RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6455
(249 letters)
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 160 bits (405), Expect = 6e-45
Identities = 87/237 (36%), Positives = 125/237 (52%), Gaps = 4/237 (1%)
Query: 7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
E+ +E + G+G+F + L GL + + V+ FVLPSA+ D + S KG
Sbjct: 146 EELAQQYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKG 205
Query: 67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
L LGM+ G++FWG LAD GRK L+ L V+G SS Q YG FL R ++
Sbjct: 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLS 265
Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP---LNLRIE 183
GF + G + I F Y EF R + L WL MFW G I A+AW +IP + ++
Sbjct: 266 GFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMG 325
Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
+ Y + SW +FV + + P + LT PESP+F E G++D+A IL+ + N
Sbjct: 326 SAY-QFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 97.0 bits (242), Expect = 4e-23
Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 19/199 (9%)
Query: 46 VLSFVLPSAQCDFGMTSSDKGWLNAAP----MLGMVFGSYFWGCLADTQGRKITLIGALL 101
+ ++ + D W +G++ GS+ +G L+D GRK L+ + L
Sbjct: 107 SYDTFSSTIVTEWDLVCEDA-WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTL 165
Query: 102 VDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFW 161
V + G+ ++ + Y VFL R + G + G EF P R V +++F+
Sbjct: 166 VTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFF 225
Query: 162 TGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLF 221
+ G+++LP VA+ IP W VS+P+ L L PESP++L
Sbjct: 226 SLGLVLLPLVAY-FIP-------------DWRWLQLAVSLPTFLFFLLSWFVPESPRWLI 271
Query: 222 ECGEYDQALDILRQMFSAN 240
G ++AL IL+++ N
Sbjct: 272 SQGRIEEALKILQRIAKIN 290
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 82.0 bits (203), Expect = 5e-18
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 10/196 (5%)
Query: 25 FHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWG 84
+ + +I L+ + + F P+ ++G+ G+L +A ++GM FG+ F+G
Sbjct: 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73
Query: 85 CLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEF 144
LAD GR+ L+ ++L+ + + ++A L LRF+ G + G + + E+
Sbjct: 74 PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133
Query: 145 QPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSI 204
P +R + + + G V +A LIP ++ +LF P +
Sbjct: 134 APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP----------VFGWRSLFYVGGIAPLL 183
Query: 205 LLALWLTRFPESPKFL 220
LL L + PES FL
Sbjct: 184 LLLLLMRFLPESIDFL 199
Score = 41.2 bits (97), Expect = 3e-04
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 1/142 (0%)
Query: 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI 94
LLY + + L+ LP + G + S A G V GS +G LAD G ++
Sbjct: 257 LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV 316
Query: 95 TLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVL 154
T + LL + S + L L I GF V G + + F PTA R +
Sbjct: 317 TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGV 376
Query: 155 CW-LEMFWTGGIIVLPAVAWLL 175
W + + G II +LL
Sbjct: 377 GWAIGIGRLGAIIGPILAGYLL 398
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 78.1 bits (193), Expect = 1e-16
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 18/218 (8%)
Query: 28 ILVIFGGLLYAY--------AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFG 79
++ GG L+ Y + F ++ ++ G + + +G + G
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 80 SYFWGCLADTQGRKITLI--GALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGIC 137
S F G L D GRK +L+ L V G + + + + + R I G V G +
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLV 122
Query: 138 FPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT 197
Y+ E P R + ++ T GI+V + L Y W + +
Sbjct: 123 PMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLN--------KYSNSDGWRIPLG 174
Query: 198 LVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQ 235
L VP+ILL + L PESP++L G+ ++A +L +
Sbjct: 175 LQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAK 212
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 68.5 bits (168), Expect = 2e-13
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 8/183 (4%)
Query: 30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT 89
++ L + + + +LS LP D G+++S G + +A LG GS G L+D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 90 QGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAY 149
GR+ L+ LL+ L + + A + L RF+ G + E+ P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 150 REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209
R + L + G ++ P + LL + L + ++ + LL L+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLA--------ESLGWRWLFLILAILGLLLALLLLF 172
Query: 210 LTR 212
L R
Sbjct: 173 LLR 175
Score = 41.1 bits (97), Expect = 3e-04
Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 3/175 (1%)
