BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6460
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 320 bits (819), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 160/198 (80%), Positives = 172/198 (86%), Gaps = 14/198 (7%)
Query: 13 IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
+GYQP K+ SI QAIYVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 283 VGYQPTLATDMGTMQERITTTKKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 341
Query: 60 AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
AIAELGIYPAVDPLDSTSRIMDPNI+G+EHY++ARGVQKILQDYKSLQDIIAILGMDELS
Sbjct: 342 AIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELS 401
Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
EEDKLTV+RARKIQRFLSQPFQVAEVFTGH GKLVPL+ETIKGF +ILAG+YDHLPE AF
Sbjct: 402 EEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAF 461
Query: 180 YMVGPIEEVVAKAETLAK 197
YMVGPIEE VAKA+ LA+
Sbjct: 462 YMVGPIEEAVAKADKLAE 479
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 320 bits (819), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 160/198 (80%), Positives = 172/198 (86%), Gaps = 14/198 (7%)
Query: 13 IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
+GYQP K+ SI QAIYVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 271 VGYQPTLATDMGTMQERITTTKKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 329
Query: 60 AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
AIAELGIYPAVDPLDSTSRIMDPNI+G+EHY++ARGVQKILQDYKSLQDIIAILGMDELS
Sbjct: 330 AIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELS 389
Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
EEDKLTV+RARKIQRFLSQPFQVAEVFTGH GKLVPL+ETIKGF +ILAG+YDHLPE AF
Sbjct: 390 EEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAF 449
Query: 180 YMVGPIEEVVAKAETLAK 197
YMVGPIEE VAKA+ LA+
Sbjct: 450 YMVGPIEEAVAKADKLAE 467
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 320 bits (819), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 160/198 (80%), Positives = 172/198 (86%), Gaps = 14/198 (7%)
Query: 13 IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
+GYQP K+ SI QAIYVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 283 VGYQPTLATDMGTMQERITTTKKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 341
Query: 60 AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
AIAELGIYPAVDPLDSTSRIMDPNI+G+EHY++ARGVQKILQDYKSLQDIIAILGMDELS
Sbjct: 342 AIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELS 401
Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
EEDKLTV+RARKIQRFLSQPFQVAEVFTGH GKLVPL+ETIKGF +ILAG+YDHLPE AF
Sbjct: 402 EEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAF 461
Query: 180 YMVGPIEEVVAKAETLAK 197
YMVGPIEE VAKA+ LA+
Sbjct: 462 YMVGPIEEAVAKADKLAE 479
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 319 bits (818), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 160/198 (80%), Positives = 172/198 (86%), Gaps = 14/198 (7%)
Query: 13 IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
+GYQP K+ SI QAIYVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 329 VGYQPTLATDMGTMQERITTTKKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 387
Query: 60 AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
AIAELGIYPAVDPLDSTSRIMDPNI+G+EHY++ARGVQKILQDYKSLQDIIAILGMDELS
Sbjct: 388 AIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELS 447
Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
EEDKLTV+RARKIQRFLSQPFQVAEVFTGH GKLVPL+ETIKGF +ILAG+YDHLPE AF
Sbjct: 448 EEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAF 507
Query: 180 YMVGPIEEVVAKAETLAK 197
YMVGPIEE VAKA+ LA+
Sbjct: 508 YMVGPIEEAVAKADKLAE 525
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 319 bits (818), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 160/198 (80%), Positives = 172/198 (86%), Gaps = 14/198 (7%)
Query: 13 IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
+GYQP K+ SI QAIYVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 281 VGYQPTLATDMGTMQERITTTKKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 339
Query: 60 AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
AIAELGIYPAVDPLDSTSRIMDPNI+G+EHY++ARGVQKILQDYKSLQDIIAILGMDELS
Sbjct: 340 AIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELS 399
Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
EEDKLTV+RARKIQRFLSQPFQVAEVFTGH GKLVPL+ETIKGF +ILAG+YDHLPE AF
Sbjct: 400 EEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAF 459
Query: 180 YMVGPIEEVVAKAETLAK 197
YMVGPIEE VAKA+ LA+
Sbjct: 460 YMVGPIEEAVAKADKLAE 477
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 319 bits (817), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 160/198 (80%), Positives = 171/198 (86%), Gaps = 14/198 (7%)
Query: 13 IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
