---~l~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
.+++.... + . | ..+++.++..++.+.. -|..+-+.+|++|++.|..++++......+...+-.+.-..+.
T Consensus 349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~ 428 (485)
T KOG0569|consen 349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ 428 (485)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665431 1 1 1 2344455554444433 5777789999999999999999988887777777666655554
Q ss_pred cccccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455 177 PLNLRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 177 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
+. .|- +.|+...++..+..+. +..+||++.
T Consensus 429 ~~-----------~g~-~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 429 NV-----------IGP-YVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred HH-----------hcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 22 232 5666666666666555 555899853
No 153
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.42 E-value=4.1e-12 Score=106.95 Aligned_cols=155 Identities=12% Similarity=0.011 Sum_probs=115.7
Q ss_pred HhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy6455 48 SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD-TQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126 (249)
Q Consensus 48 ~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~ 126 (249)
...+|.+.++.+.++.+.+++.+...++..++..+.+++.| |++.++.+..+.++..++.++..+.++.+.+.+..++.
T Consensus 228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 307 (400)
T PRK11646 228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLF 307 (400)
T ss_pred HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34567766665557788888888877777666666666665 56767777788888888877777788887777777888
Q ss_pred HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL 206 (249)
Q Consensus 127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 206 (249)
|++.+...+...+++.|..|+++|++..++.+....+|..+||.+++++.+... ........+...++..++.
T Consensus 308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~-------~~~~~~~~~~~~~~~~~~~ 380 (400)
T PRK11646 308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK-------ALNQPELPWMMLGIIGLIT 380 (400)
T ss_pred HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh-------hcCCcchHHHHHHHHHHHH
Confidence 888888888889999999999999999999999999999999999999975430 0011234455555555555
Q ss_pred HHH
Q psy6455 207 ALW 209 (249)
Q Consensus 207 ~~~ 209 (249)
.+.
T Consensus 381 ~~~ 383 (400)
T PRK11646 381 LLA 383 (400)
T ss_pred HHH
Confidence 444
No 154
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.42 E-value=4.8e-12 Score=106.58 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=104.8
Q ss_pred cccccccCCCCcchhhHHHHhH-HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH---Hhh-hHHHHHHHHH---
Q psy6455 52 PSAQCDFGMTSSDKGWLNAAPM-LGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS---SVA-QYYGVFLALR--- 123 (249)
Q Consensus 52 ~~~~~~~~~s~~~~~~~~~~~~-i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~~--- 123 (249)
+.+.+++|.++++.+++..... ++..++.+++|++.||+|+|+.+..+.++..+..+.. ++. ++.+.+.+..
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3455678999999999886654 5688999999999999999998877776665554332 333 3455555444
Q ss_pred -HHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHH
Q psy6455 124 -FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVP 202 (249)
Q Consensus 124 -~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~ 202 (249)
+..|++.+...+....++.+.+|.+++ ++++....++..+++.+++.+. +..||+..|.+.+++
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~-----------~~~G~~~~f~~~~~~ 378 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLV-----------EAYGWPGFYLMTVVI 378 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHH-----------HHhChHHHHHHHHHH
Confidence 345666666677777788888776554 4455455667766667888887 557999999999888
Q ss_pred HHHHHHHhhcc
Q psy6455 203 SILLALWLTRF 213 (249)
Q Consensus 203 ~~~~~~~~~~~ 213 (249)
+++..++....
T Consensus 379 ~~~~~~~~~~~ 389 (402)
T PRK11902 379 ALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHH
Confidence 88876665444
No 155
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.42 E-value=3.1e-12 Score=108.13 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccc--CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHH-HHHHHHHHHHHHHH
Q psy6455 33 GGLLYAYAAISITVLSFVLPSAQCDF--GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT-LIGALLVDGLCGIA 109 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~-~~~~~~~~~i~~~~ 109 (249)
..+.+++.......+...+|.+.+++ +.+..+.+++.....++..++.+++|+++||+++|+. .+...++..++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~ 326 (412)
T TIGR02332 247 YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL 326 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH
Confidence 33444444455556667788877764 5677788999999999999999999999999997774 33444344433322
Q ss_pred HHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455 110 SSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY 189 (249)
Q Consensus 110 ~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~ 189 (249)
....++.....++-++.+++.....+.......|.+|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~---------- 396 (412)
T TIGR02332 327 ASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDAT---------- 396 (412)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccC----------
Confidence 2222222222222223333333333444566678899999999999999999999999999998887432
Q ss_pred chhHHHHHHHHHHH
Q psy6455 190 SSWNLFVTLVSVPS 203 (249)
Q Consensus 190 ~~w~~~~~~~~~~~ 203 (249)
.+|++.+.+.++..
T Consensus 397 g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 397 GSFNSGLWFVAALL 410 (412)
T ss_pred CCCchhHHHHHHHH
Confidence 35888887766544
No 156
>PRK10054 putative transporter; Provisional
Probab=99.42 E-value=4.1e-12 Score=106.78 Aligned_cols=142 Identities=7% Similarity=-0.061 Sum_probs=112.4
Q ss_pred cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhcccc
Q psy6455 56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QYYGVFLALRFINGFAVTGTL 134 (249)
Q Consensus 56 ~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~~~l~G~~~g~~~ 134 (249)
.+.+.+....+++.....+.....+++.|++.||+++|+.+..+.++..++.....+. ++.+.+.+..++.|++.+...
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677888888888778888999999999999999999988888877666654 567767778889999988878
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455 135 GICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209 (249)
Q Consensus 135 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 209 (249)
+.....+.+..|++.|++..+..+ ...+|..+||.+++.+. +..+....|++.+....+..+.
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~-----------~~~g~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL-----------TTLPPWSLFVILALAIVAAWLL 379 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH-----------HHcChhhHHHHHHHHHHHHHHH
Confidence 888889999999999999988765 45589999999999998 4456667777665555444444
No 157
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.42 E-value=7e-12 Score=103.93 Aligned_cols=167 Identities=15% Similarity=0.131 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy6455 38 AYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYG 117 (249)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 117 (249)
....++.. ...+...+.++-+.+....|.+.+...+.-++...+..++.+|+|.|+.++++.++.++=.++++++++.+
T Consensus 235 ~Y~vfdqq-f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~ 313 (412)
T PF01306_consen 235 IYDVFDQQ-FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPW 313 (412)
T ss_dssp HHHHHHHH-HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHH
T ss_pred HHHHHHHH-HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchH
Confidence 33444433 33333334445555566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455 118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV 196 (249)
Q Consensus 118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~ 196 (249)
.+.+.+.+.|+-.+........|+++.+|+|..++...+ ++....+|..+.+.++|.+. |+.|.+..|
T Consensus 314 ~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly-----------d~~G~~~ty 382 (412)
T PF01306_consen 314 VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY-----------DRIGFQHTY 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH-----------hhcCcHHHH
Confidence 999999999999999999999999999999998888888 57889999999999999998 667999999
Q ss_pred HHHHHHHHHHHHH-hhcccCC
Q psy6455 197 TLVSVPSILLALW-LTRFPES 216 (249)
Q Consensus 197 ~~~~~~~~~~~~~-~~~~~~~ 216 (249)
++.+.+.++..+. .+.++++
T Consensus 383 limg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 383 LIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHHHHheeeecCC
Confidence 9888887777666 4445543
No 158
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.42 E-value=5.1e-12 Score=119.50 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=121.7
Q ss_pred Hhhccc-cccccCCCCc-chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455 48 SFVLPS-AQCDFGMTSS-DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI 125 (249)
Q Consensus 48 ~~~~~~-~~~~~~~s~~-~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l 125 (249)
...+|. +.+.+|.+.. ..+++.+...++..+++++.|+++||+++++.+.++.++.+++.++..+..+.+.+++..++
T Consensus 252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1146)
T PRK08633 252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL 331 (1146)
T ss_pred HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334444 4456899988 89999999999999999999999999999999988888888888888777888888888999
Q ss_pred HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHH
Q psy6455 126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL 205 (249)
Q Consensus 126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 205 (249)
.|++.+...+...+++.+..|++.|++++++.++...+|.++++.+++.+.... .++...+++.+.+.++
T Consensus 332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG----------LSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHHH
Confidence 999999888888999999999999999999999999999988888877764211 3455556555554443
Q ss_pred H
Q psy6455 206 L 206 (249)
Q Consensus 206 ~ 206 (249)
.
T Consensus 402 ~ 402 (1146)
T PRK08633 402 G 402 (1146)
T ss_pred H
Confidence 3
No 159
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.41 E-value=1.8e-11 Score=102.86 Aligned_cols=147 Identities=10% Similarity=-0.091 Sum_probs=112.9
Q ss_pred hccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy6455 50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129 (249)
Q Consensus 50 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~ 129 (249)
..|.+.+++|.+..+.+++...+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++
T Consensus 239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~ 318 (394)
T PRK10213 239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLT 318 (394)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34666778899999999999999999999999999999996544444433333444444445566777778888999999
Q ss_pred hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455 130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL 208 (249)
Q Consensus 130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 208 (249)
.+...+...+++.+..| +++++..+.......+|..+|+.+++++. +..|++..+...+++.++..+
T Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~-----------~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 319 FALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYAL-----------DNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccChhhHHHHHHHHHHHHHH
Confidence 98888888888998887 55677788888888999999999999998 445777777777665544443
No 160
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.41 E-value=8.5e-12 Score=101.37 Aligned_cols=154 Identities=12% Similarity=0.026 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc---ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455 33 GGLLYAYAAISITVLSFVLPSAQC---DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA 109 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 109 (249)
..+..++.......+..+.+.+.+ .+|+++.+.++..+.+..+..+|.++.+++.||+|+|+.+.++.++.+++.++
T Consensus 145 ~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l 224 (310)
T TIGR01272 145 GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIG 224 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 333444433334444444555443 36899999999999999999999999999999999999998888888877765
Q ss_pred HHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455 110 SSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY 189 (249)
Q Consensus 110 ~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~ 189 (249)
....++... ....++.|++.+..+|...+...+..|++ .+.+.++. ....+|+.+.|.+.|.+. |.
T Consensus 225 ~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~la-----------d~ 290 (310)
T TIGR01272 225 AALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLA-----------DC 290 (310)
T ss_pred HHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHH-----------Hh
Confidence 555444332 34556889999999999999888888754 45666665 456689999999999987 33
Q ss_pred chhHHHHHHHH
Q psy6455 190 SSWNLFVTLVS 200 (249)
Q Consensus 190 ~~w~~~~~~~~ 200 (249)
.+.+..+++..
T Consensus 291 ~g~~~a~~v~~ 301 (310)
T TIGR01272 291 LGIQLAFALPV 301 (310)
T ss_pred ccchHHHHHHH
Confidence 46677766443
No 161
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.40 E-value=1.9e-11 Score=102.33 Aligned_cols=150 Identities=13% Similarity=0.020 Sum_probs=108.5
Q ss_pred ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhh
Q psy6455 51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV-AQYYGVFLALRFINGFA 129 (249)
Q Consensus 51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~l~G~~ 129 (249)
.|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.+++
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 302 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG 302 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555568999999999999999999999999999999999999999888887777655543 44555555566666665
Q ss_pred hcccccccc-cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455 130 VTGTLGICF-PYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL 208 (249)
Q Consensus 130 ~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 208 (249)
.....+... ....+..+++.++.+ ..+....+|..+||.+++++.+.. .+|++.+.+.++..++...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~----------~~~~~~~~~~~~~~~~~~~ 370 (382)
T PRK10091 303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG----------LAYNYVALPAALLSFAAMS 370 (382)
T ss_pred HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc----------cCcchHHHHHHHHHHHHHH
Confidence 544444333 334444444555544 346677899999999999987432 5788888888777766655
Q ss_pred Hhhc
Q psy6455 209 WLTR 212 (249)
Q Consensus 209 ~~~~ 212 (249)
....
T Consensus 371 ~~~~ 374 (382)
T PRK10091 371 SLLL 374 (382)
T ss_pred HHHH
Confidence 5443
No 162
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.39 E-value=2.5e-12 Score=105.05 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=132.7
Q ss_pred ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccc
Q psy6455 55 QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTL 134 (249)
Q Consensus 55 ~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~ 134 (249)
..++|++..+..++....++..++|++++|+|.||+|-|+++..+.++..+.++...+......+.+.-++.|...|..+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 34899999999999999999999999999999999999999999999888877766665555555666788999999999
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455 135 GICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFP 214 (249)
Q Consensus 135 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
+..-++.+++.|+++-++..|+++.....++.+||.+.+.+.+.. .+-|..+....++.++..+.+.++|
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT----------g~~r~g~~~i~vll~iGl~~L~~v~ 429 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT----------GSSRAGVLSIIVLLLIGLLLLLRVK 429 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh----------cchhhHHHHHHHHHHhhHhhEEeec
Confidence 999999999999999999999999999999999999999998765 4567777777788888877777776
Q ss_pred CC
Q psy6455 215 ES 216 (249)
Q Consensus 215 ~~ 216 (249)
++
T Consensus 430 ~~ 431 (438)
T COG2270 430 VP 431 (438)
T ss_pred CC
Confidence 54
No 163
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.39 E-value=3.2e-11 Score=100.58 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=96.6
Q ss_pred HHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-----hHHHHH
Q psy6455 46 VLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-----QYYGVF 119 (249)
Q Consensus 46 ~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~l 119 (249)
......|.+. +++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++..++... ++...+
T Consensus 224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (385)
T TIGR00710 224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMI 303 (385)
T ss_pred HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3344456544 4689999999999999999999999999999999999999888877777766555443 234445
Q ss_pred HHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHH-HHHHHHHHHH
Q psy6455 120 LALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWT-GGIIVLPAVA 172 (249)
Q Consensus 120 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~l~ 172 (249)
....++.|++.+...+.......|..| ++|+++.++.+.... .|.+.++.++
T Consensus 304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888888888886 678999999876654 4555556554
No 164
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.39 E-value=9.6e-12 Score=104.19 Aligned_cols=170 Identities=14% Similarity=0.111 Sum_probs=128.8
Q ss_pred HHHHHHHHhhccccccccC-CCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-hHHHH
Q psy6455 41 AISITVLSFVLPSAQCDFG-MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QYYGV 118 (249)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~ 118 (249)
+........+.+.+.++.| .+....+.+.+...++=.+.-.+.+++..|+|.|++++++.+..++=..+.+.. ++.+.
T Consensus 220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~ 299 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPF 299 (400)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3334444444555566766 677777887788788888888999999999999999999999999988888877 44443
Q ss_pred HH----HHHHHHHhhhcccccccccccccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455 119 FL----ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEM-FWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN 193 (249)
Q Consensus 119 l~----~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~ 193 (249)
.. +...+.|++.+........++.+..|++.|++++++++. ..++|..+|..++|++.+..+.. ....|.
T Consensus 300 ~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~-----~~~~~~ 374 (400)
T PF03825_consen 300 IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR-----GMFDWS 374 (400)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch-----hhhhHH
Confidence 33 334569999999999999999999999999999999775 57899999999999998654211 123466
Q ss_pred HHHHHHHHHHHHHHHHh-hcccC
Q psy6455 194 LFVTLVSVPSILLALWL-TRFPE 215 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-~~~~~ 215 (249)
..+.+.+++.++..++. ++++|
T Consensus 375 ~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 375 AVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC
Confidence 67777777666665553 33444
No 165
>KOG2504|consensus
Probab=99.39 E-value=1.2e-12 Score=112.31 Aligned_cols=176 Identities=21% Similarity=0.264 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHHH
Q psy6455 29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG--RKITLIGALLVDGLC 106 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~ 106 (249)
.++...+...+..........++|.+.++.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..++.++.+++
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA 378 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence 344555555556666777778888888999999999999999999999999999999999988 455777788888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455 107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186 (249)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 186 (249)
...++++++++.++..-.+.|++.|.........+.|+.+.++-..+.|+.....+++..+||.+++.+.+..
T Consensus 379 ~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t------- 451 (509)
T KOG2504|consen 379 RLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT------- 451 (509)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-------
Confidence 8888999999999999999999999988888889999999999999999999999999999999999887544
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455 187 FLYSSWNLFVTLVSVPSILLALWLTRFP 214 (249)
Q Consensus 187 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
.+|...|+..++..++..++++..+
T Consensus 452 ---g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 452 ---GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ---CCeeeehhhcChHHHHHHHHHHHhH
Confidence 4588889999999888888776665
No 166
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.38 E-value=3.9e-12 Score=109.06 Aligned_cols=175 Identities=13% Similarity=0.027 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc-----hhHHHHHHHHH
Q psy6455 29 LVIFGGLLYAYAAISITVLS-FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG-----RKITLIGALLV 102 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~ 102 (249)
.+.+....++..+.. .... ...+.+.+++|+|.++.+...+...+...+-.+ +|.++||++ ||+.++++.++
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 444555567777777 4444 444556667999999999999999999988555 999999998 77777777766
Q ss_pred H-HHHHHHHHhhhHH-HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Q psy6455 103 D-GLCGIASSVAQYY-GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW---LEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 103 ~-~i~~~~~~~~~~~-~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l~~ 177 (249)
. .++....+..++. ....+..++.+++.+......-++..|..+ +++....+. ......+|..+++.+++.+.
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~- 182 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL- 182 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH-
Confidence 6 3443334433443 344447889999988888889999999998 555443333 33334589999999999987
Q ss_pred ccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455 178 LNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESP 217 (249)
Q Consensus 178 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
+..+|+..|++.+++.++..+..++++|++
T Consensus 183 ----------~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 183 ----------DKTLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred ----------HhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 445899999999888888866667778753
No 167
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.38 E-value=5.1e-12 Score=107.63 Aligned_cols=161 Identities=12% Similarity=0.049 Sum_probs=105.0
Q ss_pred HHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH---HHHHHHHh--hhHHHH
Q psy6455 45 TVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG---LCGIASSV--AQYYGV 118 (249)
Q Consensus 45 ~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~~--~~~~~~ 118 (249)
+....+.|.+.++ .|.+..+.+++...+.++..++.+++|+++||+++++....+..+.. ++.+.... ..+.+.
T Consensus 268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T TIGR00712 268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV 347 (438)
T ss_pred HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 3444556665554 78999999999999999999999999999999975432222322221 11111111 123333
Q ss_pred HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455 119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGG-IIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT 197 (249)
Q Consensus 119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~ 197 (249)
.....++.|++.............|.+|++.|+++.++.+....+| ..++|.+.+.+. +..+|...++
T Consensus 348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~-----------~~~g~~~~~~ 416 (438)
T TIGR00712 348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV-----------DFFGWDGGFM 416 (438)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH-----------HhccchHHHH
Confidence 3344455555433222222345779999999999999998777766 578999999987 4457888888
Q ss_pred HHHHHHHHHHHH-hhcccCC
Q psy6455 198 LVSVPSILLALW-LTRFPES 216 (249)
Q Consensus 198 ~~~~~~~~~~~~-~~~~~~~ 216 (249)
+.++..+++.+. ++.++|.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 417 VMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 877766666555 3334553
No 168
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.38 E-value=1.5e-10 Score=99.57 Aligned_cols=137 Identities=8% Similarity=-0.053 Sum_probs=103.3
Q ss_pred HHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh-----hhHH
Q psy6455 42 ISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV-----AQYY 116 (249)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~ 116 (249)
......+...+++.+...-+....+++.+...++..++.+++++++||+|+|+.++++.++.+++.+...+ .++.
T Consensus 245 ~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (473)
T PRK10429 245 IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNA 324 (473)
T ss_pred HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhH
Confidence 34444555556666654435566677777777889999999999999999999999888776665554432 2456
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455 117 GVFLALRFINGFAVTGTLGICFPYLGEFQP-------TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 178 (249)
+.+++..++.|++.+...+...++++|..+ .+..|...+......-+|..+++.+.+++.+.
T Consensus 325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788899988888888999999966 33346678888888999999999999888654
No 169
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.37 E-value=1.4e-11 Score=105.78 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHH--------HHHHH
Q psy6455 30 VIFGGLLYAYAAISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT--------LIGAL 100 (249)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~--------~~~~~ 100 (249)
+....+..+...........++|.+. +.+|.+..+.++..+...++..++.++.|+++||+++|+. +..+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 342 (465)
T TIGR00894 263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 34444455555555555666777765 4589999999999999999999999999999999875521 11111
Q ss_pred HHH--HHHHHHHHh-hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 101 LVD--GLCGIASSV-AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 101 ~~~--~i~~~~~~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
... .+..+.... ..+....++...+.+.+.+...+.......|..| +.+|...++.+....+|+.++|.+.+.+.+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~ 421 (465)
T TIGR00894 343 GGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS 421 (465)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence 111 111111111 2233444444555555555555555555667766 489999999999999999999999988864
Q ss_pred ccccccCcccccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455 178 LNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFP 214 (249)
Q Consensus 178 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
.. +..+|+..|.+.++..++..++....+
T Consensus 422 ~~--------~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 422 QD--------SKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred CC--------CchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 32 224699999999888888877655543
No 170
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.37 E-value=1.4e-12 Score=108.53 Aligned_cols=174 Identities=15% Similarity=0.077 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cccc----cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHH
Q psy6455 30 VIFGGLLYAYAAISITVLSFVLPS-AQCD----FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVD 103 (249)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~ 103 (249)
+..+...-+..-+.++.+...+.. +..+ +|.|++++.-+.+.|..-.-+..+++||++||+ |+|+.++.|.++.
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~ 102 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM 102 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 334445555555555555543332 3333 449988888888887777778899999999995 9999999999999
Q ss_pred HHHHHHHHhhh--HHHHHHHHHHHHHhhhcccccccccccccccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 104 GLCGIASSVAQ--YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAY--REKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 104 ~i~~~~~~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
+++-++.+... +...+.++..+.++|.|..=+....++.|.+|+++ |-.+.+++.++.++|+.++|.+.+++.
T Consensus 103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~--- 179 (498)
T COG3104 103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA--- 179 (498)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH---
Confidence 99999998874 67888999999999999999999999999998754 566777888999999999999999998
Q ss_pred ccccCcccccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455 180 LRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFP 214 (249)
Q Consensus 180 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
+..+|+..|...++-..+.++.....+
T Consensus 180 --------~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 180 --------INYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred --------HhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 556999999999998888888765544
No 171
>PRK09669 putative symporter YagG; Provisional
Probab=99.37 E-value=7e-12 Score=106.96 Aligned_cols=162 Identities=11% Similarity=0.015 Sum_probs=114.7
Q ss_pred ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh----cchhHH-HHHHHHHHHHHHHHHHhhh------HHHHH
Q psy6455 51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKIT-LIGALLVDGLCGIASSVAQ------YYGVF 119 (249)
Q Consensus 51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr----~Grr~~-~~~~~~~~~i~~~~~~~~~------~~~~l 119 (249)
..++.+++|++...+|.+.++..+..++..|+.|+++|| +||||. ++++.+..+++..+....+ ....+
T Consensus 33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 344566799999999999999999999999999999998 788655 4456666666655444333 24555
Q ss_pred HHHHHHHHhhhccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHH
Q psy6455 120 LALRFINGFAVTGTLGICFPYLGEFQ-PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTL 198 (249)
Q Consensus 120 ~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~ 198 (249)
.+..++.+.+......+..++.+|+. ++++|.+..++......+|..+++.+...+....+. .....+|+..+.+
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~----~~~~~g~~~~~~i 188 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGK----GDEQKGYFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CchhhhHHHHHHH
Confidence 66666667666667777888999988 557899988888888888888877665544322110 0123589888888
Q ss_pred HHHHHHHHHHHhhc-ccCC
Q psy6455 199 VSVPSILLALWLTR-FPES 216 (249)
Q Consensus 199 ~~~~~~~~~~~~~~-~~~~ 216 (249)
.+++.++..+..++ .+|.
T Consensus 189 ~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHhCCeEEe
Confidence 88777666554333 4443
No 172
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.37 E-value=2.8e-11 Score=101.70 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=100.8
Q ss_pred cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccc
Q psy6455 54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGT 133 (249)
Q Consensus 54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~ 133 (249)
..+.+|.++.+.|++.+...++..+++++.+++.||.++|+++..+.. ..+......+.++++...+..++.|++.+..
T Consensus 232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~ 310 (393)
T PRK11195 232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFF 310 (393)
T ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 345589999999999999999999999999999999999988887754 3444444555667777777788899988888
Q ss_pred ccccccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 134 LGICFPYLGEFQPTAY-REKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 134 ~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
.+...+.+.|..|++. +|++.++.+....++..++..+.+.+.
T Consensus 311 ~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 311 VVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred hhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8888888888766654 799999999999999999999988774
No 173
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.36 E-value=6.6e-12 Score=103.93 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=103.3
Q ss_pred HHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6455 44 ITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLCGIASSVAQYYGVFLAL 122 (249)
Q Consensus 44 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 122 (249)
......++|.+.++.|.+..+.+.+.+...++..++.++.|+++||+ +||+.+.++.++.+++...+.+.++..... .
T Consensus 213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 291 (355)
T TIGR00896 213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-W 291 (355)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence 33444556777677899999999999999999999999999999999 566677777777777766666554333222 4
Q ss_pred HHHHHhhhccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQ-PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 178 (249)
.++.|++.|...+...+.+.+.. ++++++...++.+....++..++|.+.+++.+.
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789998888887777666544 456678888988888888999999999999754
No 174
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.36 E-value=2.7e-11 Score=100.73 Aligned_cols=164 Identities=18% Similarity=0.170 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh---HHHHH-HHHHHHHHHHHH
Q psy6455 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK---ITLIG-ALLVDGLCGIAS 110 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr---~~~~~-~~~~~~i~~~~~ 110 (249)
+..++.....+.+...+|.+.++.|.+.. .+...+...+...++ .++++||.+|| +.... ..++.++.....
T Consensus 199 ~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~ 274 (368)
T TIGR00903 199 AILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLAL 274 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566678887777777754 555555555544444 47777776543 33332 333334444444
Q ss_pred HhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccc
Q psy6455 111 SVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYS 190 (249)
Q Consensus 111 ~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~ 190 (249)
.+..+....++...+.|++....++..+++.+|.+|++.|+++.++.+....+|+.++|.+.+.+. .
T Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~-------------~ 341 (368)
T TIGR00903 275 AFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI-------------S 341 (368)
T ss_pred HHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh-------------c
Confidence 444444444555566777777777778889999999999999999999999999999999888775 2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455 191 SWNLFVTLVSVPSILLALWLTRFPE 215 (249)
Q Consensus 191 ~w~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
+.+..|.+.+++.++..+.....++
T Consensus 342 ~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 342 SAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5566777777777777766544444
No 175
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.36 E-value=3.2e-12 Score=106.08 Aligned_cols=134 Identities=18% Similarity=0.067 Sum_probs=96.1
Q ss_pred HHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch-hHH-HHHHH-HHHHHHHHHHHh--hhHH
Q psy6455 43 SITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KIT-LIGAL-LVDGLCGIASSV--AQYY 116 (249)
Q Consensus 43 ~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-r~~-~~~~~-~~~~i~~~~~~~--~~~~ 116 (249)
.........|.+ .+++|.+..+.+++.+...++..++.++.|+++||..+ |+. +.... ....++...... ..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (379)
T TIGR00881 231 VRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANP 310 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhH
Confidence 334444455554 45689999999999999999999999999999998643 332 22221 222222222222 2344
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
....+..++.|+......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.
