Query psy6459
Match_columns 66
No_of_seqs 15 out of 17
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 18:25:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w83_C C-JUN-amino-terminal ki 43.2 14 0.00047 23.1 2.0 27 29-55 2-29 (77)
2 3phh_A Shikimate dehydrogenase 33.4 10 0.00035 26.3 0.3 20 33-52 247-267 (269)
3 3phf_B Envelope glycoprotein L 31.3 57 0.0019 21.3 3.6 31 18-50 64-94 (108)
4 1zhc_A Hypothetical protein HP 31.1 33 0.0011 20.0 2.3 17 44-60 19-35 (76)
5 3i3n_A Kelch-like protein 11; 30.9 39 0.0013 21.9 2.8 22 32-53 197-218 (279)
6 4dwe_A Uncharacterized protein 28.1 25 0.00087 28.0 1.8 19 1-19 432-450 (480)
7 2d1l_A Metastasis suppressor p 21.2 2.2E+02 0.0075 20.0 7.0 55 4-60 32-98 (253)
8 1m1e_B ICAT; cell adhesion, cy 20.7 38 0.0013 21.1 1.2 13 37-49 19-31 (81)
9 2kmf_A Photosystem II 11 kDa p 20.3 1.2E+02 0.0042 19.4 3.6 36 30-65 63-103 (115)
10 2da4_A Hypothetical protein DK 20.0 50 0.0017 18.2 1.5 26 39-64 18-47 (80)
No 1
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.19 E-value=14 Score=23.12 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=19.6
Q ss_pred hccCCchHHHHH-HHHHHHHHHHhhHHh
Q psy6459 29 QNQSGVSSEAEV-LKALKSLFEHHKALD 55 (66)
Q Consensus 29 ~s~~gvssEvEV-LkALksLFeHHKaLD 55 (66)
.+|+||+.|||- ++-=..|.+-+-|||
T Consensus 2 ~~~~gmgkevEnLi~EN~eLl~TKNaLn 29 (77)
T 2w83_C 2 MDPEFMGREVENLILENTQLLETKNALN 29 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999985 455566777777775
No 2
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=33.44 E-value=10 Score=26.28 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=12.0
Q ss_pred CchHHHH-HHHHHHHHHHHhh
Q psy6459 33 GVSSEAE-VLKALKSLFEHHK 52 (66)
Q Consensus 33 gvssEvE-VLkALksLFeHHK 52 (66)
|..-.++ |+++|+|.|.||.
T Consensus 247 g~~~~~~~~~~~~~~~~~~~~ 267 (269)
T 3phh_A 247 ASQIPYSKAFEVMRSVFHHHH 267 (269)
T ss_dssp TTSSCHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHHhhhcc
Confidence 4444455 9999999999984
No 3
>3phf_B Envelope glycoprotein L; virus entry, membrane fusion, viral protein; 3.58A {Human herpesvirus 4}
Probab=31.31 E-value=57 Score=21.31 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=21.5
Q ss_pred hhHHHHHHHhhhccCCchHHHHHHHHHHHHHHH
Q psy6459 18 SLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEH 50 (66)
Q Consensus 18 Slr~Tv~krqa~s~~gvssEvEVLkALksLFeH 50 (66)
|.=..|++|-.-++ .+.|+|.|.+|++||.-
T Consensus 64 SFllaVl~r~~~~~--~~~l~elLn~l~~ly~~ 94 (108)
T 3phf_B 64 SFFISILKRSSSAL--TGHLRELLTTLETLYGS 94 (108)
T ss_dssp HHHHHHHHTTGGGC--CTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHh
Confidence 33445666655444 45579999999999863
No 4
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=31.15 E-value=33 Score=19.99 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.7
Q ss_pred HHHHHHHhhHHhHhhhh
Q psy6459 44 LKSLFEHHKALDEKGKG 60 (66)
Q Consensus 44 LksLFeHHKaLDEKv~~ 60 (66)
+..||+-|.+||.+++.
T Consensus 19 f~~L~~eH~~LD~~I~~ 35 (76)
T 1zhc_A 19 FDKIFEKHNQLDDDIKT 35 (76)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999999998864
No 5
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=30.94 E-value=39 Score=21.86 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=18.7
Q ss_pred CCchHHHHHHHHHHHHHHHhhH
Q psy6459 32 SGVSSEAEVLKALKSLFEHHKA 53 (66)
Q Consensus 32 ~gvssEvEVLkALksLFeHHKa 53 (66)
-.|.||.+|+.|+..--+|+..
