RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6456
(76 letters)
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 73.0 bits (180), Expect = 1e-17
Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 6/72 (8%)
Query: 9 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCE 68
+ + A HPG T L + L + GA+ TLY A
Sbjct: 188 SPLRALAAHPGYSHTNLQGASGRKL--GDALMSAATRVVATDADFGARQTLYAASQDLPG 245
Query: 69 RE----TGLYYA 76
Y
Sbjct: 246 DSFVGPRFGYLG 257
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 58.5 bits (142), Expect = 3e-12
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 18/69 (26%)
Query: 9 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCA-LDKKC 67
+ A PG V T+++ KSP +GA+T +Y A L
Sbjct: 218 DKILLNACCPGWVRTDMAGPK-----------------ATKSPEEGAETPVYLALLPPDA 260
Query: 68 ERETGLYYA 76
E G + +
Sbjct: 261 EGPHGQFVS 269
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 52.6 bits (126), Expect = 4e-10
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 18/75 (24%)
Query: 1 MFQMSANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLY 60
++ I V PG+V TE++ + +GA+ +
Sbjct: 247 TRVLANKIPKFQVNCVCPGLVKTEMNYGI-----------------GNYTAEEGAEHVVR 289
Query: 61 CALDKKCERETGLYY 75
AL + +G +Y
Sbjct: 290 IALFPD-DGPSGFFY 303
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 30.3 bits (69), Expect = 0.033
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 9 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLY 60
T V Y+++PG+ T L F+S + + + + ++ Q Q +
Sbjct: 172 TGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVK 223
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 29.8 bits (68), Expect = 0.040
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 9 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWL 39
+ AV+PG + TE + ++++
Sbjct: 164 KPMKIIAVYPGGMATEFWETSGKSLDTSSFM 194
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 29.8 bits (68), Expect = 0.047
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPG 35
S+ I N + P VDT + + ++ G
Sbjct: 195 SSGIR-SN--TLLPAFVDTPMQQTAMAMFDG 222
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 29.5 bits (67), Expect = 0.050
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 11 VNTYAVHPGVVDTELSRH---FDSIIPGTAWLYQRVGGLFIKSPLQGAQT 57
+N V P V++ + F+ +P A +V F KS + GAQT
Sbjct: 152 IN--TVSPNVLEESWDKLEPFFEGFLPVPA---AKVARAFEKS-VFGAQT 195
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 29.8 bits (68), Expect = 0.052
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 9 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWL 39
+ + PG V+T++++ + +
Sbjct: 179 LGIRVTTLCPGWVNTDMAKKAGTPFKDEEMI 209
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 29.5 bits (67), Expect = 0.054
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 5 SANITNVNTYAVHPGVVDTELSRH 28
+ AV PG+VDT++ +
Sbjct: 168 ERQVK-AI--AVAPGIVDTDMQVN 188
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 29.8 bits (68), Expect = 0.056
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTA 37
I VN A+ PGVVD E D++
Sbjct: 175 KHRIN-VN--AIAPGVVDGEHWDGVDALFARYE 204
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 29.4 bits (67), Expect = 0.059
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV 43
I VN AV PG + TE ++ P +
Sbjct: 169 PLRIR-VN--AVAPGAIATEAVLEAIALSPDPERTRRDW 204
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 29.4 bits (67), Expect = 0.070
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 11 VNTYAVHPGVVDTELSRHFDSIIPGTA 37
VN + PG + T L +++P
Sbjct: 179 VN--CISPGNIWTPLWEELAALMPDPR 203
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 29.4 bits (67), Expect = 0.072
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 7 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV 43
I VN AV PG +D+ + A L
Sbjct: 195 GIR-VN--AVAPGTIDSPYFTKIFAEAKDPAKLRSDF 228
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 29.1 bits (66), Expect = 0.085
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 7 NITNVNTYAVHPGVVDTELSRHFDSIIPGT 36
I N AV PG + T + + G
Sbjct: 174 KIR-CN--AVCPGTIMTPMVIKAAKMEVGE 200
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 28.7 bits (65), Expect = 0.11
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTA 37
I VN V PG VDT+L R+
Sbjct: 160 KYQIR-VN--TVCPGTVDTDLYRNLIQKYANNV 189