T Consensus 311 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 370 (379)
T TIGR00881 311 LMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA 370 (379)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 555566677777655556666778899999999999999999999999999999999997
No 176
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.36 E-value=9e-12 Score=96.93 Aligned_cols=147 Identities=14% Similarity=0.084 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455 27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 106 (249)
|..+..........+ ..+..+.+-|.+.+.+|+|.++...+.+...+|..+ .++.|.+.|++|++.++++|.+...++
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 455555555554444 466778888899999999999999999999999986 588999999999999999999999999
Q ss_pred HHHHHhh-------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 107 GIASSVA-------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 107 ~~~~~~~-------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
..+...+ .+.|.+.+..++.|.+.+...+.......+.|| ++||++.++.-...++++.+-..+...+.
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 8876543 356777777778888766666666666778887 58999999999999999888777766664
No 177
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.35 E-value=9.5e-12 Score=102.99 Aligned_cols=121 Identities=9% Similarity=0.080 Sum_probs=97.2
Q ss_pred HHHHHHHhhccccccccCCCCcchhhHHHHhH-HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-------
Q psy6455 42 ISITVLSFVLPSAQCDFGMTSSDKGWLNAAPM-LGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA------- 113 (249)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------- 113 (249)
..........|.+.+++|.+..+.+.+.+... ++..++.+++|++.||+|||+.++.+.++.++...+..+.
T Consensus 223 ~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (356)
T TIGR00901 223 LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD 302 (356)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 33444455566665668999999988887665 6778999999999999999999888888877766654442
Q ss_pred ----hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHH
Q psy6455 114 ----QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWT 162 (249)
Q Consensus 114 ----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (249)
++.+.+....++.+++.+...+...+++.|.+|+++|++.+++.+...+
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3456777788899999999999999999999999999999999876643
No 178
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.34 E-value=9.4e-12 Score=107.16 Aligned_cols=137 Identities=12% Similarity=0.015 Sum_probs=113.4
Q ss_pred HHHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh----hh
Q psy6455 40 AAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV----AQ 114 (249)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----~~ 114 (249)
..+.......++|.+.+ .+|.++.+.++......++..++.++.|++.||+|||+.+.++.++.+++..+..+ ..
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 346 (485)
T TIGR00711 267 LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDT 346 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 33344444555666554 48999999999999999999999999999999999999999998888888776652 12
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
+.+.+....++.|++.+...+.......+..|+++|+++.++.+....+|..+|+.+.+.+.
T Consensus 347 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888999988887777777888899999999999999999999999999988886
No 179
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.34 E-value=3.9e-11 Score=96.68 Aligned_cols=182 Identities=18% Similarity=0.108 Sum_probs=122.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455 22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL 101 (249)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (249)
+++.++.-+.+-.+... ....-+++.-.+.+++|.+..+++.+........++..++.|.++||+|||+..++..+
T Consensus 32 f~~Fqr~yl~vY~La~~----aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~ci 107 (354)
T PF05631_consen 32 FRRFQRKYLLVYLLAMA----ADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCI 107 (354)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34444444433333333 23334444444567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccc-cc----cccchhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy6455 102 VDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLG-EF----QPTAYREKVLCWLE-MFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 102 ~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~-~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l 175 (249)
+..++++ +-..++++.++++|++.|++....+..--++.. |. +|++..+.-.+... ..+++-.+++..++.++
T Consensus 108 ly~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 108 LYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred HHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 9998886 445688999999999999998888877766543 43 22222233333222 22344455555666665
Q ss_pred hcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc-ccCCh
Q psy6455 176 IPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPESP 217 (249)
Q Consensus 176 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~ 217 (249)
.+.. ..+-..+|.....+.+++.+++.. .+|+.
T Consensus 187 ~~~~---------~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 187 ADWF---------GFGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHh---------CCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 5322 123467788777777777666543 56653
No 180
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.34 E-value=3.1e-11 Score=98.59 Aligned_cols=166 Identities=17% Similarity=0.089 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-
Q psy6455 36 LYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA- 113 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~- 113 (249)
.++........++..+|.+ .++|+.++.+.+.+...+.+...+..+.+|+++||+|.+|+..+.....+++..+.++.
T Consensus 226 lY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~ 305 (417)
T COG2223 226 LYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL 305 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence 3333333445556666664 45699999999999999999999999999999999999999999999999888877765
Q ss_pred ------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc
Q psy6455 114 ------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYF 187 (249)
Q Consensus 114 ------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~ 187 (249)
.+....++..+..+++.|.....++.++..++|+ +-|.+.++.....++|+..-|...+...+..
T Consensus 306 ~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t-------- 376 (417)
T COG2223 306 TGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT-------- 376 (417)
T ss_pred cccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc--------
Confidence 3455555556666666666677788888888874 6788999999999999988888888776443
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 188 LYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 188 ~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
..+...|++.....+++.++.+.
T Consensus 377 --g~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 377 --GSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHH
Confidence 46888898888888888776544
No 181
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.33 E-value=1.5e-11 Score=116.36 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=117.9
Q ss_pred HHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh----------
Q psy6455 45 TVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA---------- 113 (249)
Q Consensus 45 ~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---------- 113 (249)
..+...+|.+.+ .+|.+....+++.+.+.++..+++++.|+++|+.++++.+..+.++..++.+.+.+.
T Consensus 242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (1140)
T PRK06814 242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQ 321 (1140)
T ss_pred HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccc
Confidence 334445666554 489999999999999999999999999999998887776666665555554433332
Q ss_pred ----------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455 114 ----------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE 183 (249)
Q Consensus 114 ----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 183 (249)
++.+.+.+..++.|++.+...+...+++.+.+|++.||+++|..++...+|..+++.+.+.+....
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~---- 397 (1140)
T PRK06814 322 LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG---- 397 (1140)
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 566777888889999999888889999999999999999999999999999999999988885322
Q ss_pred CcccccchhHHHHHHHHHHHHHH
Q psy6455 184 TPYFLYSSWNLFVTLVSVPSILL 206 (249)
Q Consensus 184 ~~~~~~~~w~~~~~~~~~~~~~~ 206 (249)
.++...+++.++..++.
T Consensus 398 ------~~~~~~~~~~~~~~~~~ 414 (1140)
T PRK06814 398 ------FSIPWIILFIALANLIV 414 (1140)
T ss_pred ------cCHHHHHHHHHHHHHHH
Confidence 35555555554443333
No 182
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.32 E-value=8e-12 Score=102.06 Aligned_cols=174 Identities=17% Similarity=0.118 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc--chhHHHH-HHHHHH
Q psy6455 28 ILVIFGGLLYAYAAISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ--GRKITLI-GALLVD 103 (249)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~--Grr~~~~-~~~~~~ 103 (249)
+.++.+.+.++......+.+.-..|.+. +..|.|..++.+..+.+-++...|++++|+++||+ |||.... +..++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 4556677777777888888888888755 45899999999999999999999999999999996 6776544 444444
Q ss_pred HHHHHHHHhhh--HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Q psy6455 104 GLCGIASSVAQ--YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTG-GIIVLPAVAWLLIPLNL 180 (249)
Q Consensus 104 ~i~~~~~~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~ 180 (249)
.++....-+++ |++...++.++.|+...+.+........|..|++.-|++.|+...+..+ |...+....+++.
T Consensus 332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~---- 407 (448)
T COG2271 332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA---- 407 (448)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE----
Confidence 55555555554 4588888889999988888888888899999999999999999988887 8888888888876
Q ss_pred cccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 181 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
|..||...|++..+.++++.++...
T Consensus 408 -------d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 408 -------DTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred -------ecCCCcchHHHHHHHHHHHHHHHHH
Confidence 4469999998888877777666433
No 183
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.32 E-value=1.3e-11 Score=106.67 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=113.4
Q ss_pred HHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh---hHH
Q psy6455 41 AISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA---QYY 116 (249)
Q Consensus 41 ~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~ 116 (249)
.........+.|.+ ++.+|.|+.+.++......++..++.++.|++.||+|+|+.+..+.++.+++.++.... ++.
T Consensus 272 ~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 351 (495)
T PRK14995 272 MITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQ 351 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 33344444555554 44589999999999999999999999999999999999999988888887776655432 345
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
+...+..++.|++.|...+.....+.+..|+++++.+.+++++...+|..+|+.+.+.+.+
T Consensus 352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778899999998888888888999999999999999999999999999999888864
No 184
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.32 E-value=1.6e-10 Score=96.35 Aligned_cols=124 Identities=11% Similarity=-0.042 Sum_probs=86.4
Q ss_pred hhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH---hh-hHHHHHHHHH
Q psy6455 49 FVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---VA-QYYGVFLALR 123 (249)
Q Consensus 49 ~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~-~~~~~l~~~~ 123 (249)
...|. +.+++|.++.+.+++.....++..++.++.|++.||+|||+.+..+..+..+..+... .. .+.+...++.
T Consensus 215 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (377)
T PRK11102 215 TAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGV 294 (377)
T ss_pred HcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444 4455899999999999999999999999999999999999999888766544333222 22 2344444444
Q ss_pred HHHHhhhcccccccccccccccccchhHHHHHHHHHH-HHHHHHHHHHHHH
Q psy6455 124 FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMF-WTGGIIVLPAVAW 173 (249)
Q Consensus 124 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~ 173 (249)
.+.+.+.+.........+.|..| +.++++.++.+.. ..+|..+++.++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 295 AAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555566777766 7899999986543 5677777776654
No 185
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.32 E-value=6.3e-11 Score=100.63 Aligned_cols=141 Identities=18% Similarity=0.149 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh--
Q psy6455 38 AYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ-- 114 (249)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-- 114 (249)
++........+...+++.++ +|.+ ...+.+.....++..++.+++++++||+|+|+.+..+.++.+++.++..+.+
T Consensus 235 ~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~ 313 (428)
T PF13347_consen 235 FLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPG 313 (428)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhh
Confidence 33344444555555666555 4543 6778888899999999999999999999999999999999999998888776
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPT-------AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
+.+.+++..++.|++.+...+...++++|..+. ++.|...+.++....++..+++.+.+.+.+..
T Consensus 314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999874 33588888999999999999999888876543
No 186
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.30 E-value=5.7e-11 Score=99.67 Aligned_cols=121 Identities=10% Similarity=-0.030 Sum_probs=80.5
Q ss_pred ccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy6455 51 LPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129 (249)
Q Consensus 51 ~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~ 129 (249)
.|. +.+++|.+..+.+.+.+...++..++.++.+++.||+|||+.++++.++..++.....+.++.+.......+.+.+
T Consensus 226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 305 (392)
T PRK10473 226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAG 305 (392)
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 3456899988999999999999999999999999999999999999988888877777665554444444444444
Q ss_pred hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
.+...+. ....+..|.++|+ +.......++..+++.+++++.
T Consensus 306 ~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~ 347 (392)
T PRK10473 306 FSVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLA 347 (392)
T ss_pred HHHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 2334455554443 3333334455555555555554
No 187
>KOG4686|consensus
Probab=99.30 E-value=2.6e-11 Score=94.22 Aligned_cols=174 Identities=13% Similarity=0.109 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH
Q psy6455 28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG 107 (249)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 107 (249)
+.+..++.++.+..+.+....+. .+++.+|+|+..++-+.+....-.++.+++.|.++||+|++...+.+..+..+..
T Consensus 267 w~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~ 344 (459)
T KOG4686|consen 267 WVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLG 344 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHH
Confidence 34445555555544444444332 3677899999999999999999999999999999999999998888776665543
Q ss_pred -HHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455 108 -IASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186 (249)
Q Consensus 108 -~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 186 (249)
....++ .+.=..+..+.|++........++.++...|+++.|++.+..+...++|-.+.|++++.+.+-.
T Consensus 345 H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~------- 415 (459)
T KOG4686|consen 345 HSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD------- 415 (459)
T ss_pred hhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC-------
Confidence 222222 2222345567788766666667888999999999999999999999999999999999997544
Q ss_pred cccchh-HHHHHHHHHHHHHHHHHhhcc
Q psy6455 187 FLYSSW-NLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 187 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~ 213 (249)
....| ...|.+...+++....+++.+
T Consensus 416 -g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 416 -GSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred -CchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 11234 334444455555554444444
No 188
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.29 E-value=2.4e-11 Score=100.01 Aligned_cols=127 Identities=25% Similarity=0.300 Sum_probs=105.7
Q ss_pred HHHHHHhhcccc-ccccCCC-CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh---hHHH
Q psy6455 43 SITVLSFVLPSA-QCDFGMT-SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA---QYYG 117 (249)
Q Consensus 43 ~~~~~~~~~~~~-~~~~~~s-~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~ 117 (249)
.........|.+ .+++|.+ ..+.+++.+...++..++.++.|+++||+|+|+..........+..+...+. ++..
T Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
T PF07690_consen 221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV 300 (352)
T ss_dssp HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344456666664 7779998 7888999999999999999999999999999887777766666665555443 3456
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy6455 118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLP 169 (249)
Q Consensus 118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 169 (249)
..++..++.|++.+...+...+++.|..|+++|+++.++.+....+|..++|
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6777888899999999999999999999999999999999999999999987
No 189
>PRK09669 putative symporter YagG; Provisional
Probab=99.28 E-value=5.6e-10 Score=95.30 Aligned_cols=131 Identities=10% Similarity=-0.032 Sum_probs=96.1
Q ss_pred hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Q psy6455 49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV--AQYYGVFLALRFIN 126 (249)
Q Consensus 49 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~~~l~ 126 (249)
...+++.++.--+.+..+.+.....+...++.+++++++||+|+|+.+.++.++.++......+ .++.+.+++..++.
T Consensus 250 ~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 329 (444)
T PRK09669 250 GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILF 329 (444)
T ss_pred hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 3334444442223334455666667788889999999999999999999887766654433222 34677777888899
Q ss_pred Hhhhccccccccccccccccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 127 GFAVTGTLGICFPYLGEFQPT-------AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 127 G~~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
|++.+...+...++++|..+. +..|...+..+....+|..+++.+++.+.+..
T Consensus 330 g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 330 NFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998862 23466778888889999999999999887544
No 190
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.28 E-value=1.3e-11 Score=104.90 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=124.0
Q ss_pred hccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh----hcchhHHHH-HHHHHHHHHHHHHHhh-h-------HH
Q psy6455 50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKITLI-GALLVDGLCGIASSVA-Q-------YY 116 (249)
Q Consensus 50 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d----r~Grr~~~~-~~~~~~~i~~~~~~~~-~-------~~ 116 (249)
..+.+.+..|+++...+.+....-+..++..|+.|.++| |+||||.++ ++.+..+++.+++... + ..
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 344455668999999999999999999999999999999 899888655 5778888877776655 3 23
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc-chhHH
Q psy6455 117 GVFLALRFINGFAVTGTLGICFPYLGEFQPT-AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY-SSWNL 194 (249)
Q Consensus 117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~-~~w~~ 194 (249)
..+.+..++..++.........++..|+.++ ++|.+..+..+.+..+|..+...+.+.+.+..+.. +. .+|++
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~-----~~~~~~~~ 178 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGG-----DTSNGYRW 178 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-----ccchHHHH
Confidence 3456677777888888899999999999974 68999999988888888877777766665433110 12 27999
Q ss_pred HHHHHHHHHHHHHHHh-hcccC
Q psy6455 195 FVTLVSVPSILLALWL-TRFPE 215 (249)
Q Consensus 195 ~~~~~~~~~~~~~~~~-~~~~~ 215 (249)
...+.+++.++..+.. +..+|
T Consensus 179 ~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 179 MALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHhhhhhheeee
Confidence 9998888888777664 44577
No 191
>PRK10133 L-fucose transporter; Provisional
Probab=99.28 E-value=9.5e-11 Score=99.80 Aligned_cols=140 Identities=11% Similarity=-0.080 Sum_probs=107.4
Q ss_pred ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccc
Q psy6455 55 QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTL 134 (249)
Q Consensus 55 ~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~ 134 (249)
++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++..+..+.++.. .++...+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999988887777666655555432 3456678899999999
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch-hHHHHHHHHHHHHHHHH
Q psy6455 135 GICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS-WNLFVTLVSVPSILLAL 208 (249)
Q Consensus 135 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~ 208 (249)
|...+...|..++ +.+.+.++..+ ..+|..++|.+.+.+.+ ..| -+..|++..+..+...+
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~-----------~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSD-----------AAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHH-----------hccchHHHHHHHHHHHHHHHH
Confidence 9999999998875 45677777654 34678888888888863 234 56677655444444433
No 192
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.27 E-value=3.4e-10 Score=95.91 Aligned_cols=157 Identities=10% Similarity=-0.043 Sum_probs=106.9
Q ss_pred HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH-hh-----hHHHH
Q psy6455 45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS-VA-----QYYGV 118 (249)
Q Consensus 45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-~~-----~~~~~ 118 (249)
...+..+|.+.++ ..+............+...+..+++|+++||+|+|++++++.+...++..... .. .+++.
T Consensus 269 vg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~ 347 (462)
T PRK15034 269 IGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIA 347 (462)
T ss_pred HHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 3344455554443 22222333334455677888999999999999999999998887777654322 12 24666
Q ss_pred HHHHHHHHHhhhccccccccccccccccc---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 119 FLALRFINGFAVTGTLGICFPYLGEFQPT---------------------AYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
+.+..+...++.|........++.+.+|+ ++-|.+.|+......+|+.+.|.+.+...+
T Consensus 348 ~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~ 427 (462)
T PRK15034 348 FYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLN 427 (462)
T ss_pred HHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHH
Confidence 66666666666777777788888888874 156778888888899999999977666654
Q ss_pred ccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 178 LNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 178 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
.. .++...|+...+..+++.++.++
T Consensus 428 ~~----------g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 428 MT----------GSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred Hc----------CCcHHHHHHHHHHHHHHHHHHHH
Confidence 32 46777788877777777666443
No 193
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.27 E-value=9.3e-11 Score=100.88 Aligned_cols=177 Identities=11% Similarity=0.003 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh----hcchhH-HHHHHHHHHHHHHHH
Q psy6455 36 LYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKI-TLIGALLVDGLCGIA 109 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d----r~Grr~-~~~~~~~~~~i~~~~ 109 (249)
+.+...+.......+++.+ .+.+|+++..+|.+..+.-+.-++..|+.|+++| |+|||| .++++.+..+++..+
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~l 93 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFL 93 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHH
Confidence 3333344445555545444 4557999999999999999999999999999999 669955 555677776766555
Q ss_pred HHhhh------HHHHHHHHHHHHHhhhccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455 110 SSVAQ------YYGVFLALRFINGFAVTGTLGICFPYLGEFQ-PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI 182 (249)
Q Consensus 110 ~~~~~------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 182 (249)
+...+ .+..+.+..++.+++......+..++..|+. ++++|.+..++...+..+|..+.+.+...+....+.
T Consensus 94 lf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~- 172 (473)
T PRK10429 94 LFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG- 172 (473)
T ss_pred HHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 54322 1334556666778888888888899999998 688999999886666677766665554433221100
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHhhc-ccCC
Q psy6455 183 ETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPES 216 (249)
Q Consensus 183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (249)
..+..+|+....+.+++.++..+..++ .+|.
T Consensus 173 ---~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 173 ---GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred ---CchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 002246787777777776665554333 5664
No 194
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.27 E-value=5.2e-13 Score=115.47 Aligned_cols=184 Identities=16% Similarity=0.170 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh
Q psy6455 33 GGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV 112 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 112 (249)
.++..+.+..........+.++++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++.+++++
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 33444444666777778889999999999999999999999999999999999999988888989999999999887764
Q ss_pred --------------------------h-------------------h-----HHHHHHHHHHHHHhhhcccccccccccc
Q psy6455 113 --------------------------A-------------------Q-----YYGVFLALRFINGFAVTGTLGICFPYLG 142 (249)
Q Consensus 113 --------------------------~-------------------~-----~~~~l~~~~~l~G~~~g~~~~~~~~~~~ 142 (249)
. . .+..++++.++.|+|....++...+|+-
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 1 0 1356788999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-----------CcccccchhHHHHHHHHHHHHHHHHHhh
Q psy6455 143 EFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE-----------TPYFLYSSWNLFVTLVSVPSILLALWLT 211 (249)
Q Consensus 143 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~-----------~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 211 (249)
|..++++-+...|+......+|.++|-++++.+.+...... .+...-+.|+.-|++.+++.++..+.++
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~ 247 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF 247 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988875431111 1112224688889999999888888888
Q ss_pred cccCC
Q psy6455 212 RFPES 216 (249)
Q Consensus 212 ~~~~~ 216 (249)
.+|+.
T Consensus 248 ~FPk~ 252 (539)
T PF03137_consen 248 FFPKK 252 (539)
T ss_dssp -----
T ss_pred cCCcc
Confidence 87765
No 195
>KOG0253|consensus
Probab=99.27 E-value=1.3e-10 Score=93.53 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhH
Q psy6455 72 PMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYRE 151 (249)
Q Consensus 72 ~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 151 (249)
..+.-..|.++.+++.||+|||+.+..+++++.++.++...+.+-....+..+..-++..+.+.+.+.|..|.+|+..|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34556789999999999999999999999999999888777655444444444444555666778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455 152 KVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPE 215 (249)
Q Consensus 152 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
.+.|.......+|+++.|+++ ... ..+-..+..+.+...+++.++..++|-
T Consensus 470 tgvGtcSsmaRIggI~~p~iA-~~~------------e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA-MRA------------ELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH-HHh------------ccceeehHHHHHHHHHHHHHHheeeee
Confidence 999999999999999999998 332 123344566677777778777777764
No 196
>PRK11043 putative transporter; Provisional
Probab=99.23 E-value=4.1e-10 Score=94.78 Aligned_cols=128 Identities=15% Similarity=0.030 Sum_probs=97.5
Q ss_pred HhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH---h--hhHHHHHHHH
Q psy6455 48 SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---V--AQYYGVFLAL 122 (249)
Q Consensus 48 ~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~--~~~~~~l~~~ 122 (249)
....|.+.+++|.+..+.++......++..++..+.+++.||+|+|+.+....+..+++.+... . .++.+.+++.
T Consensus 223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (401)
T PRK11043 223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP 302 (401)
T ss_pred HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3445666677899998999988888889999999999999999999877665555444433221 1 2345555566
Q ss_pred HHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
..+.|++.+..++.......|..| ++|+++.++.+.....+...++.+.+.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 355 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI 355 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 677888888888888777777776 57999999999888888888888888775
No 197
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.23 E-value=1.9e-10 Score=96.47 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=114.3
Q ss_pred HHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc-hhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455 41 AISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG-RKITLIGALLVDGLCGIASSVAQYYGVF 119 (249)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~~~~~~~l 119 (249)
.+......++++.+.++.|.|..++|.+.+...+...+.++++|.++||.+ +|+++.+..++.++........++++.+
T Consensus 15 f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~ 94 (400)
T PF03825_consen 15 FFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWL 94 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344555667788888999999999999999999999999999999999986 5777778777777777777777888888
Q ss_pred HHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccCcccccchhHHHHHH
Q psy6455 120 LALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAV-AWLLIPLNLRIETPYFLYSSWNLFVTL 198 (249)
Q Consensus 120 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l-~~~l~~~~~~~~~~~~~~~~w~~~~~~ 198 (249)
++..++..+......|...++..+...+ ++.-.+-.-...++|-+++... +..+.... +..+....+++
T Consensus 95 ~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~--------~~~~~~~~~~i 164 (400)
T PF03825_consen 95 FVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYL--------GISGTSLIFYI 164 (400)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhh--------ccccccHHHHH
Confidence 8888888887777777777777777653 2333444444444555544332 22222111 11233345566
Q ss_pred HHHHHHHHHHHhhcccCCh
Q psy6455 199 VSVPSILLALWLTRFPESP 217 (249)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~ 217 (249)
.+...++.....+.+|+.|
T Consensus 165 ~~~~~~ll~~~~l~lp~~~ 183 (400)
T PF03825_consen 165 AAILSLLLAGFALFLPKTP 183 (400)
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 6665555555555677766
No 198
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.16 E-value=5.2e-09 Score=87.98 Aligned_cols=180 Identities=11% Similarity=0.063 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh
Q psy6455 36 LYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ 114 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 114 (249)
..++......+.+....++.+. +|.+.....+.......+..++.+++.++.+|+|+|+++.++.++.+++..+..+.+
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444555566666666554 676666777788888888888899999999999999999999999999998887765
Q ss_pred --HHHHHHHHHHHHHhhhccccccccccccccccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Q psy6455 115 --YYGVFLALRFINGFAVTGTLGICFPYLGEFQPT-------AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP 185 (249)
Q Consensus 115 --~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 185 (249)
+.+.+++..++.+++.+...+...++++|..+- +.-|...+..+...=+|..++..+.+++....+--++.
T Consensus 324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~ 403 (467)
T COG2211 324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNV 403 (467)
T ss_pred CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 688888899999999999999999999988754 22366667777777888888888877776543211111
Q ss_pred ----ccccchhHHHHHHH-HHHHHHHHHHhhcccC
Q psy6455 186 ----YFLYSSWNLFVTLV-SVPSILLALWLTRFPE 215 (249)
Q Consensus 186 ----~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~ 215 (249)
...-.+-+..+.+. ++..++.++...+.|-
T Consensus 404 ~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y~L 438 (467)
T COG2211 404 SAQSASALFGIRFLFIILPALLLLLAAIIIFFYKL 438 (467)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 11123444444444 4444444554444443
No 199
>PRK11462 putative transporter; Provisional
Probab=99.15 E-value=1.1e-09 Score=93.84 Aligned_cols=172 Identities=13% Similarity=-0.018 Sum_probs=121.7
Q ss_pred HHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh----cchhHHHH-HHHHHHHHHHHHHHhhh
Q psy6455 41 AISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKITLI-GALLVDGLCGIASSVAQ 114 (249)
Q Consensus 41 ~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr----~Grr~~~~-~~~~~~~i~~~~~~~~~ 114 (249)
.......+.++.. +.+..|+++..+|.+..+.-+.-++.-|+.|.++|| +||||..+ ++.+..+++..++...+
T Consensus 22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p 101 (460)
T PRK11462 22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP 101 (460)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence 3334444444444 445589999999999999999999999999999995 79987665 56667777666554433
Q ss_pred H------HHHHHHHHHHHHhhhcccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc
Q psy6455 115 Y------YGVFLALRFINGFAVTGTLGICFPYLGEFQP-TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYF 187 (249)
Q Consensus 115 ~------~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~ 187 (249)
+ ...+.+...+..++......+..++.+|+.+ +++|++..++...+..+|..+++.+...+....+.. .
T Consensus 102 ~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~----~ 177 (460)
T PRK11462 102 DLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGD----N 177 (460)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----c
Confidence 2 3445566667788888888888899999987 688999999999998888888877765554322110 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhc-ccCC
Q psy6455 188 LYSSWNLFVTLVSVPSILLALWLTR-FPES 216 (249)
Q Consensus 188 ~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (249)
+..+|+....+.+++.+++.++.+. .+|.