+GYQP K+ SI QAIYVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 279 VGYQPTLATDMGTMQERITTTKKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 337
Query: 60 AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
AIAELGIYPAVDPLDSTSRIMDPNI+G+EHY++ARGVQKILQDYKSLQDIIAILGMDELS
Sbjct: 338 AIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELS 397
Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
EEDKLTV+RARKIQRFLSQPFQVAEVFTGH GKLVPL+ETIKGF +ILAG YDHLPE AF
Sbjct: 398 EEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGDYDHLPEQAF 457
Query: 180 YMVGPIEEVVAKAETLAK 197
YMVGPIEE VAKA+ LA+
Sbjct: 458 YMVGPIEEAVAKADKLAE 475
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 317 bits (811), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 159/198 (80%), Positives = 171/198 (86%), Gaps = 14/198 (7%)
Query: 13 IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
+GYQP K+ SI QAI VPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 283 VGYQPTLATDMGTMQERITTTKKGSI-TSVQAIXVPADDLTDPAPATTFAHLDATTVLSR 341
Query: 60 AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
AIAELGIYPAVDPLDSTSRIMDPNI+G+EHY++ARGVQKILQDYKSLQDIIAILGMDELS
Sbjct: 342 AIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELS 401
Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
EEDKLTV+RARKIQRFLSQPFQVAEVFTGH GKLVPL+ETIKGF +ILAG+YDHLPE AF
Sbjct: 402 EEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAF 461
Query: 180 YMVGPIEEVVAKAETLAK 197
YMVGPIEE VAKA+ LA+
Sbjct: 462 YMVGPIEEAVAKADKLAE 479
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 265 bits (678), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 132/195 (67%), Positives = 149/195 (76%), Gaps = 12/195 (6%)
Query: 13 IGYQPDCLKRFSIF------------LPAQAIYVPADDLTDPAPATTFAHLDATTVLSRA 60
+GYQP + + QA+YVPADDLTDP+PATTFAHLDAT VLSR
Sbjct: 265 VGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQ 324
Query: 61 IAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE 120
IA LGIYPAVDPLDSTSR +DP ++G EHY+ ARGVQ ILQ Y+ L+DIIAILGMDELSE
Sbjct: 325 IASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSE 384
Query: 121 EDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFY 180
EDKL VARARKIQRFLSQPF VAEVFTG GK V L++TI+GF I+ G+YDHLPE AFY
Sbjct: 385 EDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFY 444
Query: 181 MVGPIEEVVAKAETL 195
MVG IEE V KA+ L
Sbjct: 445 MVGSIEEAVEKAKKL 459
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 263 bits (673), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 132/196 (67%), Positives = 151/196 (77%), Gaps = 12/196 (6%)
Query: 13 IGYQPDCLKRFSIF------------LPAQAIYVPADDLTDPAPATTFAHLDATTVLSRA 60
+GYQP + QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 274 VGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRG 333
Query: 61 IAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE 120
I+ELGIYPAVDPLDS SR++D ++G EHY++A VQ+ LQ YKSLQDIIAILGMDELSE
Sbjct: 334 ISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSE 393
Query: 121 EDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFY 180
+DKLTV RARKIQRFLSQPF VAEVFTG GKLV L++T+ F +L GKYD++PE AFY
Sbjct: 394 QDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFY 453
Query: 181 MVGPIEEVVAKAETLA 196
MVG IE+VVAKAE LA
Sbjct: 454 MVGGIEDVVAKAEKLA 469
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 259 bits (661), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 131/196 (66%), Positives = 150/196 (76%), Gaps = 14/196 (7%)
Query: 13 IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
+GYQP K+ SI QAIYVPADD TDPAPATTFAHLDATT L R
Sbjct: 268 VGYQPTLATEMGQLQERITSTKKGSI-TSIQAIYVPADDYTDPAPATTFAHLDATTNLER 326
Query: 60 AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
+AE+GIYPAVDPL STSRI+ P ++G EHY +ARGVQ++LQ Y LQDIIAILGMDELS
Sbjct: 327 KLAEMGIYPAVDPLASTSRILSPAVVGEEHYRVARGVQQVLQRYNDLQDIIAILGMDELS 386
Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
+EDKL VARARKIQRFLSQPF VAE FTG GK VP++ET++GF EIL GK+D+LPE AF
Sbjct: 387 DEDKLIVARARKIQRFLSQPFHVAEQFTGMPGKYVPVKETVRGFKEILEGKHDNLPEEAF 446
Query: 180 YMVGPIEEVVAKAETL 195
YMVG I+E V KA+ L
Sbjct: 447 YMVGTIDEAVEKAKKL 462
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 254 bits (649), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/189 (66%), Positives = 145/189 (76%), Gaps = 12/189 (6%)
Query: 13 IGYQPDCLKRFSIF------------LPAQAIYVPADDLTDPAPATTFAHLDATTVLSRA 60
+GYQP + QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 285 VGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRG 344
Query: 61 IAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE 120
I+ELGIYPAVDPLDS SR++D ++G EHY++A VQ+ LQ YKSLQDIIAILGMDELSE
Sbjct: 345 ISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSE 404
