Query psy6455
Match_columns 249
No_of_seqs 254 out of 1564
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 18:20:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 1.2E-26 4.3E-31 198.0 18.8 210 24-236 8-243 (491)
2 3o7q_A L-fucose-proton symport 99.9 6.7E-26 2.3E-30 190.6 15.6 194 25-218 23-236 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.9E-25 6.5E-30 188.4 10.7 184 24-219 24-213 (451)
4 2gfp_A EMRD, multidrug resista 99.9 7.1E-24 2.4E-28 175.1 9.7 177 32-219 4-181 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 9E-22 3.1E-26 168.0 14.4 143 58-211 49-194 (491)
6 2xut_A Proton/peptide symporte 99.8 2.6E-20 8.7E-25 160.3 13.4 163 39-212 23-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.7 1.5E-16 5.3E-21 133.9 16.9 170 33-213 257-433 (451)
8 2cfq_A Lactose permease; trans 99.7 2.4E-16 8.1E-21 132.0 12.5 145 62-217 258-404 (417)
9 3o7q_A L-fucose-proton symport 99.6 2.1E-15 7.1E-20 126.5 11.9 154 44-211 274-430 (438)
10 4gc0_A D-xylose-proton symport 99.6 5.9E-15 2E-19 125.7 8.5 171 42-218 291-468 (491)
11 2cfq_A Lactose permease; trans 99.6 2.8E-16 9.6E-21 131.6 0.3 160 43-214 22-188 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.6 8.9E-15 3E-19 124.6 9.2 157 45-213 300-471 (491)
13 2gfp_A EMRD, multidrug resista 99.4 1.6E-13 5.3E-18 113.0 5.0 154 32-199 203-362 (375)
14 2xut_A Proton/peptide symporte 99.1 6.2E-11 2.1E-15 101.7 4.1 141 64-213 336-502 (524)
15 2g9p_A Antimicrobial peptide l 72.6 1.7 6E-05 19.2 1.2 14 82-95 2-15 (26)
16 4dve_A Biotin transporter BIOY 48.3 62 0.0021 23.5 6.5 25 69-93 99-123 (198)
17 3qnq_A PTS system, cellobiose- 32.8 20 0.00068 29.8 2.0 9 191-199 397-405 (442)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=1.2e-26 Score=197.99 Aligned_cols=210 Identities=22% Similarity=0.353 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCC--------CCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHH
Q psy6455 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM--------TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT 95 (249)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~ 95 (249)
++.+.+.+++.++.+..+++..+++..+|.+.++++. +....+++.+.+.+|..+|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4445555666777788889999999888888776643 23456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------------------hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHH
Q psy6455 96 LIGALLVDGLCGIASS------------------VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWL 157 (249)
Q Consensus 96 ~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 157 (249)
++++.++..++.++++ ++++++.++++|+++|++.|+..+....+++|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999887 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChHHHHHHHHHH
Q psy6455 158 EMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQM 236 (249)
Q Consensus 158 ~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (249)
+.+..+|..+++.++..+...... .......||..+.+..+..++..+..++.||+|++...+++.+++++.+++.
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDA---SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCT---TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhcccccc---ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence 999999999999988777543211 1112357899998888888888888888999999998888777766555544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=6.7e-26 Score=190.65 Aligned_cols=194 Identities=19% Similarity=0.146 Sum_probs=161.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455 25 FHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG 104 (249)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (249)
+++..+..+.+..+..++.....++.+|.+.+++|++..+.+++.+.+.++..++++++|+++||+|||++++++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 34455666667777788888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc
Q psy6455 105 LCGIAS---SVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI-PLNL 180 (249)
Q Consensus 105 i~~~~~---~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~-~~~~ 180 (249)
++.+++ .++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+. +...
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999988 788999999999999999999999999999999999999999999999999999999999999987 3321
Q ss_pred ccc--------Cc------ccccchhHHHHHHHHHHHHHHHHHhhc--ccCChh
Q psy6455 181 RIE--------TP------YFLYSSWNLFVTLVSVPSILLALWLTR--FPESPK 218 (249)
Q Consensus 181 ~~~--------~~------~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~ 218 (249)
... .. .....+||+.|++.+++.++..+..++ .||+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 000 00 000012999998887777666655444 355543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=1.9e-25 Score=188.44 Aligned_cols=184 Identities=14% Similarity=0.198 Sum_probs=164.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD 103 (249)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (249)
+.+++.+....+..+...+......+.+|.+.+++ .+..+.+++.+.+.++..++++++|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 44566677777778888888888889999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455 104 GLCGIASSV----AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN 179 (249)
Q Consensus 104 ~i~~~~~~~----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 179 (249)
+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+....+|.+++|.+++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--- 179 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM--- 179 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH---
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccCcccccch-hHHHHHHHHHHHHHHHHH-hhcccCChhH
Q psy6455 180 LRIETPYFLYSS-WNLFVTLVSVPSILLALW-LTRFPESPKF 219 (249)
Q Consensus 180 ~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 219 (249)
+..+ ||+.|++.+++.++..++ .+++||+++.