T Consensus 178 ~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 178 KPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 2247888777777777666555433 4554
No 200
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.13 E-value=3.9e-10 Score=96.78 Aligned_cols=156 Identities=15% Similarity=0.011 Sum_probs=121.2
Q ss_pred cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHH
Q psy6455 56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV----------AQYYGVFLALRFI 125 (249)
Q Consensus 56 ~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----------~~~~~~l~~~~~l 125 (249)
+.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++...... .++.+.+....++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 468999999999999999999999999999999999999999999999887755321 1333445566778
Q ss_pred HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHH-HHHHHHHHHH
Q psy6455 126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNL-FVTLVSVPSI 204 (249)
Q Consensus 126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~ 204 (249)
.+++.+....+...++.+..|++.+++..++.+...++|..+++.+++.+.+..+... ++.+..+ ...+..+..+
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~----~~~~~~~~~i~i~~~~~l 436 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITC----DNSNNLWLLILGHSLAPL 436 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----ccccchHHHHHHHHHHHH
Confidence 8888888888899999999999999999999999999999999999999976543211 1222222 3334445555
Q ss_pred HHHHHhhcccC
Q psy6455 205 LLALWLTRFPE 215 (249)
Q Consensus 205 ~~~~~~~~~~~ 215 (249)
+.+...+++|+
T Consensus 437 ~~l~~~~llP~ 447 (468)
T TIGR00788 437 LPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHhCCC
Confidence 55555667785
No 201
>KOG3626|consensus
Probab=99.12 E-value=7.4e-10 Score=97.06 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455 29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI 108 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 108 (249)
.+.+..+..+.+++....+...+.++.+.|+++.++.|++.+.+-++..+...+..+...|..|-+.+-+|.++.+++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 34555666677777778888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh--------------------h-------------------------------HHH-HHHHHHHHHHhhhcccccc
Q psy6455 109 ASSVA--------------------Q-------------------------------YYG-VFLALRFINGFAVTGTLGI 136 (249)
Q Consensus 109 ~~~~~--------------------~-------------------------------~~~-~l~~~~~l~G~~~g~~~~~ 136 (249)
++++- + .++ .++++.++.|+|....++.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 87751 0 022 5677889999999999999
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------cCcccccchhHHHHHHHHHHHHHHHH
Q psy6455 137 CFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI--------ETPYFLYSSWNLFVTLVSVPSILLAL 208 (249)
Q Consensus 137 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~--------~~~~~~~~~w~~~~~~~~~~~~~~~~ 208 (249)
..+|+-|...+++-...+|+......+|.++|-++++++.+..-.. +.+...-+.|+.-|++.+.+.++..+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987654222 12333445788899999999999999
Q ss_pred HhhcccCCh
Q psy6455 209 WLTRFPESP 217 (249)
Q Consensus 209 ~~~~~~~~~ 217 (249)
.++++|+..
T Consensus 338 p~f~fPk~l 346 (735)
T KOG3626|consen 338 PLFFFPKEL 346 (735)
T ss_pred HHHhCcccC
Confidence 988887653
No 202
>KOG2563|consensus
Probab=99.09 E-value=2.8e-09 Score=87.98 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=129.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455 22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL 101 (249)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (249)
..++||..+++..+..+.+++.+..+.+...+....|| +.+.+-|...+|.+.+....+.+-|+.|++|-|...+++..
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 44667777778888888887777777777666666678 77788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh------hHHH--HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 102 VDGLCGIASSVA------QYYG--VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAW 173 (249)
Q Consensus 102 ~~~i~~~~~~~~------~~~~--~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 173 (249)
+..++..+-..+ +.++ ....+..+.+..+-.....-.....-|+++++|..+..+-.++..+|.+++.++..
T Consensus 118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 999998875543 2344 66778888888776666665677788999999999999999999999999999988
Q ss_pred HHhccc
Q psy6455 174 LLIPLN 179 (249)
Q Consensus 174 ~l~~~~ 179 (249)
.+....
T Consensus 198 ilV~~~ 203 (480)
T KOG2563|consen 198 ILVPSS 203 (480)
T ss_pred eecCCC
Confidence 887543
No 203
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.09 E-value=5.4e-09 Score=89.96 Aligned_cols=137 Identities=9% Similarity=0.055 Sum_probs=108.5
Q ss_pred hhhHHHHhHHHHHHHHHHHHh----hhhh-cchhHHH--HHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHh
Q psy6455 65 KGWLNAAPMLGMVFGSYFWGC----LADT-QGRKITL--IGALLVDGLCGIASSV---------AQYYGVFLALRFINGF 128 (249)
Q Consensus 65 ~~~~~~~~~i~~~i~~~~~g~----l~dr-~Grr~~~--~~~~~~~~i~~~~~~~---------~~~~~~l~~~~~l~G~ 128 (249)
.+++.+...+...+.+++..+ +.|| .+.+... .+|.++.+++.....+ ..|++++++..++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 678888888888888888664 4444 2333333 6788888887776654 3588999999999999
Q ss_pred hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455 129 AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL 208 (249)
Q Consensus 129 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 208 (249)
|.....|...+++.+..|++.|++.++++.....+|..+++.+..... +..+|...|...++..++..+
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 462 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGA-----------VPQGVTGVFGKIGLVTLLVGV 462 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887765 234677788777777766666
Q ss_pred Hhhc
Q psy6455 209 WLTR 212 (249)
Q Consensus 209 ~~~~ 212 (249)
..++
T Consensus 463 ~~~~ 466 (475)
T TIGR00924 463 VMAL 466 (475)
T ss_pred HHHH
Confidence 5433
No 204
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.08 E-value=6.5e-09 Score=83.71 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy6455 39 YAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLCGIASSVAQYYG 117 (249)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~ 117 (249)
.+.+..++....+|.+..|.|+|+.+.|++.+...+.....++....+.+|. ++|+..+...+...++...+.+.+.-.
T Consensus 219 lqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~ 298 (395)
T COG2807 219 LQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL 298 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3455667778889999999999999999999999999999999999999965 566677777777777777777766433
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455 118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAY-REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV 196 (249)
Q Consensus 118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~ 196 (249)
.+.. -++.|+|.|..++.....+.+-.+..+ -++-.++.|....+=...||.+.|++-|.. .+|+...
T Consensus 299 ~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~----------gsw~~~~ 367 (395)
T COG2807 299 PILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT----------GSWSAPL 367 (395)
T ss_pred HHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc----------CChHHHH
Confidence 2222 489999999999999998887765544 455555677777778888999999997654 7899988
Q ss_pred HHHHHHHHHHHHHhhc
Q psy6455 197 TLVSVPSILLALWLTR 212 (249)
Q Consensus 197 ~~~~~~~~~~~~~~~~ 212 (249)
+..+...++..+.-+.
T Consensus 368 ~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 368 VLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888777777666443
No 205
>PRK11462 putative transporter; Provisional
Probab=99.07 E-value=3.3e-08 Score=84.81 Aligned_cols=117 Identities=9% Similarity=-0.031 Sum_probs=80.5
Q ss_pred CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhhhccccccccc
Q psy6455 62 SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ--YYGVFLALRFINGFAVTGTLGICFP 139 (249)
Q Consensus 62 ~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~ 139 (249)
....+.+.+.+.++..++.+++++++||+|+|+.+..+..+..+..++..+.+ +...+.+.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888999999999999999999987765554444333332322 2333444556678777666666677
Q ss_pred ccccccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455 140 YLGEFQP-------TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 140 ~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 178 (249)
+++|..+ .+.-|...+......-+|..+++.+++.+...
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766 33335556677778889999999988887654
No 206
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=99.07 E-value=4.9e-09 Score=83.81 Aligned_cols=156 Identities=28% Similarity=0.360 Sum_probs=121.3
Q ss_pred HHHHHHHhhccccccccCCCC--cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH--HH
Q psy6455 42 ISITVLSFVLPSAQCDFGMTS--SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY--YG 117 (249)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~ 117 (249)
..........+.+..+++.+. ...+++.+.+.++..++.++.|+++||+|||+.++.+.....++.+...+..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 444445555666666666555 47899999999999999999999999999998888888765555556665555 88
Q ss_pred HHHHHHHHHHhhhccccccccccccccccc-chhHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455 118 VFLALRFINGFAVTGTLGICFPYLGEFQPT-AYREKVLCWLEM-FWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF 195 (249)
Q Consensus 118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~ 195 (249)
.+++.|++.|++.+...+...+++.|..|+ ++|+...+.... ...+|..+++.+++.+... ...+|+..
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 166 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---------LLWGWRAA 166 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhcchHHH
Confidence 899999999999998899999999999987 678888888777 5788889998887777532 12478886
Q ss_pred HHHHHHHHHHH
Q psy6455 196 VTLVSVPSILL 206 (249)
Q Consensus 196 ~~~~~~~~~~~ 206 (249)
+..........
T Consensus 167 ~~~~~~~~~~~ 177 (338)
T COG0477 167 FLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHH
Confidence 66666555433
No 207
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.06 E-value=2e-08 Score=84.37 Aligned_cols=126 Identities=14% Similarity=0.010 Sum_probs=93.8
Q ss_pred hccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHH-HHHHHHHHHHHh--hhHHHHHHHHHHH
Q psy6455 50 VLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGAL-LVDGLCGIASSV--AQYYGVFLALRFI 125 (249)
Q Consensus 50 ~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~-~~~~i~~~~~~~--~~~~~~l~~~~~l 125 (249)
..+.+.++ +|.+..+.+++.....++..+++.+.+++.||++++....... ....+....... ..+.+.+.+..++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAAL 308 (394)
T ss_pred hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34444444 8989889999998889999999999999999998443332222 222222222221 2345667777888
Q ss_pred HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
.|++.+...+....+..|..| ++++...++.+....+|..+++.+++.+.
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 309 FFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999889999999999887 57899999999999999999999988874
No 208
>KOG2532|consensus
Probab=99.04 E-value=1.9e-09 Score=91.75 Aligned_cols=175 Identities=14% Similarity=0.104 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch---------hHHHHH
Q psy6455 29 LVIFGGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR---------KITLIG 98 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr---------r~~~~~ 98 (249)
.++.+.+..+........+..++|.+.++ +|.+..+.|++.++..+.+.+..+++|.++||.-+ |..=.+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence 45667777788888888888899998776 99999999999999999999999999999998754 233334
Q ss_pred HHHHHHHHHHHHHhhhH--H-HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 99 ALLVDGLCGIASSVAQY--Y-GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 99 ~~~~~~i~~~~~~~~~~--~-~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 175 (249)
+....+++.+.+++.++ . ..++..-+..++ .|...+..+.-..+. .+++-+..+++.+....+.+.++|.+.+.+
T Consensus 339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~-~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~ 416 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL-SGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGII 416 (466)
T ss_pred HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH-cccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence 55555666666666552 2 122222222222 122233233233332 457889999999999999999999999999
Q ss_pred hcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 176 IPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 176 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
.... +...|+.+|++.+++.++..+.+.++
T Consensus 417 ~~~~--------t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 417 VTDN--------TREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eCCC--------CHHHHHHHHHHHHHHHHHhchheeEe
Confidence 7422 34689999999999999988765554
No 209
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.01 E-value=3.5e-08 Score=85.53 Aligned_cols=145 Identities=9% Similarity=0.063 Sum_probs=103.9
Q ss_pred hhhHHHHhHHHHHHHHHHH----HhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHhhhc
Q psy6455 65 KGWLNAAPMLGMVFGSYFW----GCLADTQGRKITLIGALLVDGLCGIASSVAQY---------YGVFLALRFINGFAVT 131 (249)
Q Consensus 65 ~~~~~~~~~i~~~i~~~~~----g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~---------~~~l~~~~~l~G~~~g 131 (249)
.+++.+...+...+.+++. +++.+|++.++.+.+|.++.+++.+...+..+ .+++++..++.|++.+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5666677776666666665 67777777778899999999999888776654 4678899999999999
Q ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHh
Q psy6455 132 GTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWL 210 (249)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 210 (249)
...|....++.+..|++.|++.+|++.....+|..++..+........... +......+..+.|...++..++..++.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~a~~~ 475 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVT-DPLMSLEVYGRVFLQIGIATAVIAVLM 475 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877777777766664332000000 000011236677877777666554443
No 210
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.01 E-value=7.7e-09 Score=87.40 Aligned_cols=126 Identities=10% Similarity=-0.034 Sum_probs=94.0
Q ss_pred hhcccccccc--CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy6455 49 FVLPSAQCDF--GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126 (249)
Q Consensus 49 ~~~~~~~~~~--~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~ 126 (249)
..++.+.++. +.+....+...+.+..+..+|.++++++.||+++|+++.++.++.++..++..+.++... ....++.
T Consensus 253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~ 331 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC 331 (410)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 3444444443 334444455666667788999999999999999999999998888888887777666443 5666777
Q ss_pred HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
|++.+..+|...+...+..+++.+.....+.. . .+|+.+.|.+.+++.+
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIID 380 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHH
Confidence 88888889999999999998765433333333 3 3899999999999985
No 211
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.7e-08 Score=84.91 Aligned_cols=179 Identities=13% Similarity=0.037 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh----hcchhHHHH-HHHHHHHHHHH
Q psy6455 35 LLYAYAAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKITLI-GALLVDGLCGI 108 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d----r~Grr~~~~-~~~~~~~i~~~ 108 (249)
+.-+...........++..+.. ..|+++..+|.+..+.=+--++.-|+.|.++| |+||+|.++ ++.+..++...
T Consensus 19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~ 98 (467)
T COG2211 19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV 98 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence 3444444555555566666554 48999999999999999999999999999999 578876554 56677777777
Q ss_pred HHHhhh------HHHHHHHHHHHHHhhhcccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455 109 ASSVAQ------YYGVFLALRFINGFAVTGTLGICFPYLGEFQP-TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR 181 (249)
Q Consensus 109 ~~~~~~------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 181 (249)
++..++ +.....+...+.+++......+..++.+|+.+ +++|.+..++.+.+..+|..+...+...+....++
T Consensus 99 l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~ 178 (467)
T COG2211 99 LLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG 178 (467)
T ss_pred HHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 776665 34556677888899999998889999999974 47899999999999888988877777666554422
Q ss_pred ccCcccccchhHHHHHHHHHHHHHHHHHhhc-ccCCh
Q psy6455 182 IETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPESP 217 (249)
Q Consensus 182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~ 217 (249)
.+ ...||+....+.+++..+..++.++ .+|.+
T Consensus 179 ~~----~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 179 GD----KALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred Cc----chhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 21 2468998888888888777776554 56654
No 212
>PRK09848 glucuronide transporter; Provisional
Probab=99.00 E-value=1.2e-08 Score=87.35 Aligned_cols=123 Identities=10% Similarity=-0.050 Sum_probs=83.4
Q ss_pred ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc----chhHHH-HHHHHHHHHHHHHHH-h----hh--HHHH
Q psy6455 51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ----GRKITL-IGALLVDGLCGIASS-V----AQ--YYGV 118 (249)
Q Consensus 51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~~-~----~~--~~~~ 118 (249)
.+++.+..|++..++|.+.+...+..++..++.|+++||. ||||.+ +++.+...+...+.. . .. ....
T Consensus 32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 3445566899999999999999999999999999999996 777755 455554444433322 1 11 2233
Q ss_pred HHHHHHHHHhhhccccccccccccccccc-chhHHHHHHHHHHHH-----HHHHHHHHHHH
Q psy6455 119 FLALRFINGFAVTGTLGICFPYLGEFQPT-AYREKVLCWLEMFWT-----GGIIVLPAVAW 173 (249)
Q Consensus 119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~-----~g~~~~~~l~~ 173 (249)
..+..++.+++.+...+...++..|+..+ ++|.+..++...+.. ++..++|.+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677888888887777777777654 678887776654433 44455555554
No 213
>KOG0252|consensus
Probab=99.00 E-value=1.7e-09 Score=89.39 Aligned_cols=186 Identities=16% Similarity=0.052 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhh--------HHHH-hHHHHHHHHHHHHhhhhhcchhHHHHH
Q psy6455 28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGW--------LNAA-PMLGMVFGSYFWGCLADTQGRKITLIG 98 (249)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~~~-~~i~~~i~~~~~g~l~dr~Grr~~~~~ 98 (249)
+.++.....++..-...+..+.....+.++.++.+..... ...+ ...++..|-.+...+.|++|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5556666777777777777777777777877776655433 1111 112223355566779999999999999
Q ss_pred HHHHHHHHHHHHHhhhH----HHHHHHHHHHHHh-hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 99 ALLVDGLCGIASSVAQY----YGVFLALRFINGF-AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAW 173 (249)
Q Consensus 99 ~~~~~~i~~~~~~~~~~----~~~l~~~~~l~G~-~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 173 (249)
+.++..+..+..+...+ ...+++...+..+ +.-+..+....+.+|.+|.+.|++.-++.....-.|++++.....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999998888776544 1222222222222 222345666778899999999999999999999999999998888
Q ss_pred HHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhH
Q psy6455 174 LLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKF 219 (249)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (249)
++.+-. .....+.++++++.+.++++..+..+++||+..+
T Consensus 464 ~~t~~~------yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~ 503 (538)
T KOG0252|consen 464 YLTDHN------YPPNIGVRNVFIILAGCMLLGILFTLLIPETKGK 503 (538)
T ss_pred Hhhhcc------CCccccchHHHHHHHHHHHHhHheeEEeeccccc
Confidence 876421 1134688999999999999999998889988653
No 214
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.98 E-value=3.2e-09 Score=88.31 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH--HHHHHH-Hhh
Q psy6455 38 AYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG--LCGIAS-SVA 113 (249)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~--i~~~~~-~~~ 113 (249)
+...+...+..++.+.+.++ .|+|.+++|.+.+...+...+.+++.|.++||.|.||-++....+.. .+.+.. .+.
T Consensus 17 f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~ 96 (412)
T PF01306_consen 17 FFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFG 96 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344466666777776665 89999999999999999999999999999999997776554433322 222221 222
Q ss_pred hHH-HHHHHHHHHHHhhhcccc----cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Q psy6455 114 QYY-GVFLALRFINGFAVTGTL----GICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFL 188 (249)
Q Consensus 114 ~~~-~~l~~~~~l~G~~~g~~~----~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~ 188 (249)
+-. .-+.++-++.|+..+..+ +..-+++.+.. ++.+.-.|-.-+..++|.+++..++|.+.+.
T Consensus 97 pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i---------- 164 (412)
T PF01306_consen 97 PLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI---------- 164 (412)
T ss_dssp HHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----------
Confidence 211 112223333334333333 33333332222 2334445556677889999999999998632
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 189 YSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 189 ~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
+-+..|++....+++..++.++.
T Consensus 165 --~p~~~fwi~s~~~~il~lll~~~ 187 (412)
T PF01306_consen 165 --NPNIIFWIASAAAIILLLLLLLL 187 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred --CccHHHHHHHHHHHHHHHHHHHc
Confidence 34566776666555555554444
No 215
>KOG2816|consensus
Probab=98.98 E-value=2.3e-08 Score=85.05 Aligned_cols=132 Identities=23% Similarity=0.373 Sum_probs=106.1
Q ss_pred HhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhcccccccccccccccccc
Q psy6455 71 APMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGF--AVTGTLGICFPYLGEFQPTA 148 (249)
Q Consensus 71 ~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~--~~g~~~~~~~~~~~~~~~~~ 148 (249)
...+...+.++..|.++||+|||..+.+..+...+..+...+.. +|.++ +.++ +.+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 34677889999999999999999999999998888877776666 33333 3333 23455788889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455 149 YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 149 ~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
.|....++.+..+..+..++|.+++.+.. ..+.-.+|.+.++..++..+. .+++||+..
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~-----------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVK-----------FLGIALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------hcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence 99999999999999999999999999973 357778888888888887776 455787743
No 216
>KOG0254|consensus
Probab=98.97 E-value=3.8e-08 Score=85.62 Aligned_cols=178 Identities=15% Similarity=0.022 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH
Q psy6455 28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG 107 (249)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 107 (249)
+.+..+.+..+.+.........+.+.+.+..|.+... .+......+...++..+...+.||+|||+.++.+.....++.
T Consensus 295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~ 373 (513)
T KOG0254|consen 295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICL 373 (513)
T ss_pred HHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHH
Confidence 3444444444544444455566677777777766444 666667777788888888999999999999999999999998
Q ss_pred HHHHhhhH-------------HHHHH-HHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 108 IASSVAQY-------------YGVFL-ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAW 173 (249)
Q Consensus 108 ~~~~~~~~-------------~~~l~-~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 173 (249)
++++.... ...+. ...++..+. .+..+....+.+|.+|.+.|+.+.++......+...+-.....
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~-~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~ 452 (513)
T KOG0254|consen 374 VILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFA-IGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP 452 (513)
T ss_pred HHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHh-cccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 87764321 11122 222333333 3345566678899999999999999866554444433333333
Q ss_pred HHhcccccccCcccccchhHHHHHHHHHHHHHHHH--HhhcccCChh
Q psy6455 174 LLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL--WLTRFPESPK 218 (249)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~ 218 (249)
..... .++...|...+..+.+... ..+++||+..
T Consensus 453 ~~~~~-----------~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg 488 (513)
T KOG0254|consen 453 FITEA-----------LGIGGTFGYFGGICLLSLIIFVFFFVPETKG 488 (513)
T ss_pred HHHHh-----------ccccchHHHHHHHHHHHHHHHheEEcccCCC
Confidence 33211 1123444444444444444 4666798743
No 217
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.94 E-value=2.4e-09 Score=88.76 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=86.5
Q ss_pred HHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh--hh--HHHHHHH
Q psy6455 47 LSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV--AQ--YYGVFLA 121 (249)
Q Consensus 47 ~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~--~~~~l~~ 121 (249)
.....|.+. +.+|.+..+.+++.+...++..++.+++|+++||+|+|+.+..+......+..+..+ .+ +.+...+
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
T TIGR00886 244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV 323 (366)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 334444444 558999999999999999999999999999999999998887777666665554443 22 5555555
Q ss_pred HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHH
Q psy6455 122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGG 164 (249)
Q Consensus 122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 164 (249)
...+.+++.|...+...+.+++..| ++++...|+.+....+|
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 5555666666666777788888887 68999999987766554
No 218
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.93 E-value=1.6e-07 Score=77.22 Aligned_cols=161 Identities=15% Similarity=0.007 Sum_probs=130.1
Q ss_pred ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH
Q psy6455 51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD-TQGRKITLIGALLVDGLCGIASSV---AQYYGVFLALRFIN 126 (249)
Q Consensus 51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~~~l~ 126 (249)
-|+=.+-+|++..+...++.....|..++....|++.. |.++++.-.+++.+.+++..+..+ ..+.+.+...-++.
T Consensus 232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~ 311 (403)
T PF03209_consen 232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLL 311 (403)
T ss_pred CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 34445569999999999999999999999999998877 778888888888887777665444 35778899999999
Q ss_pred HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL 206 (249)
Q Consensus 127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 206 (249)
|++.|.......+.+.++..+++.|..+|.+...+.++..++..+++.+.|........ ....+|-.+|.+-++..+++
T Consensus 312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~-~~~~aY~~VF~lEa~ll~~a 390 (403)
T PF03209_consen 312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN-SPALAYGVVFALEAVLLLAA 390 (403)
T ss_pred HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHH
Confidence 99999988888899999999999999999999999999999999999987654222110 13457888888888887777
Q ss_pred HHHhhc
Q psy6455 207 ALWLTR 212 (249)
Q Consensus 207 ~~~~~~ 212 (249)
+++...
T Consensus 391 ~~ll~~ 396 (403)
T PF03209_consen 391 LVLLGR 396 (403)
T ss_pred HHHHHH
Confidence 776543
No 219
>KOG3762|consensus
Probab=98.89 E-value=2e-09 Score=90.49 Aligned_cols=147 Identities=13% Similarity=0.054 Sum_probs=126.5
Q ss_pred cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccc
Q psy6455 54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGT 133 (249)
Q Consensus 54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~ 133 (249)
..+|.+-.+...|........+-...=++.+++..|+|+-+++..++....+=.+..++..|.|+.+...+++|+..+..
T Consensus 397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali 476 (618)
T KOG3762|consen 397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI 476 (618)
T ss_pred HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence 35677767777787667777777888889999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Q psy6455 134 LGICFPYLGEFQPTAYREKVLCWLEM-FWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLT 211 (249)
Q Consensus 134 ~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 211 (249)
+....+|++...|++.|.++.++.+. ..++|-.+|.++++.+. +..+-|..|.+.++.+++.++...
T Consensus 477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v-----------~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV-----------ERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh-----------eeehhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999765 46899999999999997 445777888887777766665533
No 220
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.86 E-value=1.7e-07 Score=79.35 Aligned_cols=132 Identities=12% Similarity=0.017 Sum_probs=85.5
Q ss_pred HHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH-----hhhHHH
Q psy6455 44 ITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS-----VAQYYG 117 (249)
Q Consensus 44 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-----~~~~~~ 117 (249)
........|.+.++ +|.++.+.++.......+..++..+.+++.++..+++.......+..++..+.. ..++++
T Consensus 234 ~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~ 313 (413)
T PRK15403 234 MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWL 313 (413)
T ss_pred HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHH
Confidence 34455566765554 799999999998888888888888888876554444433222222222222221 123343
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
..++..++.++|.+...+......-+ -....+|++.++.+.....+..+++.+.+++.
T Consensus 314 ~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~ 371 (413)
T PRK15403 314 WSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLW 371 (413)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888877776632211 12224788899988888888888888888885
No 221
>KOG3764|consensus
Probab=98.86 E-value=1.9e-09 Score=87.67 Aligned_cols=160 Identities=17% Similarity=0.165 Sum_probs=125.5
Q ss_pred HHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455 43 SITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG--RKITLIGALLVDGLCGIASSVAQYYGVF 119 (249)
Q Consensus 43 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~l 119 (249)
.....-+.++. +.+++..+.-+.|+......+.+.++..+.|.++||++ |-...+.+++...+++....+++++..+
T Consensus 285 ~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L 364 (464)
T KOG3764|consen 285 SLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQL 364 (464)
T ss_pred hHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHH
Confidence 33444455555 34557755558999999999999999999999999999 5555556677777777788899999999
Q ss_pred HHHHHHHHhhhcccccccccccccccccch------hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455 120 LALRFINGFAVTGTLGICFPYLGEFQPTAY------REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN 193 (249)
Q Consensus 120 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~ 193 (249)
.+-++..|++.+...+.......+..+.++ .|...++.+..+.+|..+||.+++.+. +..|++
T Consensus 365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv-----------~~iGF~ 433 (464)
T KOG3764|consen 365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV-----------EAIGFE 433 (464)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe-----------eehhHH
Confidence 999988888888777777766666665543 467888899999999999999999998 557999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy6455 194 LFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~ 213 (249)
|...+.++..++-..+...+
T Consensus 434 wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 434 WLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99888888887776665443
No 222
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.86 E-value=7.9e-08 Score=79.03 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=97.9
Q ss_pred cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc-----hhHHHHH-HHHHHHHHHHHHHhh-----h--------
Q psy6455 54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG-----RKITLIG-ALLVDGLCGIASSVA-----Q-------- 114 (249)
Q Consensus 54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G-----rr~~~~~-~~~~~~i~~~~~~~~-----~-------- 114 (249)
+..|++++....+.+.....+.. ...+.+|+.||+.+ ||..+++ |.++...+..+..++ .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 34678888888888888887665 56999999999999 8887775 455555554444331 2
Q ss_pred H-H--HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 115 Y-Y--GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 115 ~-~--~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
. . ....+..++.|+|.+...+...++++|..|+|+|+++.++......+|.+++..+.+.+.+.+
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~ 152 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF 152 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 1 1 234556688899999999999999999999999999999988888899999999988887543
No 223
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.85 E-value=1.6e-07 Score=81.89 Aligned_cols=190 Identities=13% Similarity=0.089 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc-cCCCC---cchhhHHHHhHHHHHHHHHHHHhhhhhcch-hHHHHHHHHHH
Q psy6455 29 LVIFGGLLYAYAAISITVLSFVLPSAQCD-FGMTS---SDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KITLIGALLVD 103 (249)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~---~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~ 103 (249)
.+....+..++.++.++....+.|..... ++-+. ...++....+.++..+++.+.|.+..+++| |+.++++.++.
T Consensus 311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ 390 (599)
T PF06609_consen 311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM 390 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 34444455555666666666666664333 44443 357888889999999999999999998887 44556777776
Q ss_pred HHHHHHHHhh--hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Q psy6455 104 GLCGIASSVA--QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL- 180 (249)
Q Consensus 104 ~i~~~~~~~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~- 180 (249)
.++.-.++.. +|....+...++.|++.|..........+-..|++.-+.+.++......+|+.+|..+..-+.....