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 28.7 bits (65), Expect = 0.12
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPL 52
I VN ++ PG+V T + Y + + P
Sbjct: 182 QHGIR-VN--SISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPA 226
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 28.6 bits (65), Expect = 0.12
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHF 29
+ I N AV PG+++T +++
Sbjct: 175 GSGIR-CN--AVCPGMIETPMTQWR 196
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 28.7 bits (65), Expect = 0.13
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDS 31
+ +N V PG V+T L + +
Sbjct: 173 GRGVR-LN--VVAPGAVETPLLQASKA 196
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 28.6 bits (65), Expect = 0.14
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 11 VNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ----RVG 44
VN VHPG + T L + + +G
Sbjct: 182 VN--TVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIG 217
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 28.4 bits (64), Expect = 0.14
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 4 MSANITNVNTYAVHPGVVDTELSRHFDSIIPGTAW 38
+ A T + P +DT +R + S W
Sbjct: 179 LPAGST-SL--GILPVTLDTPTNRKYMSDANFDDW 210
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 28.6 bits (65), Expect = 0.14
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFD 30
+ I VN +VHPG+ T ++
Sbjct: 171 TDRIR-VN--SVHPGMTYTPMTAETG 193
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 28.4 bits (64), Expect = 0.15
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 9 TNVNTYAVHPGVVDTELSRH 28
NV+ G++DTE +
Sbjct: 200 VNVSITLCVLGLIDTETAMK 219
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 28.4 bits (64), Expect = 0.16
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 6 ANITNVNTYAVHPGVVDTELSRHFDS 31
IT V T + P V+T ++ +
Sbjct: 201 LQITGVKTTCLCPNFVNTGFIKNPST 226
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 28.3 bits (64), Expect = 0.16
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
+I VN +VHPG V+T +
Sbjct: 196 SIR-VN--SVHPGPVNTPM 211
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 28.4 bits (64), Expect = 0.17
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 9 TNVNTYAVHPGVVDTELSRH-FDSIIPGTAWLYQRVGGLFIKSPLQG---AQTTLYCA 62
T++ + PGVV+T+ + D A Y+++ L+ A+ +Y
Sbjct: 210 THIRATCISPGVVETQFAFKLHDKDPEKAAATYEQM------KCLKPEDVAEAVIYVL 261
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 28.3 bits (64), Expect = 0.18
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 7 NITNVNTYAVHPGVVDTELSRHFD 30
T VN A PG+V T + D
Sbjct: 176 GHT-VN--AYAPGIVGTGMWEQID 196
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 28.4 bits (64), Expect = 0.19
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
+I N +HP V+T++
Sbjct: 200 SIR-AN--VIHPTNVNTDM 215
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 28.3 bits (64), Expect = 0.19
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDS 31
++ + +N A+ PG V+T + +
Sbjct: 175 NSGVR-LN--AICPGFVNTAILESIEK 198
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 28.3 bits (64), Expect = 0.19
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 9 TNVNTYAVHPGVVDTELSRH 28
TN+ V+PGVV++EL+
Sbjct: 172 TNIRVTCVNPGVVESELAGT 191
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 28.3 bits (64), Expect = 0.19
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 5 SANITNVNTYAVHPGVVDTELSRH 28
I VN ++HP V+T +
Sbjct: 198 EYGIR-VN--SIHPYSVETPMIEP 218
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 27.9 bits (63), Expect = 0.21
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHF 29
+I VN AV PG ++T +S +
Sbjct: 200 KHHIR-VN--AVCPGAIETNISDNT 221
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 27.9 bits (63), Expect = 0.21
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 5 SANITNVNTYAVHPGVVDTEL 25
I VN ++HP V+T +
Sbjct: 195 GQMIR-VN--SIHPSGVETPM 212
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 27.9 bits (63), Expect = 0.21
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 7 NITNVNTYAVHPGVVDTELSRHFDSIIPGT 36
+ N AV P +DT L R + G+
Sbjct: 167 LLR-CN--AVCPATIDTPLVRKAAELEVGS 193
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 28.0 bits (63), Expect = 0.22
