Query psy6460
Match_columns 198
No_of_seqs 157 out of 1432
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 18:28:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09280 F0F1 ATP synthase sub 100.0 6.4E-59 1.4E-63 429.9 17.9 191 4-195 259-462 (463)
2 TIGR01039 atpD ATP synthase, F 100.0 1.3E-58 2.8E-63 427.2 18.0 190 4-194 258-460 (461)
3 PRK12597 F0F1 ATP synthase sub 100.0 8.7E-58 1.9E-62 422.7 17.6 189 4-193 258-459 (461)
4 CHL00060 atpB ATP synthase CF1 100.0 1.1E-57 2.4E-62 423.6 18.2 192 4-196 283-487 (494)
5 TIGR03305 alt_F1F0_F1_bet alte 100.0 7.2E-57 1.6E-61 415.1 16.0 183 4-187 253-448 (449)
6 COG0055 AtpD F0F1-type ATP syn 100.0 1.4E-56 3E-61 402.5 17.1 192 5-197 263-467 (468)
7 KOG1350|consensus 100.0 1.2E-51 2.6E-56 365.9 15.5 192 5-197 313-517 (521)
8 COG1157 FliI Flagellar biosynt 100.0 1.6E-50 3.6E-55 367.1 12.6 152 5-168 275-440 (441)
9 PRK06936 type III secretion sy 100.0 2.3E-46 4.9E-51 344.7 14.5 152 4-167 273-438 (439)
10 PRK08472 fliI flagellum-specif 100.0 3E-46 6.4E-51 343.8 15.0 152 4-167 267-433 (434)
11 PRK05688 fliI flagellum-specif 100.0 6.4E-46 1.4E-50 342.7 15.2 153 4-168 279-447 (451)
12 PRK07594 type III secretion sy 100.0 5E-46 1.1E-50 342.2 14.4 153 4-168 266-432 (433)
13 PRK07196 fliI flagellum-specif 100.0 5E-46 1.1E-50 342.3 14.4 153 4-168 266-433 (434)
14 TIGR03498 FliI_clade3 flagella 100.0 8.2E-46 1.8E-50 339.8 14.7 152 4-167 251-418 (418)
15 PRK06820 type III secretion sy 100.0 1E-45 2.3E-50 340.6 15.3 153 4-168 274-440 (440)
16 PRK08927 fliI flagellum-specif 100.0 1.3E-45 2.8E-50 340.0 14.9 154 4-169 269-438 (442)
17 PRK08972 fliI flagellum-specif 100.0 1.6E-45 3.4E-50 339.0 15.1 153 4-168 273-441 (444)
18 PRK09099 type III secretion sy 100.0 2.6E-45 5.6E-50 338.2 15.4 152 5-168 275-440 (441)
19 PRK08149 ATP synthase SpaL; Va 100.0 2.4E-45 5.3E-50 337.2 14.9 152 4-167 262-427 (428)
20 TIGR03324 alt_F1F0_F1_al alter 100.0 4.3E-45 9.3E-50 339.9 16.2 161 5-179 276-453 (497)
21 TIGR03497 FliI_clade2 flagella 100.0 4.6E-45 1E-49 334.5 15.6 152 4-167 248-413 (413)
22 PRK13343 F0F1 ATP synthase sub 100.0 6.2E-45 1.3E-49 339.6 16.3 161 5-179 276-453 (502)
23 TIGR02546 III_secr_ATP type II 100.0 4.3E-45 9.2E-50 335.5 14.7 153 4-168 256-422 (422)
24 PRK07960 fliI flagellum-specif 100.0 1.3E-44 2.8E-49 333.8 15.6 153 4-168 286-454 (455)
25 PRK06002 fliI flagellum-specif 100.0 1.2E-44 2.5E-49 334.1 15.1 155 4-171 275-445 (450)
26 PRK09281 F0F1 ATP synthase sub 100.0 2.1E-44 4.6E-49 336.6 16.4 161 5-179 276-453 (502)
27 TIGR03496 FliI_clade1 flagella 100.0 1.2E-44 2.7E-49 331.5 13.0 148 4-163 248-411 (411)
28 TIGR01042 V-ATPase_V1_A V-type 100.0 2.1E-44 4.5E-49 338.9 14.2 157 4-168 346-529 (591)
29 TIGR01043 ATP_syn_A_arch ATP s 100.0 3.4E-44 7.5E-49 338.0 14.1 157 4-168 340-524 (578)
30 TIGR01041 ATP_syn_B_arch ATP s 100.0 8.3E-44 1.8E-48 329.5 15.5 160 4-179 259-439 (458)
31 TIGR00962 atpA proton transloc 100.0 1.4E-43 3.1E-48 331.0 16.5 160 5-178 275-451 (501)
32 PRK06315 type III secretion sy 100.0 1.4E-43 3E-48 326.7 14.5 151 5-167 277-441 (442)
33 PRK04196 V-type ATP synthase s 100.0 1.8E-43 3.9E-48 327.6 14.6 171 4-192 261-452 (460)
34 PRK04192 V-type ATP synthase s 100.0 1.7E-43 3.6E-48 333.8 13.8 157 4-168 345-527 (586)
35 CHL00059 atpA ATP synthase CF1 100.0 3.7E-43 7.9E-48 326.0 15.2 162 4-179 254-432 (485)
36 TIGR01040 V-ATPase_V1_B V-type 100.0 2.4E-42 5.2E-47 318.9 15.7 171 4-192 268-459 (466)
37 PRK05922 type III secretion sy 100.0 2.6E-42 5.7E-47 317.5 15.8 151 4-168 268-432 (434)
38 TIGR01026 fliI_yscN ATPase Fli 100.0 1.7E-42 3.7E-47 319.7 14.5 152 4-167 274-439 (440)
39 PRK07165 F0F1 ATP synthase sub 100.0 6.8E-42 1.5E-46 318.8 15.2 159 4-176 254-426 (507)
40 PRK06793 fliI flagellum-specif 100.0 9.2E-42 2E-46 313.9 14.6 151 4-167 267-432 (432)
41 cd01136 ATPase_flagellum-secre 100.0 5.2E-41 1.1E-45 299.6 11.8 133 4-138 180-326 (326)
42 PRK14698 V-type ATP synthase s 100.0 9.2E-41 2E-45 331.7 13.8 157 4-168 774-958 (1017)
43 PRK07721 fliI flagellum-specif 100.0 3.2E-40 6.9E-45 304.5 14.5 152 5-168 270-435 (438)
44 PTZ00185 ATPase alpha subunit; 100.0 4.5E-39 9.8E-44 300.2 15.3 156 5-179 311-483 (574)
45 PRK02118 V-type ATP synthase s 100.0 9.6E-39 2.1E-43 293.7 14.1 160 4-192 252-429 (436)
46 COG1156 NtpB Archaeal/vacuolar 100.0 6.9E-33 1.5E-37 251.0 12.8 170 5-192 265-455 (463)
47 COG0056 AtpA F0F1-type ATP syn 100.0 7.9E-31 1.7E-35 239.9 12.7 160 6-179 277-453 (504)
48 KOG1352|consensus 100.0 9.9E-32 2.1E-36 243.6 5.0 157 4-168 365-548 (618)
49 COG1155 NtpA Archaeal/vacuolar 100.0 5.2E-31 1.1E-35 244.4 8.1 143 4-147 342-512 (588)
50 PRK12608 transcription termina 100.0 2.2E-30 4.7E-35 234.8 8.5 106 5-113 242-362 (380)
51 cd01133 F1-ATPase_beta F1 ATP 100.0 4.8E-30 1E-34 224.4 5.3 77 4-81 184-273 (274)
52 cd01132 F1_ATPase_alpha F1 ATP 100.0 9.4E-30 2E-34 222.5 5.4 76 4-80 182-274 (274)
53 cd01135 V_A-ATPase_B V/A-type 100.0 1.1E-29 2.4E-34 222.2 5.3 75 4-79 187-276 (276)
54 TIGR00767 rho transcription te 100.0 1.2E-28 2.7E-33 225.1 8.8 106 5-113 277-397 (415)
55 KOG1351|consensus 100.0 1.6E-28 3.4E-33 216.9 9.0 153 5-168 291-463 (489)
56 PRK09376 rho transcription ter 99.9 1E-27 2.2E-32 218.6 8.9 106 5-113 278-398 (416)