T Consensus 391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~ 470 (599)
T PF06609_consen 391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLP 470 (599)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 6554444432 3445556778899999998888888888888999999999999999988888888776544432110
Q ss_pred -------------------------------ccc-----Ccc--------------cccchhHHHHHHHHHHHHHHHHHh
Q psy6455 181 -------------------------------RIE-----TPY--------------FLYSSWNLFVTLVSVPSILLALWL 210 (249)
Q Consensus 181 -------------------------------~~~-----~~~--------------~~~~~w~~~~~~~~~~~~~~~~~~ 210 (249)
..+ .+. .-..++|++|+....+..++.++.
T Consensus 471 ~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa 550 (599)
T PF06609_consen 471 KELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAA 550 (599)
T ss_pred HhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 011368899999999999999998
Q ss_pred hcccCChh
Q psy6455 211 TRFPESPK 218 (249)
Q Consensus 211 ~~~~~~~~ 218 (249)
+++++..+
T Consensus 551 ~fl~d~~~ 558 (599)
T PF06609_consen 551 LFLGDIDK 558 (599)
T ss_pred HHcCChHH
Confidence 88877544
No 224
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.85 E-value=1.7e-07 Score=83.19 Aligned_cols=155 Identities=12% Similarity=-0.002 Sum_probs=120.5
Q ss_pred cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHH
Q psy6455 54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIASSVAQ--------YYGVFLALRF 124 (249)
Q Consensus 54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~--------~~~~l~~~~~ 124 (249)
+.+.+|.+.+.+..+...+....-+..+++|+++|+ +||++.++++.++..++..+.++.. .....+++..
T Consensus 14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa 93 (654)
T TIGR00926 14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA 93 (654)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence 334588888888888888888888999999999996 6999999999999999888776542 1233566777
Q ss_pred HHHhhhcccccccccccccccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455 125 INGFAVTGTLGICFPYLGEFQPTA---YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV 201 (249)
Q Consensus 125 l~G~~~g~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~ 201 (249)
+..+|.|+.-+...+...|.++++ +|-....++..+.++|+.+++.+.+++.+..+ .++++.+|...|.+.++
T Consensus 94 Lia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~----~fg~~~~~~~aF~i~~i 169 (654)
T TIGR00926 94 LIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVG----CFGCQDCYPLAFGVPAI 169 (654)
T ss_pred HHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccccCcchHHHHHHHHH
Confidence 888899999999999999998754 36777888888999999999999888852210 01123579999999998
Q ss_pred HHHHHHHHhhc
Q psy6455 202 PSILLALWLTR 212 (249)
Q Consensus 202 ~~~~~~~~~~~ 212 (249)
.++++.++...
T Consensus 170 ~m~ia~lvf~~ 180 (654)
T TIGR00926 170 LMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHH
Confidence 88888776443
No 225
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.84 E-value=1.2e-07 Score=81.94 Aligned_cols=147 Identities=9% Similarity=0.004 Sum_probs=106.0
Q ss_pred hhhHHHHhHHHHHHHHHHHHhhhhhcchhHH-------HHHHHHHHHHHHHHHH-----hh-----hHHHHHHHHHHHHH
Q psy6455 65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKIT-------LIGALLVDGLCGIASS-----VA-----QYYGVFLALRFING 127 (249)
Q Consensus 65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~-------~~~~~~~~~i~~~~~~-----~~-----~~~~~l~~~~~l~G 127 (249)
.+++.+...+...+.+++.+++.||+++|+. +.+|.++.+++.+... +. .+.++++...++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 3566666777788999999999999999973 6677777766654321 11 35677888899999
Q ss_pred hhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHH
Q psy6455 128 FAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLA 207 (249)
Q Consensus 128 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 207 (249)
+|.+...+....++.+..|++.++.++++++....+|..++..++.......... +.......+.+.|...++..++..
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~ 469 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNIT-DPLETLPVYTNVFGKIGLVTLGVA 469 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988887663111000 000011135566777776666665
Q ss_pred HHhhc
Q psy6455 208 LWLTR 212 (249)
Q Consensus 208 ~~~~~ 212 (249)
++.+.
T Consensus 470 v~~~~ 474 (489)
T PRK10207 470 VVMAL 474 (489)
T ss_pred HHHHH
Confidence 55443
No 226
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.83 E-value=5.7e-12 Score=107.61 Aligned_cols=161 Identities=16% Similarity=0.086 Sum_probs=103.8
Q ss_pred HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH--h---hhH----
Q psy6455 45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS--V---AQY---- 115 (249)
Q Consensus 45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~---~~~---- 115 (249)
.....+.+.+.++.+.+.. -.......+...++.++...+.||+|||++++.+.++.+++.+.+. . .++
T Consensus 270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T PF00083_consen 270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW 347 (451)
T ss_pred ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3445566777777777766 2333344455667777778999999999999999988888777664 1 111
Q ss_pred HHHHHHHHHHHHhhhc-ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHH
Q psy6455 116 YGVFLALRFINGFAVT-GTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNL 194 (249)
Q Consensus 116 ~~~l~~~~~l~G~~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~ 194 (249)
-...++.-.+..++.+ +..+....+..|.+|++.|.++.++......++..+++.+...+.+. .+-..
T Consensus 348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-----------~~~~~ 416 (451)
T PF00083_consen 348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-----------LGGWG 416 (451)
T ss_pred ccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------ccccc
Confidence 1111222222222222 34566668899999999999999998888788888888877666522 23123
Q ss_pred HHHHHHHHHHHHH-HHhhcccCChh
Q psy6455 195 FVTLVSVPSILLA-LWLTRFPESPK 218 (249)
Q Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~ 218 (249)
.+.+.+++.++.. +..+++||+..
T Consensus 417 ~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 417 VFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cchhhHHHHHHHHhheeEEEeeCCC
Confidence 4444444444444 44666899853
No 227
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.82 E-value=1.7e-08 Score=64.58 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455 40 AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVF 119 (249)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l 119 (249)
.+.....+.+.+|.+.+|.++|.++.+++.+..++|+.+|++...++.++..+++.+..+++...+..+.+++.++.+.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 35667788899999999999999999999999999999999999999999899999999999999999999998877654
No 228
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.76 E-value=5.8e-08 Score=79.39 Aligned_cols=150 Identities=14% Similarity=0.076 Sum_probs=112.7
Q ss_pred HHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6455 44 ITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLAL 122 (249)
Q Consensus 44 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 122 (249)
......+++.+..+ .|.+..+.+...+.+..+.++|..++.++..|+...|.+.+..++..+.++...++++... +.+
T Consensus 252 Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~-~~~ 330 (422)
T COG0738 252 EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA-LYA 330 (422)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH-HHH
Confidence 33344444554444 8889999999999999999999999999999999999999999888888888888888554 455
Q ss_pred HHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHH
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVP 202 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~ 202 (249)
.++.|+..+..+|...+...+..+ ++ ....|..-....+|+++.|.+.|++.+. .+-...+.....+
T Consensus 331 l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~-----------~g~~~~~~~~pll 397 (422)
T COG0738 331 LFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADM-----------FGIQLTFLIVPLL 397 (422)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHh-----------hhhHHHHHHHHHH
Confidence 667888899999999999999998 33 3334444444567888999999999843 4555555544444
Q ss_pred HHHHH
Q psy6455 203 SILLA 207 (249)
Q Consensus 203 ~~~~~ 207 (249)
+.+..
T Consensus 398 c~lyV 402 (422)
T COG0738 398 CYLYV 402 (422)
T ss_pred HHHHH
Confidence 43333
No 229
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.69 E-value=1.6e-06 Score=74.29 Aligned_cols=143 Identities=13% Similarity=-0.028 Sum_probs=110.7
Q ss_pred hhHHHHhHHHHHHHHHHHHhhhhhcc-hhHHHHHHHHHHHHHHHHHHhhhH---------------------HHHHHHHH
Q psy6455 66 GWLNAAPMLGMVFGSYFWGCLADTQG-RKITLIGALLVDGLCGIASSVAQY---------------------YGVFLALR 123 (249)
Q Consensus 66 ~~~~~~~~i~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~~~~---------------------~~~l~~~~ 123 (249)
.+....+++...+.+++..++.+|+| ||++..++.++.+++.+...+..+ .+..++..
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 34555566666677888899999999 477889998888888887765443 36677788
Q ss_pred HHHHhhhcccccccccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455 124 FINGFAVTGTLGICFPYLGEFQPTA--YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV 201 (249)
Q Consensus 124 ~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~ 201 (249)
.+.|+..+..+..-++++++..+++ +.|..+|++|.+..+.+++..+..+.+.+..+ .+-.+.+.+.++
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g---------~~~~~~~~~~gv 458 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG---------GGNLPAFVVGAV 458 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC---------CCCeeHHHHHHH
Confidence 8999999999999999999999954 45999999999999999999988777654431 134567888888
Q ss_pred HHHHHHHHhhc-ccCCh
Q psy6455 202 PSILLALWLTR-FPESP 217 (249)
Q Consensus 202 ~~~~~~~~~~~-~~~~~ 217 (249)
.++++.+..++ +|+.+
T Consensus 459 ~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 459 AAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 88888877544 56543
No 230
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.67 E-value=1.7e-06 Score=62.65 Aligned_cols=117 Identities=9% Similarity=0.026 Sum_probs=95.7
Q ss_pred CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccc
Q psy6455 59 GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICF 138 (249)
Q Consensus 59 ~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~ 138 (249)
++++..--.-.++.+....+..++.+.+.+++|.|+.++++.+...+-... .+-++.+.++.+-.+.|++.+...+...
T Consensus 33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQG 111 (156)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence 344444444556667778888899999999999999999999988865443 3556778889999999999999999999
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 139 PYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 139 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
.++.+..+++.|++..+++-.....+.++|.++.-.+.
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888887766553
No 231
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.66 E-value=3.1e-06 Score=72.71 Aligned_cols=151 Identities=16% Similarity=0.078 Sum_probs=104.8
Q ss_pred hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHH-HHHHHHHHHHHHhh-h-HHHHHHHHHHHHHhhhccccccccccc
Q psy6455 65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGA-LLVDGLCGIASSVA-Q-YYGVFLALRFINGFAVTGTLGICFPYL 141 (249)
Q Consensus 65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~-~~~~~i~~~~~~~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~ 141 (249)
.++..++..+..++..|+.|.++|+-|+||.++.. ..+..++..++.+. + +++...+..++.-++.+......++++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888889999999999999999988766654 44444555555553 3 344444555555677888889999999
Q ss_pred ccccccchh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455 142 GEFQPTAYR--------------------------EKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF 195 (249)
Q Consensus 142 ~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~ 195 (249)
.|+.+++.+ ++..+.-.....+|+++.-.+.-.+....... ..+..+.|..
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~---~~~~~~~r~~ 228 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST---ASNTWAIRVA 228 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---cccchhhhHH
Confidence 999999888 78888866677788877776655553222111 1123456888
Q ss_pred HHHHHHHHHHHHHH-hhcccCChh
Q psy6455 196 VTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 196 ~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
+.+.++.-++..+. .+++||.|+
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC
Confidence 88888777666665 455677654
No 232
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.63 E-value=1.7e-07 Score=76.25 Aligned_cols=101 Identities=20% Similarity=0.130 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-----Ccc
Q psy6455 112 VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE-----TPY 186 (249)
Q Consensus 112 ~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~-----~~~ 186 (249)
...+++.++++.++.|.|.+..++..++++++..++|++++.+++.+..+++|..++|.+++.+........ ...
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 457899999999999999999999999999999999999999999999999999999999998874321100 000
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 187 FLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 187 ~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
.+...|+++|++.+.+.++..+.+.+
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~ 111 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAF 111 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01257999999776665555554434
No 233
>KOG4686|consensus
Probab=98.56 E-value=1.7e-08 Score=78.81 Aligned_cols=150 Identities=15% Similarity=0.007 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHH
Q psy6455 28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLC 106 (249)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~ 106 (249)
..++.+++..+...+++........++..+.+++.++..++.+.++.-..+-..++|++.|| +|.|..-++-.++..++
T Consensus 44 m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 44 MALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 33444555555555666555666677778888888899999999999999999999999996 67776555555555556
Q ss_pred HHHHH---hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 107 GIASS---VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 107 ~~~~~---~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
-++.+ ..+.+|.+.++|++.|+|.-......+.|..-++..++.+.++|+......+|+.+--.+.+++.+
T Consensus 124 qliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 124 QLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred HHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 55543 467899999999999998777778889999999999999999999888888888776666666653
No 234
>KOG2533|consensus
Probab=98.54 E-value=1.4e-07 Score=80.95 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh----cchhHHHHHHHHHHH
Q psy6455 30 VIFGGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKITLIGALLVDG 104 (249)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr----~Grr~~~~~~~~~~~ 104 (249)
+....++.++.....+.....+|.+.++ .|.|..++..+.+.+.++.+++.+++|.++|| ..+|..+.....+..
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4455566666677777788888887777 67999999999999999999999999999999 677777776666655
Q ss_pred HHH-HHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHH-HHHHHHHHHHHHHHH
Q psy6455 105 LCG-IASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLC-WLEMFWTGGIIVLPA 170 (249)
Q Consensus 105 i~~-~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~g~~~~~~ 170 (249)
+.. ......++........+....+.+...+......++....+.|..... ....+.+.++.++|.
T Consensus 355 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~ 422 (495)
T KOG2533|consen 355 IIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ 422 (495)
T ss_pred HHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence 544 444333333333333444444556667777788888876665544333 344444444444433
No 235
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.54 E-value=4.8e-07 Score=57.36 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q psy6455 37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV 102 (249)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (249)
++..........+++|.+.++.|+|..++|.+.++..+...++.+++|.++||+++++..+....+
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 333444566677888888899999999999999999999999999999999999999887766544
No 236
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.48 E-value=1.4e-06 Score=74.23 Aligned_cols=153 Identities=13% Similarity=0.105 Sum_probs=112.1
Q ss_pred hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc----hhH-HHHHHHHHHHHHHHHHHhh----hHHHHH
Q psy6455 49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG----RKI-TLIGALLVDGLCGIASSVA----QYYGVF 119 (249)
Q Consensus 49 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G----rr~-~~~~~~~~~~i~~~~~~~~----~~~~~l 119 (249)
...|.+.+++|+++++...+.+...+.. ..-++.|.++|.+- ||| -++++.++..++.+.++.. .+....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 3455677889999999988888877766 55789999999773 444 4555666665555544443 245666
Q ss_pred HHHHHHHHhhhccccccccccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455 120 LALRFINGFAVTGTLGICFPYLGEFQ--PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT 197 (249)
Q Consensus 120 ~~~~~l~G~~~g~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~ 197 (249)
.+..++..+|........-+.+.|.. .++.|+...+.......+|.+++..++|.+. +..+++..|.
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~-----------~~~~~~~~f~ 158 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLL-----------DSFGPQGVFL 158 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-----------hcCCCeEEeh
Confidence 66777788888888888888888887 3334788888888889999999999999887 3457777888
Q ss_pred HHHHHHHHHHHHhhcc
Q psy6455 198 LVSVPSILLALWLTRF 213 (249)
Q Consensus 198 ~~~~~~~~~~~~~~~~ 213 (249)
+.+++.++..+..+++
T Consensus 159 i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 159 ISAALPLLMLIVALFL 174 (433)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8877777666554444
No 237
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.48 E-value=3.9e-06 Score=69.81 Aligned_cols=157 Identities=13% Similarity=-0.003 Sum_probs=120.2
Q ss_pred cccccc-cCCCCcchh-hHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy6455 52 PSAQCD-FGMTSSDKG-WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129 (249)
Q Consensus 52 ~~~~~~-~~~s~~~~~-~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~ 129 (249)
|++.+. .|++..++. -+.=...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..+..|++
T Consensus 28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~ 107 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA 107 (412)
T ss_pred HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 333443 677766653 233333345677888999999999999999999999999989999999999999999999998
Q ss_pred hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455 130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209 (249)
Q Consensus 130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 209 (249)
.+. .....+|+-...|+++--++.+......-+|..++..++-.+... +..+++...++......++.++
T Consensus 108 ~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~---------~~~sy~~L~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 108 TAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF---------GGVSYFQLNYISLASVSLALLI 177 (412)
T ss_pred HHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHH
Confidence 665 667778888888998888888888887777878887777777643 2346777777777766777777
Q ss_pred hhcccCChh
Q psy6455 210 LTRFPESPK 218 (249)
Q Consensus 210 ~~~~~~~~~ 218 (249)
.+++|..++
T Consensus 178 ~~fLP~~~~ 186 (412)
T PF01770_consen 178 ALFLPMPKR 186 (412)
T ss_pred HHHcCCCCc
Confidence 777776543
No 238
>KOG0255|consensus
Probab=98.41 E-value=7.9e-06 Score=71.35 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=96.6
Q ss_pred HHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHhhhcccccccccccccccc
Q psy6455 70 AAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYG---VFLALRFINGFAVTGTLGICFPYLGEFQP 146 (249)
Q Consensus 70 ~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~---~l~~~~~l~G~~~g~~~~~~~~~~~~~~~ 146 (249)
..............+.+.|++|||.....+.++..++.+...+..+.. ...+...+..++.+..+.....+.+|.+|
T Consensus 357 ~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p 436 (521)
T KOG0255|consen 357 TLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIP 436 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333334555556668999999999999999999999999888765432 34444455555556666667899999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455 147 TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 147 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
+..|..+.+.......+|.+++|.+........ ..+ .+.+.+....+..++ ..++||+..
T Consensus 437 t~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~----------~~~--~~~~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 437 TVVRNTAVGAISAAARLGSILAPLFPLLLRQMF----------PLL--GLILFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------ccc--hHHHHHHHHHHHHHHHHhcCcccCC
Confidence 999999999999999999999999876654211 112 222234444444433 477888754
No 239
>KOG2816|consensus
Probab=98.41 E-value=6e-06 Score=70.43 Aligned_cols=124 Identities=15% Similarity=0.037 Sum_probs=110.2
Q ss_pred cccccCCCCcchhhHHHHhHHHHHHHHHHHH-hhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcc
Q psy6455 54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWG-CLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTG 132 (249)
Q Consensus 54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g-~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~ 132 (249)
....++++..+.+...+...+...+++.+.. .+...+|-|+++..|+....+.....+++.+.|+......+.++. +.
T Consensus 268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~ 346 (463)
T KOG2816|consen 268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GI 346 (463)
T ss_pred EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cc
Confidence 3445999999999999998888889988777 788889999999999999999999999999999988888888775 67
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455 133 TLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 133 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 178 (249)
..+...+.++.+.+++++|+..++.+....+..+++|.+-+.+...
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 7899999999999999999999999999999999999988777543
No 240
>KOG0637|consensus
Probab=98.36 E-value=3.4e-07 Score=75.97 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh----hcchhHHHHHH-HHHHHHH
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKITLIGA-LLVDGLC 106 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~ 106 (249)
......+...+.+..=..+.+.+.++.|++....+.+-...-+...+.+++.|..+| |+||||.++.. .+..+++
T Consensus 36 ~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~ 115 (498)
T KOG0637|consen 36 SVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVS 115 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHH
Confidence 333344444555555556777788899999999998888888889999999999999 68999977765 4555666
Q ss_pred HHHHHhhhHH-----------------HHHHHHHHHHHhhhcccccccccccccccccchhHH-HHHHHHHHHHHHHHHH
Q psy6455 107 GIASSVAQYY-----------------GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREK-VLCWLEMFWTGGIIVL 168 (249)
Q Consensus 107 ~~~~~~~~~~-----------------~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~ 168 (249)
.+++.++.++ ..++++.-+.=++....+.+.-+++.|....+++.+ +.+.+....++|+.+|
T Consensus 116 l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG 195 (498)
T KOG0637|consen 116 LFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLG 195 (498)
T ss_pred HhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence 6666665433 344445555556666788889999999998887777 9999999999999999
Q ss_pred HHHHHHH
Q psy6455 169 PAVAWLL 175 (249)
Q Consensus 169 ~~l~~~l 175 (249)
..++++.
T Consensus 196 Y~~g~y~ 202 (498)
T KOG0637|consen 196 YALGSYL 202 (498)
T ss_pred eeccccc
Confidence 8887644
No 241
>PTZ00207 hypothetical protein; Provisional
Probab=98.34 E-value=8.7e-06 Score=71.40 Aligned_cols=158 Identities=11% Similarity=-0.099 Sum_probs=107.5
Q ss_pred ccccccc-CCCCcc--hhhHHHHhHHHHHHHHHHHHhhhhh---------cchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455 52 PSAQCDF-GMTSSD--KGWLNAAPMLGMVFGSYFWGCLADT---------QGRKITLIGALLVDGLCGIASSVAQYYGVF 119 (249)
Q Consensus 52 ~~~~~~~-~~s~~~--~~~~~~~~~i~~~i~~~~~g~l~dr---------~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l 119 (249)
.++.+.+ |.+.+. .....+.++++..+|.+..|.++.. +.|--.+.+..+ ..++.+++.+.-....+
T Consensus 377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L 455 (591)
T PTZ00207 377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAAL 455 (591)
T ss_pred HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHh
Confidence 3455666 653322 2337889999999999999988722 222222333333 55555555544333678
Q ss_pred HHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccc----CcccccchhHH
Q psy6455 120 LALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVL-PAVAWLLIPLNLRIE----TPYFLYSSWNL 194 (249)
Q Consensus 120 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~l~~~l~~~~~~~~----~~~~~~~~w~~ 194 (249)
.+..++.|++.|...+.....++|+|. ++-|+-..+......+|+.+- -.+.|.+.+...... |. ...=++.
T Consensus 456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~--G~~C~~~ 532 (591)
T PTZ00207 456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCT--ERVCVVM 532 (591)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeC--CceeeHh
Confidence 999999999999999999999999999 888998888888888888776 556777764332110 10 1112678
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy6455 195 FVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~ 213 (249)
.|++.+.+++++.+....+
T Consensus 533 ~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 533 PLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred HHHHHHHHHHHHHHHHhhe
Confidence 8999988888888774443
No 242
>KOG2563|consensus
Probab=98.22 E-value=1.8e-05 Score=65.95 Aligned_cols=177 Identities=18% Similarity=0.089 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch-hHHHHHHHHHHHHHHHHH
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KITLIGALLVDGLCGIAS 110 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~ 110 (249)
+..+++......++.+...+....+.-|.+....|++.....++.++++.+.|.+.||... |.+.++......++....
T Consensus 270 il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l 349 (480)
T KOG2563|consen 270 ILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLML 349 (480)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444555555554555667777899999999999999999999999999865 556666666666653222
Q ss_pred -Hhh---hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455 111 -SVA---QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186 (249)
Q Consensus 111 -~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 186 (249)
.+. ...+.+...-.+.|++..+.+|+..-+-.|..-|..=+...|+.+....+-+++-..+-+...+..
T Consensus 350 ~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~------- 422 (480)
T KOG2563|consen 350 LTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL------- 422 (480)
T ss_pred HHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc-------
Confidence 221 234455666677888888889999999999876666667777776665555555556655554332
Q ss_pred cccch-hHHHHHHHHHHHHHHHHHhhcccCC
Q psy6455 187 FLYSS-WNLFVTLVSVPSILLALWLTRFPES 216 (249)
Q Consensus 187 ~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~ 216 (249)
...+ |...-+......++.+.+..+++++
T Consensus 423 -~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 423 -GPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred -CCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 1112 3333444445555555555555543
No 243
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.22 E-value=0.00043 Score=59.33 Aligned_cols=151 Identities=7% Similarity=-0.051 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHH-HHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455 27 YILVIFGGLLYAYAAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFG-SYFWGCLADTQGRKITLIGALLVDG 104 (249)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (249)
++.++.+.+..++..+.+++.-+.-..+.- ..+.+.+...++-+...+...+. .++.+++++|++|++++-+....+.
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~ 85 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFL 85 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHH
Confidence 344455555556656666655554433321 12334457788888777776666 8999999999999998887766666
Q ss_pred HHHHHHHhh--h-----------------------------HHHHHHHHHHHHHhhhccccc-ccccccccccccchhHH
Q psy6455 105 LCGIASSVA--Q-----------------------------YYGVFLALRFINGFAVTGTLG-ICFPYLGEFQPTAYREK 152 (249)
Q Consensus 105 i~~~~~~~~--~-----------------------------~~~~l~~~~~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~ 152 (249)
....+..+. + +.|...+..+...+-.....+ .-+.+++|.+..++-.+
T Consensus 86 ~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakR 165 (472)
T TIGR00769 86 GFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKR 165 (472)
T ss_pred HHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 555544432 0 012222333344443333344 67889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 153 VLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 153 ~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
..+++..+.++|..+++.+..++.+
T Consensus 166 fy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 166 FYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888763
No 244
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.12 E-value=0.00028 Score=60.92 Aligned_cols=143 Identities=4% Similarity=-0.040 Sum_probs=96.4
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcch--hH-----HHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHH
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGR--KI-----TLIGALLVDGLCGIASSVA---------QYYGVFLALRFING 127 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr--r~-----~~~~~~~~~~i~~~~~~~~---------~~~~~l~~~~~l~G 127 (249)
..+|..+...+...+.+|+.+++=.|.+| |. =+.+|+++.+++.+.+.+. .+.+++++..++.+
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 36788888888888888888887666633 21 1556777777776555431 25677889999999
Q ss_pred hhhcccccccccccccccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccccCc-ccccchhHHHHHHHHHHHHH
Q psy6455 128 FAVTGTLGICFPYLGEFQPTAYREKVLCWLEMF-WTGGIIVLPAVAWLLIPLNLRIETP-YFLYSSWNLFVTLVSVPSIL 205 (249)
Q Consensus 128 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~~l~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~ 205 (249)
+|.-...|+..+.+++..|++.|+..+|.+... ..+|..++..+++...........+ ..+...+...|...+...++
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 468 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA 468 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998653 3567666666665542111000000 00112456667776666555
Q ss_pred H
Q psy6455 206 L 206 (249)
Q Consensus 206 ~ 206 (249)
.
T Consensus 469 ~ 469 (493)
T PRK15462 469 C 469 (493)
T ss_pred H
Confidence 5
No 245
>KOG2615|consensus
Probab=98.08 E-value=3.5e-05 Score=63.02 Aligned_cols=147 Identities=15% Similarity=0.057 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHHHHH
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG--RKITLIGALLVDGLCGI 108 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~ 108 (249)
...+..+........+....+.+ ...+|.++.+.|-+.+...+++.+.+....+..||.. -+-.+..+..+..-...
T Consensus 265 i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~l 344 (451)
T KOG2615|consen 265 IFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFL 344 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHH
Confidence 33344444444444444444444 3569999999999999999999999999999999887 66677777777766667
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455 109 ASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 109 ~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 178 (249)
+.+.++....+..+..+..++.+...+....++....|.++||...|+......++-.+||.++|.+...