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
IT VN V PG + T++
Sbjct: 200 KIT-VN--VVAPGGIKTDM 215
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 27.9 bits (63), Expect = 0.23
Identities = 6/23 (26%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 5 SANITNVNTYAVHPGVVDTELSR 27
++ + VN ++ PG++ T+L
Sbjct: 184 ASWVR-VN--SIRPGLIRTDLVA 203
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 27.7 bits (62), Expect = 0.25
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 9 TNVNTYAVHPGVVDTELSRH 28
+V + PG +D ++ +
Sbjct: 188 PSVRVLSYAPGPLDNDMQQL 207
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 27.9 bits (63), Expect = 0.25
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 9 TNVNTYAVHPGVVDTELSRH-FDSIIPGTA 37
NV V PG VDT + +
Sbjct: 171 ANVRVVNVLPGSVDTGFAGNTPGQAWKLKP 200
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 27.9 bits (63), Expect = 0.26
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
IT VN AV PG T++
Sbjct: 189 KIT-VN--AVAPGGTVTDM 204
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 27.5 bits (62), Expect = 0.26
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 9 TNVNTYAVHPGVVDTELSRHFDSIIPGTA 37
+ + ++P + +E + D + P
Sbjct: 169 SPLRLVNLYPSGIRSEFWDNTDHVDPSGF 197
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 27.5 bits (62), Expect = 0.27
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 3/33 (9%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTA 37
NI VN A+ PG + +
Sbjct: 177 PYNIR-VN--AISPGYMGPGFMWERQVELQAKV 206
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 27.6 bits (62), Expect = 0.27
Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
NI VN V P V T +
Sbjct: 213 NIR-VN--IVCPSSVATPM 228
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 27.8 bits (63), Expect = 0.28
Identities = 7/30 (23%), Positives = 8/30 (26%), Gaps = 3/30 (10%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIP 34
I AV PG V T +
Sbjct: 177 DQGIR-AV--AVLPGTVKTNIGLGSSKPSE 203
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 27.8 bits (62), Expect = 0.28
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 9 TNVNTYAVHPGVVDTELSRHFD 30
+ + PG+V + + D
Sbjct: 186 YEIGVSVLCPGLVKSYIYASDD 207
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 27.6 bits (62), Expect = 0.28
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 7 NITNVNTYAVHPGVVDTELSRH 28
I VN +VHP V T + +
Sbjct: 200 MIR-VN--SVHPTHVKTPMLHN 218
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 27.5 bits (62), Expect = 0.29
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 5 SANITNVNTYAVHPGVVDTELSR 27
+ N A+ PG+V T
Sbjct: 179 RHGVR-CN--AIAPGLVRTPRLE 198
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 27.5 bits (62), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
IT VN VHPG DT++
Sbjct: 202 GIT-VN--IVHPGSTDTDM 217
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 27.5 bits (62), Expect = 0.30
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 5 SANITNVNTYAVHPGVVDTELSRH 28
+ V+ V PG V TE
Sbjct: 199 QHQVR-VS--LVAPGSVRTEFGVG 219
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 27.7 bits (62), Expect = 0.30
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV 43
A + +N + PG +T L + + + V
Sbjct: 175 EAGVR-LN--TIAPGATETPLLQAGLQDPRYGESIAKFV 210
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 27.5 bits (62), Expect = 0.31
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 9 TNVNTYAVHPGVVDTELSRH 28
+V + + PG VDT
Sbjct: 170 PDVRFFELRPGAVDTYFGGS 189
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 27.5 bits (62), Expect = 0.33
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFD 30
IT VN PG+V T + D
Sbjct: 172 PLGIT-VN--GYCPGIVKTPMWAEID 194
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 27.5 bits (62), Expect = 0.35
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHF 29
I +N AV P V+T + R
Sbjct: 186 PQGIR-IN--AVCPNEVNTPMLRTG 207
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 27.5 bits (62), Expect = 0.36
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
+IT VN AV PG T+L
Sbjct: 197 DIT-VN--AVAPGPTATDL 212
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 27.5 bits (62), Expect = 0.37