57 cd01134 V_A-ATPase_A V/A-type 99.9 3.1E-28 6.8E-33 219.2 5.4 75 4-79 275-369 (369)
58 PRK12678 transcription termina 99.9 4.6E-26 9.9E-31 215.3 8.2 103 9-113 534-645 (672)
59 PF00006 ATP-synt_ab: ATP synt 99.9 2.4E-26 5.2E-31 194.9 2.3 73 4-77 126-215 (215)
60 cd01128 rho_factor Transcripti 99.9 8.6E-25 1.9E-29 188.9 7.9 106 5-113 125-245 (249)
61 PF00306 ATP-synt_ab_C: ATP sy 99.5 2.6E-13 5.7E-18 103.9 9.6 95 90-187 1-96 (113)
62 KOG1353|consensus 99.4 2.1E-13 4.5E-18 118.7 5.9 103 35-141 223-325 (340)
63 COG1158 Rho Transcription term 99.3 3.1E-12 6.7E-17 115.1 4.8 94 14-109 296-398 (422)
64 COG1155 NtpA Archaeal/vacuolar 82.3 1.2 2.6E-05 43.1 3.0 142 24-168 378-526 (588)
65 KOG0506|consensus 48.3 9.1 0.0002 36.9 1.2 51 53-106 143-193 (622)
66 cd01120 RecA-like_NTPases RecA 47.1 19 0.00041 26.9 2.7 38 21-59 124-165 (165)
67 TIGR01040 V-ATPase_V1_B V-type 36.5 68 0.0015 30.7 5.1 37 91-128 370-407 (466)
68 PF15219 TEX12: Testis-express 33.4 1.6E+02 0.0035 22.3 5.6 54 86-140 31-84 (100)
69 TIGR01041 ATP_syn_B_arch ATP s 29.4 91 0.002 29.7 4.7 48 89-137 359-407 (458)
70 PLN02729 PSII-Q subunit 26.4 1.1E+02 0.0025 26.4 4.3 49 91-147 118-167 (220)
71 PF05484 LRV_FeS: LRV protein 23.3 48 0.001 22.8 1.2 19 127-145 38-56 (57)
72 PRK04196 V-type ATP synthase s 22.6 1.5E+02 0.0033 28.2 4.8 46 90-136 362-408 (460)
73 KOG0563|consensus 21.2 22 0.00048 34.0 -1.0 63 127-195 82-144 (499)
74 KOG3062|consensus 20.9 57 0.0012 28.9 1.5 47 2-51 117-175 (281)
75 PF06018 CodY: CodY GAF-like d 20.5 1.6E+02 0.0035 24.5 4.0 34 125-168 2-35 (177)
No 1
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=6.4e-59 Score=429.87 Aligned_cols=191 Identities=75% Similarity=1.096 Sum_probs=186.1
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||||| ++||| |+||||++||||++|||+|++++|+||||+|||+||++||||||
T Consensus 259 l~~gepP~~~GYPpsvfs~l~~L~ERag~~~~GSI-Tai~tVl~~gdD~~dPI~d~~~silDGhIvLsr~La~~g~yPAI 337 (463)
T PRK09280 259 ALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSI-TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAV 337 (463)
T ss_pred HhcCCCCcccCcCchHHHHHHHHHHHhcCCCCCce-eEEEEEECcCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCcc
Confidence 47899999999999999 67999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHA 150 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~ 150 (198)
||+.|+||+|++.+++++|+++++++|++|++|+++++++++||+++++|.++++|++++.|++||+|+++++++||+.+
T Consensus 338 Dvl~S~SR~~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~i~gy~~~sd~~d~ai~~~~~i~~fL~Q~~~~~~~ft~~~ 417 (463)
T PRK09280 338 DPLDSTSRILDPLIVGEEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVAEQFTGSP 417 (463)
T ss_pred CCccccccccccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCccCCHHHHHHHHhhHHHHHhccCCcchhhcccCCC
Confidence 99999999996688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHHh
Q psy6460 151 GKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETL 195 (198)
Q Consensus 151 ~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~ 195 (198)
++.+++++++..|.+|++|++|++||.+|||+|+++|+.+|++++
T Consensus 418 ~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 462 (463)
T PRK09280 418 GKYVPLKDTIRGFKEILEGEYDHLPEQAFYMVGTIEEAIEKAKKL 462 (463)
T ss_pred CcccCHHHHHHHHHHHhCCCccCCCHHHHhccCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998765
No 2
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=1.3e-58 Score=427.21 Aligned_cols=190 Identities=75% Similarity=1.122 Sum_probs=185.4
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||||| ++||| |+||||++||||++|||+|++++|+||||+|||+||++||||||
T Consensus 258 l~~gepP~~~GYPpsvfs~l~~L~ERag~~~~GSI-Tai~tVl~~gdD~~dPi~d~~~silDGhIvLsr~La~~g~yPAI 336 (461)
T TIGR01039 258 ALLGRMPSAVGYQPTLATEMGELQERITSTKTGSI-TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAV 336 (461)
T ss_pred HhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCCCce-eEEEEEEccCCCCCCccHHHHHHhcceEEEECHHHHhCCCCCCc
Confidence 37899999999999999 68999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHA 150 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~ 150 (198)
||+.|+||+|++.+++++|+++|+++|++|++|+++++|+++||+++++|.+++++++++.|++||+|+++++++||+.+
T Consensus 337 Dvl~S~SR~~~~~~~~~~h~~~a~~~r~~la~y~e~~~li~i~g~~~lsd~~~~~l~~~~~i~~fL~Q~~~~~~~~t~~~ 416 (461)
T TIGR01039 337 DPLDSTSRLLDPSVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSEEDKLTVERARRIQRFLSQPFFVAEVFTGQP 416 (461)
T ss_pred CCccccccccCCccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCccCCHHHHHHHHhHHHHHHHhCCCCchhccccCCC
Confidence 99999999997789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHH
Q psy6460 151 GKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAET 194 (198)
Q Consensus 151 ~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~ 194 (198)
++++++++++..|.+|++|++|++||++|||+|+++|+.+|+++
T Consensus 417 ~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (461)
T TIGR01039 417 GKYVPLKDTIRGFKEILEGKYDHLPEQAFYMVGTIEEVVEKAKK 460 (461)
T ss_pred CcccCHHHHHHHHHHHhCCCccCCCHHHHhccCcHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999754
No 3
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=8.7e-58 Score=422.72 Aligned_cols=189 Identities=54% Similarity=0.870 Sum_probs=183.7