Query: 29 LVIFGGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLA 87
L++ L + + L LP + G+++++ G L + LG + G+ G L+
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 88 DTQGRK-ITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQP 146
D GR+ + L+ LL+ L + ++A + L + GF + E P
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295
Query: 147 TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV 201
R F + G + P +A LL+ + + ++ L L+ +
Sbjct: 296 PEARGTASGLFNTFGSLGGALGPLLAGLLLD-TGGYGGVFLILAALALLAALLLL 349
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 62.4 bits (152), Expect = 3e-11
Identities = 54/223 (24%), Positives = 85/223 (38%), Gaps = 23/223 (10%)
Query: 27 YILVIFGGLLYAYAAI----SITVLSFVLPSAQCDF--------GMTSSDKGWLNAAPML 74
Y V L+ A + V+ L +F +SS G + + ++
Sbjct: 23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLV 82
Query: 75 GMVFGSYFWGCLADTQGRKITL--IGALLVDGLCGI-ASSVAQYYGVFLALRFINGFAVT 131
G G+ F G L+D GRK +L I L V G + ++ A + + R + G V
Sbjct: 83 GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142
Query: 132 GTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS 191
+ YL E P A R + ++ T GI+V + LN + L
Sbjct: 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202
Query: 192 WNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILR 234
+P+ LL L L PESP++L G ++A L
Sbjct: 203 L--------IPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLA 237
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 57.8 bits (140), Expect = 1e-09
Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 22/233 (9%)
Query: 31 IFGGLLYAY--AAISITVLS---FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGC 85
GGLL+ Y A IS TV S + +S G+ A+ ++G + G G
Sbjct: 18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGY 77
Query: 86 LADTQGRKITLIGALLVDGLCGIASSVAQ------------YYGVFLALRFINGFAVTGT 133
++ GR+ +L A ++ + + S+ + Y F+ R I G V
Sbjct: 78 CSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA 137
Query: 134 LGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYS-SW 192
+ Y+ E P R K++ + + G +V+ V + + R +L + W
Sbjct: 138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI----ARSGDASWLNTDGW 193
Query: 193 NLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGKEI 245
++P++L + L PE+P++L G+ +QA ILR++ +
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 55.1 bits (133), Expect = 6e-09
Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 9/185 (4%)
Query: 35 LLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK 93
L A + ++L LP D G++ ++ G L A LG G L+D GR+
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR 62
Query: 94 ITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKV 153
L+ LL+ L + A + L LR + G + ++ P R +
Sbjct: 63 RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122
Query: 154 LCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF 213
L L + G + P + LL F + + L + ++++ + +LA L
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLA--------SLFGWRAAFLILAILALLAAVLAALLLPR 174
Query: 214 PESPK 218
P
Sbjct: 175 PPPES 179
Score = 37.0 bits (86), Expect = 0.007
Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 3/138 (2%)
Query: 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI 94
L + L LP Q G+++ G L L G G L+D GR+
Sbjct: 209 LALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRR 268
Query: 95 TL---IGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYRE 151
L + L++ L S+ + L + GF + + P R
Sbjct: 269 RLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERG 328
Query: 152 KVLCWLEMFWTGGIIVLP 169
+ G + P
Sbjct: 329 TASGLYNTAGSLGGALGP 346
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 49.5 bits (118), Expect = 6e-07
Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 9/185 (4%)
Query: 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI 94
L + A +++ VL +FG+T+ D L +A ++ FG+ +G D GR++
Sbjct: 19 LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL 78
Query: 95 TLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVL 154
++ ++++ +A A Y R + G + G G Y+ E P R K
Sbjct: 79 PMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKAS 138
Query: 155 CWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFP 214
L + G +V V L++P W + +P I P
Sbjct: 139 GLLISGYAVGAVVAAQVYSLVVP---------VWGDGWRALFFISILPIIFALWLRKNIP 189
Query: 215 ESPKF 219
E+ +
Sbjct: 190 EAEDW 194
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 47.6 bits (114), Expect = 2e-06
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS 110
LP DFG+++ +A +LG G F+G +AD+ GRK ++G LV L +A
Sbjct: 14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC 73
Query: 111 SVAQYYGVFLALRFINGFA 129
++AQ + +RF++G A
Sbjct: 74 ALAQTIDQLIYMRFLHGLA 92
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 47.4 bits (113), Expect = 2e-06
Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 12/190 (6%)