Identities = 8/33 (24%), Positives = 9/33 (27%), Gaps = 3/33 (9%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTA 37
NI VN PG V T +
Sbjct: 179 PKNIR-VNCVC--PGFVKTAMQEREIIWEAELR 208
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 27.5 bits (62), Expect = 0.37
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 5 SANITNVNTYAVHPGVVDTELSR 27
NI VN + PG++ T S+
Sbjct: 184 PRNIR-VN--CLAPGLIKTNFSQ 203
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 27.1 bits (61), Expect = 0.38
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 11 VNTYAVHPGVVDTELSRHFDSIIPGTA 37
VN ++HPG+V T ++ I TA
Sbjct: 178 VN--SIHPGLVKTPMTDWVPEDIFQTA 202
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 27.1 bits (61), Expect = 0.39
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
IT VN A+ PG V T++
Sbjct: 183 GIT-VN--AILPGFVKTDM 198
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 27.2 bits (61), Expect = 0.40
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFD 30
N+ + V PG V T + D
Sbjct: 178 KCNVR-IT--DVQPGAVYTPMWGKVD 200
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 27.1 bits (61), Expect = 0.40
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 7 NITNVNTYAVHPGVVDTELSRHF 29
I V A++P +T L F
Sbjct: 182 KIR-VV--ALNPVAGETPLLTTF 201
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 27.2 bits (61), Expect = 0.41
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
+T VN + PG V T++
Sbjct: 192 GVT-VN--CIAPGGVKTDM 207
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 27.2 bits (61), Expect = 0.42
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPL 52
I VN +V PG+V+T + + Y + P+
Sbjct: 182 KFGIR-VN--SVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPI 226
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 27.2 bits (61), Expect = 0.45
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 9 TNVNTYAVHPGVVDTELSRH 28
T V + PG+ ++E S
Sbjct: 192 TGVRVTNLEPGLCESEFSLV 211
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 27.1 bits (61), Expect = 0.46
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 11 VNTYAVHPGVVDTELSRHF 29
VN ++HP + T + +
Sbjct: 178 VN--SIHPDGIYTPMMQAS 194
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 27.2 bits (61), Expect = 0.46
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIP 34
+I + G DT +++ + +P
Sbjct: 197 VHDIA-CG--QIDIGNADTPMAQKMKAGVP 223
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 27.2 bits (61), Expect = 0.46
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
NI VN +V+PG V+TE+
Sbjct: 230 NIR-VN--SVNPGAVNTEM 245
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 27.1 bits (61), Expect = 0.47
Identities = 3/23 (13%), Positives = 6/23 (26%), Gaps = 3/23 (13%)
Query: 5 SANITNVNTYAVHPGVVDTELSR 27
I + A+ P +
Sbjct: 167 RDGIL-LY--AIGPNFFNNPTYF 186
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 27.2 bits (61), Expect = 0.48
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 7 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKS-PLQ 53
++ VN V PG ++T+L + + + + P+
Sbjct: 176 HVR-VN--GVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIG 220
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 27.1 bits (61), Expect = 0.50
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 3/23 (13%)
Query: 7 NITNVNTYAVHPGVVDTELSRHF 29
I +N + PG +T
Sbjct: 195 GIR-IN--TLSPGPTETTGLVEL 214
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 26.8 bits (60), Expect = 0.51
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPL 52
+ VN +V PG V T + LY +G P+
Sbjct: 200 QHGVR-VN--SVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV 244
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 27.1 bits (61), Expect = 0.52
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 5 SANITNVNTYAVHPGVVDTEL 25
IT VN AV PG ++T +
Sbjct: 191 GYGIT-VN--AVAPGNIETPM 208
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 26.7 bits (60), Expect = 0.52
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 2/19 (10%)
Query: 11 VNTYAVHPGVVDTELSRHF 29
VN V P +V + L
Sbjct: 192 VN--CVSPYIVASPLLTDV 208
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 26.7 bits (60), Expect = 0.55
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTA 37
I VN +V PG + + + G
Sbjct: 180 EKGIR-VN--SVLPGYIWGGTLKSYFEHQAGKY 209
