BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6459
         (66 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q21049|LIPA_CAEEL Liprin-alpha OS=Caenorhabditis elegans GN=syd-2 PE=2 SV=1
          Length = 1139

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TV+KRQAQN +GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 126 LLLEHLECLVSRHERSLRMTVMKRQAQNHAGVSSEVEVLKALKSLFEHHKALDEK 180


>sp|Q8BSS9|LIPA2_MOUSE Liprin-alpha-2 OS=Mus musculus GN=Ppfia2 PE=1 SV=2
          Length = 1257

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190


>sp|O75334|LIPA2_HUMAN Liprin-alpha-2 OS=Homo sapiens GN=PPFIA2 PE=1 SV=2
          Length = 1257

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190


>sp|P60469|LIPA3_MOUSE Liprin-alpha-3 OS=Mus musculus GN=Ppfia3 PE=1 SV=1
          Length = 1043

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 50/55 (90%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+  GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 115 LLLEHLECLVSRHERSLRMTVVKRQAQSPGGVSSEVEVLKALKSLFEHHKALDEK 169


>sp|Q91Z79|LIPA3_RAT Liprin-alpha-3 OS=Rattus norvegicus GN=Ppfia3 PE=1 SV=2
          Length = 1192

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 50/55 (90%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+  GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 115 LLLEHLECLVSRHERSLRMTVVKRQAQSPGGVSSEVEVLKALKSLFEHHKALDEK 169


>sp|O75145|LIPA3_HUMAN Liprin-alpha-3 OS=Homo sapiens GN=PPFIA3 PE=1 SV=3
          Length = 1194

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 50/55 (90%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+  GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 115 LLLEHLECLVSRHERSLRMTVVKRQAQSPGGVSSEVEVLKALKSLFEHHKALDEK 169


>sp|Q13136|LIPA1_HUMAN Liprin-alpha-1 OS=Homo sapiens GN=PPFIA1 PE=1 SV=1
          Length = 1202

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ +GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 123 LLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALKSLFEHHKALDEK 177


>sp|Q91Z80|LIPA4_RAT Liprin-alpha-4 (Fragment) OS=Rattus norvegicus GN=Ppfia4 PE=1
          SV=1
          Length = 1043

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 23/24 (95%)

Query: 34 VSSEAEVLKALKSLFEHHKALDEK 57
          VSSE EVLKALKSLFEHHKALDEK
Sbjct: 2  VSSEVEVLKALKSLFEHHKALDEK 25


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.126    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,265,027
Number of Sequences: 539616
Number of extensions: 419056
Number of successful extensions: 1461
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 8
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)