RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6459
(66 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 1.2
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 28/71 (39%)
Query: 1 MV----LLLEHLEALVSRHERSL--------------RSTVVKRQAQNQSGVSSEAEVLK 42
M+ L E ++ V++ L ++ VV SG + L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-------SG---PPQSLY 387
Query: 43 ALKSLFEHHKA 53
L KA
Sbjct: 388 GLNLTLRKAKA 398
Score = 24.6 bits (53), Expect = 2.8
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 4 LLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLF 48
H + LV+ + + A+ S S V KA+ LF
Sbjct: 270 ATGHSQGLVT-------AVAI---AETDSWESFFVSVRKAITVLF 304
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 25.5 bits (57), Expect = 1.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 36 SEAEVLKALKSLFEHHKALDE 56
SE +L+A + LF K + E
Sbjct: 257 SEEALLEAERLLFTRTKQVVE 277
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 25.1 bits (54), Expect = 1.7
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 44 LKSLFEHHKALDEKGKGTA 62
L ++F ++LD+ G G
Sbjct: 868 LDAMFRAFRSLDKNGTGQI 886
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 25.2 bits (54), Expect = 1.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 44 LKSLFEHHKALDEKGKGTA 62
L+ LF+ K LD + GT
Sbjct: 669 LEILFKIFKQLDPENTGTI 687
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating
enzyme PAPA5, structural genomics, PSI protein
structure initiative; 2.75A {Mycobacterium
tuberculosis} SCOP: c.43.1.2 c.43.1.2
Length = 422
Score = 25.1 bits (55), Expect = 2.0
Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 8 LEALVSRHERSLRSTVV 24
+AL+ H L S +
Sbjct: 43 FDALLETHP-VLASHLE 58
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 24.4 bits (54), Expect = 2.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 36 SEAEVLKALKSLFEHHKALDE 56
S+ E++ LK K + E
Sbjct: 261 SDEELIDCLKFYAARMKIVVE 281
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 24.5 bits (54), Expect = 2.8
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 36 SEAEVLKALKSLFEHHKALDE 56
S+ E + A++ + K L E
Sbjct: 283 SDQEAVAAIEKFVDDEKILVE 303
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 24.4 bits (54), Expect = 3.0
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 36 SEAEVLKALKSLFEHHKALDE 56
+ E + A++ L + + L E
Sbjct: 243 EDTEAVSAVQQLLDDERMLVE 263
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 24.1 bits (53), Expect = 4.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 36 SEAEVLKALKSLFEHHKALDE 56
+E E+ A + ++E K L E
Sbjct: 263 TEDEIKCATQLVWERMKLLIE 283
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 23.8 bits (51), Expect = 4.4
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 5 LEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHK 52
E + S R ++R+ + V E +V + ++ HH
Sbjct: 136 FETSMWIYSIGNAKARD-FLRREFSARGDVFREEKVYITVPRIYRHHS 182
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensatio domain, peptide bond
formation, ligase; 1.85A {Brevibacillus brevis}
Length = 520
Score = 23.3 bits (51), Expect = 6.9
Identities = 7/15 (46%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 8 LEALVSRHERSLRST 22
+ L++RHE SLR++
Sbjct: 140 FQRLIARHE-SLRTS 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.126 0.322
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 894,307
Number of extensions: 36864
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 16
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)