Query: 121 EDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFY 180
+DKLTV RARKIQRFLSQPF VAEVFTG GKLV L++T+ F +L GKYD++PE AFY
Sbjct: 405 QDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFY 464
Query: 181 MVGPIEEVV 189
MVG IE+VV
Sbjct: 465 MVGGIEDVV 473
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 254 bits (649), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/189 (66%), Positives = 145/189 (76%), Gaps = 12/189 (6%)
Query: 13 IGYQPDCLKRFSIF------------LPAQAIYVPADDLTDPAPATTFAHLDATTVLSRA 60
+GYQP + QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 279 VGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRG 338
Query: 61 IAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE 120
I+ELGIYPAVDPLDS SR++D ++G EHY++A VQ+ LQ YKSLQDIIAILGMDELSE
Sbjct: 339 ISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSE 398
Query: 121 EDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFY 180
+DKLTV RARKIQRFLSQPF VAEVFTG GKLV L++T+ F +L GKYD++PE AFY
Sbjct: 399 QDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFY 458
Query: 181 MVGPIEEVV 189
MVG IE+VV
Sbjct: 459 MVGGIEDVV 467
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 254 bits (648), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/189 (66%), Positives = 145/189 (76%), Gaps = 12/189 (6%)
Query: 13 IGYQPDCLKRFSIF------------LPAQAIYVPADDLTDPAPATTFAHLDATTVLSRA 60
+GYQP + QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 274 VGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRG 333
Query: 61 IAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE 120
I+ELGIYPAVDPLDS SR++D ++G EHY++A VQ+ LQ YKSLQDIIAILGMDELSE
Sbjct: 334 ISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSE 393
Query: 121 EDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFY 180
+DKLTV RARKIQRFLSQPF VAEVFTG GKLV L++T+ F +L GKYD++PE AFY
Sbjct: 394 QDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFY 453
Query: 181 MVGPIEEVV 189
MVG IE+VV
Sbjct: 454 MVGGIEDVV 462
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 253 bits (647), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/189 (66%), Positives = 145/189 (76%), Gaps = 12/189 (6%)
Query: 13 IGYQPDCLKRFSIF------------LPAQAIYVPADDLTDPAPATTFAHLDATTVLSRA 60
+GYQP + QA+YVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 312 VGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRG 371
Query: 61 IAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE 120
I+ELGIYPAVDPLDS SR++D ++G EHY++A VQ+ LQ YKSLQDIIAILGMDELSE
Sbjct: 372 ISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSE 431
Query: 121 EDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFY 180
+DKLTV RARKIQRFLSQPF VAEVFTG GKLV L++T+ F +L GKYD++PE AFY
Sbjct: 432 QDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFY 491
Query: 181 MVGPIEEVV 189
MVG IE+VV
Sbjct: 492 MVGGIEDVV 500
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 253 bits (646), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/160 (76%), Positives = 139/160 (86%)
Query: 30 QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 89
QA+YVPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDS SR++D ++G EH
Sbjct: 314 QAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEH 373
Query: 90 YNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGH 149
Y++A VQ+ LQ YKSLQDIIAILGMDELSE+DKLTV RARKIQRFLSQPF VAEVFTG
Sbjct: 374 YDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGI 433
Query: 150 AGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVV 189
GKLV L++T+ F +L GKYD++PE AFYMVG IE+VV
Sbjct: 434 PGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVV 473
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 247 bits (630), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 122/166 (73%), Positives = 138/166 (83%)
Query: 30 QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 89
QA+YVPADDLTDPAPATTFAHLDATTVLSR +A GIYPAVDPLDSTS ++ P I+G EH
Sbjct: 325 QAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEH 384
Query: 90 YNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGH 149
Y IA+ V++ LQ YK LQDIIAILG+DELSEED+LTVARARKI+RFLSQPF VAEVFTG
Sbjct: 385 YEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGS 444
Query: 150 AGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETL 195
GK V L ETI+GF IL+G+ D LPE AFY+VG I+E AKA L
Sbjct: 445 PGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNL 490
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 240 bits (612), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 117/167 (70%), Positives = 134/167 (80%)
Query: 30 QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 89
QAIYVPADD TDPAPATTF+HLDATT L R +AE+GIYPAVDPL STSR + P I+G EH
Sbjct: 304 QAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGEEH 363
