RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6459
         (66 letters)



>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli
           [TaxId: 562]}
          Length = 175

 Score = 25.3 bits (55), Expect = 0.51
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 40  VLKALKSLFEHHKALDEKGKGTAFQ 64
           +   +   FEH+K L EKGK    +
Sbjct: 130 LKAQIAHFFEHYKDL-EKGKWVKVE 153


>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 173

 Score = 24.5 bits (53), Expect = 0.86
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 40  VLKALKSLFEHHKALDEK 57
            L  +   F+ +K L  K
Sbjct: 128 FLDEIAHFFKRYKELQGK 145


>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
           thermophilus [TaxId: 274]}
          Length = 174

 Score = 24.1 bits (52), Expect = 1.5
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 40  VLKALKSLFEHHKALDEK-GKGTAF 63
           V + ++  FE +KAL+ K GK    
Sbjct: 128 VKQEIQHFFETYKALEAKKGKWVKV 152


>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 284

 Score = 24.2 bits (52), Expect = 1.5
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 40  VLKALKSLFEHHKALDEK 57
           +L+A    F  +K  D K
Sbjct: 181 LLRATNEWFRIYKIPDGK 198


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.126    0.322 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 191,705
Number of extensions: 5530
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 6
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.2 bits)