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 26.9 bits (60), Expect = 0.56
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 9 TNVNTYAVHPGVVDTELSRH-FDSIIPGTAWLYQRVGGLFIKSPLQG---AQTTLYCA 62
T + + PG+V+TE S + +Y+ +PL A +Y
Sbjct: 209 TKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDT------TPLMADDVADLIVYAT 260
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 26.7 bits (60), Expect = 0.58
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 7 NITNVNTYAVHPGVVDTELSR 27
I VN A+ PG DT +
Sbjct: 181 GIR-VN--ALLPGGTDTPANF 198
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 26.7 bits (60), Expect = 0.68
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV 43
I N +V P VV TE+ + +A + R+
Sbjct: 191 PHGIR-AN--SVCPTVVLTEMGQRVWGDEAKSAPMIARI 226
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 26.7 bits (60), Expect = 0.70
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHF 29
I +N A+ PG + T + +
Sbjct: 185 RYGIR-IN--AIAPGAIWTPMVENS 206
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 26.3 bits (59), Expect = 0.72
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
I+ VN A+ PG +DT
Sbjct: 183 QIS-VN--AIAPGPMDTSF 198
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 26.3 bits (59), Expect = 0.75
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 7 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV 43
NI VN +V PGV+ T L P
Sbjct: 193 NIR-VN--SVAPGVILTPLVETAIKKNPHQKEEIDNF 226
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 26.3 bits (59), Expect = 0.80
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 7 NITNVNTYAVHPGVVDTELSRHF 29
I N V PG VDT +
Sbjct: 169 GIR-CN--CVCPGTVDTPSLQER 188
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 26.4 bits (59), Expect = 0.83
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 9 TNVNTYAVHPGVVDTELSRH 28
+ V PG +T + +
Sbjct: 167 NGIRVSTVSPGPTNTPMLQG 186
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 26.4 bits (59), Expect = 0.83
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
I VN AV PG+++T+L
Sbjct: 203 GIR-VN--AVRPGIIETDL 218
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 26.2 bits (58), Expect = 0.92
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 9 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTT 58
+ + P VV+T+L + + I + G F P Q +
Sbjct: 202 NGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVS 251
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 26.1 bits (58), Expect = 0.98
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 7 NITNVNTYAVHPGVVDTELSR 27
AV P +DT ++R
Sbjct: 171 GAA-AI--AVLPVTLDTPMNR 188
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 25.9 bits (58), Expect = 1.0
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHF 29
I VN AV G +DT+ +HF
Sbjct: 174 PKQII-VN--AVSGGAIDTDALKHF 195
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 25.9 bits (58), Expect = 1.1
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDS 31
NI VN + PG + T+ + +
Sbjct: 179 EKNIR-VN--GIAPGAILTDALKSVIT 202
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 26.0 bits (58), Expect = 1.1
Identities = 7/26 (26%), Positives = 8/26 (30%), Gaps = 3/26 (11%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFD 30
+ N V PG VDT
Sbjct: 184 KDGVR-FN--IVSPGTVDTAFHADKT 206
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 26.0 bits (58), Expect = 1.1
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 7 NITNVNTYAVHPGVVDTEL 25
I VN +V PG +DT
Sbjct: 174 GIR-VN--SVSPGFIDTPT 189
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 25.9 bits (58), Expect = 1.2
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 7 NITNVNTYAVHPGVVDTELSRHF 29
I VN AV+P VV T + +
Sbjct: 171 KI-RVN--AVNPTVVMTSMGQAT 190
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 25.7 bits (57), Expect = 1.2
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 7 NITNVNTYAVHPGVVDTELSR 27
N V + P +DT ++R
Sbjct: 167 NSA-VL--TIMPVTLDTPMNR 184
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 25.9 bits (58), Expect = 1.3
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 7 NITNVNTYAVHPGVVDTELSRHF 29
I VN +V+P VV T++ +
Sbjct: 171 KI-RVN--SVNPTVVLTDMGKKV 190
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 25.6 bits (57), Expect = 1.3