T Consensus 345 lls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 345 LLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 7777888888888889999988888888889999999999999999999999999999999999888643
No 246
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.95 E-value=0.00015 Score=60.23 Aligned_cols=154 Identities=11% Similarity=-0.011 Sum_probs=102.0
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHH-HHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhhhccccccccc
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG-ALLVDGLCGIASSVAQY---YGVFLALRFINGFAVTGTLGICFP 139 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~~~---~~~l~~~~~l~G~~~g~~~~~~~~ 139 (249)
..+...++..+..++-+|+.|..+|+.|+||..+. ...+..++.+.+.+.++ ++..++...+..++.........+
T Consensus 59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds 138 (438)
T COG2270 59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence 45677788888889999999999999998876554 45555556666666543 445556667888888888999999
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHH--HHHhc-ccccc----cCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 140 YLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA--WLLIP-LNLRI----ETPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 140 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~l~~-~~~~~----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
++.+..++++.++..++-.....+|+.+.-++. ..+.. ..... .-+..+...-|..+.+.++..++..+..++
T Consensus 139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence 999999998888887775444555665554432 11111 00000 001113345688888888877777766444
Q ss_pred -ccCCh
Q psy6455 213 -FPESP 217 (249)
Q Consensus 213 -~~~~~ 217 (249)
.++.+
T Consensus 219 ~v~~~~ 224 (438)
T COG2270 219 NVHDAE 224 (438)
T ss_pred cccccc
Confidence 45543
No 247
>KOG1237|consensus
Probab=97.91 E-value=0.0006 Score=59.91 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=118.0
Q ss_pred HHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHHHHHHHhhhH----------
Q psy6455 47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIASSVAQY---------- 115 (249)
Q Consensus 47 ~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~---------- 115 (249)
....+.++..++|.+...+.-..+.+.-......++++.++|- +||-+.+.++.++..++.++..++..
T Consensus 57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 3455666777888887777777777777778888999999996 48999999999988888665443211
Q ss_pred ---------------HHHHHHHHHHHHhhhcccccccccccccccc---cc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 116 ---------------YGVFLALRFINGFAVTGTLGICFPYLGEFQP---TA---YREKVLCWLEMFWTGGIIVLPAVAWL 174 (249)
Q Consensus 116 ---------------~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~---~~---~r~~~~~~~~~~~~~g~~~~~~l~~~ 174 (249)
...+..+..+..+|.|+.-+...++-+|-++ ++ .+...+.++....++|..++..+.-+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 1355666677788999999999999999998 32 22366777888889999999888877
Q ss_pred HhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 175 LIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 175 l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
+- ++.+|.+.|.+..+..+++.++.+.
T Consensus 217 iq-----------~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 217 IQ-----------DNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred hh-----------hcccceeeccHHHHHHHHHHHHHHc
Confidence 75 4569999998888877777666443
No 248
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.87 E-value=6.3e-05 Score=62.88 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHHhhhcccccccccccccccccc---hhHHHHHHHHHHH
Q psy6455 94 ITLIGALLVDGLCGIASSVAQ---------YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA---YREKVLCWLEMFW 161 (249)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~~~---------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~ 161 (249)
|.++++.++..+|.++..++. +.+.+.++.++.++|.|+.=+...++.+|.++++ +|.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567788888888887744432 2367888999999999999999999999999876 4677777889999
Q ss_pred HHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 162 TGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 162 ~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
++|..+++.+.+++. ++.+|.+.|.+.++..+++.+..+.-
T Consensus 82 n~G~~~~~~~~~~i~-----------~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ-----------QNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHH-----------HCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhc-----------cccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999998886 55799999999998888887765543
No 249
>KOG4332|consensus
Probab=97.84 E-value=4.5e-05 Score=59.67 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=76.9
Q ss_pred HHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy6455 44 ITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALR 123 (249)
Q Consensus 44 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 123 (249)
...-.+++-++.++++....+++.+.....-..++...+.|.++|+-|||+..+.-.+-..++++ .-.++.+-.++++|
T Consensus 53 DWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR 131 (454)
T KOG4332|consen 53 DWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGR 131 (454)
T ss_pred hhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehh
Confidence 34455667677888999999999888887778888999999999999999976655544444432 33467788899999
Q ss_pred HHHHhhhccccccccc-cccccc
Q psy6455 124 FINGFAVTGTLGICFP-YLGEFQ 145 (249)
Q Consensus 124 ~l~G~~~g~~~~~~~~-~~~~~~ 145 (249)
.+.|+.....+..--+ +++|..
T Consensus 132 ~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 132 VLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhh
Confidence 9999988877766655 455655
No 250
>KOG3574|consensus
Probab=97.81 E-value=0.00023 Score=58.33 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh-----hcchhHHHHH-H
Q psy6455 26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD-----TQGRKITLIG-A 99 (249)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d-----r~Grr~~~~~-~ 99 (249)
.++.+..+.+.+..++....... .+|.+.+.-|+|-++.+....++. -.---++|.++.| |+||||..++ +
T Consensus 29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~ 105 (510)
T KOG3574|consen 29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPC 105 (510)
T ss_pred hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeeh
Confidence 34456666778888888888877 889988888888777665544432 1233468888888 9999987654 2
Q ss_pred HHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q psy6455 100 LLVDGLCGIASSV-----------AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVL 168 (249)
Q Consensus 100 ~~~~~i~~~~~~~-----------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 168 (249)
..+....+...+. .++...+....++.-+..+.--..+=.+.-.+.++++-|.+......+...|..++
T Consensus 106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~ 185 (510)
T KOG3574|consen 106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG 185 (510)
T ss_pred HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence 2333333333332 12333444455555665554445555677777888887777666666666666555
Q ss_pred HHH
Q psy6455 169 PAV 171 (249)
Q Consensus 169 ~~l 171 (249)
..+
T Consensus 186 ~~i 188 (510)
T KOG3574|consen 186 NVV 188 (510)
T ss_pred cce
Confidence 443
No 251
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.81 E-value=0.00066 Score=60.77 Aligned_cols=150 Identities=16% Similarity=0.064 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHH
Q psy6455 30 VIFGGLLYAYAAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQG--RKITLIGALLVDGL 105 (249)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i 105 (249)
++...+..+........+..++|.+.+ ++|.++.+++++.....+ +..++.+++|+++||++ .|+.+.++.++..+
T Consensus 332 f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~ 411 (633)
T TIGR00805 332 YMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTL 411 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHH
Confidence 333444444445555556666776554 599999999999988776 67899999999999998 45666666666555
Q ss_pred HHHHHH------------------------------h-------------------------------------------
Q psy6455 106 CGIASS------------------------------V------------------------------------------- 112 (249)
Q Consensus 106 ~~~~~~------------------------------~------------------------------------------- 112 (249)
+.++.. -
T Consensus 412 ~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y 491 (633)
T TIGR00805 412 SYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVY 491 (633)
T ss_pred HHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCccee
Confidence 533311 0
Q ss_pred ------------------h----hH-HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHH-HHHHHHHHHH
Q psy6455 113 ------------------A----QY-YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLE-MFWTGGIIVL 168 (249)
Q Consensus 113 ------------------~----~~-~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~ 168 (249)
. ++ +..+++..++..+..+....+....+-...|+++|..++|+.. ....+|.+-+
T Consensus 492 ~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~ 571 (633)
T TIGR00805 492 TNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPA 571 (633)
T ss_pred cccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCCh
Confidence 0 01 2233344444445445556666677788899999999999955 4567888999
Q ss_pred HHHHHHHhccc
Q psy6455 169 PAVAWLLIPLN 179 (249)
Q Consensus 169 ~~l~~~l~~~~ 179 (249)
|++-|++++..
T Consensus 572 pi~fG~~iD~s 582 (633)
T TIGR00805 572 PILFGLLIDVS 582 (633)
T ss_pred hHHHhhhhhch
Confidence 99999998654
No 252
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.70 E-value=0.00024 Score=60.60 Aligned_cols=154 Identities=15% Similarity=0.094 Sum_probs=110.2
Q ss_pred CCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHhh
Q psy6455 60 MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV----------AQYYGVFLALRFINGFA 129 (249)
Q Consensus 60 ~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----------~~~~~~l~~~~~l~G~~ 129 (249)
.|+...+.+..+..++..+|..+..++.-+..-|+++.++.++.++..+.-.. .++.+..+..-++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 77778888888888999999999988888888899998888877766553221 11222233344555555
Q ss_pred hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455 130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209 (249)
Q Consensus 130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 209 (249)
.+..+-+...+++|++|+..-|+..++.....++|..++..++..+.+......+ +..+-.+..++..+..++...+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~---~f~~l~~lili~~~~~ll~l~l 408 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRD---DFSNLWLLILICSVIQLLPLPL 408 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---cccchHHHHHHHHHHHHHHHHH
Confidence 5666667778999999999999999999999999999999999888765432221 2334445566666666666666
Q ss_pred hhcccCC
Q psy6455 210 LTRFPES 216 (249)
Q Consensus 210 ~~~~~~~ 216 (249)
..++|+.
T Consensus 409 l~lLp~~ 415 (433)
T PF03092_consen 409 LFLLPPQ 415 (433)
T ss_pred HHHcCCC
Confidence 6667764
No 253
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.70 E-value=0.0012 Score=55.30 Aligned_cols=111 Identities=16% Similarity=0.069 Sum_probs=80.2
Q ss_pred CCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH--HHH---HHHhhhHHHHHHHHHHHHHhhhccccc
Q psy6455 61 TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL--CGI---ASSVAQYYGVFLALRFINGFAVTGTLG 135 (249)
Q Consensus 61 s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i--~~~---~~~~~~~~~~l~~~~~l~G~~~g~~~~ 135 (249)
..++..+....+.+|..++.--...+ |+ |++.+.+.+-.+- ..+ ..-+.++.|..++.-+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 34566777788877766654432221 33 4444444332222 222 222457888888899999999999999
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 136 ICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 136 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 175 (249)
-....+.|-.++++|..+++..+.+.++|..++.+++-.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888766
No 254
>KOG3098|consensus
Probab=97.66 E-value=0.0028 Score=53.96 Aligned_cols=106 Identities=10% Similarity=-0.014 Sum_probs=89.8
Q ss_pred HHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccc
Q psy6455 69 NAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA 148 (249)
Q Consensus 69 ~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 148 (249)
.++.+....+..++.+.+.|+.|.|+.++++............+. |-+.++++..+.|+|.+..+.....+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 677788889999999999999999999999999888776655544 4667789999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 149 YREKVLCWLEMFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 149 ~r~~~~~~~~~~~~~g~~~~~~l~~~l 175 (249)
.+.+..++.-.....+.++|..+...+
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 999999997777777777776554444
No 255
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.58 E-value=0.00042 Score=57.86 Aligned_cols=132 Identities=11% Similarity=-0.077 Sum_probs=94.3
Q ss_pred hhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccccc
Q psy6455 66 GWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQ 145 (249)
Q Consensus 66 ~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~ 145 (249)
+.+..+-.+-..+.-+++.++.+|+..+.=+..+.++.+++.++.+++++.+.-+++-.+.+++.|........+.+ .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555556667777788889999998766566677788889999999999998889999999998888777766644 55
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 146 PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 146 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
++ ...+-+..+.+.++++|...-..+.... .+.|..+.+...+.++..+.+++
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g----------~s~~~tll~~~~lp~~~~~~~f~ 193 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLG----------LSPRTTLLIMLVLPAIFLLSYFF 193 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhC----------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 53 2466677777777888877665554321 34566777777666666555444
No 256
>KOG3098|consensus
Probab=97.50 E-value=0.0062 Score=51.95 Aligned_cols=140 Identities=14% Similarity=0.184 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHhhcccccc---ccCCCCc-chhhHHHHhHHHHHHHHHHHHhhh---hhcchhHHHHHHHHHHHHHH
Q psy6455 35 LLYAYAAISITVLSFVLPSAQC---DFGMTSS-DKGWLNAAPMLGMVFGSYFWGCLA---DTQGRKITLIGALLVDGLCG 107 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~-~~~~~~~~~~i~~~i~~~~~g~l~---dr~Grr~~~~~~~~~~~i~~ 107 (249)
...+..+.....+....|.-.. ..+.+.. ..+.......++..++..+.+.++ +++||++.+.++.++..++.
T Consensus 247 ~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~ 326 (461)
T KOG3098|consen 247 PFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGF 326 (461)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHH
Confidence 3334444444445545554222 2222222 223333444555556666666666 46789999999988888887
Q ss_pred HHHHhh------------------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy6455 108 IASSVA------------------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLP 169 (249)
Q Consensus 108 ~~~~~~------------------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 169 (249)
++..+. ++.....+.-++.|++-+......+.++.+.. +++|..+.+++-.-..++..++-
T Consensus 327 ~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 327 LLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAF 405 (461)
T ss_pred HHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence 765532 13456677778999999999999999999999 57788888888777777777665
Q ss_pred HHHHHH
Q psy6455 170 AVAWLL 175 (249)
Q Consensus 170 ~l~~~l 175 (249)
......
T Consensus 406 f~~~~~ 411 (461)
T KOG3098|consen 406 FFSPYL 411 (461)
T ss_pred hhhhhh
Confidence 554433
No 257
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.46 E-value=0.0034 Score=53.30 Aligned_cols=128 Identities=12% Similarity=-0.006 Sum_probs=94.6
Q ss_pred HhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh---h---h----HHH
Q psy6455 48 SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV---A---Q----YYG 117 (249)
Q Consensus 48 ~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~---~----~~~ 117 (249)
...+..+...-|+++..+|..-+...+....+.....++.+|+|..|.=+++......+..++.. . + +..
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~ 357 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY 357 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 33444455566999999999999999999999999999999999999888887766655544332 1 1 233
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 175 (249)
.++.+-.+.=+|.=+..-...-++.|..|+++||...+..+...++..++...+.-.+
T Consensus 358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333433555555666778999999999999999998888888888776665433
No 258
>PRK03612 spermidine synthase; Provisional
Probab=97.41 E-value=0.0077 Score=52.65 Aligned_cols=118 Identities=11% Similarity=0.018 Sum_probs=71.0
Q ss_pred ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH---HHHHH----hhhHH-HHHHHHHHHHHh
Q psy6455 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC---GIASS----VAQYY-GVFLALRFINGF 128 (249)
Q Consensus 57 ~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~---~~~~~----~~~~~-~~l~~~~~l~G~ 128 (249)
-+|-+....+.+.+.+..|..+|+.+++++.++.-++.. .+-..+..++ ..+.. +.... ..+....++.++
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 122 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL 122 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777788999999999999999999988744333322 2211111111 11111 11111 122334456678
Q ss_pred hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 129 AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 129 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
..|+..|....+..+... ++-+...|-......+|+++|.++.+++.
T Consensus 123 l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 123 LIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 888877776665554322 22355677777788888888888877765
No 259
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.39 E-value=0.0072 Score=51.52 Aligned_cols=142 Identities=15% Similarity=0.137 Sum_probs=95.5
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchh-------HHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHH
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRK-------ITLIGALLVDGLCGIASSVA----------QYYGVFLALRFIN 126 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~~~~l~ 126 (249)
..+|..+...+...+.+++..++-.+.+++ .=+-++..+...+.++.... .+.++++...+++
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~ 404 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ 404 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 457778888888888888888888875544 22334444444444443322 2578899999999
Q ss_pred HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL 206 (249)
Q Consensus 127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 206 (249)
++|.=...|+..+++....|+.-.+..++.+-.....|..++..+++.-...+ ...+.......|...+...++.
T Consensus 405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~-----~~~~~~~~~~~F~~~g~v~i~~ 479 (498)
T COG3104 405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD-----PAYTAFIEGRVFGTIGVVAIVI 479 (498)
T ss_pred HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccc-----hhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999998899999888777777777766655321100 0002223344566666655555
Q ss_pred HHHh
Q psy6455 207 ALWL 210 (249)
Q Consensus 207 ~~~~ 210 (249)
.+..
T Consensus 480 ~~~~ 483 (498)
T COG3104 480 GILL 483 (498)
T ss_pred HHHH
Confidence 5543
No 260
>KOG1330|consensus
Probab=97.34 E-value=0.00099 Score=56.07 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=74.3
Q ss_pred cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch-------hHHHHHHH----HHHHHHHHHHH-hhhHHHHHHHHHHH
Q psy6455 58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-------KITLIGAL----LVDGLCGIASS-VAQYYGVFLALRFI 125 (249)
Q Consensus 58 ~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-------r~~~~~~~----~~~~i~~~~~~-~~~~~~~l~~~~~l 125 (249)
.|.+..+..+...++..+..+|.+++|.++||+-| .+.--+.. .+.+...++.. +..+...+.+..++
T Consensus 278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~ 357 (493)
T KOG1330|consen 278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFL 357 (493)
T ss_pred hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34455566667777888889999999999998433 22111111 11121111211 12233334445555
Q ss_pred HHhhh-cccccccccccccccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Q psy6455 126 NGFAV-TGTLGICFPYLGEFQPTAYREKVLCWLEMF-WTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 126 ~G~~~-g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~~l~~~ 178 (249)
.|... -...+.......|..|+++|.++.++.... ..+|..-+|.+.|.+.+.
T Consensus 358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 66533 344677778899999999999999996544 456666677677777653
No 261
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=97.22 E-value=0.071 Score=45.62 Aligned_cols=157 Identities=9% Similarity=-0.031 Sum_probs=102.5
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcchhHHHHH
Q psy6455 20 AGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQGRKITLIG 98 (249)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~Grr~~~~~ 98 (249)
.+.++..+..++.+.+..++..+.....-..-..+.-. ..++....++=+..-+ +..+..++.+++.++..+.+++-.
T Consensus 19 wpi~r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~-~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~ 97 (509)
T COG3202 19 WPIRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVT-RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI 97 (509)
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEee-cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 34566667777767777777666666555443333222 2345566677666666 678889999999999999998877
Q ss_pred HHHHHHHHHHHHHhh---------------hH-----------------HHHHHHHHHHHHhhhcccc-ccccccccccc
Q psy6455 99 ALLVDGLCGIASSVA---------------QY-----------------YGVFLALRFINGFAVTGTL-GICFPYLGEFQ 145 (249)
Q Consensus 99 ~~~~~~i~~~~~~~~---------------~~-----------------~~~l~~~~~l~G~~~g~~~-~~~~~~~~~~~ 145 (249)
-...+....+++++. ++ -|...+...+.-+-..... -.-.....|.+
T Consensus 98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit 177 (509)
T COG3202 98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT 177 (509)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666555555431 10 0222222222222112222 24566788999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 146 PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 146 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
..++-.+..++++.+.+++..++..+..++..
T Consensus 178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999888888753
No 262
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=97.18 E-value=0.13 Score=44.57 Aligned_cols=157 Identities=8% Similarity=-0.015 Sum_probs=98.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcchhHHHHH
Q psy6455 20 AGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQGRKITLIG 98 (249)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~Grr~~~~~ 98 (249)
.+..+..++-++.+.+..++..+.+...-..-..+.-+-. +++.+..+=....+ +..+...+..+++++++|++++-+
T Consensus 16 ~pi~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~-gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~ 94 (491)
T PF03219_consen 16 WPIHRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ-GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYI 94 (491)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3445666666777777777777776665555444322211 34444444443333 445667889999999999998776
Q ss_pred HHHHHHHHHHHHHhh---------h----------------------HHHHHHHHHHHHHhhhccccc-ccccccccccc
Q psy6455 99 ALLVDGLCGIASSVA---------Q----------------------YYGVFLALRFINGFAVTGTLG-ICFPYLGEFQP 146 (249)
Q Consensus 99 ~~~~~~i~~~~~~~~---------~----------------------~~~~l~~~~~l~G~~~g~~~~-~~~~~~~~~~~ 146 (249)
....+.....+.++. + +.|...+..+..-+-.....+ .-+.+..|.++
T Consensus 95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt 174 (491)
T PF03219_consen 95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT 174 (491)
T ss_pred HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 655555444433321 0 112222333333332222233 45788999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455 147 TAYREKVLCWLEMFWTGGIIVLPAVAWLLIP 177 (249)
Q Consensus 147 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 177 (249)
.++-.+..+++..+.++|.+++..+..++.+
T Consensus 175 ~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 175 VEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888875
No 263
>KOG2325|consensus
Probab=96.78 E-value=0.0016 Score=55.73 Aligned_cols=179 Identities=10% Similarity=-0.013 Sum_probs=104.5
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHh----HHHHHHHHHHHHhhh-hhcchh
Q psy6455 20 AGYGKFHYILVIFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAP----MLGMVFGSYFWGCLA-DTQGRK 93 (249)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~----~i~~~i~~~~~g~l~-dr~Grr 93 (249)
.+..+..|...+++.+..+...+....+....+. ....++.+.++.-+..+.. .+-.....+..+... -++.+|
T Consensus 254 ~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r 333 (488)
T KOG2325|consen 254 VKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR 333 (488)
T ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3444556666666777777666666554444433 3445777777665544443 322333333333332 333446
Q ss_pred HHHHHHHHHHHHHHHHHHh----h---------------------------hHHHHHHHHH-HHHHhhhccccccccccc
Q psy6455 94 ITLIGALLVDGLCGIASSV----A---------------------------QYYGVFLALR-FINGFAVTGTLGICFPYL 141 (249)
Q Consensus 94 ~~~~~~~~~~~i~~~~~~~----~---------------------------~~~~~l~~~~-~l~G~~~g~~~~~~~~~~ 141 (249)
+.+..+.++......+... . .+.+.++..+ ++.|.+.=.......+.-
T Consensus 334 ~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tly 413 (488)
T KOG2325|consen 334 RIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLY 413 (488)
T ss_pred eeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHH
Confidence 6656554444433332211 0 0112233332 445555555556677788
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455 142 GEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209 (249)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 209 (249)
+|...+++.+.+.++++....++..++|++..... ...|.|++..+.....++...+
T Consensus 414 SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~-----------~~~g~~~v~~~~~~~~l~~~~l 470 (488)
T KOG2325|consen 414 SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIF-----------TLSGPRPVWIILLCLLLVVAAL 470 (488)
T ss_pred HHHhCCccccceeEEEEeccchhhhhhHHHHhhhH-----------HhcCccHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988876 3346677666665555555444
No 264
>KOG3626|consensus
Probab=96.62 E-value=0.067 Score=48.20 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcc--hhHHHHHHHHHH
Q psy6455 28 ILVIFGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQG--RKITLIGALLVD 103 (249)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~ 103 (249)
++++...+...+.......+..++|.+ +++|+.+.+.+..+.....+ +.++|..++|++..|+- .|....+..+..
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~ 471 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS 471 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence 355666677777777777777888875 45699999999988865554 45788899999999875 344444444444
Q ss_pred HHHHHH---HHh--------------------------------------------------------------------
Q psy6455 104 GLCGIA---SSV-------------------------------------------------------------------- 112 (249)
Q Consensus 104 ~i~~~~---~~~-------------------------------------------------------------------- 112 (249)
.+..+. ..+
T Consensus 472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~ 551 (735)
T KOG3626|consen 472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS 551 (735)
T ss_pred HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence 433333 111
Q ss_pred -----------hh--------------------HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHH-HH
Q psy6455 113 -----------AQ--------------------YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLE-MF 160 (249)
Q Consensus 113 -----------~~--------------------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~ 160 (249)
.+ .+..+++..++.-+..+...++....+-...++|+|..++|+.. ..
T Consensus 552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~i 631 (735)
T KOG3626|consen 552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLI 631 (735)
T ss_pred CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHH
Confidence 00 01233444444445555556777778889999999999999955 55
Q ss_pred HHHHHHHHHHHHHHHhccc
Q psy6455 161 WTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 161 ~~~g~~~~~~l~~~l~~~~ 179 (249)
..+|.+-+|++-|++++..
T Consensus 632 rllg~IPsPIifG~~ID~t 650 (735)
T KOG3626|consen 632 RLLGFIPSPIIFGAVIDTT 650 (735)
T ss_pred HHHhcCCchHhhhhhHhhH
Confidence 6788899999999998765
No 265
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.46 E-value=0.00072 Score=59.24 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcc--hhHHHHHHHHHH
Q psy6455 28 ILVIFGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQG--RKITLIGALLVD 103 (249)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~ 103 (249)
+.++...++.....+....+..++|.+ +.+|+.++++++++.....+ +.++|.+++|++..|+. .|+.+.+..+..
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~ 384 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS 384 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence 455566666666666677777777775 55699999999998877666 66889999999999875 344544444444
Q ss_pred HHHHHHHH---h--h-------------------------------------------------hHHHHHHHHHHHHHhh
Q psy6455 104 GLCGIASS---V--A-------------------------------------------------QYYGVFLALRFINGFA 129 (249)
Q Consensus 104 ~i~~~~~~---~--~-------------------------------------------------~~~~~l~~~~~l~G~~ 129 (249)
.++.+... + + +.+..+++..++.-+.
T Consensus 385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~ 464 (539)
T PF03137_consen 385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF 464 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence 44333211 0 0 0112333444444444
Q ss_pred hcccccccccccccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Q psy6455 130 VTGTLGICFPYLGEFQPTAYREKVLCWLE-MFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~ 178 (249)
.+.........+-...|+++|..++|+.. ....+|.+-+|++-|.+.+.
T Consensus 465 ~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 465 TFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------
T ss_pred HHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 45555666666778889999999999965 45578888899998888743
No 266
>KOG3762|consensus
Probab=96.33 E-value=0.00087 Score=57.43 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=57.5
Q ss_pred HHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHH-HHHHHHHHHHHHhh
Q psy6455 41 AISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGA-LLVDGLCGIASSVA 113 (249)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~-~~~~~i~~~~~~~~ 113 (249)
+.....+.+.++.+.+++|+++.+.|.+...--+..+++.|++|.++||+-+||.++++ ++......+++.+.
T Consensus 24 ~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 24 GARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred eecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 34455566778888899999999999999999999999999999999999887766555 55555555555543
No 267
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.21 E-value=0.31 Score=41.68 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhhccccccccCC-CCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH--
Q psy6455 35 LLYAYAAISITVLSFVLPSAQCDFGM-TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS-- 111 (249)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-- 111 (249)
...+......-.+.+..+.+..+..- +---.+.....-.+...++++..|.+.||..|.+++..+.+..-++.....
T Consensus 9 ~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~ 88 (432)
T PF06963_consen 9 LSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCAL 88 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555432 333344455555667788999999999999999887777655433322211
Q ss_pred ----hh--h-----H--HHHHHHHHHHHHh----h-hccccccccccccccc--ccchhHHHHHHHHHHHHHHHHHHHHH
Q psy6455 112 ----VA--Q-----Y--YGVFLALRFINGF----A-VTGTLGICFPYLGEFQ--PTAYREKVLCWLEMFWTGGIIVLPAV 171 (249)
Q Consensus 112 ----~~--~-----~--~~~l~~~~~l~G~----~-~g~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~~~~~l 171 (249)
+. + + ...+++.-.+.|. + .+.....---++..+. +++.+.+..+...-.--+..+++|++
T Consensus 89 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~ 168 (432)
T PF06963_consen 89 FLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLF 168 (432)
T ss_pred HHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1 1 1111222222221 1 1111122222333333 44556666666666677899999999
Q ss_pred HHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455 172 AWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209 (249)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 209 (249)
.|.+.. ..+.+....+.++..++..+.
T Consensus 169 vG~l~t-----------~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 169 VGLLMT-----------FASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHhh-----------ccCHHHHHHHHHHHHHHHHHH
Confidence 999973 346777777777777666655
No 268
>KOG1479|consensus
Probab=96.05 E-value=0.23 Score=41.75 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH---HHHHhcccccccCcccccchh
Q psy6455 116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAV---AWLLIPLNLRIETPYFLYSSW 192 (249)
Q Consensus 116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l---~~~l~~~~~~~~~~~~~~~~w 192 (249)
+...++.-.+.+++.|..+.......+++ |+|.-...++- .++++++...+ .....+. +..+-
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqavm~G----~a~aG~l~Sl~~i~tka~~~~---------~~~sA 182 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAVMSG----QALAGTLTSLLRILTKAAFSD---------SRTSA 182 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHHHhc----chhHhHHHHHHHHHHHHhcCC---------CCcee
Confidence 45556666778888888888777666654 55554333332 22333332222 1111111 12333
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455 193 NLFVTLVSVPSILLALWLTRFPESP 217 (249)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
...|.+..++.+++.+++..+|+.|
T Consensus 183 ~~yF~~s~~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 183 LIYFITSTVILLLCFVLYLVLPKLP 207 (406)
T ss_pred ehhHHHHHHHHHHHHHHHHHhhcch
Confidence 4456666666666666666566555
No 269
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=95.95 E-value=0.056 Score=46.38 Aligned_cols=144 Identities=13% Similarity=0.020 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccc--cCCCCcchhhHH---HHhHHHHHHHHHHHHhhhhhcchhHHHHHHH-HHHHH
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSAQCD--FGMTSSDKGWLN---AAPMLGMVFGSYFWGCLADTQGRKITLIGAL-LVDGL 105 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~---~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~-~~~~i 105 (249)
++.+.++.++.........+|.+.++ -++|-++.+... -.+++=..=..++=...+.|+||||..++=. .+.++
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~ 83 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGI 83 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHH
Confidence 45566777777766655667887776 566666654432 2233222222222233455999999877532 33333
Q ss_pred HHHHHHhhh------------------------HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHH
Q psy6455 106 CGIASSVAQ------------------------YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFW 161 (249)
Q Consensus 106 ~~~~~~~~~------------------------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 161 (249)
.++..+... +...+....++.=+..+.---.+=.+.-.+.++++++.+..-.+.+.