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||||| ++||| |+||||++||||++|||+|++++||||||+|||+||++||||||
T Consensus 258 l~~gepP~~~GYPpsvfs~l~~l~ERag~~~~GSI-T~i~tVl~~~dD~~dPI~d~~~~ilDG~IvLsr~La~~g~yPAI 336 (461)
T PRK12597 258 GLLGRMPSRVGYQPTLASEVAELQERIASTKNGSI-TSIQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAI 336 (461)
T ss_pred HhcCCCCCcCCcCchhHHHHHHHHHhhcCCCCccc-cEEEEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCcc
Confidence 47899999999999999 67999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHA 150 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~ 150 (198)
||+.|+||+|++.+++++|+++++++|++|++|+++++|+++||+++++++++.+++++++|++||+|+++++++||+.+
T Consensus 337 Dvl~S~SR~~~~~i~~~~h~~~a~~~r~~la~y~e~e~li~i~gy~~l~~~~d~~i~~~~~i~~fL~Q~~~~~~~~t~~~ 416 (461)
T PRK12597 337 DPLASSSNLLDPLVVGERHYDAAIEVKRILQRYKELEDVIAILGIDELSAEDKIIVKRARQLQRFLTQPFFVTEAFTGEP 416 (461)
T ss_pred CCccccccccccccCCHHHHHHHHHHHHHHHhhhhHHHHHHHcCCccCCHHHHHHHHhHHHHHHHhCCCcchhhcccCCC
Confidence 99999999996689999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHH
Q psy6460 151 GKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAE 193 (198)
Q Consensus 151 ~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~ 193 (198)
+++++++++++.|++|++|++|++||.+|||+|+++|+.+|.+
T Consensus 417 ~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~ 459 (461)
T PRK12597 417 GVSVPLEETLDSCERILNGEYDDWSEESFYMIGSLDDLRTKEE 459 (461)
T ss_pred CcccCHHHHHHHHHHHhCCCccCCCHHHHhccCcHHHHHhHhh
Confidence 9999999999999999999999999999999999999988865
No 4
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=1.1e-57 Score=423.61 Aligned_cols=192 Identities=67% Similarity=0.972 Sum_probs=186.0
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||||| .+||| |+||||++||||++|||+|++++||||||+|||+||++||||||
T Consensus 283 l~~gepP~~~GYPpsvfs~l~~LlERaG~~~~GSI-Tai~tVl~~gdD~tdPI~d~~~silDGhIvLsr~La~~G~yPAI 361 (494)
T CHL00060 283 ALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSI-TSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAV 361 (494)
T ss_pred HhcCCCCCCCCcCCCHHHHhHHHHHhccCCCCCCe-eEEEEEECCCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCc
Confidence 36899999999999999 67999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHA 150 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~ 150 (198)
||+.|+||++.+.+++++|+++|+++|++|++|+++++++++||+++++++++.+++++++|++||+|++++++.||+.+
T Consensus 362 Dvl~SvSR~~~~~~v~~~h~~~a~~~r~~la~y~e~e~li~~~g~~~ls~~~~~~i~~~~~i~~fL~Q~~f~~e~ft~~~ 441 (494)
T CHL00060 362 DPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSP 441 (494)
T ss_pred CCccchhhhcccccCCHHHHHHHHHHHHHHHHhHHHHHHHHHhCcccCCHHHHHHHHhHHHHHHHhcCCcchhhcccCCC
Confidence 99999999943799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHHhh
Q psy6460 151 GKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLA 196 (198)
Q Consensus 151 ~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~~ 196 (198)
++++++++++..|.+|+.|++|++|+..|||+|+++++.+|+++++
T Consensus 442 ~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~ 487 (494)
T CHL00060 442 GKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKAANLE 487 (494)
T ss_pred CcccCHHHHHHHHHHHhCCCccCCCHHHhhccCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987664
No 5
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=7.2e-57 Score=415.15 Aligned_cols=183 Identities=48% Similarity=0.812 Sum_probs=178.7
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++|||||+| ++||| |+||||++||||++|||++++++||||||||||+||++||||||
T Consensus 253 l~~ge~P~~~GYP~~vfs~l~~L~ERag~~~~GSI-T~i~~V~~~~dD~~dPi~d~~~silDG~IvLsr~La~~g~yPAI 331 (449)
T TIGR03305 253 GLLGQMPSRLGYQPTLGTELAELEERIATTSDGAI-TSIQAVYVPADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAI 331 (449)
T ss_pred HHcCCCCCccCcCchHHHHhHHHHHhhcCCCCcCe-eEEEEEEccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCcc
Confidence 37899999999999999 67999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHA 150 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~ 150 (198)
||+.|+||+|++.+++++|+++++++|++|++|+|+++++++||+++++++++.+++++++|++||+|+++++|+||+.+
T Consensus 332 Dvl~S~SR~~~~~i~~~~h~~~a~~~~~~l~~y~e~~~li~~~g~~~l~~~~~~~i~~~~~i~~fL~Q~~~~~e~~t~~~ 411 (449)
T TIGR03305 332 DPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLEQLSREDRRVVNRARRLERFLTQPFFTTEQFTGMK 411 (449)
T ss_pred CCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHHHHHHHHHhCCCCcccccccCCC
Confidence 99999999996688899999999999999999999999999999999999889999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHhCcCCCCccchhccccChHH
Q psy6460 151 GKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEE 187 (198)
Q Consensus 151 ~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~ 187 (198)
++++++++|++.+|+|++|++|++||..|||+|+++|
T Consensus 412 g~~v~l~~tl~~~~~il~g~~~~~~~~~~~~~g~~~~ 448 (449)
T TIGR03305 412 GKTVSLEDALDGCERILNDEFQDYPERDLYMIGKIDE 448 (449)
T ss_pred CceeEHHHHHHHHHHHhcCCcccCCHHHhhcccCccc
Confidence 9999999999999999999999999999999999986
No 6
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-56 Score=402.47 Aligned_cols=192 Identities=75% Similarity=1.092 Sum_probs=189.4