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 9 TNVNTYAVHPGVVDTELSRH--FDSIIPGTAWLYQRVGGLFIKSPLQG---AQTTLYCA 62
+NV + P V TEL H I G +GG L A+ L+
Sbjct: 180 SNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGG-----VLAADDVARAVLFAY 233
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 25.7 bits (57), Expect = 1.3
Identities = 3/25 (12%), Positives = 8/25 (32%), Gaps = 3/25 (12%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHF 29
+I + G T+++
Sbjct: 206 MHDIA-CG--QIDIGNAATDMTARM 227
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 25.6 bits (57), Expect = 1.6
Identities = 5/20 (25%), Positives = 9/20 (45%), Gaps = 3/20 (15%)
Query: 5 SANITNVNTYAVHPGVVDTE 24
I V V PG++ ++
Sbjct: 204 ETGIA-VF--EVRPGIIRSD 220
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 25.6 bits (57), Expect = 1.6
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 9 TNVNTYAVHPGVVDTELSRH 28
V+ V V T L
Sbjct: 155 EGVHLVLVRLPAVATGLWAP 174
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 25.6 bits (57), Expect = 1.7
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 7 NITNVNTYAVHPGVVDTELSR 27
I N AV P ++T L+R
Sbjct: 187 GIR-AN--AVAPTYIETTLTR 204
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 25.2 bits (56), Expect = 1.9
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 6 ANITNVNTYAVHPGVVDTEL 25
I VN AV PG++ T
Sbjct: 178 PKIR-VN--AVCPGMISTTF 194
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 25.2 bits (56), Expect = 2.0
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 5 SANITNVNTYAVHPGVVDTELSR 27
+ VN + G+V++ R
Sbjct: 179 PKGVR-VN--GILIGLVESGQWR 198
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 25.4 bits (56), Expect = 2.0
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 9 TNVNTYAVHPGVVDTELSRH 28
+ ++HPG V T++
Sbjct: 210 QRIMCVSLHPGWVKTDMGGS 229
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 25.2 bits (56), Expect = 2.1
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 5 SANITNVNTYAVHPGVVDTELSR 27
NI +N A+ PG +DTE +R
Sbjct: 178 GRNIR-IN--AIAPGPIDTEANR 197
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 25.2 bits (56), Expect = 2.2
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 3/20 (15%)
Query: 5 SANITNVNTYAVHPGVVDTE 24
I VN + PG ++T
Sbjct: 178 PKGIR-VN--NIGPGAINTP 194
>2g9l_A Gaegurin-4, GGN4; amphipathic helix, antibiotic; NMR {Synthetic}
Length = 37
Score = 23.9 bits (51), Expect = 2.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 43 VGGLFIKSPLQGAQTTLYCALDKKC 67
VG +K QG +T+ C L K C
Sbjct: 13 VGKDLVKGAAQGVLSTVSCKLAKTC 37
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 25.2 bits (56), Expect = 2.4
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 5 SANITNVNTYAVHPGVVDTELSR 27
I VN A+ PG + T+
Sbjct: 180 PMGIR-VN--AIAPGAIKTDALA 199
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 25.2 bits (56), Expect = 2.5
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 7 NITNVNTYAVHPGVVDTEL-SRHFDSIIPGT 36
+ VN ++PG T + + F + P
Sbjct: 186 RLR-VN--CINPGGTRTAMRASAFPTEDPQK 213
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 25.1 bits (56), Expect = 2.5
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 5 SANITNVNTYAVHPGVVDTELSR 27
IT VN A+ P +V T +
Sbjct: 174 KDGIT-VN--AIAPSLVRTATTE 193
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 24.8 bits (55), Expect = 2.6
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 5 SANITNVNTYAVHPGVVDTEL 25
+ + VN AV PGV+ T +
Sbjct: 190 RSGVR-VN--AVSPGVIKTPM 207
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 24.8 bits (55), Expect = 2.8
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 9 TNVNTYAVHPGVVDTELSRH 28
V + PG DTEL H
Sbjct: 176 RGVRVVVIEPGTTDTELRGH 195
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 24.8 bits (55), Expect = 3.0
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHF 29
S I N AV P V+ T L+
Sbjct: 184 SDGIR-AN--AVAPAVIATPLAEAV 205
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 24.9 bits (55), Expect = 3.1
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 5 SANITNVNTYAVHPGVVDTEL 25
+ +T VN ++ PG V T L
Sbjct: 196 ESGVT-VN--SICPGYVLTPL 213
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 24.6 bits (54), Expect = 3.4
Identities = 7/20 (35%), Positives = 7/20 (35%)