T Consensus 84 ~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~ 163 (544)
T PF13000_consen 84 LMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQ 163 (544)
T ss_pred HHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHh
Confidence 333322111 11123333333333333333334456667778888887777766667
Q ss_pred HHHHHHHHHHHHHH
Q psy6455 162 TGGIIVLPAVAWLL 175 (249)
Q Consensus 162 ~~g~~~~~~l~~~l 175 (249)
+.|..++..+.-.+
T Consensus 164 ~~Gyfls~tvFlal 177 (544)
T PF13000_consen 164 TAGYFLSFTVFLAL 177 (544)
T ss_pred hhhHHHHHHHHHhh
Confidence 77766665544333
No 270
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=95.62 E-value=0.5 Score=40.55 Aligned_cols=109 Identities=11% Similarity=-0.054 Sum_probs=70.1
Q ss_pred hhHHHHhHHHHHHHHHHHHhhhhhcchh--HHHHHHH--HHHHHHHHHHHh---------hhHHHHHHHHHHHHHhhhcc
Q psy6455 66 GWLNAAPMLGMVFGSYFWGCLADTQGRK--ITLIGAL--LVDGLCGIASSV---------AQYYGVFLALRFINGFAVTG 132 (249)
Q Consensus 66 ~~~~~~~~i~~~i~~~~~g~l~dr~Grr--~~~~~~~--~~~~i~~~~~~~---------~~~~~~l~~~~~l~G~~~g~ 132 (249)
-.+...++++=.+|..+..+.. .-++| ++++.+. +++....++|.. .++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 3455666666667666554321 11222 3333222 223333333322 23445566778999999998
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 133 TLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 133 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 175 (249)
..+....+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999998888888888888887775443
No 271
>KOG3097|consensus
Probab=95.49 E-value=0.46 Score=38.81 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccccccc--chh
Q psy6455 73 MLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPT--AYR 150 (249)
Q Consensus 73 ~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~r 150 (249)
.+..+...++.+.+..++|-|+.+.++....... +..-+-+.+..++..-...|++.+......-+|++++-.. ++|
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~ 146 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR 146 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence 3445566667778999999999999888777653 3334556788899999999999999999888898887644 234
Q ss_pred ---------HH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 151 ---------EK----VLCWLEMFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 151 ---------~~----~~~~~~~~~~~g~~~~~~l~~~l 175 (249)
.+ ...+++....+|..++.++-...
T Consensus 147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~~ 184 (390)
T KOG3097|consen 147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTLF 184 (390)
T ss_pred hhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 33445555555655555554443
No 272
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=95.20 E-value=0.7 Score=39.67 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHH
Q psy6455 115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNL 194 (249)
Q Consensus 115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~ 194 (249)
.++..++.-++.|++.+..+.....+.+ .+|++. +..+..+.+++++++..+.-...... .++.+...+-..
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~---~~~~~~~~~a~~ 176 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASG---NDSHGLKKSALG 176 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhc---CCccchhhhhhh
Confidence 4566677778889998888888887776 455544 33344444445544443322211111 000001122233
Q ss_pred HHHHHHHHHHHHHHHhhcccCChh
Q psy6455 195 FVTLVSVPSILLALWLTRFPESPK 218 (249)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~ 218 (249)
.|.+..++.+++++++..+++.|.
T Consensus 177 YF~~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 177 YFGTPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH
Confidence 455555556666666555665543
No 273
>KOG3810|consensus
Probab=93.33 E-value=0.24 Score=40.80 Aligned_cols=133 Identities=16% Similarity=0.077 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHH
Q psy6455 75 GMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVL 154 (249)
Q Consensus 75 ~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 154 (249)
.+.+.-.+.=.+.|-.-.|++++.-.+.....-.+..+.++.+.+-+.-+..|...+ .....++++-+..+++++-++.
T Consensus 54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt 132 (433)
T KOG3810|consen 54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVT 132 (433)
T ss_pred HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHH
Confidence 345556666678998888998888877777777778888899888888889898654 4666888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455 155 CWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESP 217 (249)
Q Consensus 155 ~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (249)
+..-...-.|..+|..++..+.... ..++...-.+...-..+..++..++|..+
T Consensus 133 ~y~RaA~L~g~~~g~vlaQlLvs~~---------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~ 186 (433)
T KOG3810|consen 133 GYCRAAFLVGKFVGSVLAQLLVSLE---------TLSYTTLNYISLAEVTIAVLLALFLPRVK 186 (433)
T ss_pred HHhHHHHHHHhHHHhHHHHHHhhhc---------ccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence 9877777777777777777776432 24555555555555555555566666554
No 274
>KOG0637|consensus
Probab=93.14 E-value=0.21 Score=42.48 Aligned_cols=113 Identities=15% Similarity=-0.038 Sum_probs=66.4
Q ss_pred hhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcc-------------
Q psy6455 66 GWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTG------------- 132 (249)
Q Consensus 66 ~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~------------- 132 (249)
.|=..++.+...+.+....++.+|+|-|+.++.+...+.++.-+....++.+.....+-..|+-.+.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 4556777888899999999999999976666666554555555555555544444444444433222
Q ss_pred --------cccccccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455 133 --------TLGICFPYLGEFQPTA--YREKVLCWLEMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 133 --------~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 178 (249)
.+.+-++..+...... .+|...++.+....+.+++...-.|.+.+.
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~ 470 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQL 470 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhh
Confidence 2222333332222222 235555667777777777766655555543
No 275
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=93.00 E-value=0.95 Score=38.33 Aligned_cols=98 Identities=15% Similarity=-0.091 Sum_probs=73.0
Q ss_pred CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccc
Q psy6455 62 SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLI--GALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFP 139 (249)
Q Consensus 62 ~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~ 139 (249)
..--|.+-....+..+++++..|++..++++..-+. ...++.+...+++...+++|...++.++.+.......+....
T Consensus 284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~ 363 (412)
T PF01770_consen 284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASF 363 (412)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344588888888889999999999988887754444 334555566677788899999999998888777777777777
Q ss_pred ccccccccchhHHHHHHHHH
Q psy6455 140 YLGEFQPTAYREKVLCWLEM 159 (249)
Q Consensus 140 ~~~~~~~~~~r~~~~~~~~~ 159 (249)
-++.....+.-+...|+.++
T Consensus 364 qIA~~l~~e~yaLVFGiNtf 383 (412)
T PF01770_consen 364 QIAKNLSEERYALVFGINTF 383 (412)
T ss_pred HHHHhccccceeeeeeeHHH
Confidence 77777776666666666443
No 276
>KOG1479|consensus
Probab=92.11 E-value=0.64 Score=39.13 Aligned_cols=107 Identities=16% Similarity=0.052 Sum_probs=72.2
Q ss_pred hhhHHHH-hHHHHHHHHHHHHhhhhhcchhHHHHHHHH-HHHHHHHH-H------HhhhHHHHHHHHHHHHHhhhccccc
Q psy6455 65 KGWLNAA-PMLGMVFGSYFWGCLADTQGRKITLIGALL-VDGLCGIA-S------SVAQYYGVFLALRFINGFAVTGTLG 135 (249)
Q Consensus 65 ~~~~~~~-~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~-~~~i~~~~-~------~~~~~~~~l~~~~~l~G~~~g~~~~ 135 (249)
....... +++.-.+|.+.+.++-++= ||...+.... +..+-.+. | .+..+-++.++...+.|+..|-...
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 3444555 7888888877777777654 3433333222 22222222 1 1234566778888999999998888
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 136 ICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA 172 (249)
Q Consensus 136 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 172 (249)
....+..+-.+++++..+..+.......|..+|..++
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8889999999999988887777777777777776654
No 277
>KOG3880|consensus
Probab=91.17 E-value=0.16 Score=41.08 Aligned_cols=135 Identities=10% Similarity=-0.081 Sum_probs=82.7
Q ss_pred hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccc
Q psy6455 65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEF 144 (249)
Q Consensus 65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~ 144 (249)
.|.+..+-.+-..+..+.+..+.||+---.=+.+..++.+.+.++.+++++.++-+++-.+..++.|.....-..+.+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 4555555566667777788888888754444455666788888899999999998888888888877766554444332
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 145 QPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 145 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
+++. ..+.++.+.+..+.+|..--..+.+. ...+-+...++...+.++.++.++++
T Consensus 143 Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~---------~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 143 YPSI----VIAGWSSGTGGAGLIGASSYAFLTSW---------ANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred CCCc----eeccccCCCCcchhhhhhHHHHHhhh---------cCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 3322 23333333344444444333333321 11456677777777666666665553
No 278
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=90.43 E-value=9.4 Score=31.85 Aligned_cols=86 Identities=19% Similarity=0.134 Sum_probs=59.4
Q ss_pred cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH----HH-Hh----hhHHHHHHHHHHHHHh
Q psy6455 58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI----AS-SV----AQYYGVFLALRFINGF 128 (249)
Q Consensus 58 ~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~----~~-~~----~~~~~~l~~~~~l~G~ 128 (249)
.|-+.-+.+.+.+.+..++.+|+...-++.|.--.-+.+.+-+++..++.. +. .| .++-+.+.+..++.|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 455566888999999999999999999988854433333333333333321 11 12 2466778888899999
Q ss_pred hhccccccccccccc
Q psy6455 129 AVTGTLGICFPYLGE 143 (249)
Q Consensus 129 ~~g~~~~~~~~~~~~ 143 (249)
-.|...|....++..
T Consensus 118 LVG~EiPL~mrml~~ 132 (508)
T COG4262 118 LVGAEIPLLMRMLQR 132 (508)
T ss_pred HHhcchHHHHHHHHH
Confidence 999999988887765
No 279
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=89.88 E-value=13 Score=32.48 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=51.1
Q ss_pred HHHHHhhhcccccccccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPTA-YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV 201 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~ 201 (249)
-++.|+.....+......+.|.+|.+ +|+..++-++...++...+..++++.+. ...||.....+.-+
T Consensus 273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~-----------~~~Gw~~~a~i~Pi 341 (472)
T TIGR00769 273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVI-----------RKYGWLTAALITPL 341 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHHHHH
Confidence 34556666666777777788887654 5788888887777777766666667776 45699887777666
Q ss_pred HHHHH
Q psy6455 202 PSILL 206 (249)
Q Consensus 202 ~~~~~ 206 (249)
+.++.
T Consensus 342 i~lit 346 (472)
T TIGR00769 342 VMLLT 346 (472)
T ss_pred HHHHH
Confidence 65553
No 280
>KOG4332|consensus
Probab=89.70 E-value=9.4 Score=30.76 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=81.8
Q ss_pred hhhHHHHhHHHHHHHHHHHHhhhhhcchhH--HHHHHHHHHHHHHHHHH----hhh---HHHHHHHHHHHHHhhhccccc
Q psy6455 65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKI--TLIGALLVDGLCGIASS----VAQ---YYGVFLALRFINGFAVTGTLG 135 (249)
Q Consensus 65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~--~~~~~~~~~~i~~~~~~----~~~---~~~~l~~~~~l~G~~~g~~~~ 135 (249)
-|.+.+.+.++.++|+-+..++..|-..|. .+.+..+.......+.. .++ +...-+++..+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 488899999999999999998888766552 33333333333222211 122 233335666677778889999
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455 136 ICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209 (249)
Q Consensus 136 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 209 (249)
...-+=++..|.+.|...+.++-.-..+-.-++- +-.+.+. -..+-|..|-+..+...++.+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvL----ynlh~~~-------~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVL----YNLHVDA-------FPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhh----eeccccc-------CccccchhhhhhHHHHHHHHHH
Confidence 9999999999999999888876543332222211 1101110 1124566777777666666544
No 281
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=89.52 E-value=5 Score=34.98 Aligned_cols=97 Identities=11% Similarity=-0.078 Sum_probs=73.1
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchh--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccc
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRK--ITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYL 141 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~ 141 (249)
.=|.+-.+..+..++.++..|++-.++.+- ..+-+..++.+...+++..++|+|..+++.++.+.......++...-+
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i 378 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI 378 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777889999999998777553 333344455555567778889999999999999998888888888888
Q ss_pred ccccccchhHHHHHHHHHH
Q psy6455 142 GEFQPTAYREKVLCWLEMF 160 (249)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~ 160 (249)
++....+.-|...|+.++.
T Consensus 379 A~~L~~~~~aLvFGiNtfv 397 (511)
T TIGR00806 379 ASSLSKELCALVFGINTFV 397 (511)
T ss_pred HHHhcccceEEEEecHHHH
Confidence 8888777667777765543
No 282
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=88.11 E-value=6.1 Score=26.85 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=30.2
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 106 (249)
..+.......++..++..+.+.+.|..|.+..+.+...+..+.
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 3456667777888888888888888888777666555444443
No 283
>KOG3880|consensus
Probab=86.98 E-value=2.2 Score=34.83 Aligned_cols=106 Identities=14% Similarity=0.030 Sum_probs=71.5
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccc
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV-------DGLCGIASSVAQYYGVFLALRFINGFAVTGTLGI 136 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~-------~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~ 136 (249)
+.-|....+.+|..+. +-+-|+=+-+ ++..+.+ +.+.-.+..+.++++...+.-+.-|+-.|..+.-
T Consensus 289 qYRwyqvlYQlGVFiS-----RSS~~~~~~p-~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVN 362 (409)
T KOG3880|consen 289 QYRWYQVLYQLGVFIS-----RSSINLFTMP-YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVN 362 (409)
T ss_pred cchhhheeeeeeEEEE-----eccceEEech-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHH
Confidence 4678888888765432 2222222222 2222221 1222223446778888888888889987888888
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 137 CFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 137 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 175 (249)
..--+.+-.++++|..+++.....-.+|..++.+++-.+
T Consensus 363 Tf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 363 TFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 888888888899999999999988888888887776544
No 284
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=84.82 E-value=0.24 Score=40.33 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=3.6
Q ss_pred HHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHH--HHHHHHHHHHHh----------hhHHHHHHHHHHHHHhhhcccc
Q psy6455 68 LNAAPMLGMVFGSYFWGCLADT-QGRKITLIGAL--LVDGLCGIASSV----------AQYYGVFLALRFINGFAVTGTL 134 (249)
Q Consensus 68 ~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~--~~~~i~~~~~~~----------~~~~~~l~~~~~l~G~~~g~~~ 134 (249)
....++++-.+|..+.++.-=+ ..+|++++.+. +++....+++.. .++-+..++..++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4567888888888877764211 13444444321 222222222311 2244566777889999999988
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 135 GICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAW 173 (249)
Q Consensus 135 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 173 (249)
+....+..+..++++|..+..+......+|..+|..++-
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp HHHH-----------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888888777888777776653
No 285
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=84.03 E-value=20 Score=28.55 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=52.2
Q ss_pred HHHhHHHHHHHHHHHHhhhhh-cchhHHHH----HHHHHHHHHHHHHHh-h----hHHHHHHHHHHHHHhhhcccccccc
Q psy6455 69 NAAPMLGMVFGSYFWGCLADT-QGRKITLI----GALLVDGLCGIASSV-A----QYYGVFLALRFINGFAVTGTLGICF 138 (249)
Q Consensus 69 ~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~----~~~~~~~i~~~~~~~-~----~~~~~l~~~~~l~G~~~g~~~~~~~ 138 (249)
.-.+..|..+|....|.++.. +.||+.+. .+.++.++..+.... . .+...+.+.-++.|++.=+.+++..
T Consensus 147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL 226 (267)
T PF07672_consen 147 QILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVIL 226 (267)
T ss_pred HHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 334445555666666666653 34554333 222333332222111 1 1356677888899988777787776
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy6455 139 PYLGEFQPTAYREKVLCWLEMFWTGGIIVLPA 170 (249)
Q Consensus 139 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 170 (249)
..-.|.= ...+-+..-.++..+++|.+.-.+
T Consensus 227 ~lPhEyK-~~~pk~ig~~Fg~iWGfGY~~yTi 257 (267)
T PF07672_consen 227 NLPHEYK-GYNPKKIGIQFGLIWGFGYIFYTI 257 (267)
T ss_pred cChhhhc-CCCcceehhHHHHHHHHHHHHHHH
Confidence 5655552 222222222356666666655433
No 286
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=81.77 E-value=36 Score=29.93 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=49.0
Q ss_pred HHHHHhhhcccccccccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPTA-YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV 201 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~ 201 (249)
-+..|++........-..+.+.+|.+ .+...+|-++...++-..+-.++++.+. ...||+....+.-+
T Consensus 289 vi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~ii-----------r~~GW~~~AlitPi 357 (491)
T PF03219_consen 289 VIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNII-----------RRFGWRTAALITPI 357 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHHhHH
Confidence 34556666666777777777777664 4566677666665655555557777776 45699988777655
Q ss_pred HHHHHHH
Q psy6455 202 PSILLAL 208 (249)
Q Consensus 202 ~~~~~~~ 208 (249)
+.++..+
T Consensus 358 v~lit~~ 364 (491)
T PF03219_consen 358 VILITGL 364 (491)
T ss_pred HHHHHHH
Confidence 5554443
No 287
>KOG3810|consensus
Probab=80.22 E-value=16 Score=30.59 Aligned_cols=94 Identities=15% Similarity=-0.089 Sum_probs=69.6
Q ss_pred hhHHHHhHHHHHHHHHHHHhhhhhcchhH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccc
Q psy6455 66 GWLNAAPMLGMVFGSYFWGCLADTQGRKI--TLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGE 143 (249)
Q Consensus 66 ~~~~~~~~i~~~i~~~~~g~l~dr~Grr~--~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~ 143 (249)
|.+-....+..+++.+..|++.-++.|.. .+.++.+..+-..+++.-++++|...++.++.+.......++...-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 45555666778899999999988888764 4444555555556677778889999999888887777777777777888
Q ss_pred ccccchhHHHHHHHHH
Q psy6455 144 FQPTAYREKVLCWLEM 159 (249)
Q Consensus 144 ~~~~~~r~~~~~~~~~ 159 (249)
..+.+.-|...|+.+.
T Consensus 354 nL~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTF 369 (433)
T ss_pred hhhhhhheeeeehHHH
Confidence 8777777776666543
No 288
>PRK10263 DNA translocase FtsK; Provisional
Probab=79.68 E-value=68 Score=31.83 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=14.3
Q ss_pred HhHHHHHHHHHHHHhhhhhcch
Q psy6455 71 APMLGMVFGSYFWGCLADTQGR 92 (249)
Q Consensus 71 ~~~i~~~i~~~~~g~l~dr~Gr 92 (249)
+.+.++.+|+.+...+..-||-
T Consensus 60 V~Nl~GiVGA~LAD~L~~LFGl 81 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFFIFGV 81 (1355)
T ss_pred cccccchHHHHHHHHHHHHHhH
Confidence 4455666777777766666774
No 289
>KOG2601|consensus
Probab=78.37 E-value=24 Score=29.92 Aligned_cols=69 Identities=12% Similarity=-0.042 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhccccccccCC-CCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455 36 LYAYAAISITVLSFVLPSAQCDFGM-TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG 104 (249)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (249)
+++......-.+.+....+..+++- |-...+.....-+....+..++.|...|+..|+|++...+.+.=
T Consensus 35 gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqN 104 (503)
T KOG2601|consen 35 GYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQN 104 (503)
T ss_pred HHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhcc
Confidence 3333333344444444444444442 22233333344445567888899999999999998887765543
No 290
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=77.39 E-value=9 Score=27.64 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=44.7
Q ss_pred hhhhhcchhHHHHHHHHHH-HHHHHHHHh---------hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHH
Q psy6455 85 CLADTQGRKITLIGALLVD-GLCGIASSV---------AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVL 154 (249)
Q Consensus 85 ~l~dr~Grr~~~~~~~~~~-~i~~~~~~~---------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 154 (249)
.++||+-||..+..|.-.. +++.+...+ .+++..++...++.|+|. ..+.+..++--.++++-|..+
T Consensus 56 ~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSll 132 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLL 132 (153)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcc
Confidence 3567777766555543211 122221111 234455555555555542 344555666667778889999
Q ss_pred HHHHHHHHHHHHH
Q psy6455 155 CWLEMFWTGGIIV 167 (249)
Q Consensus 155 ~~~~~~~~~g~~~ 167 (249)
|+-.+-.+++-+.
T Consensus 133 G~~e~~~N~~r~~ 145 (153)
T PF11947_consen 133 GWEEFKRNWGRMW 145 (153)
T ss_pred cHHHHHHhHHHHH
Confidence 9887777766543
No 291
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.29 E-value=18 Score=24.32 Aligned_cols=32 Identities=13% Similarity=0.003 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHH
Q psy6455 69 NAAPMLGMVFGSYFWGCLADTQ-GRKITLIGAL 100 (249)
Q Consensus 69 ~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~ 100 (249)
.+.=.++..+.....||+.||| |-++..++.+
T Consensus 48 lssefIsGilVGa~iG~llD~~agTsPwglIv~ 80 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKFAGTSPWGLIVF 80 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4445566667777789999986 5555444433
No 292
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=66.32 E-value=16 Score=24.46 Aligned_cols=50 Identities=16% Similarity=-0.024 Sum_probs=39.7
Q ss_pred cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh
Q psy6455 63 SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV 112 (249)
Q Consensus 63 ~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 112 (249)
+..|-+..++.-.+.+.++++++..|+.-+.+-=.+|..+..++..++.+
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 45678888999899999999999999988877777777777666655443
No 293
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=64.63 E-value=35 Score=25.53 Aligned_cols=24 Identities=17% Similarity=0.519 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHHHHHHhhhhhcch
Q psy6455 69 NAAPMLGMVFGSYFWGCLADTQGR 92 (249)
Q Consensus 69 ~~~~~i~~~i~~~~~g~l~dr~Gr 92 (249)
+..|.+++.+.+.+.|++.||.-+
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhc
Confidence 456788899999999999999886
No 294
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=61.64 E-value=43 Score=23.75 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=18.6
Q ss_pred cccccccchhHHHHHHHHHHHHHHH
Q psy6455 141 LGEFQPTAYREKVLCWLEMFWTGGI 165 (249)
Q Consensus 141 ~~~~~~~~~r~~~~~~~~~~~~~g~ 165 (249)
+.|++|+..|....+.++.......
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~k 84 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAVK 84 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHH
Confidence 5799999999888887765544433
No 295
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=60.47 E-value=92 Score=25.37 Aligned_cols=75 Identities=21% Similarity=0.050 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh---cchhHHHHHHHHHHHHHH
Q psy6455 31 IFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT---QGRKITLIGALLVDGLCG 107 (249)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr---~Grr~~~~~~~~~~~i~~ 107 (249)
+.+.+.+++.-+..+...-.+..+.+..|.-.+..++..+. +...+..+-.++ ||.||.=+++.+..++..
T Consensus 28 ~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal------~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~L 101 (296)
T COG1230 28 LLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLAL------IAIKLARRPATKRFTFGYKRLEILAAFLNALLL 101 (296)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHH------HHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHH
Confidence 33444444444444445555555666666544444443333 333344455554 788887777766666555
Q ss_pred HHHH
Q psy6455 108 IASS 111 (249)
Q Consensus 108 ~~~~ 111 (249)
+..+
T Consensus 102 i~~s 105 (296)
T COG1230 102 IVVS 105 (296)
T ss_pred HHHH
Confidence 5443
No 296
>PRK02237 hypothetical protein; Provisional
Probab=60.29 E-value=30 Score=23.30 Aligned_cols=49 Identities=16% Similarity=-0.105 Sum_probs=38.6
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV 112 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 112 (249)
..|-+..+|.-.+.+.++++++..|+.-+-+-=.+|..+..++..++.+
T Consensus 57 ~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 57 AFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 4778889999899999999999999887777666777766666655433
No 297
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=60.18 E-value=45 Score=23.99 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHHHHHHhhhhhcchhH
Q psy6455 69 NAAPMLGMVFGSYFWGCLADTQGRKI 94 (249)
Q Consensus 69 ~~~~~i~~~i~~~~~g~l~dr~Grr~ 94 (249)
+..|.++..+.+.+.|++.+|..+++
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHhccccc
Confidence 45677888999999999999988764
No 298
>PRK14229 camphor resistance protein CrcB; Provisional
Probab=58.51 E-value=54 Score=22.11 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=14.7
Q ss_pred HHHhhhccccccccccccccccc
Q psy6455 125 INGFAVTGTLGICFPYLGEFQPT 147 (249)
Q Consensus 125 l~G~~~g~~~~~~~~~~~~~~~~ 147 (249)
+.+.|..+.++...++..|...-
T Consensus 58 ~l~tGf~GgfTTFSTf~~e~~~l 80 (108)
T PRK14229 58 ILATGFCGGLTTFSTLNDELQRL 80 (108)
T ss_pred HHHhhHccccccHHHHHHHHHHH
Confidence 34444455677777888887654
No 299
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=57.95 E-value=73 Score=28.16 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
.+++..++..+.....+....++-+.+.+|..-|+.|.+.++..++|+.--..+.-++.+..
T Consensus 407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 34445566677777778888899999999999999999999999999988887777777654
No 300
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=56.65 E-value=68 Score=29.43 Aligned_cols=59 Identities=7% Similarity=-0.104 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWL 174 (249)
Q Consensus 116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 174 (249)
.++.+.-.++.+.+.........-+-.+-.|++.|....+++....++|..+.-.+...
T Consensus 565 ~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~ 623 (654)
T TIGR00926 565 ILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEF 623 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555665555555455555566677777777777777777777776665543
No 301
>KOG1237|consensus
Probab=56.42 E-value=28 Score=31.22 Aligned_cols=64 Identities=8% Similarity=-0.114 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455 115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL 178 (249)
Q Consensus 115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 178 (249)
|+++++-=.++.|++.........-+.-+-+|++.|..+++++....++|..+...+.......