Q ss_pred ccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460 5 ASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 71 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID 71 (198)
.||++|++.||+|++. ++||| |++++|++|.||++||.|.++.+|||+.++|||++|+.|+|||||
T Consensus 263 lLGr~PSavGYQpTLatemg~lQERItstk~GSI-TSiQavyvPaDDlTDPapattFaHLDat~vLsR~ia~~GIyPAvD 341 (468)
T COG0055 263 LLGRMPSAVGYQPTLATEMGQLQERITSTKKGSI-TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVD 341 (468)
T ss_pred HhccCccccccCchhHHHHHHHHHHHhcCCCCce-EEEEEEEeccccCCCcchhhhhhhcccceeeeHhHHhcCCCcccC
Confidence 5899999999999998 89999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCCC
Q psy6460 72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAG 151 (198)
Q Consensus 72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~~ 151 (198)
||.|.||.+++.+++++|+++|++++++|++|++|||+|.+.|.|+||++|++++.++++|++||+|+|+++|+||+.+|
T Consensus 342 PL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdELseedk~~V~rArki~~FlSQpF~vAE~FTg~pG 421 (468)
T COG0055 342 PLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVAEVFTGSPG 421 (468)
T ss_pred cccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcChhHHHHHHHHHHHHHHhcCcchhhheecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHHhhc
Q psy6460 152 KLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAK 197 (198)
Q Consensus 152 ~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~~~ 197 (198)
+++++.+|++.+.+|++|+||++||++|||+|+|+|+++|++++++
T Consensus 422 ~~V~l~dti~~fk~Il~G~yd~~pE~aF~~vGsi~e~~eka~~~~~ 467 (468)
T COG0055 422 KYVPLKDTIRGFKRILEGKYDHLPEQAFYMVGSIEEAVEKAKKLGK 467 (468)
T ss_pred eeeeHHHHHHHHHHHhCCCcccCCHHHHhhcCcHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999876
No 7
>KOG1350|consensus
Probab=100.00 E-value=1.2e-51 Score=365.89 Aligned_cols=192 Identities=83% Similarity=1.184 Sum_probs=189.3
Q ss_pred ccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460 5 ASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 71 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID 71 (198)
.|||+|+..||+|++. ++||| |++++|++|.||++||.|..+.++||..-||||.+|+.|+|||+|
T Consensus 313 LLGRiPSAVGYQPTLaTdMG~mQERITtTkkGSi-TSvQAvYVPADDLtDPaPattFaHLDAttVLSR~iaelgIYPAVD 391 (521)
T KOG1350|consen 313 LLGRIPSAVGYQPTLATDMGTMQERITTTKKGSI-TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVD 391 (521)
T ss_pred HhccCccccccCcccccchhhhhHhhhccccCce-eEEEEEEeehhccCCCCccceeeccchhhhhhhhhHhcCCccccC
Confidence 4799999999999998 89999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCCC
Q psy6460 72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAG 151 (198)
Q Consensus 72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~~ 151 (198)
||.|.||+|++++++++|+.+|+.++++|+.|+.+||+|.+.|.|+||++|++++.++++|++||+|+|.++|.|||.++
T Consensus 392 PLDStSrimdp~ivG~eHY~vA~~Vqk~LQ~YKsLQDIIAILGmDELSEeDkLTV~RARKiqRFLSQPF~VAEvFTG~~G 471 (521)
T KOG1350|consen 392 PLDSTSRIMDPNIVGEEHYNVARGVQKTLQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHPG 471 (521)
T ss_pred CccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhchhhhhhHHHHHHHHHHHcCchhhhhhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHHhhc
Q psy6460 152 KLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAK 197 (198)
Q Consensus 152 ~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~~~ 197 (198)
+.+++++++..+..|+.|+||++||.+|||+|+|+|+++|++++++
T Consensus 472 klV~l~~ti~gF~~iL~Ge~D~lPE~AFYmvG~iee~~~KA~~la~ 517 (521)
T KOG1350|consen 472 KLVPLEETIRGFKAILEGEYDHLPEQAFYMVGGIEEVVAKAEKLAK 517 (521)
T ss_pred ceecHHHHHHHHHHHhcCcccCCchhheeeecCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876
No 8
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-50 Score=367.12 Aligned_cols=152 Identities=35% Similarity=0.505 Sum_probs=147.8
Q ss_pred ccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460 5 ASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 71 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID 71 (198)
|.||||+++||||||| .+||| |+|||||++|||++|||+|++|+||||||||||+||++|||||||
T Consensus 275 A~GEpP~~kGYppSVF~~LP~LlERaG~~~~GsI-TafYTVLveGDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaId 353 (441)
T COG1157 275 AAGEPPATKGYPPSVFSELPRLLERAGNGDKGSI-TAFYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAID 353 (441)
T ss_pred hcCCCCccCCCCchHHHHhHHHHhhcCCCCCCcE-EEEEEEEeecCCCCCchhhhhhhhccceEEeeHhHHhcCCCCCcc
Confidence 6899999999999999 68999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460 72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGHA 150 (198)
Q Consensus 72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~ 150 (198)
|+.|+||+| +++++++|+++|+++|++|++|+++++||++|+|.+++| +.|.+|++.+.|++||+|+.+
T Consensus 354 vl~SiSRvm-~~i~~~~h~~~a~~~r~lls~y~e~edLi~iGaY~~G~D~~~D~Ai~~~p~i~~fL~Q~~~--------- 423 (441)
T COG1157 354 VLASISRVM-PQIVSEEHRKAARRLRQLLSRYEENEDLIRIGAYQKGSDPELDKAIKLYPKIEQFLKQGID--------- 423 (441)
T ss_pred hHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHHhhHHHHHHHcCCcc---------
Confidence 999999999 799999999999999999999999999999999999998 899999999999999999986
Q ss_pred CcccCHHHHHHHHHHHHh
Q psy6460 151 GKLVPLEETIKGFSEILA 168 (198)
Q Consensus 151 ~~~~~l~etl~~l~~i~~ 168 (198)
+.++++++++.|.+++.