Query: 90 YNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGH 149
Y +AR VQ+ L+ YK LQDIIAILGMDELS+EDKL V RAR+IQ FLSQ F VAE FTG
Sbjct: 364 YQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQ 423
Query: 150 AGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLA 196
G VP++ET++GF EIL GKYDHLPE F +VG IEEVV KA+ +
Sbjct: 424 PGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAMG 470
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 34 VPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGA-----E 88
+P DD T P P T + LSR + GIYP +DPL S SR+M+ N +G +
Sbjct: 316 MPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMN-NGVGKGKTRED 374
Query: 89 HYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFL 136
H ++ + + ++ ++AI+G D L+E D+ + A +RF
Sbjct: 375 HKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFF 422
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 34 VPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGA-----E 88
+P DD T P P T + LSR + GIYP +DPL S SR+M+ N +G +
Sbjct: 316 MPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMN-NGVGKGKTRED 374
Query: 89 HYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFL 136
H ++ + + ++ ++AI+G D L+E D+ + A +RF
Sbjct: 375 HKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFF 422
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 32 IYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYN 91
+ + +D++ DP + LD VL+R +AE +PA+D S SR+M N++ +EH
Sbjct: 221 VLLESDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMH-NVVTSEHLR 279
Query: 92 IARGVQKILQDYKSLQDIIAI--LGMDELSEEDKLTVARARKIQRFLSQ 138
A +K++ YK+ + +I I M + E DK + + IQ F+ Q
Sbjct: 280 AAAECKKLIATYKNPELLIRIGEYTMGQDPEADK-AIKNRKLIQNFIQQ 327
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 32 IYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYN 91
+ DD DP + A LD VLSR +AE G YPA+D S SR M +I +HY
Sbjct: 310 VLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMT-ALITEQHYA 368
Query: 92 IARGVQKILQDYKSLQDIIAI 112
R +++L ++ +D++++
Sbjct: 369 RVRLFKQLLSSFQRNRDLVSV 389
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 34 VPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGA-----E 88
+P DD+T P P + + V++R + GIYP ++ L S SR+M+ IGA +
Sbjct: 314 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSG-IGAGKTRED 372
Query: 89 HYNIARGVQKILQDYKSLQDIIAILGMDELSEED 122
H ++ + + + L+ ++AI+G + LSE D
Sbjct: 373 HKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 406
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 32 IYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGA---- 87
+ +P DD+T P P + + V++R + GIYP ++ L S SR+M+ IGA
Sbjct: 303 LSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSG-IGAGKTR 361
Query: 88 -EHYNIARGVQKILQDYKSLQDIIAILGMDELSEED 122
+H ++ + + + L+ ++AI+G + LSE D
Sbjct: 362 EDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 397
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 34 VPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGA-----E 88
+P DD+T P P + + V++R + GIYP ++ L S SR+M+ IGA +
Sbjct: 305 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSG-IGAGKTRED 363
Query: 89 HYNIARGVQKILQDYKSLQDIIAILGMDELSEED 122
H ++ + + + L+ ++AI+G + LSE D
Sbjct: 364 HKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 397
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 32 IYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGA---- 87
+ +P DD+T P P + + V++R + GIYP ++ L S SR+M+ IGA
Sbjct: 312 LSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSG-IGAGKTR 370
Query: 88 -EHYNIARGVQKILQDYKSLQDIIAILGMDELSEED 122
+H ++ + + + L+ ++AI+G + LSE D
Sbjct: 371 EDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 406
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 34 VPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGA-----E 88
+P DD+T P P + + V++R + GIYP ++ L S SR+M+ IGA +
Sbjct: 305 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSG-IGAGKTRED 363
Query: 89 HYNIARGVQKILQDYKSLQDIIAILGMDELSEED 122
H ++ + + + L+ ++AI+G + LSE D
Sbjct: 364 HKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERD 397
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS-------RIMDPN 83
A+ D+++P T + L ++A+ +P+++ + S S R MD
Sbjct: 396 AVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMD-Q 454
Query: 84 IIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ-PFQ 141
I+ + ++ +ILQ+ + L +I+ ++G+D LS+ D+LT+ A+ I+ +L Q F
Sbjct: 455 ILQQDWSDMVTEGMRILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFD 514
Query: 142 VAEVFT 147
+ FT
Sbjct: 515 DVDTFT 520
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 32 IYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI-IGAEHY 90
+ +P DD T P P T + +L+R + + GI P +D L S SR+ D G