T Consensus 197 L~v~sE~~vf~av~~W~~~~~~ 218 (279)
T 3i3n_A 197 ITVDSEEVLFETVLKWVQRNAE 218 (279)
T ss_dssp CCCSCHHHHHHHHHHHHHTTHH
T ss_pred CCCCCHHHHHHHHHHHHHcCHH
Confidence 4688999999999999988754
No 6
>4dwe_A Uncharacterized protein; hypothetical protein, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.01A {Bacteroides ovatus}
Probab=28.06 E-value=25 Score=28.01 Aligned_cols=19 Identities=37% Similarity=0.364 Sum_probs=16.7
Q ss_pred ChhhHHHHHHHHhhhhhhh
Q psy6459 1 MVLLLEHLEALVSRHERSL 19 (66)
Q Consensus 1 mrllLehlE~Lvsrhe~Sl 19 (66)
++.|+||.|..|.|||.+-
T Consensus 432 r~~L~Ehae~fV~~yEa~~ 450 (480)
T 4dwe_A 432 RKYLAEHAENFVKRYEANP 450 (480)
T ss_dssp CTTHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 4789999999999999754
No 7
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=21.22 E-value=2.2e+02 Score=19.97 Aligned_cols=55 Identities=25% Similarity=0.356 Sum_probs=41.3
Q ss_pred hHHHHHHHHhhhhhhhHHHHH------------HHhhhccCCchHHHHHHHHHHHHHHHhhHHhHhhhh
Q psy6459 4 LLEHLEALVSRHERSLRSTVV------------KRQAQNQSGVSSEAEVLKALKSLFEHHKALDEKGKG 60 (66)
Q Consensus 4 lLehlE~Lvsrhe~Slr~Tv~------------krqa~s~~gvssEvEVLkALksLFeHHKaLDEKv~~ 60 (66)
.+|+|=.+.++|+..|+.++. -..|.+..|.|. |+--+|..+=+-||.+..+.++
T Consensus 32 ~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~--elG~~L~~i~~~hr~ie~~l~~ 98 (253)
T 2d1l_A 32 VWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTR--EIGSALTRMCMRHRSIEAKLRQ 98 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 478888899999999998763 234444446666 5667888899999999887764
No 8
>1m1e_B ICAT; cell adhesion, cytoskeleton, armadillo repeats, transciption factor, structural protein; 2.10A {Homo sapiens} SCOP: a.161.1.1 PDB: 1luj_B 1t08_B
Probab=20.68 E-value=38 Score=21.10 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q psy6459 37 EAEVLKALKSLFE 49 (66)
Q Consensus 37 EvEVLkALksLFe 49 (66)
=||||-|||.|=|
T Consensus 19 kvEILtALkKLGe 31 (81)
T 1m1e_B 19 KVRVLLMLRKMGS 31 (81)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcc
Confidence 3799999997644
No 9
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=20.33 E-value=1.2e+02 Score=19.35 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=30.2
Q ss_pred ccCCchHHHHHHHHHHHHHHHhh-----HHhHhhhhhhhhc
Q psy6459 30 NQSGVSSEAEVLKALKSLFEHHK-----ALDEKGKGTAFQK 65 (66)
Q Consensus 30 s~~gvssEvEVLkALksLFeHHK-----aLDEKv~~~l~~~ 65 (66)
+-+|.+|=..+=.||.+|=.|-. -|.||+++++.|.
T Consensus 63 ~v~g~~Sf~tm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~e 103 (115)
T 2kmf_A 63 DAGGLKSFTTMQTALNSLAGYYTSYGARPIPEKLKKRLQLE 103 (115)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Confidence 44699998888899999999987 5889999998763
No 10
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.02 E-value=50 Score=18.21 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHh----hHHhHhhhhhhhh
Q psy6459 39 EVLKALKSLFEHH----KALDEKGKGTAFQ 64 (66)
Q Consensus 39 EVLkALksLFeHH----KaLDEKv~~~l~~ 64 (66)
+-+..|...|+.+ .-.|...++.|-+
T Consensus 18 ~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~ 47 (80)
T 2da4_A 18 RDLATLKKYWDNGMTSLGSVCREKIEAVAT 47 (80)
T ss_dssp HHHHHHHHHHTTTTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 4567788889988 8888877776643
Done!