T Consensus 424 -e~~~~~~t~~~L~~~~~ 440 (441)
T COG1157 424 -EKSSFEETLEQLEAILS 440 (441)
T ss_pred -ccCCHHHHHHHHHHHhc
Confidence 79999999999999874
No 9
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2.3e-46 Score=344.71 Aligned_cols=152 Identities=28% Similarity=0.409 Sum_probs=145.7
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||||| ++||| |+||||++||||++|||+|++++|+||||+|||+||++||||||
T Consensus 273 l~~gepP~~~gyp~svfs~l~~l~ERaG~~~~GSI-T~i~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAI 351 (439)
T PRK06936 273 LAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSI-TALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAI 351 (439)
T ss_pred HhcCCCCccccCCccHHHHHHHHHHhhccCCCcce-eeeEEEEccCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCcc
Confidence 47899999999999999 68999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGH 149 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~ 149 (198)
||+.|+||+| +.+++++|+++++++|++|++|+++++++++|+|..++| +.|.++.++++|++||+|+++
T Consensus 352 Dvl~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~e~e~li~iG~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~-------- 422 (439)
T PRK06936 352 DVLRSASRVM-NQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEADQAIERIGAIRGFLRQGTH-------- 422 (439)
T ss_pred CCcccccccc-hhhCCHHHHHHHHHHHHHHHcchHHHHHHHhcCccCCCCHHHHHHHHhHHHHHHHcCCCCC--------
Confidence 9999999999 699999999999999999999999999999999987776 788999999999999999986
Q ss_pred CCcccCHHHHHHHHHHHH
Q psy6460 150 AGKLVPLEETIKGFSEIL 167 (198)
Q Consensus 150 ~~~~~~l~etl~~l~~i~ 167 (198)
+.+++++++..|.+++
T Consensus 423 --~~~~~~~~~~~l~~~~ 438 (439)
T PRK06936 423 --ELSHFNETLNLLETLT 438 (439)
T ss_pred --CCCCHHHHHHHHHHHh
Confidence 7899999999999986
No 10
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3e-46 Score=343.78 Aligned_cols=152 Identities=31% Similarity=0.446 Sum_probs=146.3
Q ss_pred cccCCCCccCCCCCCCC--------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 4 NASKSWFCIIGYQPDCL--------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf--------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
.+++|||+++||||++| ++||| |+||||++||||++|||+|++++|+||||+|||+||++|||||
T Consensus 267 l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~g~GSI-T~~~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~la~~g~~PA 345 (434)
T PRK08472 267 LALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSI-TAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPP 345 (434)
T ss_pred HhcCCCCCccCcCchHHHHHHHHHHHhccCCCCcee-eEeEEEEecCCCCCCCchHHhhhhcceEEEEcHHHHhCCCCCc
Confidence 36899999999999999 47999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcC
Q psy6460 70 VDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTG 148 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~ 148 (198)
|||+.|+||+| +.+++++|+++|+++|++|++|+++|+|+++|+|...+| +.|.+|+++++|++||+|+.+
T Consensus 346 IDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~------- 417 (434)
T PRK08472 346 INILNSASRVM-NDIISPEHKLAARKFKRLYSLLKENEVLIRIGAYQKGNDKELDEAISKKEFMEQFLKQNPN------- 417 (434)
T ss_pred cCCccccCccc-hhcCCHHHHHHHHHHHHHHHhchhHHHHHHhhCccCCCCHHHHHHHHhHHHHHHHhCCCCC-------
Confidence 99999999999 699999999999999999999999999999999988887 889999999999999999986
Q ss_pred CCCcccCHHHHHHHHHHHH
Q psy6460 149 HAGKLVPLEETIKGFSEIL 167 (198)
Q Consensus 149 ~~~~~~~l~etl~~l~~i~ 167 (198)
+.+++++++..|.+|+
T Consensus 418 ---~~~~~~~~~~~l~~~~ 433 (434)
T PRK08472 418 ---ELFPFEQTFEQLEEIL 433 (434)
T ss_pred ---CCCCHHHHHHHHHHHh
Confidence 7999999999999986
No 11
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.4e-46 Score=342.65 Aligned_cols=153 Identities=29% Similarity=0.423 Sum_probs=146.8
Q ss_pred cccCCCCccCCCCCCCC-------------C--CcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL-------------K--RFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~--~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.++||||+++||||||| . +||| |+||||++||||++|||+|++++|+||||+|||+||++||||
T Consensus 279 l~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~GSI-Tai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yP 357 (451)
T PRK05688 279 LAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSI-TAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYP 357 (451)
T ss_pred HhcCCCCcccCCCchHHHHhHHHHHHhcCCCCCCcee-eEEEEEEecCCCCCCchHHHHHhhccEEEEEcHHHHhCCCCC
Confidence 37899999999999999 2 7999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 69 AVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 69 AID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
||||+.|+||+| +.+++++|+++|+++|++|++|+++++++++|+|..++| +.|.+++++++|++||+|+.+
T Consensus 358 AIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~~~~dli~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~------ 430 (451)
T PRK05688 358 AIDIEASISRVM-PQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPHLVQFLRQGLR------ 430 (451)
T ss_pred ccCCccccCccc-hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHhhHHHHHHhCCCCC------
Confidence 999999999999 799999999999999999999999999999999987776 899999999999999999986
Q ss_pred CCCCcccCHHHHHHHHHHHHh
Q psy6460 148 GHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~ 168 (198)
+.+++++++..|.+|+.