Query: 9 TNVNTYAVHPGVVDTELSRH 28
NV PG V T L
Sbjct: 193 DNVLVVNFCPGWVQTNLGGK 212
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A
{Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A
2dso_A
Length = 333
Score = 24.7 bits (54), Expect = 3.7
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 25 LSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYC 61
+S I WL GL ++ Q L+
Sbjct: 24 ISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFL 60
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 24.4 bits (54), Expect = 3.7
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFDS 31
+ +N AV P + + S
Sbjct: 194 EFGVR-IN--AVSPSIARHKFLEKTSS 217
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 24.4 bits (54), Expect = 3.7
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 7 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL 39
NI VN V PGV+ T L L
Sbjct: 181 NIR-VN--GVGPGVIATSLVEMTIQDPEQKENL 210
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 24.2 bits (53), Expect = 4.4
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 2/24 (8%)
Query: 5 SANITNVNTYAVHPGVVDTELSRH 28
NI + + VDT R
Sbjct: 175 PKNIHVAH--LIIDSGVDTAWVRE 196
>4dkp_A Clade A/E 93TH057 HIV-1 GP120 core; CD4 mimic, AWS-I-50, viral
protein-I complex; HET: NAG EPE 0LL; 1.80A {Human
immunodeficiency virus type 1} PDB: 4dko_A* 4dkq_A*
4dkr_A* 3se8_G* 3ngb_G* 3se9_G* 3tgt_A* 3u7y_G* 3rjq_A*
3tgs_A* 3tgr_A* 3tih_A 3tgq_A* 3jwo_A* 2qad_A* 3hi1_G*
3dnl_B 3dnn_B 3dno_B 3dnl_C ...
Length = 353
Score = 24.4 bits (54), Expect = 4.6
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 55 AQTTLYCALDKKC-ERE 70
A TTL+CA D K E E
Sbjct: 5 ADTTLFCASDAKAHETE 21
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 24.0 bits (53), Expect = 5.2
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 7 NITNVNTYAVHPGVVDTELSRHFD 30
NI VN ++PG++ T
Sbjct: 179 NIR-VN--CINPGLILTPDWIKTA 199
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 24.1 bits (53), Expect = 5.3
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 3/20 (15%)
Query: 5 SANITNVNTYAVHPGVVDTE 24
+I VN AV PG+
Sbjct: 202 PRHIR-VN--AVAPGLSLLP 218
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 24.0 bits (53), Expect = 5.8
Identities = 5/20 (25%), Positives = 9/20 (45%), Gaps = 3/20 (15%)
Query: 5 SANITNVNTYAVHPGVVDTE 24
+ VN + PG++ T
Sbjct: 169 RKGVR-VN--VLLPGLIQTP 185
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 24.1 bits (53), Expect = 6.2
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 5 SANITNVNTYAVHPGVVDTEL 25
++N+T N A+ PG V T L
Sbjct: 171 TSNVT-CN--AICPGWVLTPL 188
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 23.7 bits (52), Expect = 6.4
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 5 SANITNVNTYAVHPGVVDTELSR 27
+ + N V PG DT++ R
Sbjct: 166 GSGVR-CN--VVSPGSTDTDMQR 185
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 23.6 bits (52), Expect = 7.8
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 7 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV 43
+ VN A+ PG V TE++
Sbjct: 181 GVR-VN--ALAPGYVATEMTLKMRERPELFETWLDMT 214
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 23.7 bits (52), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 5 SANITNVNTYAVHPGVVDTELSRHFD 30
SA I VN A+ PG V+T+ + H D
Sbjct: 192 SAGIR-VN--ALSPGYVNTDQTAHMD 214
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 23.6 bits (52), Expect = 8.5
Identities = 4/26 (15%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 2 FQMSANITNVNTYAVHPGVVDTELSR 27
+ + N +++PG T +
Sbjct: 185 LEGVTAVR-AN--SINPGATRTGMRA 207
>3jwd_A HIV-1 GP120 envelope glycoprotein; HIV-1 viral spike, molecular
motion, protein architecture, R triggered entry, type 1
fusion protein, cell membrane, DISU bond; HET: YCM NAG;
2.61A {Human immunodeficiency virus 1} PDB: 1meq_A
Length = 379
Score = 23.3 bits (51), Expect = 9.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 55 AQTTLYCALDKK 66
A TTL+CA D K
Sbjct: 18 ATTTLFCASDAK 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.420
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,102,603
Number of extensions: 48171
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 122
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)