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~ 520 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFS 520 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788889999999888888888888889999999999999999999999998888776543
No 302
>COG4769 Predicted membrane protein [Function unknown]
Probab=55.22 E-value=23 Score=25.84 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy6455 72 PMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFING 127 (249)
Q Consensus 72 ~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G 127 (249)
++....+.+.+.-++..++|.|.+-++|.- ..-++.+|..++++.+++.+
T Consensus 82 ~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS------~mGaF~hNl~QLivas~Lv~ 131 (181)
T COG4769 82 YSFAGAILSTLFMYFLYQFGPKYLSLLGIS------VMGAFTHNLGQLIVASFLVF 131 (181)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeeehh------hHHHHHHhHHHHHHHHHHHh
Confidence 344455555556666777776665333321 12345677777777777655
No 303
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=51.98 E-value=1.4e+02 Score=25.00 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc
Q psy6455 28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ 90 (249)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~ 90 (249)
+++.+.....++.+..+..+-...|.+..+ + ...-.|++.+.+++..++|+.+..++..+-
T Consensus 245 ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 245 RILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred hhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444444455444444344445655511 1 233479999999999999999998766543
No 304
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=51.86 E-value=8.4 Score=30.56 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 148 AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 148 ~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
++|+....+...+.++|.++.... ++...... ......|++++.+.+++.++-++++.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~----~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSSVV----IALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhh--HHhcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666777887775332 12110000 0022469999999988887777776555
No 305
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=51.79 E-value=63 Score=20.81 Aligned_cols=42 Identities=12% Similarity=-0.030 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhhhcch-------hHHHHHHHHHHHHHHHHHHhhhHH
Q psy6455 75 GMVFGSYFWGCLADTQGR-------KITLIGALLVDGLCGIASSVAQYY 116 (249)
Q Consensus 75 ~~~i~~~~~g~l~dr~Gr-------r~~~~~~~~~~~i~~~~~~~~~~~ 116 (249)
+.....+.++++.+|..+ ++.+.++.++...+.++++..+|.
T Consensus 30 ~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~ 78 (86)
T PF10785_consen 30 GATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSS 78 (86)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666677776655 677888888888888888776654
No 306
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=51.57 E-value=53 Score=23.42 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=17.5
Q ss_pred ccccccccchhHHHHHHHHHHHHH
Q psy6455 140 YLGEFQPTAYREKVLCWLEMFWTG 163 (249)
Q Consensus 140 ~~~~~~~~~~r~~~~~~~~~~~~~ 163 (249)
-+.|++|+..|....+.++.....
T Consensus 57 ALkDm~Pp~~R~~i~~~~s~t~s~ 80 (145)
T TIGR00986 57 ALKDIVPPTTRGWIYHKYSTTTNF 80 (145)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHH
Confidence 356899999998877776655443
No 307
>KOG3574|consensus
Probab=51.19 E-value=1.1e+02 Score=26.27 Aligned_cols=60 Identities=13% Similarity=-0.036 Sum_probs=48.4
Q ss_pred HHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy6455 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180 (249)
Q Consensus 121 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 180 (249)
....+.+......+....+..+++.++..-|+.+.+.++..++|+.--..+..++.+...
T Consensus 374 ~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 374 TSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 344555555566677778899999999999999999999999999888888888876553
No 308
>KOG4830|consensus
Probab=50.04 E-value=12 Score=30.02 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhh---------hhhcchhHHH
Q psy6455 40 AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCL---------ADTQGRKITL 96 (249)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l---------~dr~Grr~~~ 96 (249)
.-.....+..++-.+.++.|.++.....++.+..+.-++..++.|.. .||+|||+..
T Consensus 29 NDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 29 NDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 33333444444445667788888888888888888888888888744 4699998753
No 309
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=49.97 E-value=2.2e+02 Score=26.52 Aligned_cols=52 Identities=19% Similarity=0.071 Sum_probs=33.0
Q ss_pred HHHHhhhhh----cchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhcc
Q psy6455 81 YFWGCLADT----QGRKITLIGALLVDGLCGIASSVA-QYYGVFLALRFINGFAVTG 132 (249)
Q Consensus 81 ~~~g~l~dr----~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~~~l~G~~~g~ 132 (249)
.+++-++|. .||.+-++++.++++++.+...+. +..+.+....++.+++.+.
T Consensus 41 ~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~m 97 (701)
T TIGR01667 41 IIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFIL 97 (701)
T ss_pred hHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 344455553 356778888888888887776654 4455566666666665544
No 310
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=49.03 E-value=1.9e+02 Score=25.56 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=52.5
Q ss_pred HHHHHHHhhhcccccccccccccccccc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccccCcccccchhHHHHHH
Q psy6455 121 ALRFINGFAVTGTLGICFPYLGEFQPTA-YREKVLCWLEMFWTGG-IIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTL 198 (249)
Q Consensus 121 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g-~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~ 198 (249)
..-+..|++........-.-+.+.+|.. .+...++-++...++- .++.-.+++-+. ...||-..-.+
T Consensus 289 l~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~i-----------r~~GW~~~Ali 357 (509)
T COG3202 289 LLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLI-----------RRVGWFTGALI 357 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----------HHhhHHHHHHH
Confidence 3344556666666777777778887764 3666677676665555 444555666666 45699888877
Q ss_pred HHHHHHHHHHHhh
Q psy6455 199 VSVPSILLALWLT 211 (249)
Q Consensus 199 ~~~~~~~~~~~~~ 211 (249)
.-++.++..++.+
T Consensus 358 tPiv~litg~lFF 370 (509)
T COG3202 358 TPLVMLITGVLFF 370 (509)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777755543
No 311
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=48.52 E-value=5.8 Score=32.29 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy6455 124 FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLP 169 (249)
Q Consensus 124 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 169 (249)
++.|++.+..+.....+.+. +|++. +.....+.++++++..
T Consensus 5 ~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s 45 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVS 45 (309)
T ss_dssp ----------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHH
Confidence 45677777888888777775 55544 2333344444444443
No 312
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=48.01 E-value=1.6e+02 Score=26.57 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=44.0
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhcccccccccccc
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ-YYGVFLALRFINGFAVTGTLGICFPYLG 142 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~ 142 (249)
+.|+...++.+|...|.-+..-+.. .|-+.. +++.++..+..+...+.. .+.-+-....+-.++.+...+....+..
T Consensus 451 ~~GL~lFla~vG~~aG~~f~~~l~~-~G~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~t~~l~~a~ 528 (562)
T TIGR03802 451 DLGLALFIAVVGLSAGPQAVTAIKE-MGLTLF-LLGIVVTILPLIITMLIGKYVLKYDPALLLGALAGARTATPALGAVL 528 (562)
T ss_pred HHhHHHHHHHHHHhhhHHHHHHHHH-hhHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCCCcHHHHHHH
Confidence 3677777788888887777776643 554444 445555544433332222 1111112222223444455666667777
Q ss_pred cccccc
Q psy6455 143 EFQPTA 148 (249)
Q Consensus 143 ~~~~~~ 148 (249)
|..+.+
T Consensus 529 ~~~~~~ 534 (562)
T TIGR03802 529 ERAGSS 534 (562)
T ss_pred HhcCCC
Confidence 776543
No 313
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=47.08 E-value=2.4e+02 Score=26.24 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=31.7
Q ss_pred HHhhhhh----cchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhcc
Q psy6455 83 WGCLADT----QGRKITLIGALLVDGLCGIASSVA-QYYGVFLALRFINGFAVTG 132 (249)
Q Consensus 83 ~g~l~dr----~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~~~l~G~~~g~ 132 (249)
.+-++|. -||.+-++++.+++.++.+...+. +..+.+....++.+++.+.
T Consensus 43 a~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~m 97 (704)
T TIGR01666 43 AAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIM 97 (704)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3556663 356677778888888777766554 4556666666666665544
No 314
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=45.71 E-value=31 Score=26.80 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=55.9
Q ss_pred cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccc
Q psy6455 54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGT 133 (249)
Q Consensus 54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~ 133 (249)
+.+.||.+..+--=+.+.|.+|..+|.++.+.++.-+. . ...+.+ .+.-.-.|.|.|..
T Consensus 130 I~ekYGldSpEgrGVl~~Yi~GTvfGtiffsllas~~a---------------~-~~~fhP-----~ALAMasGvGSgSM 188 (241)
T PF11299_consen 130 ISEKYGLDSPEGRGVLGVYIIGTVFGTIFFSLLASLLA---------------S-LGIFHP-----YALAMASGVGSGSM 188 (241)
T ss_pred eehhcCCCCccccceEEEeeehhhHHHHHHHHHHHHHH---------------h-ccCCCH-----HHHHHHcCCcHHHH
Confidence 34456666666555666666666666666554433100 0 000111 11222346777777
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 134 LGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 134 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 175 (249)
.+....-+.+.+| +......++....+.+....|-.+.-++
T Consensus 189 MaAa~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~~ifi 229 (241)
T PF11299_consen 189 MAAASGALAAAYP-EMADQILAFAAASNLLTSVTGLYMSIFI 229 (241)
T ss_pred HHHHHHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888886 5556666666666666666665555444
No 315
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=45.52 E-value=58 Score=28.21 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 106 (249)
...+...+..+...+..+.+ +.++.|++.++...+.+.-.+...++.++--.-..+.|-|-....+.-...++
T Consensus 20 ~lglQH~lamfg~~V~VPli--vg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~ 92 (451)
T COG2233 20 LLGLQHLLAMFGATVLVPLL--VGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVA 92 (451)
T ss_pred HHHHHHHHHHHhcchHhhHH--hccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHH
Confidence 34444444444433333332 45679999999999999988888888887776444555555444443333333
No 316
>COG2119 Predicted membrane protein [Function unknown]
Probab=45.43 E-value=93 Score=23.34 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=29.7
Q ss_pred HHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455 70 AAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI 108 (249)
Q Consensus 70 ~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 108 (249)
....+...++.+.+.++++|+..|++-.++.+++.+..+
T Consensus 141 lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal 179 (190)
T COG2119 141 LGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFAL 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 344566777788888999999999988888777665543
No 317
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=43.54 E-value=2.1e+02 Score=24.52 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=28.1
Q ss_pred ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc
Q psy6455 55 QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ 90 (249)
Q Consensus 55 ~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~ 90 (249)
.... .++++...+.+...+...++.++-+....+.
T Consensus 30 ~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~ 64 (415)
T TIGR00801 30 GLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQ 64 (415)
T ss_pred hccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 3445 7888888888888899999999988877654
No 318
>PHA03242 envelope glycoprotein M; Provisional
Probab=42.75 E-value=2.2e+02 Score=24.63 Aligned_cols=37 Identities=16% Similarity=-0.012 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHhhhcccccccccccccccccc
Q psy6455 112 VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA 148 (249)
Q Consensus 112 ~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 148 (249)
+.+|+.....--.+..+..=...+..+-.+.|.+=.+
T Consensus 244 ~gNsF~v~~~~~v~~ai~~F~vL~ii~liv~E~vL~~ 280 (428)
T PHA03242 244 AANNFHLSLPGTLVCLTAVFALLVVLLLVVVEGVLSH 280 (428)
T ss_pred HhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445433333333333333334455556666665433
No 319
>PRK11588 hypothetical protein; Provisional
Probab=41.63 E-value=2.4e+02 Score=25.02 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=16.9
Q ss_pred HhhhhhcchhHHH--HHHHHHHHHHHHHHHhhhH
Q psy6455 84 GCLADTQGRKITL--IGALLVDGLCGIASSVAQY 115 (249)
Q Consensus 84 g~l~dr~Grr~~~--~~~~~~~~i~~~~~~~~~~ 115 (249)
+++..|++.|..+ .+..+++.++....++...
T Consensus 137 ~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee 170 (506)
T PRK11588 137 LALIRKTRGNEILFIPVLFILFSLGGAVFGMGEE 170 (506)
T ss_pred HHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHH
Confidence 5777787766433 3334444444444455443
No 320
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=41.20 E-value=1.6e+02 Score=22.33 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=17.7
Q ss_pred HHhHHHHHHHHHHHHhhh---hhcchhHHHHHHHHHHHHH
Q psy6455 70 AAPMLGMVFGSYFWGCLA---DTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 70 ~~~~i~~~i~~~~~g~l~---dr~Grr~~~~~~~~~~~i~ 106 (249)
....++..+|..+.+.+. ++..+|+.....+++..+.
T Consensus 53 ~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~l 92 (209)
T PF06912_consen 53 LLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAIL 92 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 334445566666666662 2333444444444333333
No 321
>PRK03818 putative transporter; Validated
Probab=40.99 E-value=2.7e+02 Score=25.04 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=42.4
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhcccccccccccc
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QYYGVFLALRFINGFAVTGTLGICFPYLG 142 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~ 142 (249)
+.|+....+.+|..-|.-+..-+.+..|.+..+ ++.+...+..+...+. ....-+-..+.+-.++.+...+....++.
T Consensus 436 ~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 436 ELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIG-YGFLITAVPLLIVGILARMLAKMNYLTLCGMLAGSMTDPPALAFAN 514 (552)
T ss_pred HHhHHHHHHHHHhhhhHHHHHHHhccchHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccCCCcHHHHHHh
Confidence 356666666666666666666655555655443 4444444433333222 22222222333333444555666667777
Q ss_pred cc-ccc
Q psy6455 143 EF-QPT 147 (249)
Q Consensus 143 ~~-~~~ 147 (249)
|. ...
T Consensus 515 ~~~~~~ 520 (552)
T PRK03818 515 NLHPTS 520 (552)
T ss_pred cccCCC
Confidence 74 443
No 322
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=40.80 E-value=1.4e+02 Score=25.26 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=37.1
Q ss_pred ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHhhh
Q psy6455 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV------AQYYGVFLALRFINGFAV 130 (249)
Q Consensus 57 ~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~l~~~~~l~G~~~ 130 (249)
..|. ..+...+.+...+...++.++-+. +.|.|..+.-+.....+....... ..++.....+-++.|+..
T Consensus 28 ~~g~-~~~~~~li~at~l~sgi~Tllq~~---~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g~~~i~gi~~ 103 (389)
T PF00860_consen 28 AFGL-DADTAALISATFLVSGIATLLQGL---PAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALGAVLISGILF 103 (389)
T ss_dssp ------------HHHHHHHHHHHHHHHHH---HTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cchhhHHHHHHHHHHHHHHHHHHh---cCCCceecccccchhhhhhhhcccccccchhhchhhhhhHHHHHHHHH
Confidence 3566 445556677777788888888888 677776666554433333222111 223444444445555433
Q ss_pred ccccc-ccccccccccccchhHH
Q psy6455 131 TGTLG-ICFPYLGEFQPTAYREK 152 (249)
Q Consensus 131 g~~~~-~~~~~~~~~~~~~~r~~ 152 (249)
-.... .....+.+.+|+..++.
T Consensus 104 ~~l~~~g~~~~l~~~~pp~v~g~ 126 (389)
T PF00860_consen 104 ILLGLTGLRKRLRRLFPPVVKGA 126 (389)
T ss_dssp HHHHTT-SH-HHHHH--HHHHHH
T ss_pred HHHHHhchHHHHHHHhChhheEe
Confidence 22211 11226667777666543
No 323
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=37.78 E-value=1.3e+02 Score=23.48 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455 72 PMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI 125 (249)
Q Consensus 72 ~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l 125 (249)
..+|..+|..+..++.||+.....-.++++...++.-...-.++....+++..+
T Consensus 11 Il~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~~~vi~slvl 64 (226)
T PF04474_consen 11 ILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNPLLVILSLVL 64 (226)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 345666777777778888777777777777777765544444455444444433
No 324
>KOG3097|consensus
Probab=37.30 E-value=20 Score=29.76 Aligned_cols=44 Identities=27% Similarity=0.240 Sum_probs=37.2
Q ss_pred cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455 63 SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 63 ~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 106 (249)
..++.+...+.++.++.+.+.|.|..++||-..+..+.+....-
T Consensus 310 ~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~l 353 (390)
T KOG3097|consen 310 SRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLL 353 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 46788889999999999999999999999999888877655443
No 325
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=35.70 E-value=3.2e+02 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=14.8
Q ss_pred CCcchhhHHHHhHHHHHHHHHHHH----hhhhhcch
Q psy6455 61 TSSDKGWLNAAPMLGMVFGSYFWG----CLADTQGR 92 (249)
Q Consensus 61 s~~~~~~~~~~~~i~~~i~~~~~g----~l~dr~Gr 92 (249)
++..-|.+.+...+.+++++.++| ++...+|.
T Consensus 291 ~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g 326 (521)
T PF02990_consen 291 SPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGG 326 (521)
T ss_pred cccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 333344444444444444445554 44445553
No 326
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=35.48 E-value=1.9e+02 Score=22.41 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy6455 73 MLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRF 124 (249)
Q Consensus 73 ~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 124 (249)
.+|..+|..+..++.||+-+-.+-..|+....++.-...-+.+....+++.+
T Consensus 13 l~G~iiG~l~~~klper~k~~l~~~~Gl~~l~iGI~m~~~~~n~~~~ilslv 64 (228)
T COG1811 13 LIGGIIGLLIGKKLPERIKDILMQCLGLAILGIGIKMALQAKNDIMILLALV 64 (228)
T ss_pred HHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 3455666666667777776666666666666666555555556555444443
No 327
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=34.66 E-value=2.1e+02 Score=22.27 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccc--CChhHHHhhCChHHHHHHHHHH
Q psy6455 191 SWNLFVTLVSVPSILLALWLTRFP--ESPKFLFECGEYDQALDILRQM 236 (249)
Q Consensus 191 ~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 236 (249)
+..|.+.+.+++..+.+.++.+-+ |...+...+++.-.+...++.+
T Consensus 50 ~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~l 97 (224)
T PF13829_consen 50 GSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNL 97 (224)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhh
Confidence 334555555555444444333322 2222333334433444455544
No 328
>PRK03612 spermidine synthase; Provisional
Probab=33.20 E-value=2.9e+02 Score=24.55 Aligned_cols=44 Identities=20% Similarity=0.093 Sum_probs=27.3
Q ss_pred cchhhHHHHhHHHHHHHHHHHHhh-hhhcchhHHH-HHHHHHHHHH
Q psy6455 63 SDKGWLNAAPMLGMVFGSYFWGCL-ADTQGRKITL-IGALLVDGLC 106 (249)
Q Consensus 63 ~~~~~~~~~~~i~~~i~~~~~g~l-~dr~Grr~~~-~~~~~~~~i~ 106 (249)
..+|.+..+..+|..+|+++.|.+ ...+|-.... +++.+..+++
T Consensus 145 ~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 145 HNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 456777777788888888777754 4577765443 3344333333
No 329
>PRK14214 camphor resistance protein CrcB; Provisional
Probab=33.02 E-value=1.6e+02 Score=20.16 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=14.8
Q ss_pred HHHHHhhhccccccccccccccccc
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPT 147 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~ 147 (249)
|.+.+.|..+.++.-.++..|...-
T Consensus 62 ~~~l~tGf~GgfTTFSTf~~e~~~l 86 (118)
T PRK14214 62 QLFLGTGFMGGYTTFSTFKVESMEL 86 (118)
T ss_pred HHHHHHHHcccchhHHHHHHHHHHH
Confidence 4444444445567777777777643
No 330
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=32.21 E-value=1.9e+02 Score=20.74 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=29.4
Q ss_pred ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHH
Q psy6455 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG 98 (249)
Q Consensus 57 ~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~ 98 (249)
+.|++....-....+.++.-.++.++...++|+.++-..+.+
T Consensus 66 eiGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~ 107 (150)
T COG3086 66 ELGIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVI 107 (150)
T ss_pred EEccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 356665555555566777778888888889999887765443
No 331
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=31.64 E-value=2.2e+02 Score=21.16 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=4.4
Q ss_pred cCCCCcc
Q psy6455 58 FGMTSSD 64 (249)
Q Consensus 58 ~~~s~~~ 64 (249)
+|+++..
T Consensus 72 ~GlDP~~ 78 (173)
T PF08566_consen 72 MGLDPFM 78 (173)
T ss_pred cCcCHHH
Confidence 5777654
No 332
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=31.38 E-value=79 Score=25.11 Aligned_cols=23 Identities=0% Similarity=-0.099 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc
Q psy6455 192 WNLFVTLVSVPSILLALWLTRFP 214 (249)
Q Consensus 192 w~~~~~~~~~~~~~~~~~~~~~~ 214 (249)
..+.-++..++.++...++.+++
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeec
Confidence 34444555555555555555553
No 333
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=31.29 E-value=1.6e+02 Score=19.50 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHh
Q psy6455 149 YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWL 210 (249)
Q Consensus 149 ~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 210 (249)
..|...++...+.++|+.....++ .-|-..|.+.+++.+......
T Consensus 26 ~~GfslS~L~~slgv~Q~~~kvia-----------------lQWIFAFvI~avlfv~sl~va 70 (97)
T PF08611_consen 26 AMGFSLSYLTASLGVGQFFIKVIA-----------------LQWIFAFVIAAVLFVLSLVVA 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655544332 467778888888777766653
No 334
>PRK04972 putative transporter; Provisional
Probab=31.13 E-value=4e+02 Score=24.05 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=27.3
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI 108 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 108 (249)
+.++....+.+|.-.|.-+..-+-. .|.|..+ .+.+...++.+
T Consensus 63 ~~gl~lF~~~vG~~~Gp~F~~~l~~-~g~~~~~-~~~~~~~~~~~ 105 (558)
T PRK04972 63 NLGFMLFIFCVGVEAGPNFFSIFFR-DGKNYLM-LALVMVGSALV 105 (558)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHH-hhHHHHH-HHHHHHHHHHH
Confidence 5778888888888888877776665 3555443 44444444433
No 335
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=30.97 E-value=2.2e+02 Score=21.00 Aligned_cols=80 Identities=16% Similarity=0.076 Sum_probs=44.9
Q ss_pred cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHh-hhcccccccccc
Q psy6455 63 SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY-YGVFLALRFINGF-AVTGTLGICFPY 140 (249)
Q Consensus 63 ~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~~l~G~-~~g~~~~~~~~~ 140 (249)
.+.++....+.+|.-.|.-+..-+.+. |-|. ++.+.+...+..+....... +.-+-.. ...|. +.+...+.....
T Consensus 56 ~~~GL~lFl~~VGl~aG~~F~~~l~~~-G~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~-~~~G~~aGa~T~tp~L~~ 132 (169)
T PF06826_consen 56 RQLGLALFLAAVGLSAGPGFFSSLKRG-GLKL-LLLGVIITLVPLLIALVIGRYLFKLNPG-IAAGILAGALTSTPALAA 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHccccCcHHHHH
Confidence 356788888888888888887777665 6444 44555555544443332221 1111112 23343 334456667777
Q ss_pred ccccc
Q psy6455 141 LGEFQ 145 (249)
Q Consensus 141 ~~~~~ 145 (249)
..|..
T Consensus 133 A~~~~ 137 (169)
T PF06826_consen 133 AQEAI 137 (169)
T ss_pred HHHhh
Confidence 77773
No 336
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.59 E-value=17 Score=25.33 Aligned_cols=6 Identities=0% Similarity=0.052 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy6455 194 LFVTLV 199 (249)
Q Consensus 194 ~~~~~~ 199 (249)
|++++.
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 333333
No 337
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=30.52 E-value=2.9e+02 Score=22.30 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455 119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL 175 (249)
Q Consensus 119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 175 (249)
.-..|.+.|+-. ..+.++++.++-++|.+++-...--.....+++.++.|+++-.+
T Consensus 22 ~~~lr~~~g~~~-vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l 77 (287)
T PF07760_consen 22 IPPLRVILGFPF-VLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLL 77 (287)
T ss_pred hhHHHHHHHHHH-HHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456687777754 44566888888888865543333333444555556666665554
No 338
>PLN02878 homogentisate phytyltransferase
Probab=30.50 E-value=2.6e+02 Score=22.66 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=36.7
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHH
Q psy6455 89 TQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTG 163 (249)
Q Consensus 89 r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 163 (249)
|+|+|+...++..+..++.....+..-.........+...+........ -+=+.-.+.+.+....+.++..|-+
T Consensus 195 ~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L-~~rs~~vD~~sk~~i~~fY~fiwkl 268 (280)
T PLN02878 195 RLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASIL-WQRAQSVDLSSKAAITSFYMFIWKL 268 (280)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHhHhcCcccHHHHHHHHHHHHHH
Confidence 7888888888877766665533322211111223333333333221111 1222333445666677777776654
No 339
>PHA03237 envelope glycoprotein M; Provisional
Probab=30.11 E-value=3.6e+02 Score=23.30 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHhhhcccccccccccccccccc
Q psy6455 112 VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA 148 (249)
Q Consensus 112 ~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 148 (249)
+.+|+.....--.+.++..=...+..+-.+.|.+=.+
T Consensus 247 ~gNsF~v~~~~~v~~ai~~F~vl~iiyliv~E~vL~r 283 (424)
T PHA03237 247 LANSFHLTLWQTITVAIGVFVALTLMYLLIVEFVVSR 283 (424)
T ss_pred HhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455443333333334433344555666666665443
No 340
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=29.77 E-value=3.3e+02 Score=22.74 Aligned_cols=57 Identities=12% Similarity=0.001 Sum_probs=41.3
Q ss_pred HHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q psy6455 44 ITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGAL 100 (249)
Q Consensus 44 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~ 100 (249)
...-....|.+.+-+.-.+...-+....+.+...+|.+..|.-.|+.|--.-.-+.+
T Consensus 51 ~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~l 107 (344)
T PF06379_consen 51 WLWALLAIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIAL 107 (344)
T ss_pred HHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHH
Confidence 333445578777777766666666667788888999999999999999766544443
No 341
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=29.73 E-value=2.9e+02 Score=23.40 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=34.9
Q ss_pred HHHHHhhccccccccCCCCcchhhHHHHhHHHHH---HHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455 44 ITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMV---FGSYFWGCLADTQGRKITLIGALLVDGLC 106 (249)
Q Consensus 44 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~---i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 106 (249)
.-.....+....+++|+++.-.|.+.. .++.. +.++-.. .-||..+---+.+|..+..++
T Consensus 238 Ae~lv~sIe~~v~~~Glp~afiGvIIa--iv~~apE~~tAV~aA-~kNkmq~slnialGSsLq~il 300 (366)
T PRK10599 238 TKMNASPLETLLTSMNAPVAFTGFLVA--LLILSPEGLGALKAV-LNNQVQRAMNLFFGSVLATIS 300 (366)
T ss_pred HHHhHhhHHHHHHhcCCCHHHHHHHHH--HHHcchhHHHHHHHH-HcCchHHHHHHHHHHHHHHHH
Confidence 444455566677889999999987763 33332 3333333 456666655555555554443
No 342
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=29.29 E-value=2.2e+02 Score=20.52 Aligned_cols=30 Identities=13% Similarity=-0.214 Sum_probs=19.4
Q ss_pred HHHhHHHHHHHHHHHHhhhhhcchhHHHHH
Q psy6455 69 NAAPMLGMVFGSYFWGCLADTQGRKITLIG 98 (249)
Q Consensus 69 ~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~ 98 (249)
...++++..+.+...-.+..|..||+.-.+
T Consensus 67 ~f~~Sl~Ggl~S~~vM~ll~~~~~~~~S~~ 96 (148)
T PF07456_consen 67 SFLFSLAGGLLSLLVMALLKKLFKKKFSLI 96 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 345666777777777777777766554333
No 343
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=29.07 E-value=91 Score=15.99 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=13.7
Q ss_pred HHhHHHHHHHHHHHHhhhhh
Q psy6455 70 AAPMLGMVFGSYFWGCLADT 89 (249)
Q Consensus 70 ~~~~i~~~i~~~~~g~l~dr 89 (249)
.+..++..+.+++.+|+-+|
T Consensus 15 AAP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 15 AAPIIAGIIASLIVGWLRNR 34 (35)
T ss_pred HhHHHHHHHHHHHHHHHHhc
Confidence 44566677777777877665
No 344
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=29.04 E-value=2e+02 Score=19.84 Aligned_cols=22 Identities=14% Similarity=-0.066 Sum_probs=12.2
Q ss_pred HHHhhhcccccccccccccccc
Q psy6455 125 INGFAVTGTLGICFPYLGEFQP 146 (249)
Q Consensus 125 l~G~~~g~~~~~~~~~~~~~~~ 146 (249)
+.+.|..+.++.-.++..|...