Query: 28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLA 87
+ G L + I + P D +S +LG G WG L+
Sbjct: 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLS 64
Query: 88 DTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPT 147
D GR+ L+ L + L + +++ L LRF+ F + I + + P
Sbjct: 65 DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPG 124
Query: 148 AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN-LFVTLVSVPSILL 206
++ L M + PAVA LL L ++ SW+ +F L +L
Sbjct: 125 EELSRIYSIL-MPVLA---LAPAVAPLLGGYIL-------VWLSWHAIFAFLSLAGILLS 173
Query: 207 ALWLTRFPES 216
AL PE+
Sbjct: 174 ALIFFILPET 183
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 46.2 bits (110), Expect = 6e-06
Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 19/204 (9%)
Query: 47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106
LSF P Q D G++++ G++ +A G V G + G L D G + TL +++ G+
Sbjct: 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF 72
Query: 107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLC-WLEMFWTGGI 165
+ A Y LR + G A + + P + R + + GGI
Sbjct: 73 TGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGI 132
Query: 166 IVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL----WLTRFPESPKFLF 221
I P V W+LI + SW + V I+ + ++ P+ K+L
Sbjct: 133 IGGPLVGWILI------------HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLT 180
Query: 222 ECGEY--DQALDILRQMFSANTGK 243
E +Y L +Q +T K
Sbjct: 181 EEEKYIVVGGLLAEQQGKGPSTPK 204
Score = 28.1 bits (63), Expect = 5.4
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK-ITLIGALLVDGLCGIASSVA 113
+ G++ + G++ + P + G G L+D R+ +L+ A + G+ S+
Sbjct: 245 ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLL 302
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 45.7 bits (109), Expect = 8e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY 116
+FG+ + GW +A +LG++ G+ G LAD GRK LI ++ + GL +A++ A +
Sbjct: 44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDF 103
Query: 117 GVFLALRFINGFAVTGTL 134
L R + G + G L
Sbjct: 104 PSLLVARLLTGVGLGGAL 121
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 43.1 bits (102), Expect = 7e-05
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL-CGIASSVAQY 115
D G++++ G L A P+L G L D G + T +LL+ + C A Q
Sbjct: 31 DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS 90
Query: 116 YGVFLALRFINGFAVTGTLGICFPYLGEFQP 146
Y V L LR G A G+ C P++ F P
Sbjct: 91 YSVLLLLRLFIGIA-GGSFASCMPWISFFFP 120
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 41.8 bits (99), Expect = 2e-04
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 46 VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL 105
V +LP D G++ G L A LG+ G+ L R+ L+G L + +
Sbjct: 31 VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90
Query: 106 CGIASSVAQYYGVFLALRFINGFA 129
+ S++A + V L R + G A
Sbjct: 91 SNLLSALAPSFAVLLLARALAGLA 114
Score = 28.0 bits (63), Expect = 5.2
Identities = 20/90 (22%), Positives = 36/90 (40%)
Query: 45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG 104
+ +++ P + G + S + A + G+ G LAD R+ + LL+
Sbjct: 229 ALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLAL 288
Query: 105 LCGIASSVAQYYGVFLALRFINGFAVTGTL 134
+ + LAL F+ GFA + L
Sbjct: 289 ALLALTFTGASPALALALLFLWGFAFSPAL 318
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 39.9 bits (93), Expect = 8e-04
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI 94
L Y + ++ +++ + D G+T + +L A +G FG +G LAD GRK
Sbjct: 25 LGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP 84
Query: 95 TLIGALLV----DGLCGIASSVAQYYGVFLAL-RFINGFAVTGTLGICFPYLGEFQPTAY 149
++ +++ GL G+AS V + L L RFI G + G Y E P
Sbjct: 85 LMMWSIVAYSVGTGLSGLASGV-----IMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139
Query: 150 REKVLCWL-EMFWTGGII 166
+ K +L F G II
Sbjct: 140 KSKASAFLVSGFGIGNII 157
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 39.2 bits (92), Expect = 0.001
Identities = 29/140 (20%), Positives = 44/140 (31%), Gaps = 3/140 (2%)
Query: 38 AYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITL 96
+ + + + P Q G S+ GW+ AA LG + G+ G L R +
Sbjct: 221 LFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM 280
Query: 97 IGALLVDGLC-GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLC 155
GA+ V GL + + +FL L F G L P +V
Sbjct: 281 TGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFG 340
Query: 156 WLEMF-WTGGIIVLPAVAWL 174
+ L L
Sbjct: 341 AQFSLSHAAWPLGLILAGPL 360
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 36.9 bits (86), Expect = 0.007
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 25 FHYILVIFGGLLYAYAAISITVLSF--VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYF 82
+ + IF + YAA +T +F +P+ D G++ + G L +A + +
Sbjct: 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFV 83
Query: 83 WGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129