T Consensus 431 ----e~~~~~~~~~~l~~~~~ 447 (451)
T PRK05688 431 ----ENVSLAQSREQLAAIFA 447 (451)
T ss_pred ----CCCCHHHHHHHHHHHhc
Confidence 78999999999999975
No 12
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=5e-46 Score=342.21 Aligned_cols=153 Identities=27% Similarity=0.358 Sum_probs=147.5
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||||| ++||| |+||||++||||++|||+|++++|+||||+|||+||++||||||
T Consensus 266 l~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~GSI-T~~~tVl~~gdD~~dpi~d~~~~ilDG~IvLsr~la~~g~yPAI 344 (433)
T PRK07594 266 LAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI-TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI 344 (433)
T ss_pred HhcCCCCCCCCcCchhHHHhHHHHHhhcCCCCcch-heeeeeeecCCCCCCchHHHhhhhcceEEEEcHHHHhCCCCCcc
Confidence 47899999999999999 68999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGH 149 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~ 149 (198)
||+.|+||+| +.+++++|+++|+++|++|++|+++|+||++|+|.+++| +.|.+|++++.|++||+|+.+
T Consensus 345 Dvl~S~SR~~-~~~~~~~h~~~a~~~r~~la~y~e~e~li~~G~y~~g~d~~~d~ai~~~~~i~~fl~Q~~~-------- 415 (433)
T PRK07594 345 DVLATLSRVF-PVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD-------- 415 (433)
T ss_pred CCcccccccc-hhhCCHHHHHHHHHHHHHHHcchHHHHHHHhcCCCCCCCHHHHHHHHhhHHHHHHhCCCCC--------
Confidence 9999999999 799999999999999999999999999999999988887 889999999999999999986
Q ss_pred CCcccCHHHHHHHHHHHHh
Q psy6460 150 AGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 150 ~~~~~~l~etl~~l~~i~~ 168 (198)
+.+++++++..|.+|+.
T Consensus 416 --~~~~~~~~~~~l~~~~~ 432 (433)
T PRK07594 416 --EVCGPELLIEKLHQILT 432 (433)
T ss_pred --CCCCHHHHHHHHHHHhc
Confidence 79999999999999874
No 13
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=5e-46 Score=342.26 Aligned_cols=153 Identities=24% Similarity=0.337 Sum_probs=146.5
Q ss_pred cccCCCCccCCCCCCCC--------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 4 NASKSWFCIIGYQPDCL--------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf--------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
.++||||+++||||||| ++||| |+||||++||||++|||+|++++|+||||||||+||++|||||
T Consensus 266 l~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSI-T~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr~la~~g~yPA 344 (434)
T PRK07196 266 LSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTM-TAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPA 344 (434)
T ss_pred HhcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEe-eeeeEEEccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCc
Confidence 46899999999999999 47999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcC
Q psy6460 70 VDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTG 148 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~ 148 (198)
|||+.|+||+| +.+++++|+++|+++|++|++|+|+++|+++|+|..++| +.|.+++++++|++||+|+++
T Consensus 345 IDvl~S~SR~~-~~~~~~~~~~~a~~~r~~~a~y~e~~~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~------- 416 (434)
T PRK07196 345 IDISQSISRCM-SQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQEVG------- 416 (434)
T ss_pred cCCccccCccc-hhccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhHHHHHHHhCCCCC-------
Confidence 99999999999 699999999999999999999999999999999888777 789999999999999999987
Q ss_pred CCCcccCHHHHHHHHHHHHh
Q psy6460 149 HAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 149 ~~~~~~~l~etl~~l~~i~~ 168 (198)
+.++++++++.|.+++.
T Consensus 417 ---e~~~~~~~~~~l~~~~~ 433 (434)
T PRK07196 417 ---HPALFSASVEQLTGMFP 433 (434)
T ss_pred ---CCCCHHHHHHHHHHHhc
Confidence 79999999999999864
No 14
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=8.2e-46 Score=339.78 Aligned_cols=152 Identities=29% Similarity=0.404 Sum_probs=145.5
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.+++|||+++||||++| ++||| |+||||++||||++|||++++++|+||||+|||+||++||||
T Consensus 251 l~~gepP~~~gyp~~vf~~l~~L~ERag~~~~~~GSI-T~~~tVl~~gdd~~dpi~d~~~si~DG~ivLsr~la~~g~~P 329 (418)
T TIGR03498 251 LAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSI-TGIFTVLVDGDDHNEPVADAVRGILDGHIVLDRAIAERGRYP 329 (418)
T ss_pred HhcCCCCccccCCchhhhhhhHHHHHhccCCCCCcce-eeeEEEeccCCCCCCcchhhhheeeeeEEEECHHHHhCCCCC
Confidence 36899999999999999 36999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 69 AVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 69 AID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
||||+.|+||+| +.+++++|+++|+++|++|++|+++++++++|+|++++| +.|.+|+++++|++||+|+.+
T Consensus 330 AIDv~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~~~~~g~y~~g~d~~~d~ai~~~~~i~~fl~Q~~~------ 402 (418)
T TIGR03498 330 AINVLASVSRLA-PRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIRLVPKIYEFLTQGPD------ 402 (418)
T ss_pred ccCCcccccccc-hhhcCHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcCCCCHHHHHHHHhHHHHHHHhCCCCC------
Confidence 999999999999 799999999999999999999999999999999999887 779999999999999999986
Q ss_pred CCCCcccCHHHHHHHHHHHH
Q psy6460 148 GHAGKLVPLEETIKGFSEIL 167 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~ 167 (198)
+.++++++++.|.+|+
T Consensus 403 ----~~~~~~~~~~~l~~~~ 418 (418)
T TIGR03498 403 ----EPTSLQDPFADLAAIL 418 (418)
T ss_pred ----CCCCHHHHHHHHHhhC
Confidence 7999999999999874
No 15
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=1e-45 Score=340.65 Aligned_cols=153 Identities=26% Similarity=0.395 Sum_probs=146.6
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||||| ++||| |+||||++||||++|||+|++++|+||||+|||+||++||||||
T Consensus 274 l~~gepP~~~GYP~~vf~~l~~L~ERag~~~~GSI-T~i~tVl~~gdD~~dpI~d~~~~ilDg~ivLsr~La~~g~yPAI 352 (440)
T PRK06820 274 LAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI-TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAI 352 (440)
T ss_pred HhcCCCCccccCCccHHHHHHHHHHhhccCCCcce-eEEEEEEccCCCCCCcchhhhccccceEEEECHHHHhCCCCCcc
Confidence 36899999999999999 68999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGH 149 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~ 149 (198)
||+.|+||+| +.+++++|+++++++|++|++|+++++|+++|+|...+| +.|.++.++++|++||+|+.+
T Consensus 353 Dvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~G~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~-------- 423 (440)
T PRK06820 353 DIAASVSRIM-PQIVSAGQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQADEALQRYPAICAFLQQDHS-------- 423 (440)
T ss_pred CCcccccccc-hhhCCHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCCCHHHHHHHHhhHHHHHHhCCCCC--------
Confidence 9999999999 799999999999999999999999999999999988776 789999999999999999976
Q ss_pred CCcccCHHHHHHHHHHHHh
Q psy6460 150 AGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 150 ~~~~~~l~etl~~l~~i~~ 168 (198)
+.+++++++..+++++.
