RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6455
         (249 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 60.1 bits (144), Expect = 4e-11
 Identities = 25/197 (12%), Positives = 59/197 (29%), Gaps = 5/197 (2%)

Query: 22  YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSY 81
           Y +  + + +     YA   +     +  +P    + G +  D G+  +   +   F  +
Sbjct: 19  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 77

Query: 82  FWGCLADTQGRKITLIGALLVDGL----CGIASSVAQYYGVFLALRFINGFAVTGTLGIC 137
             G ++D    ++ L   L++        G          V   L F+ G+        C
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 138 FPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT 197
              +  +     R  ++         G  + P +  L +          ++ +   + V 
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197

Query: 198 LVSVPSILLALWLTRFP 214
           L +   +         P
Sbjct: 198 LFAFAMMRDTPQSCGLP 214


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 24/191 (12%), Positives = 47/191 (24%)

Query: 29  LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD 88
             +FG   + Y  I      F          ++ SD G + AA  L  +     +G L+D
Sbjct: 9   FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68

Query: 89  TQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA 148
             G +  L+  +    +      +  +  +      +        LG CF          
Sbjct: 69  KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128

Query: 149 YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL 208
             +        F    +      A     + +                 L+    +  A 
Sbjct: 129 IEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK 188

Query: 209 WLTRFPESPKF 219
                  +   
Sbjct: 189 TDAPSSATVAN 199


>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of
          cytochrome bc1 complex (Ubiquinol-cytochrome c
          reductase), transmembrane region {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 69

 Score = 26.7 bits (59), Expect = 0.62
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9  FDATFENALAAAGYGKFHYILVIFGGLLYAYAAISI--TVLSFVLPSA 54
           D+T  +  ++     F Y++     +  AYAA ++    +S +  SA
Sbjct: 19 LDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASA 66


>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId:
           51453]}
          Length = 314

 Score = 25.6 bits (55), Expect = 6.6
 Identities = 6/32 (18%), Positives = 15/32 (46%)

Query: 174 LLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL 205
           +++P  +  + P   ++SWN +   +     L
Sbjct: 1   IVMPDGVTGKVPSLGWNSWNAYHCDIDESKFL 32


>g1n13.1 d.155.1.2 (A:,B:) Arginine decarboxylase {Archaeon
          Methanococcus jannaschii [TaxId: 2190]}
          Length = 159

 Score = 24.7 bits (54), Expect = 8.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 11 ATFENALAAAGYGKFHYILV 30
            F+ AL  AG G  + I +
Sbjct: 26 NAFDGALLNAGIGNVNLIRI 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.144    0.468 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 974,116
Number of extensions: 44532
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 12
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.0 bits)