T Consensus 180 --------~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 180 --------AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp --------HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred --------HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence 3356 999999998888776655 4557776653
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=7.1e-24 Score=175.05 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS 111 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 111 (249)
...+..+...+......+.+|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34455666677788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455 112 VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS 191 (249)
Q Consensus 112 ~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~ 191 (249)
++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++++. +..+
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------~~~~ 152 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD-----------TMWN 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS-----------CHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----------Hhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999986 4468
Q ss_pred hHHHHHHHHHHHHHHHHH-hhcccCChhH
Q psy6455 192 WNLFVTLVSVPSILLALW-LTRFPESPKF 219 (249)
Q Consensus 192 w~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 219 (249)
||+.|++.++..++..+. .+++||+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 153 WRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999999998888777774 4556776543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.87 E-value=9e-22 Score=167.98 Aligned_cols=143 Identities=10% Similarity=-0.001 Sum_probs=132.3
Q ss_pred cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccc
Q psy6455 58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGI 136 (249)
Q Consensus 58 ~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~ 136 (249)
+|.+..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.+++.++++++.++++|++.|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred cccccccccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Q psy6455 137 CFPYLGEFQPTAY--REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLT 211 (249)
Q Consensus 137 ~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 211 (249)
..++++|++|+++ |+.+.++++....+|..++|.+++.+. +..+||+.|++.++..++..+..+
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ-----------EAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH-----------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 778888899999999999999999997 446899999998877776666544
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83 E-value=2.6e-20 Score=160.27 Aligned_cols=163 Identities=11% Similarity=0.043 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhhccc-cccccC------CCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHHHHHHHHH
Q psy6455 39 YAAISITVLSFVLPS-AQCDFG------MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLCGIAS 110 (249)
Q Consensus 39 ~~~~~~~~~~~~~~~-~~~~~~------~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~ 110 (249)
+..+..+.....++. +.+++| .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.+++.+++
T Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (524)
T 2xut_A 23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL 102 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 333344444444443 566788 9999999999999999999999999999999 99999999999999999999
Q ss_pred Hhhh-HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHH---HHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455 111 SVAQ-YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW---LEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186 (249)
Q Consensus 111 ~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 186 (249)
.+++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. ++....+|..++|.+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---------- 172 (524)
T 2xut_A 103 AIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL---------- 172 (524)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH----------
T ss_pred HHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 9998 999999999999999999999999999999999999876666 88889999999999998886
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455 187 FLYSSWNLFVTLVSVPSILLALWLTR 212 (249)
Q Consensus 187 ~~~~~w~~~~~~~~~~~~~~~~~~~~ 212 (249)
+..+|++.|++.+++.++..+..++
T Consensus 173 -~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 173 -KNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp -HTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred -ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999988887776665443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.73 E-value=1.5e-16 Score=133.86 Aligned_cols=170 Identities=12% Similarity=0.063 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc--chhHHHHHHHHHHH-HHHH
Q psy6455 33 GGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ--GRKITLIGALLVDG-LCGI 108 (249)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~ 108 (249)
..+..++..........+.|.+.++ +|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++.. ++.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 3334444444555566667776665 899999999999999999999999999999999 99999888877766 6666
Q ss_pred HHHhh--hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccCc
Q psy6455 109 ASSVA--QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTG-GIIVLPAVAWLLIPLNLRIETP 185 (249)
Q Consensus 109 ~~~~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~~~~ 185 (249)
+..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~--------- 407 (451)
T 1pw4_A 337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV--------- 407 (451)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 65555 36777778888999988888888889999999999999999999999999 9999999999997
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 186 YFLYSSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 186 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
+..+|+..|++.+++.++..++.++.
T Consensus 408 --~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 408 --DFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp --HSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999998888888777765544
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.68 E-value=2.4e-16 Score=132.02 Aligned_cols=145 Identities=15% Similarity=0.086 Sum_probs=119.1
Q ss_pred CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccc
Q psy6455 62 SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYL 141 (249)
Q Consensus 62 ~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~ 141 (249)
....++..+...++..++.++.|+++||+|||+++..+.++.+++.+...+.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888899999999999999999999998888888777777777777777777788887666667778899
Q ss_pred ccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc-ccCCh
Q psy6455 142 GEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPESP 217 (249)
Q Consensus 142 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~ 217 (249)
+|.+|++.|+++.++ ++....+|..++|.+++++. +..+++..|.+.+++.++..+..++ .||++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~-----------~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY-----------ESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH-----------HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH-----------HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999998 58888899999999999887 3357888888888888877766444 45543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.63 E-value=2.1e-15 Score=126.54 Aligned_cols=154 Identities=10% Similarity=-0.065 Sum_probs=122.0
Q ss_pred HHHHHhhcccc-ccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6455 44 ITVLSFVLPSA-QCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA 121 (249)
Q Consensus 44 ~~~~~~~~~~~-~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 121 (249)
........|.+ .++ +|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.+..
T Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (438)
T 3o7q_A 274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA 353 (438)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 33444445555 544 6999999999999999999999999999999999999999999999988888888777665444
Q ss_pred HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch-hHHHHHHHH
Q psy6455 122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS-WNLFVTLVS 200 (249)
Q Consensus 122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~-w~~~~~~~~ 200 (249)
.++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+++.+ ..+ ++..|++.+
T Consensus 354 -~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~-----------~~g~~~~~~~~~~ 419 (438)
T 3o7q_A 354 -LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD-----------AAGNIPTAELIPA 419 (438)
T ss_dssp -HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH-----------HHTSSGGGGHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH-----------HhcchHHHHHHHH
Confidence 47888988988999999999999866 888888766 556999999999999973 345 777777765
Q ss_pred HHHHHHHHHhh
Q psy6455 201 VPSILLALWLT 211 (249)
Q Consensus 201 ~~~~~~~~~~~ 211 (249)
+..++..+..+
T Consensus 420 ~~~~~~~~~~~ 430 (438)
T 3o7q_A 420 LCFAVIFIFAR 430 (438)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.56 E-value=5.9e-15 Score=125.67 Aligned_cols=171 Identities=16% Similarity=0.051 Sum_probs=120.1
Q ss_pred HHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh-----HH
Q psy6455 42 ISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ-----YY 116 (249)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-----~~ 116 (249)
.....+..+.+.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+...... +.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 370 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence 3344455566777777887777777788888889999999999999999999999999888887776654321 22
Q ss_pred HHHH-HHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455 117 GVFL-ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF 195 (249)
Q Consensus 117 ~~l~-~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~ 195 (249)
..+. ...+..+++. ...+..+.+.+|.+|++.|++++++.+....++..+++.+.+.+.+.... ....++...
T Consensus 371 ~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-----~~~~~~~~~ 444 (491)
T 4gc0_A 371 VALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-----VAHFHNGFS 444 (491)
T ss_dssp HHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH-----HHHHTTCHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhHH
Confidence 2222 2222223332 33466778999999999999999999999899999988877666421100 011244556
Q ss_pred HHHHHHHHHHHHHH-hhcccCChh
Q psy6455 196 VTLVSVPSILLALW-LTRFPESPK 218 (249)
Q Consensus 196 ~~~~~~~~~~~~~~-~~~~~~~~~ 218 (249)
|++.++++++..+. ++++||++.
T Consensus 445 ~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 445 YWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHheecCCCC
Confidence 77777777777665 566899854
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.56 E-value=2.8e-16 Score=131.57 Aligned_cols=160 Identities=15% Similarity=0.035 Sum_probs=108.8
Q ss_pred HHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH---HHhhhHHH-
Q psy6455 43 SITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA---SSVAQYYG- 117 (249)
Q Consensus 43 ~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~- 117 (249)
......+++|.+ .+++|.+..+.+++.+.+.++..++++++|+++||+|||++++++.++..+.... ..+.+...
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566664 4569999999999999999999999999999999999999999888776543211 12222211
Q ss_pred HHHHHHHHHHhhhccccccccccccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455 118 VFLALRFINGFAVTGTLGICFPYLGEFQPT--AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF 195 (249)
Q Consensus 118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~ 195 (249)
.+...+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++++. + .+|++.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~-----------~-~~~~~~ 169 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF-----------T-INNQFV 169 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH-----------H-HCSHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH-----------H-hchhHH
Confidence 133455555555554444444444455443 34566667777777889999999999885 2 468999
Q ss_pred HHHHHHHHHHHHHHhhccc
Q psy6455 196 VTLVSVPSILLALWLTRFP 214 (249)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~ 214 (249)
|++.++..++..+..++.+
T Consensus 170 f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 170 FWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp HTTTTTTTTTHHHHSCSSC
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9887776555555444443
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.56 E-value=8.9e-15 Score=124.63 Aligned_cols=157 Identities=11% Similarity=0.073 Sum_probs=121.6
Q ss_pred HHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHH-----HHHHHHHHHHHHHHhhh----
Q psy6455 45 TVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLI-----GALLVDGLCGIASSVAQ---- 114 (249)
Q Consensus 45 ~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~~---- 114 (249)
......+|.+.+ .++.+....+++.+...++..++.++.|++.||+|||+... .+.++.+++.++..+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG 379 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444444443 46777678899999999999999999999999999986554 77777777766665543