T Consensus 424 --e~~~~~~~~~~l~~~~~ 440 (440)
T PRK06820 424 --ETAHLETTLEHLAQVVG 440 (440)
T ss_pred --CCCCHHHHHHHHHHHhC
Confidence 78999999999999873
No 16
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.3e-45 Score=339.97 Aligned_cols=154 Identities=26% Similarity=0.378 Sum_probs=147.7
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.+++|||+++|||||+| ++||| |+||||++||||++|||+|++++|+||||+|||+||++||||
T Consensus 269 l~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~~~~GSI-T~i~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~La~~g~~P 347 (442)
T PRK08927 269 LSAGEPPTTKGYTPTVFAELPRLLERAGPGPIGEGTI-TGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYP 347 (442)
T ss_pred HhcCCCCcccCCCcchHHHhhHHHHHhcCCCCCCeee-eeeeeeEccCCCCCCchhhhhhccccEEEEEcHHHHhCCCCC
Confidence 36899999999999999 36999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 69 AVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 69 AID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
||||+.|+||+| +.+++++|+++++++|++|++|+++++++++|+|+.++| +.+.+++++++|++||+|+.+
T Consensus 348 AIDvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~edli~lg~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~------ 420 (442)
T PRK08927 348 AINVLKSVSRTM-PGCNDPEENPLVRRARQLMATYADMEELIRLGAYRAGSDPEVDEAIRLNPALEAFLRQGKD------ 420 (442)
T ss_pred ccCCcccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcCCCCHHHHHHHHccHHHHHhcCCCCC------
Confidence 999999999999 799999999999999999999999999999999988887 779999999999999999986
Q ss_pred CCCCcccCHHHHHHHHHHHHhC
Q psy6460 148 GHAGKLVPLEETIKGFSEILAG 169 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g 169 (198)
+.++++++++.|++++.|
T Consensus 421 ----e~~~~~~~~~~l~~l~~~ 438 (442)
T PRK08927 421 ----EATSLAEGYARLAQILGG 438 (442)
T ss_pred ----CCCCHHHHHHHHHHHhcc
Confidence 799999999999999965
No 17
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.6e-45 Score=338.99 Aligned_cols=153 Identities=29% Similarity=0.421 Sum_probs=147.4
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.++||||+++||||||| ++||| |+||||++||||++|||+|++++|+||||+|||+||++||||
T Consensus 273 l~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~~~GSI-Tai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yP 351 (444)
T PRK08972 273 LAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSI-TAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYP 351 (444)
T ss_pred HhcCCCCccccCCchHHHHhHHHHHHhcCCCCCCcee-eeEEEEEEeCCCCCcchHHhhhhhcceEEEEcHHHHhCCCCC
Confidence 47899999999999999 26999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 69 AVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 69 AID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
||||+.|+||+| +.+++++|+++|+++|++|++|+++++|+++|+|..++| +.|.+|++++.|++||+|+.+
T Consensus 352 AIDvl~S~SR~~-~~i~~~~h~~~a~~~r~~ls~y~~~e~li~~g~y~~g~d~~~d~ai~~~~~i~~fl~Q~~~------ 424 (444)
T PRK08972 352 AIDIEASISRVM-PMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYKQGSDPRIDNAIRLQPAMNAFLQQTMK------ 424 (444)
T ss_pred eeCCccccccCc-hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHhhHHHHHHhCCCCC------
Confidence 999999999999 799999999999999999999999999999999998887 899999999999999999986
Q ss_pred CCCCcccCHHHHHHHHHHHHh
Q psy6460 148 GHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~ 168 (198)
+.+++++++..|.+|+.
T Consensus 425 ----~~~~~~~~~~~l~~~~~ 441 (444)
T PRK08972 425 ----EAVPYDMSVNMLKQLAA 441 (444)
T ss_pred ----CCCCHHHHHHHHHHHHh
Confidence 79999999999999975
No 18
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2.6e-45 Score=338.22 Aligned_cols=152 Identities=24% Similarity=0.358 Sum_probs=145.9
Q ss_pred ccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460 5 ASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 71 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID 71 (198)
++||||+++||||||| ++||| |+||||+++|||++|||+|++++|+||||+|||+||++|||||||
T Consensus 275 ~~gepP~~~gyP~~vf~~l~~l~ERag~~~~GSI-T~i~tVl~~~dd~~dpI~d~~~~i~DG~ivLsr~La~~g~yPAID 353 (441)
T PRK09099 275 AAGEPPARRGFPPSVFAELPRLLERAGMGETGSI-TALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAID 353 (441)
T ss_pred hcCCCCccccCCccHHHHhHHHHHhhcCCCCcch-heeEEEEecCCCcCCcchhhhheecceEEEEcHHHHhCCCCCccC
Confidence 6899999999999999 58999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460 72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGHA 150 (198)
Q Consensus 72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~ 150 (198)
|+.|+||+| +.+++++|+++++++|++|++|+++++++++|+|+.++| ..+.+++++++|++||+|+.+
T Consensus 354 vl~S~SR~~-~~~~~~~~~~~a~~lr~~la~y~e~e~li~iG~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~--------- 423 (441)
T PRK09099 354 VLGSLSRVM-PQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVADEAIAKIDAIRDFLSQRTD--------- 423 (441)
T ss_pred CccccCccc-hhcCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCccCCCChhHHHHHHHHHHHHHHhCCCCC---------
Confidence 999999999 799999999999999999999999999999998888776 678899999999999999986
Q ss_pred CcccCHHHHHHHHHHHHh
Q psy6460 151 GKLVPLEETIKGFSEILA 168 (198)
Q Consensus 151 ~~~~~l~etl~~l~~i~~ 168 (198)
+.+++++++..|.+|+.