T Consensus 62 ~l~tGflGgfTTFSTf~~e~~~ 83 (119)
T PRK14230 62 LLITGFLGSLTTLSGFSLETVT 83 (119)
T ss_pred HHHHHHhchHhhHHHHHHHHHH
Confidence 3344444456666667766654
No 345
>PRK04972 putative transporter; Provisional
Probab=28.78 E-value=4.4e+02 Score=23.79 Aligned_cols=90 Identities=12% Similarity=0.063 Sum_probs=43.4
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhcccccccccccc
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ-YYGVFLALRFINGFAVTGTLGICFPYLG 142 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~ 142 (249)
+.|+......+|..-|.-+..-+.. .|-+.. .++.++..+..+...+.. -..-+-..+.+-.++.+...+....++.
T Consensus 446 ~~GL~lFla~vGl~aG~~f~~~~~~-~g~~~~-~~g~~~t~~~~~~~~~~~~~~~k~~~~~~~G~~aG~~t~~~~l~~~~ 523 (558)
T PRK04972 446 EFGLMVFMAGVGLSAGSGINNGLGA-VGGQML-IAGLIVSLVPVVICFLFGAYVLRMNRALLFGAIMGARTCAPAMEIIS 523 (558)
T ss_pred HHhHHHHHHHHHHhhhHHHHHHHHH-hhHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCCcHHHHHHH
Confidence 3455555555666555555555533 443333 344444444433332222 1111222233334554556677777888
Q ss_pred cccccchhHHHHH
Q psy6455 143 EFQPTAYREKVLC 155 (249)
Q Consensus 143 ~~~~~~~r~~~~~ 155 (249)
|....+.-..+.+
T Consensus 524 ~~~~~~~~~~gYa 536 (558)
T PRK04972 524 DTARSNIPALGYA 536 (558)
T ss_pred hhcCCCCcccccH
Confidence 8876544433333
No 346
>PHA03239 envelope glycoprotein M; Provisional
Probab=28.68 E-value=3.9e+02 Score=23.17 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHhhhcccccccccccccccccc
Q psy6455 112 VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA 148 (249)
Q Consensus 112 ~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 148 (249)
+.+|+.....--.+..+..=...+..+-.+.|.+=.+
T Consensus 253 ~gNsF~v~~~~~v~~ai~~F~vL~iiyliv~E~vL~~ 289 (429)
T PHA03239 253 MALHFGLDIPKATSGALSMFIVLGIIYLMMAELTVAH 289 (429)
T ss_pred HhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333333333333344555666666665433
No 347
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=28.13 E-value=3.1e+02 Score=21.83 Aligned_cols=41 Identities=20% Similarity=0.080 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHH
Q psy6455 116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW 156 (249)
Q Consensus 116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 156 (249)
.|..++.-.+.=...|+......+.+.+.+|+++|-++.-+
T Consensus 16 ~~~~l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~ 56 (254)
T COG0861 16 AWVALLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFI 56 (254)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHH
Confidence 33333333344444577778888899999999877655443
No 348
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=28.11 E-value=1.1e+02 Score=26.77 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 190 SSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 190 ~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
.+||...+....+.+-.++.+-++
T Consensus 404 g~~~~~ilq~v~lvi~~lIY~PFv 427 (452)
T PRK10297 404 GSVAALLVALFNLGIATLIYLPFV 427 (452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 568776655544443333333333
No 349
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.93 E-value=1.9e+02 Score=19.29 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=6.6
Q ss_pred HHHHhhhh-hcchhHH
Q psy6455 81 YFWGCLAD-TQGRKIT 95 (249)
Q Consensus 81 ~~~g~l~d-r~Grr~~ 95 (249)
.+.|...| +++-+..
T Consensus 60 ~~lG~WLD~~~~t~~~ 75 (100)
T TIGR02230 60 VAVGIWLDRHYPSPFS 75 (100)
T ss_pred HHHHHHHHhhcCCCcH
Confidence 33444444 4554443
No 350
>PRK14206 camphor resistance protein CrcB; Provisional
Probab=27.89 E-value=2.1e+02 Score=19.87 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=15.3
Q ss_pred HHHHHhhhcccccccccccccccc
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQP 146 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~ 146 (249)
+.+.+.|..+.++.-.++..|...
T Consensus 67 ~~~l~tGf~GgfTTFSTf~~e~~~ 90 (127)
T PRK14206 67 RLFVMVGVCGGFTTFSSFSLQTLN 90 (127)
T ss_pred HHHHHHHHccccccHHHHHHHHHH
Confidence 344455555567777788888764
No 351
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=27.80 E-value=5.4e+02 Score=24.51 Aligned_cols=8 Identities=0% Similarity=-0.051 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q psy6455 192 WNLFVTLV 199 (249)
Q Consensus 192 w~~~~~~~ 199 (249)
|...+++.
T Consensus 130 ~~~ALLLG 137 (810)
T TIGR00844 130 FPASLLMG 137 (810)
T ss_pred HHHHHHHH
Confidence 33333333
No 352
>COG1288 Predicted membrane protein [Function unknown]
Probab=27.63 E-value=1.1e+02 Score=26.52 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=19.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhc--ccCChhHH
Q psy6455 188 LYSSWNLFVTLVSVPSILLALWLTR--FPESPKFL 220 (249)
Q Consensus 188 ~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 220 (249)
+..+||.+.++......+..+.++- ++++|...
T Consensus 214 sG~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~S 248 (481)
T COG1288 214 SGMGLRIVVWVVFTLISIIYVYWYASKVKKDPTLS 248 (481)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 4468999988877666555444322 45555433
No 353
>PRK14219 camphor resistance protein CrcB; Provisional
Probab=27.43 E-value=2.2e+02 Score=19.94 Aligned_cols=24 Identities=13% Similarity=-0.047 Sum_probs=14.6
Q ss_pred HHHHHhhhcccccccccccccccc
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQP 146 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~ 146 (249)
|.+.+.|..+.++...++..|...
T Consensus 65 ~~~l~tGf~GgfTTFSTf~~E~~~ 88 (132)
T PRK14219 65 ITGIGTGFIGSFTTFSTFSVETIQ 88 (132)
T ss_pred HHHHHHHHccchhhHHHHHHHHHH
Confidence 434444444556777777777764
No 354
>PRK14232 camphor resistance protein CrcB; Provisional
Probab=26.93 E-value=2.2e+02 Score=19.64 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=14.4
Q ss_pred HHHHhhhccccccccccccccccc
Q psy6455 124 FINGFAVTGTLGICFPYLGEFQPT 147 (249)
Q Consensus 124 ~l~G~~~g~~~~~~~~~~~~~~~~ 147 (249)
.+.+.|..+.++.-.++..|...-
T Consensus 61 ~~l~tGf~GgfTTFSTf~~e~~~l 84 (120)
T PRK14232 61 LLLGDGFLGAYTTFSTFMYEGFNL 84 (120)
T ss_pred HHHHHHhcccchhHHHHHHHHHHH
Confidence 333444445567777788777653
No 355
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=26.89 E-value=2e+02 Score=19.36 Aligned_cols=80 Identities=18% Similarity=0.086 Sum_probs=49.6
Q ss_pred hHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhccccccccccccccc
Q psy6455 67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QYYGVFLALRFINGFAVTGTLGICFPYLGEFQ 145 (249)
Q Consensus 67 ~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~ 145 (249)
|+.....+..=+..-..=+.+|.+.|+...+...+...++..+.+.+ .+.+.=++--.-.|+|..+.......+-.|-.
T Consensus 4 w~~L~lAi~~EV~~~~~lK~s~gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l 83 (106)
T COG2076 4 WIYLLLAILLEVVGTTLLKYSDGFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESL 83 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 33333344444555556689999999998888888888887777765 34444444445556665555555555555544
Q ss_pred c
Q psy6455 146 P 146 (249)
Q Consensus 146 ~ 146 (249)
+
T Consensus 84 ~ 84 (106)
T COG2076 84 S 84 (106)
T ss_pred C
Confidence 3
No 356
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=26.13 E-value=2.7e+02 Score=20.50 Aligned_cols=30 Identities=20% Similarity=0.095 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy6455 28 ILVIFGGLLYAYAAISITVLSFVLPSAQCD 57 (249)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (249)
..+.-..+..+.+.-....+....+.+...
T Consensus 99 ~~f~~g~~~~~~NPk~il~~~~~~~~~~~~ 128 (191)
T PF01810_consen 99 KSFLTGFLLNLLNPKAILFWLAVFPQFISP 128 (191)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhcccCc
Confidence 344445555555555555555566666554
No 357
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=26.04 E-value=74 Score=21.29 Aligned_cols=48 Identities=13% Similarity=-0.145 Sum_probs=34.4
Q ss_pred CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455 62 SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA 109 (249)
Q Consensus 62 ~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 109 (249)
....|-+..++.-.+.+.++++++..|+.-+-+-=..|..+..++..+
T Consensus 54 ~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~v 101 (109)
T COG1742 54 AAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAV 101 (109)
T ss_pred chhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceee
Confidence 345667778888888999999999999876666555665555554433
No 358
>PRK14212 camphor resistance protein CrcB; Provisional
Probab=25.88 E-value=2.3e+02 Score=19.71 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=14.8
Q ss_pred HHHHHhhhccccccccccccccccc
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPT 147 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~ 147 (249)
|.+.+.|..+.++.-.++..|...-
T Consensus 66 ~~~l~tGflGgfTTFSTf~~E~~~l 90 (128)
T PRK14212 66 KLMLTAGFLGAFTTFSTFSYETLDC 90 (128)
T ss_pred HHHHHhhHhcCcccHHHHHHHHHHH
Confidence 3334444445567777777777644
No 359
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.80 E-value=1.5e+02 Score=17.37 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCC
Q psy6455 190 SSWNLFVTLVSVPSILLALWLTRFPES 216 (249)
Q Consensus 190 ~~w~~~~~~~~~~~~~~~~~~~~~~~~ 216 (249)
.++.....+..+..++..++....|++
T Consensus 29 ~n~~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 29 YNFTTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456666666666666666665455543
No 360
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=25.74 E-value=23 Score=18.32 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=0.0
Q ss_pred hhhcchhHHHHH
Q psy6455 87 ADTQGRKITLIG 98 (249)
Q Consensus 87 ~dr~Grr~~~~~ 98 (249)
+|||||-....+
T Consensus 3 sd~FGRd~~~c~ 14 (36)
T PF08080_consen 3 SDRFGRDLSYCF 14 (36)
T ss_dssp ------------
T ss_pred cchhcchhhHhh
Confidence 678888665443
No 361
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=25.29 E-value=2.7e+02 Score=20.18 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=21.8
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhhhhcchhHH
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT 95 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~ 95 (249)
+.++....+.+|.-.|.-+..-+...-|-++.
T Consensus 57 ~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~ 88 (154)
T TIGR01625 57 EFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRI 88 (154)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence 57788888888888888777766553333443
No 362
>KOG4255|consensus
Probab=25.20 E-value=4.2e+02 Score=22.36 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=46.3
Q ss_pred hccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhh---h-hcchhHHHHHHHHHHHHHHHHHHhhh----------H
Q psy6455 50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLA---D-TQGRKITLIGALLVDGLCGIASSVAQ----------Y 115 (249)
Q Consensus 50 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~---d-r~Grr~~~~~~~~~~~i~~~~~~~~~----------~ 115 (249)
-+|.+.++..-.-..-++......++... .++.-.+- . +...-+++++-..+..++.++.++.- .
T Consensus 33 ~lp~lv~elpe~wslpsyl~vvVqla~lg-pLi~tllhk~~~~~i~~VPiif~ll~~a~v~~l~laflW~~ts~V~g~~h 111 (439)
T KOG4255|consen 33 ELPLLVKELPEGWSLPSYLSVVVQLANLG-PLIVTLLHKGAPGTIPTVPIIFVLLLLACVCQLGLAFLWHDTSPVFGALH 111 (439)
T ss_pred ehhHHHhhcCcccccchHHHHHHHHHcch-hHHHHHHHhhCCCcCCCCCchhHHHHHHHHHHHHHHHHHhcchhhhcCcc
Confidence 34556666654445555555555555432 22222221 1 11112333333344466666655421 1
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccc
Q psy6455 116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPT 147 (249)
Q Consensus 116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~ 147 (249)
-|.++...|...+........-...+++.-|.
T Consensus 112 S~afl~L~F~LAivdc~SnVtFLPFMs~lpp~ 143 (439)
T KOG4255|consen 112 SWAFLSLLFGLAIVDCTSNVTFLPFMSQLPPA 143 (439)
T ss_pred hHHHHHHHHHHHHHHhhccchhhhhhhhCChH
Confidence 24455555555555555555556677766543
No 363
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=24.76 E-value=1.1e+02 Score=19.92 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=16.6
Q ss_pred HHHhHHHHHHHHHHHHhhhhhcchh
Q psy6455 69 NAAPMLGMVFGSYFWGCLADTQGRK 93 (249)
Q Consensus 69 ~~~~~i~~~i~~~~~g~l~dr~Grr 93 (249)
.....+...+.+.+.|.+.||..||
T Consensus 81 ~~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 81 DWITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444456778889999999998775
No 364
>PRK14228 camphor resistance protein CrcB; Provisional
Probab=24.57 E-value=2.4e+02 Score=19.44 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=13.2
Q ss_pred HHHhhhccccccccccccccccc
Q psy6455 125 INGFAVTGTLGICFPYLGEFQPT 147 (249)
Q Consensus 125 l~G~~~g~~~~~~~~~~~~~~~~ 147 (249)
+.+.|..+.++...++..|...-
T Consensus 66 ~l~tGf~GgfTTFSTf~~e~~~l 88 (122)
T PRK14228 66 LAGTAFVGAYTTFSTWMLETQRL 88 (122)
T ss_pred HHHHHHhcchhhHHHHHHHHHHH
Confidence 33344445566677777776643
No 365
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=24.43 E-value=2.3e+02 Score=19.06 Aligned_cols=14 Identities=21% Similarity=-0.116 Sum_probs=7.6
Q ss_pred hhhcchhHHHHHHH
Q psy6455 87 ADTQGRKITLIGAL 100 (249)
Q Consensus 87 ~dr~Grr~~~~~~~ 100 (249)
..|.+||.-.....
T Consensus 6 ~GR~~R~~fw~~~l 19 (120)
T PF05656_consen 6 KGRISRKEFWWFFL 19 (120)
T ss_pred cCCcCHHHHHHHHH
Confidence 34667776544433
No 366
>TIGR03727 urea_t_UrtC_arc urea ABC transporter, permease protein UrtC, archaeal type. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtC subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=24.23 E-value=4.2e+02 Score=22.36 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhh
Q psy6455 117 GVFLALRFINGFA 129 (249)
Q Consensus 117 ~~l~~~~~l~G~~ 129 (249)
..+.++-++.|++
T Consensus 240 ~~f~is~~lagla 252 (364)
T TIGR03727 240 VVFTFGGALAGLS 252 (364)
T ss_pred HHHHHHHHHHHHH
Confidence 3555666666665
No 367
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.32 E-value=3.9e+02 Score=21.39 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhh
Q psy6455 115 YYGVFLALRFINGFA 129 (249)
Q Consensus 115 ~~~~l~~~~~l~G~~ 129 (249)
+.+.+.+..++.+++
T Consensus 22 ~~~l~~~~~~~~~F~ 36 (284)
T PF12805_consen 22 YPWLLILVLALLTFF 36 (284)
T ss_pred ccHHHHHHHHHHHHH
Confidence 344444444444444
No 368
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=23.25 E-value=2.3e+02 Score=23.54 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=35.3
Q ss_pred hhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh
Q psy6455 66 GWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV 112 (249)
Q Consensus 66 ~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 112 (249)
.|.....++|..++..+.+++.|++|....+.++.+...++.+....
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 46666677777788888889999999998888888777777665543
No 369
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=22.99 E-value=1.8e+02 Score=17.31 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455 78 FGSYFWGCLADTQGRKITLIGALLVD 103 (249)
Q Consensus 78 i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (249)
+|..++.++.++++++--.+.+.++.
T Consensus 39 ~G~~~G~~~~~~~~~~~~~igg~iLi 64 (67)
T PF02659_consen 39 LGLLLGRRLGRFIGSYAEWIGGIILI 64 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555554444444433
No 370
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=22.91 E-value=1.4e+02 Score=18.17 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=31.8
Q ss_pred hccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh
Q psy6455 50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK 93 (249)
Q Consensus 50 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr 93 (249)
..|.+.--+|.+..+++.+....++...+-..+.-++-||+=+|
T Consensus 21 ~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~FD~~~~r 64 (67)
T PF05232_consen 21 SVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNWLFDKIEPR 64 (67)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444666777888888888888888888888888887554
No 371
>COG5346 Predicted membrane protein [Function unknown]
Probab=22.89 E-value=2.7e+02 Score=19.31 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=14.1
Q ss_pred HHHHhhhhhcchhHHHHHHHHH
Q psy6455 81 YFWGCLADTQGRKITLIGALLV 102 (249)
Q Consensus 81 ~~~g~l~dr~Grr~~~~~~~~~ 102 (249)
-.-|.+..|+.|+-.+++|..+
T Consensus 80 q~r~~~~~~~tril~liFgi~L 101 (136)
T COG5346 80 QRRGQLYAKLTRILLLIFGIFL 101 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777766655
No 372
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=22.66 E-value=1.4e+02 Score=18.89 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhhcchhHHHHHH
Q psy6455 77 VFGSYFWGCLADTQGRKITLIGA 99 (249)
Q Consensus 77 ~i~~~~~g~l~dr~Grr~~~~~~ 99 (249)
.+-+.++-++..|.|+|+.-+++
T Consensus 14 G~IA~~GD~iG~kvGKkrlslFg 36 (79)
T PF11283_consen 14 GLIAYLGDRIGSKVGKKRLSLFG 36 (79)
T ss_pred HHHHHHHHHHHHHHhHHHhhhhc
Confidence 34455555666667777765544
No 373
>PRK03818 putative transporter; Validated
Probab=22.40 E-value=5.8e+02 Score=23.00 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=9.7
Q ss_pred hhhHHHHhHHHHHHHHHHHHhh
Q psy6455 65 KGWLNAAPMLGMVFGSYFWGCL 86 (249)
Q Consensus 65 ~~~~~~~~~i~~~i~~~~~g~l 86 (249)
.++....+.+|.-.|.-+..-+
T Consensus 65 ~gl~lFv~~vGl~~Gp~f~~~l 86 (552)
T PRK03818 65 FGLILFVYTIGIQVGPGFFSSL 86 (552)
T ss_pred HHHHHHHHHHhhcccHHHHHHH
Confidence 3444444444444444444433
No 374
>PLN02776 prenyltransferase
Probab=22.26 E-value=4.7e+02 Score=21.90 Aligned_cols=22 Identities=9% Similarity=-0.109 Sum_probs=12.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q psy6455 91 GRKITLIGALLVDGLCGIASSV 112 (249)
Q Consensus 91 Grr~~~~~~~~~~~i~~~~~~~ 112 (249)
.++..+.++.++..++..+..+
T Consensus 74 s~~~A~~~~~~l~~~g~~~l~~ 95 (341)
T PLN02776 74 SVPHAVAWAVVVGAAGVALLAY 95 (341)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666544433
No 375
>PRK14208 camphor resistance protein CrcB; Provisional
Probab=22.10 E-value=2.8e+02 Score=19.26 Aligned_cols=24 Identities=17% Similarity=0.103 Sum_probs=14.0
Q ss_pred HHHHHhhhcccccccccccccccc
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQP 146 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~ 146 (249)
|.+.+.|.-+.++.-.++..|...
T Consensus 66 ~~~l~tGflGgfTTFSTf~~e~~~ 89 (126)
T PRK14208 66 RLFLAAGVMGGFTTYSSFNYETLA 89 (126)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHH
Confidence 444444444556777777777754
No 376
>PRK14227 camphor resistance protein CrcB; Provisional
Probab=22.07 E-value=2.8e+02 Score=19.20 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=14.4
Q ss_pred HHHHhhhccccccccccccccccc
Q psy6455 124 FINGFAVTGTLGICFPYLGEFQPT 147 (249)
Q Consensus 124 ~l~G~~~g~~~~~~~~~~~~~~~~ 147 (249)
.+.+.|..+.++.-.++..|...-
T Consensus 67 l~l~tGf~GgfTTFSTf~~E~~~l 90 (124)
T PRK14227 67 LFVAVGFCGSFTTFSSFTYETIAL 90 (124)
T ss_pred HHHHhhHhcccccHHHHHHHHHHH
Confidence 334444445567777777777643
No 377
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.06 E-value=3.2e+02 Score=21.38 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHHHhhhhhcchhHHHHH
Q psy6455 69 NAAPMLGMVFGSYFWGCLADTQGRKITLIG 98 (249)
Q Consensus 69 ~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~ 98 (249)
++.+.+++.+....+-.+.-|+|||+++-.
T Consensus 34 ns~yyfv~Il~atlfill~Ik~~~kwI~r~ 63 (277)
T COG3389 34 NSVYYFVYILVATLFILLAIKLGRKWIFRG 63 (277)
T ss_pred CceeeehhHHHHHHHHHhheeecceeeehh
Confidence 556667777777788888899999976544
No 378
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=21.55 E-value=2.4e+02 Score=18.22 Aligned_cols=65 Identities=11% Similarity=-0.049 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhh
Q psy6455 25 FHYILVIFGGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPML-GMVFGSYFWGCLADT 89 (249)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr 89 (249)
.+++....+....+...+.......+.|.+... ..-.....|++.....+ ...+......+.++|
T Consensus 13 ~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv~~An~ 79 (91)
T PF04341_consen 13 RRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWLYVRRANR 79 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344444555555555566666677777775443 22124455555444332 222333333444444
No 379
>PRK14200 camphor resistance protein CrcB; Provisional
Probab=21.40 E-value=2.9e+02 Score=19.22 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=14.3
Q ss_pred HHHHHhhhccccccccccccccccc
Q psy6455 123 RFINGFAVTGTLGICFPYLGEFQPT 147 (249)
Q Consensus 123 ~~l~G~~~g~~~~~~~~~~~~~~~~ 147 (249)
|.+.+.|..+.++.-.++..|...-
T Consensus 69 ~~~l~tGf~GgfTTFSTf~~E~~~l 93 (127)
T PRK14200 69 RQIIGLGFLGALTTFSTFSMDNVLL 93 (127)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHH
Confidence 3344444445567677777777643
No 380
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=21.35 E-value=2.6e+02 Score=18.66 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=18.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455 188 LYSSWNLFVTLVSVPSILLALW-LTRFPESP 217 (249)
Q Consensus 188 ~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~ 217 (249)
+..+|+.++++...++++.+.+ +...||+.
T Consensus 55 d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 55 DWEGWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5568999888865555544444 44457653
No 381
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.01 E-value=2.2e+02 Score=17.69 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=32.5
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccccccc
Q psy6455 86 LADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPT 147 (249)
Q Consensus 86 l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~ 147 (249)
--|+-.|++-+.+...+-..+.++..+....+++-+..+ ..+...|-....+++--++
T Consensus 10 ~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~~~la~~~~----~~av~LPwvAVviAN~~~~ 67 (73)
T PF11298_consen 10 SQDQRRRRRRYLIMMGIRIPCFVLAAVVYRLGWLAWAII----VGAVPLPWVAVVIANARPP 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHhcccchhheeeccCCCC
Confidence 346677888888888887777777666554322211111 1234455555555554443
No 382
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=20.61 E-value=4.9e+02 Score=21.47 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhccccccccc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455 117 GVFLALRFINGFAVTGTLGICFP-YLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI 176 (249)
Q Consensus 117 ~~l~~~~~l~G~~~g~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 176 (249)
..+.++-++.|++ |..++.... ...|.+..+ ...-.-+.......|...||.++..+.
T Consensus 209 ~aF~isa~~AGiA-GaL~a~~~~~v~p~~f~~~-~S~~~l~~vvlGG~Gt~~G~v~Ga~l~ 267 (314)
T COG4177 209 LAFVISAAIAGIA-GALYALYLGFVSPESFSFT-LSIEVLAMVVLGGAGTLFGALLGAVLV 267 (314)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhceeChhhccHH-HHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 4556666777775 333333322 222333321 222222233445567777888777765
No 383
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=20.38 E-value=3.5e+02 Score=21.60 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhcccccccccccccccccchhHHHHH
Q psy6455 118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLC 155 (249)
Q Consensus 118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 155 (249)
.++..-|+.|+--+....=..+.+..+...+++....+
T Consensus 3 ~ll~laf~~G~~HAl~PgH~kai~~~~~~~~~~~~~~g 40 (282)
T PF03824_consen 3 SLLLLAFLYGLLHALGPGHGKAIIASYLLSSRRALRVG 40 (282)
T ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHHhhcCchHHHH
Confidence 34555566666555443333333443333334433333
No 384
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=20.24 E-value=3.2e+02 Score=19.15 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhh
Q psy6455 38 AYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCL 86 (249)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l 86 (249)
+.......+....+.++..+-.++....-|=...+.+-+.+-++-+|.+
T Consensus 53 vLw~vM~~iFd~CIDsWkAdpeLnn~rymWNilMYaIPy~L~Ala~GFl 101 (141)
T PRK13743 53 VLWVIMHSIFDACIDSWKADPELNNFRYMWNILMYVIPYTLWALAAGFL 101 (141)
T ss_pred HHHHHHHHHHHHHHHhhhcChhhhhHHHHHHHHHHHHHHHHHHHHhchh
Confidence 3333444444555555554444444444455555555555555544444
No 385
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=20.11 E-value=4.9e+02 Score=21.30 Aligned_cols=10 Identities=10% Similarity=-0.070 Sum_probs=4.9
Q ss_pred cccccchhHH
Q psy6455 143 EFQPTAYREK 152 (249)
Q Consensus 143 ~~~~~~~r~~ 152 (249)
.=+|-++||.
T Consensus 138 gP~~l~y~gL 147 (304)
T PRK07419 138 PPFRLGYQGL 147 (304)
T ss_pred CCcccCCCCc
Confidence 3344456664
No 386
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=20.04 E-value=2e+02 Score=19.79 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=4.7
Q ss_pred hhcccCChh
Q psy6455 210 LTRFPESPK 218 (249)
Q Consensus 210 ~~~~~~~~~ 218 (249)
++.+|+.|.
T Consensus 60 ~~~lp~~P~ 68 (118)
T PRK10697 60 SFALDPMPD 68 (118)
T ss_pred HHhccCCcc
Confidence 444665553
No 387
>PRK08168 NADH dehydrogenase subunit L; Provisional
Probab=20.02 E-value=6.4e+02 Score=22.57 Aligned_cols=55 Identities=20% Similarity=0.121 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy6455 74 LGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129 (249)
Q Consensus 74 i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~ 129 (249)
++..+...-.+++.+.-+ ++-+.....+...+......++|+..++++.-+.+++
T Consensus 81 v~~~v~~ys~~Ym~~~~~-~~~f~~llll~l~g~~~lv~S~dL~~l~v~wEl~sL~ 135 (516)
T PRK08168 81 LGWVIGRFSHRYLQGEPG-QRRYVRALAGVLAAVHLLVLSDHLLVLIAAWAAISLA 135 (516)
T ss_pred HHHHHHHHHHHHhccCcc-ccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333333445543322 2233334444555556667788888888877776665
No 388
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=20.01 E-value=1.9e+02 Score=16.37 Aligned_cols=26 Identities=8% Similarity=-0.124 Sum_probs=15.2
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHH
Q psy6455 85 CLADTQGRKITLIGALLVDGLCGIAS 110 (249)
Q Consensus 85 ~l~dr~Grr~~~~~~~~~~~i~~~~~ 110 (249)
..-.|+-|.+.-++|+++.++..++.
T Consensus 7 ~~~~~f~~nk~a~~gl~il~~~vl~a 32 (56)
T PF12911_consen 7 DAWRRFRRNKLAVIGLIILLILVLLA 32 (56)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 34456666777777766665544433
Done!