Q ss_pred -----HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455 115 -----YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY 189 (249)
Q Consensus 115 -----~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~ 189 (249)
+.+.+.+..++.|++.+...+....++.|.+|++.|+++.++.+....+|..+++.+.+.+.+
T Consensus 380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~------------ 447 (491)
T 4aps_A 380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA------------ 447 (491)
T ss_dssp CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG------------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 566777888899999998899999999999999999999999999999999999999888742
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcc
Q psy6455 190 SSWNLFVTLVSVPSILLALWLTRF 213 (249)
Q Consensus 190 ~~w~~~~~~~~~~~~~~~~~~~~~ 213 (249)
.++...|.+.+++.++..+..+++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777666654443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.40 E-value=1.6e-13 Score=112.97 Aligned_cols=154 Identities=12% Similarity=-0.008 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH-HHHHHH-
Q psy6455 32 FGGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV-DGLCGI- 108 (249)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~- 108 (249)
...+..+.............|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|++ +..+... ...+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~ 280 (375)
T 2gfp_A 203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLM 280 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 33344444455566667778887666 899999999999999999999999999999999983 2333332 222222
Q ss_pred -HHHh--hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Q psy6455 109 -ASSV--AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP 185 (249)
Q Consensus 109 -~~~~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 185 (249)
.... .++.+.+.+..++.|++.+...+...+++.|..| ++|+++.++.+....+|..++|.+.+.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~--------- 350 (375)
T 2gfp_A 281 WIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP--------- 350 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH---------
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 2222 2366777788889999999999999999999998 89999999999999999999999988886
Q ss_pred ccccchhHHHHHHH
Q psy6455 186 YFLYSSWNLFVTLV 199 (249)
Q Consensus 186 ~~~~~~w~~~~~~~ 199 (249)
+..+|...+.+.
T Consensus 351 --~~~~~~~~~~~~ 362 (375)
T 2gfp_A 351 --QTGQGSLGLLMT 362 (375)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --cCCcccHHHHHH
Confidence 334676666654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.07 E-value=6.2e-11 Score=101.68 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=101.5
Q ss_pred chhhHHHHhHHHHHHHHHHHHhhh----hhcch----hHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHH
Q psy6455 64 DKGWLNAAPMLGMVFGSYFWGCLA----DTQGR----KITLIGALLVDGLCGIASSVA---------QYYGVFLALRFIN 126 (249)
Q Consensus 64 ~~~~~~~~~~i~~~i~~~~~g~l~----dr~Gr----r~~~~~~~~~~~i~~~~~~~~---------~~~~~l~~~~~l~ 126 (249)
..+++.....++..++.++.+++. ||.|+ ++.+.++.++.+++.++..+. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456677777777778888887765 55543 356677777777777766653 2566777888999
Q ss_pred HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchh---------HHHHH
Q psy6455 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSW---------NLFVT 197 (249)
Q Consensus 127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w---------~~~~~ 197 (249)
|++.+...+...+++.|..|++.|++++++.+....+|..++|.+.+.+.+.. ..+| +..|+
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~---------~~~~~~~~~~~~~~~~~~ 486 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT---------VTEQIVQTGMSVTAFQMF 486 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH---------HHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc---------cccccccccccccccHHH
Confidence 99999999999999999999999999999999999999999999999886321 0123 33366
Q ss_pred HHHHHHHHHHHHhhcc
Q psy6455 198 LVSVPSILLALWLTRF 213 (249)
Q Consensus 198 ~~~~~~~~~~~~~~~~ 213 (249)
+.+++.++..++.+++
T Consensus 487 ~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 487 FFAGFAILAAIVFALY 502 (524)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666554443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=72.59 E-value=1.7 Score=19.21 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=11.5
Q ss_pred HHHhhhhhcchhHH
Q psy6455 82 FWGCLADTQGRKIT 95 (249)
Q Consensus 82 ~~g~l~dr~Grr~~ 95 (249)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=48.26 E-value=62 Score=23.54 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHHhhhhhcchh
Q psy6455 69 NAAPMLGMVFGSYFWGCLADTQGRK 93 (249)
Q Consensus 69 ~~~~~i~~~i~~~~~g~l~dr~Grr 93 (249)
+..|.+|..+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 5667888899999999999987644
No 17
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=32.84 E-value=20 Score=29.80 Aligned_cols=9 Identities=0% Similarity=-0.112 Sum_probs=4.7
Q ss_pred hhHHHHHHH
Q psy6455 191 SWNLFVTLV 199 (249)
Q Consensus 191 ~w~~~~~~~ 199 (249)
+||...+..
T Consensus 397 ~~~~~il~~ 405 (442)
T 3qnq_A 397 KISGVILQL 405 (442)
T ss_dssp CTHHHHHHH
T ss_pred cHHHHHHHH
Confidence 377654433
Done!