G L+D + + L++ + I + +F L +NG+
Sbjct: 84 MGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWF 130
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 35.8 bits (83), Expect = 0.018
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106
++ VL Q +FG+T+ L +A + FG G + D GR++ ++ ++++ +
Sbjct: 39 ITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG 98
Query: 107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWL-EMFWTGGI 165
+A A Y R + G + G G Y+ E P R K +L F G +
Sbjct: 99 TLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAV 158
Query: 166 IVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPES 216
+ + ++ R F+ ++ I+ ALWL + PE+
Sbjct: 159 VAAQVYSLVVPVWGWR----------ALFFIGIL---PIIFALWLRKNLPEA 197
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 34.3 bits (79), Expect = 0.049
Identities = 14/83 (16%), Positives = 34/83 (40%)
Query: 47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106
+ +P + G++ +D G L ++ + + G ++D ++ L L++ +
Sbjct: 14 FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIV 73
Query: 107 GIASSVAQYYGVFLALRFINGFA 129
+ + V AL +NG
Sbjct: 74 NLFFGFSTSLWVMAALWALNGIF 96
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 34.1 bits (78), Expect = 0.049
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 80 SYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFP 139
S FWG LAD +GRKI L+ + L G+ + +AQ FL LR A+ G LG P
Sbjct: 71 SPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILR-----ALLGLLGGFVP 125
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 33.8 bits (78), Expect = 0.075
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 70 AAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC----GIASSVAQYYGVF-----L 120
AA L G+ +G D GRK TL+ LL+ G+ G+ S A G++ L
Sbjct: 42 AAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYAT-IGIWAPILLL 100
Query: 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180
R I GF++ G G YL E+ P R + ++ G ++L A+ LL+ +
Sbjct: 101 LARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVG-LLLAALTVLLL--SY 157
Query: 181 RIETPYFLYSSWNL-FVTLVSVPSILLALWLTR-FPESPKFLFECGEYDQALDILRQMFS 238
+ L W + F LVS +L+ L+L R E+P F ++ + + + +
Sbjct: 158 LLGDDALLEWGWRIPF--LVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLT 215
Query: 239 AN 240
+
Sbjct: 216 KH 217
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 32.3 bits (74), Expect = 0.19
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 73 MLGMVFGSYFWGCLADTQGRK-ITLIGAL---LVDGLCGIASSVAQYYGVFLALRFINGF 128
+ GM F G +AD GRK + + GA + LC +A + + FLA RF+ G
Sbjct: 48 LAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL----FLAGRFLQGI 103
Query: 129 AVTGTLGICFPYLGEFQPTAYREKVL 154
+ F L + R KVL
Sbjct: 104 GAGCCYVVAFAILRDTLDDRRRAKVL 129
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 31.1 bits (71), Expect = 0.23
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 66 GWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI 125
G L A LG + S G L D GRK L+ L + L +++ V + RF+
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL 175
GF L + + P R L + GI + P + L
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVAL----GLMSAGIALGPLLGPPL 106
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 31.0 bits (71), Expect = 0.52
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 75 GMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAV 130
G G WG L+D GRK L+ L + L + + L LRF+ V
Sbjct: 53 GFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGV 108
>gnl|CDD|237704 PRK14402, PRK14402, membrane protein; Provisional.
Length = 198
Score = 30.2 bits (68), Expect = 0.66
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 68 LNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFING 127
L P L + F G +A R + L G GL +A+ + Y FL R G
Sbjct: 49 LGKGPALVVAFFDVLKGGIAVLLARALGLDGMWA--GLVAVAAVLGHNYSPFLRFRGGKG 106
Query: 128 FAVT-GTLGICFPYLG 142
A + GTL P L
Sbjct: 107 VATSFGTLLFLDPVLA 122
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 30.3 bits (69), Expect = 1.1
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG 104
T+ S + + DFG++ KG L A P+L +G L D G + I ++L+
Sbjct: 31 TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLL 90
Query: 105 LCGIASSVAQY---YGVFLALRFINGFA 129
+ + + A L + + G A
Sbjct: 91 IPCLGLAFAVTYPSTWQLLVIGLLLGLA 118
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 30.1 bits (68), Expect = 1.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 197 TLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILR 234
L+S+PS L +L R P+SPK EC D I +
Sbjct: 15 ELISIPSGQL--YLVRSPQSPKGSSECIYNDATASIRK 50
>gnl|CDD|221763 pfam12769, DUF3814, Domain of unknown function (DUF3814). This is
a domain of unknown function. It is often found in
combination with pfam05222, pfam01262 and pfam02233 on
alanine dehydrogenase and pyridine nucleotide
transhydrogenase enzymes.
