BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6456
         (76 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RJ5|A Chain A, Structure Of Alcohol Dehydrogenase From Drosophila
           Lebanonesis T114v Mutant Complexed With Nad+
 pdb|3RJ5|B Chain B, Structure Of Alcohol Dehydrogenase From Drosophila
           Lebanonesis T114v Mutant Complexed With Nad+
 pdb|3RJ9|A Chain A, Structure Of Alcohol Dehydrogenase From Drosophila
           Lebanonesis T114v Mutant Complexed With Nad+
 pdb|3RJ9|B Chain B, Structure Of Alcohol Dehydrogenase From Drosophila
           Lebanonesis T114v Mutant Complexed With Nad+
 pdb|3RJ9|C Chain C, Structure Of Alcohol Dehydrogenase From Drosophila
           Lebanonesis T114v Mutant Complexed With Nad+
 pdb|3RJ9|D Chain D, Structure Of Alcohol Dehydrogenase From Drosophila
           Lebanonesis T114v Mutant Complexed With Nad+
 pdb|3RJ9|E Chain E, Structure Of Alcohol Dehydrogenase From Drosophila
           Lebanonesis T114v Mutant Complexed With Nad+
 pdb|3RJ9|F Chain F, Structure Of Alcohol Dehydrogenase From Drosophila
           Lebanonesis T114v Mutant Complexed With Nad+
          Length = 254

 Score = 30.4 bits (67), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)

Query: 6   ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQ 56
           A IT V  Y+++PG+  T L   F+S      WL    RV  L +  P Q ++
Sbjct: 169 APITGVTAYSINPGITRTPLVHTFNS------WLDVEPRVAELLLSHPTQTSE 215


>pdb|1A4U|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis
 pdb|1A4U|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis
 pdb|1B16|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
           Complex With Nad-3-pentanone
 pdb|1B16|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
           Complex With Nad-3-pentanone
 pdb|1B14|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
           Complex With Nad+
 pdb|1B14|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
           Complex With Nad+
 pdb|1B15|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
           Complex With Nad-Acetone
 pdb|1B15|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
           Complex With Nad-Acetone
 pdb|1B2L|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis:
           Ternary Complex With Nad-Cyclohexanone
 pdb|1SBY|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis
           Complexed With Nad+ And 2,2,2-Trifluoroethanol At 1.1 A
           Resolution
 pdb|1SBY|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis
           Complexed With Nad+ And 2,2,2-Trifluoroethanol At 1.1 A
           Resolution
          Length = 254

 Score = 30.4 bits (67), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)

Query: 6   ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQ 56
           A IT V  Y+++PG+  T L   F+S      WL    RV  L +  P Q ++
Sbjct: 169 APITGVTAYSINPGITRTPLVHTFNS------WLDVEPRVAELLLSHPTQTSE 215


>pdb|1MG5|A Chain A, Crystal Structure Of Drosophila Melanogaster Alcohol
           Dehydrogenase Complexed With Nadh And Acetate At 1.6 A
 pdb|1MG5|B Chain B, Crystal Structure Of Drosophila Melanogaster Alcohol
           Dehydrogenase Complexed With Nadh And Acetate At 1.6 A
          Length = 255

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 6   ANITNVNTYAVHPGVVDTELSRHFDS 31
           A IT V  Y V+PG+  T L   F+S
Sbjct: 170 APITGVTAYTVNPGITRTTLVHKFNS 195


>pdb|3V0A|C Chain C, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
           NTNHA
          Length = 152

 Score = 26.2 bits (56), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 31  SIIP-GTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 75
           SI P GTAW      G F  S    A+ TLY  +      +TG+YY
Sbjct: 59  SIEPSGTAWDGDSAKGRFTTS-RDDAKNTLYLQMSNLQPEDTGVYY 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,162,010
Number of Sequences: 62578
Number of extensions: 65110
Number of successful extensions: 169
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 6
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)