Sbjct: 311 LTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTRE 370
Query: 91 NIARGVQKILQDY---KSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQPFQVAEVF 146
+ A + ++ Y K +++ +LG LS+ DK+ A + + +++Q F
Sbjct: 371 DHAATMNQLFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYTNRTI 430
Query: 147 T 147
T
Sbjct: 431 T 431
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 35 PADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI-IGAEHYNIA 93
P DD T P P T + +L+R + + GI P +D L S SR+ D G + A
Sbjct: 314 PEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHA 373
Query: 94 RGVQKILQDY---KSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQPFQVAEVFT 147
++ Y K +++ +LG LS+ DK+ A + + +++Q F T
Sbjct: 374 ATXNQLFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYTNRTIT 431
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS-------RIMDPN 83
A+ D+++P T + L ++A+ +P+++ + S S R D
Sbjct: 396 AVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYXD-Q 454
Query: 84 IIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ-PFQ 141
I+ + + +ILQ+ + L +I+ ++G+D LS+ D+LT+ A+ I+ +L Q F
Sbjct: 455 ILQQDWSDXVTEGXRILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFD 514
Query: 142 VAEVFT 147
+ FT
Sbjct: 515 DVDTFT 520
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS---RIMDP----N 83
A+ P D+++P +T + A L ++A +PA++ S S +DP N
Sbjct: 383 AVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYREN 442
Query: 84 IIGAEHYNIAR-GVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
+ AE Y R + ++LQ LQ+I+ ++G D L + ++L + R I+ FL Q
Sbjct: 443 V--AEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQ 497
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS---RIMDP----N 83
A+ P D+++P +T + A L ++A +PA++ S S +DP N
Sbjct: 383 AVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYREN 442
Query: 84 IIGAEHYNIAR-GVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
+ AE Y R + ++LQ LQ+I+ ++G D L + ++L + R I+ FL Q
Sbjct: 443 V--AEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQ 497
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHWPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 31 AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP------NI 84
A+ P D ++P T + L +A +PA++ L S S +D
Sbjct: 391 AVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKN 450
Query: 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 138
I E + +LQ LQ+I+ I+G D L E ++ + AR ++ +L Q
Sbjct: 451 IDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505
>pdb|3GIP|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIP|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIQ|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate.
pdb|3GIQ|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate
Length = 480
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 60 AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAIL 113
AI ELG +PA D++ +I+ P I ++ V+K +K+ Q I ++
Sbjct: 38 AIGELGAHPARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLRWKTSQGITTVV 91
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 36 ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARG 95
A D++ P + D LS + GI PA++ S SR+ I A +A
Sbjct: 324 AGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKA-MKKVAGK 382
Query: 96 VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPF--------QVAEVFT 147
++ L + L+ +L + + +AR ++++ L QP QV ++T
Sbjct: 383 LKLELAQFAELEAFAQF--ASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYT 440
Query: 148 GHAGKLVPLE 157
G G L LE
Sbjct: 441 GTNGYLDSLE 450
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 22/159 (13%)
Query: 32 IYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYN 91
I A D++ P + D L + GI PAV+P S SR+ GA
Sbjct: 330 IETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVG-----GAAQTK 384
Query: 92 IAR----GVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQ----PFQVA 143
I + G++ L Y+ L +L + + + +K+ L Q P VA
Sbjct: 385 IMKKLSGGIRTALAQYRELAAFSQF--ASDLDDATRKQLDHGQKVTELLKQKQYAPMSVA 442
Query: 144 E----VFTGHAGKLVPLEETIKGFSEILAGKY---DHLP 175
+ +F G L +E + G E Y DH P
Sbjct: 443 QQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAP 481
>pdb|1HLB|A Chain A, Structural Analysis Of Monomeric Hemichrome And Dimeric
Cyanomet Hemoglobins From Caudina Arenicola
Length = 158
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 54 TTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNI 92
++++S + EL + L + +R D N +GA+HYN+
Sbjct: 79 SSIMSEYVEELDSDILPELLATLARTHDLNKVGADHYNL 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,585,071
Number of Sequences: 62578
Number of extensions: 211897
Number of successful extensions: 543
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 50
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)