Length = 86
Score = 27.1 bits (61), Expect = 2.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 94 ITLIGALLVDGLCGIASSVAQYYGVFLALRFIN---GFAVT 131
I ++GALL G ++V + V LA IN GF VT
Sbjct: 39 IIIVGALLAAGSASTLATVLGFIAVLLA--AINVVGGFLVT 77
>gnl|CDD|115715 pfam07079, DUF1347, Protein of unknown function (DUF1347). This
family consists of several hypothetical bacterial
proteins of around 610 residues in length. Members of
this family are highly conserved and seem to be specific
to Chlamydia species. The function of this family is
unknown.
Length = 550
Score = 28.6 bits (64), Expect = 3.7
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 204 ILLALWLTRFPESPKF-------LFECGEYDQALDILRQMFSAN 240
L +LWLT+ SP L E EY +A + L N
Sbjct: 482 YLYSLWLTKVAPSPLAYRLLGLCLLENKEYLEAWEYL-HSLPLN 524
>gnl|CDD|217684 pfam03710, GlnE, Glutamate-ammonia ligase adenylyltransferase.
Conserved repeated domain found in GlnE proteins. These
proteins adenylate and deadenylate glutamine synthases:
ATP + {L-Glutamate:ammonia ligase (ADP-forming)} =
Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase
(ADP-forming)}. The family is related to the pfam01909
domain.
Length = 251
Score = 27.6 bits (62), Expect = 5.9
Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 11/54 (20%)
Query: 197 TLVSVPSILLALWLTRFPESPK-----------FLFECGEYDQALDILRQMFSA 239
L P +L L R PK L E +Q +D LRQ
Sbjct: 17 QLARYPILLDELLDPRLLPRPKDTAAYPEELREALARVPEEEQLMDRLRQFKRR 70
>gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.
Length = 474
Score = 28.0 bits (63), Expect = 5.9
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 89 TQGRKITLIGALLVDGLC-----GIASSVAQYY 116
TQG K+ L ALLVDGL GI VA Y
Sbjct: 71 TQGEKLDL--ALLVDGLQAEREQGITIDVAYRY 101
>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 27.6 bits (62), Expect = 6.0
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 43 SITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV 102
+IT + +L + D G++ S G L P+L + LA G + +L ALL+
Sbjct: 27 AITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLL 86
Query: 103 DGLCGIASSVAQYYGVFLALRFIN-GFAVTGTL 134
+ S+ +FL G AV L
Sbjct: 87 IAAGILIRSLGGLPLLFLGTLLAGAGIAVINVL 119
>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.
Length = 476
Score = 27.6 bits (62), Expect = 7.5
Identities = 20/79 (25%), Positives = 33/79 (41%)
Query: 51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS 110
LP + + +T SD G A + G +F G + D G + L++
Sbjct: 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCM 118
Query: 111 SVAQYYGVFLALRFINGFA 129
S+ F+A+RF GF+
Sbjct: 119 SLVSSATGFIAVRFFIGFS 137
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 27.2 bits (61), Expect = 7.8
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 136 ICF--PYLGEFQPTAYREKVLCWLEMFWTGGI 165
I F PYL PT E+ WL +GG
Sbjct: 94 ILFNPPYL----PTEEEEEWDDWLNYALSGGK 121
>gnl|CDD|216642 pfam01674, Lipase_2, Lipase (class 2). This family consists of
hypothetical C. elegans proteins and lipases. Lipases or
triacylglycerol acylhydrolases hydrolyse ester bonds in
triacylglycerol giving diacylglycerol, monoacylglycerol,
glycerol and free fatty acids. Lipase estA is a
extracellular lipase from B. subtilis 168.
Length = 218
Score = 26.9 bits (60), Expect = 8.2
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 91 GRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEF 144
RK ++G VD C + + F+++ N GIC G+
Sbjct: 89 ARKA-ILGGNCVDTNCDLGPPLTSLVDTFISVAGANY-------GICCCPSGDT 134
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.144 0.468
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,361,984
Number of extensions: 1313374
Number of successful extensions: 2094
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2053
Number of HSP's successfully gapped: 169
Length of query: 249
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 155
Effective length of database: 6,768,326
Effective search space: 1049090530
Effective search space used: 1049090530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.0 bits)