T Consensus 424 -~~~~~~~t~~~l~~~~~ 440 (441)
T PRK09099 424 -EYSDPDATLAALAELSG 440 (441)
T ss_pred -CCCCHHHHHHHHHHHhc
Confidence 79999999999999974
No 19
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=2.4e-45 Score=337.22 Aligned_cols=152 Identities=22% Similarity=0.324 Sum_probs=145.3
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||+|| .+||| |+||||++||||++|||+|++++|+||||+|||+||++||||||
T Consensus 262 l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~~GSI-T~~~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr~La~~g~yPAI 340 (428)
T PRK08149 262 LAAGELPARRGYPASVFDSLPRLLERPGATLAGSI-TAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAI 340 (428)
T ss_pred hhcCCCCcccccCccHHHHHHHHHHhccCCCCCCc-eEEEEEEecCCCCCCCchhhhheeccEEEEEcHHHHhCCCCCcc
Confidence 36899999999999999 57999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGH 149 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~ 149 (198)
||+.|+||+| +.+++++|+++|+++|++|++|+++++|+++|+|..++| +.|.+|.++++|++||+|+++
T Consensus 341 Dvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~~g~~~~~d~ai~~~~~i~~fl~Q~~~-------- 411 (428)
T PRK08149 341 DVLKSVSRVF-GQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGEYRRGENADNDRAMDKRPALEAFLKQDVA-------- 411 (428)
T ss_pred cCccccccch-hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhHHHHHHHhCCCCC--------
Confidence 9999999999 699999999999999999999999999999999877666 788999999999999999987
Q ss_pred CCcccCHHHHHHHHHHHH
Q psy6460 150 AGKLVPLEETIKGFSEIL 167 (198)
Q Consensus 150 ~~~~~~l~etl~~l~~i~ 167 (198)
+.+++++++..|.+++
T Consensus 412 --~~~~~~~~~~~l~~~~ 427 (428)
T PRK08149 412 --EKSSFSDTLERLNEFA 427 (428)
T ss_pred --CCCCHHHHHHHHHHHh
Confidence 7999999999999886
No 20
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=4.3e-45 Score=339.93 Aligned_cols=161 Identities=20% Similarity=0.206 Sum_probs=153.7
Q ss_pred ccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCC
Q psy6460 5 ASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 67 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~y 67 (198)
+++|||+++||||||| ++||| |+||+|++++||++||||+++++|+||||+|||+||++|||
T Consensus 276 ~lgepPgr~gYPg~vF~~~srLlERag~~~~~~~~GSI-Tal~~V~~~~dD~s~pI~d~v~sItDGqIvLsr~La~~G~~ 354 (497)
T TIGR03324 276 LLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSL-TALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVL 354 (497)
T ss_pred hccCCCccCcCCccHHHHhHHHHHhhhhccCCCCCcce-eEEEEEEcCCCCCCCcchHhheeccceEEEEcHHHHhCCCC
Confidence 6899999999999999 25999 99999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 68 PAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 68 PAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
|||||+.|+||+| +.++.++|+++|+++|.+|++|+|+++++++|.+ ++++++.+|+++++|++||+|+++
T Consensus 355 PAIDv~~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~e~e~~~~~G~~--ld~~~~~~i~~~~~i~~fL~Q~~~------ 425 (497)
T TIGR03324 355 PAVDVGKSVSRVG-GKAQLAAYRAVAGDLKLAYAQFEELETFARFGAR--LDENTRKTIEHGRRIRACLKQTQS------ 425 (497)
T ss_pred CcCCCccccccCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCHHHHHHHHhHHHHHHHhCCCCC------
Confidence 9999999999999 6999999999999999999999999999999854 778999999999999999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 148 GHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+++++++++..|+++..|.+|++|++..
T Consensus 426 ----~~~~~~~~~~~l~~~~~g~~d~~~~~~v 453 (497)
T TIGR03324 426 ----SPLTVPQQIAILLALTNGLFDGVDLDAM 453 (497)
T ss_pred ----CCCCHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 7899999999999999999999998654
No 21
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=4.6e-45 Score=334.48 Aligned_cols=152 Identities=30% Similarity=0.409 Sum_probs=146.2
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++|||||+| ++||| |+||||++||||++|||++++++|+||||+|||+||++||||||
T Consensus 248 l~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GSI-T~~~tVl~~gdD~~dpi~~~~~si~dg~ivLsr~la~~g~~PAI 326 (413)
T TIGR03497 248 LAVGEPPTTRGYTPSVFSLLPKLLERSGNSQKGSI-TGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAI 326 (413)
T ss_pred HhcCCCCCCCCcCchHHHHhHHHHHHhcCCCCcce-eEEEEEEccCCCCCCcchhhccccccEEEEECHHHHhCCCCCcc
Confidence 46899999999999999 68999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGH 149 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~ 149 (198)
||+.|+||+| +.+++++|+++|+++|++|++|+++++++++|+|+.++| +++.++++++.|++||+|+.+
T Consensus 327 d~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~~~~g~d~~~~~~i~~~~~i~~fl~Q~~~-------- 397 (413)
T TIGR03497 327 DVLASVSRVM-NEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSFLKQGID-------- 397 (413)
T ss_pred CCccccccCc-cccCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHhCCCCC--------
Confidence 9999999999 799999999999999999999999999999999998887 699999999999999999987
Q ss_pred CCcccCHHHHHHHHHHHH
Q psy6460 150 AGKLVPLEETIKGFSEIL 167 (198)
Q Consensus 150 ~~~~~~l~etl~~l~~i~ 167 (198)
+.+++++++..|.+++
T Consensus 398 --~~~~~~~~~~~l~~~~ 413 (413)
T TIGR03497 398 --EKFTFEETVQLLKTLF 413 (413)
T ss_pred --CCCCHHHHHHHHHhhC
Confidence 7999999999998874
No 22
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=6.2e-45 Score=339.59 Aligned_cols=161 Identities=19% Similarity=0.183 Sum_probs=154.1
Q ss_pred ccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCC
Q psy6460 5 ASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 67 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~y 67 (198)
+++|||+++||||+|| ++||| |+||+|+++|||+++||++++++|+||||+|||+||++|||
T Consensus 276 ~l~epPgr~gYP~~vf~~~srLlERAg~~~~~~~gGSI-Tal~~V~~~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~ 354 (502)
T PRK13343 276 LLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSL-TALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQR 354 (502)
T ss_pred hcCCCCCcCCcCcchHhhhHHHHHhhccCCCCCCCcce-EEEEEEEcCCCCCCCcchhhhhcccceEEEECHHHHhCCCC
Confidence 6899999999999999 35999 99999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 68 PAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 68 PAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
|||||+.|+||+| +.++.++|+++|+++|.+|++|+|+++++++|++ ++++.+.+|+++++|++||+|+++
T Consensus 355 PAIDv~~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~e~e~~~~~G~~--ld~~~~~~i~~~~~i~~~L~Q~~~------ 425 (502)
T PRK13343 355 PAVDVGLSVSRVG-GKAQHPAIRKESGRLRLDYAQFLELEAFTRFGGL--LDAGTQKQITRGRRLRELLKQPRF------ 425 (502)
T ss_pred CccCCccchhccC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCHHHHHHHHHHHHHHHHhcCCCC------
Confidence 9999999999999 6999999999999999999999999999999976 777899999999999999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 148 GHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+.+++++++..|+++..|.+|++|.+..
T Consensus 426 ----~~~~~~~~~~~l~~~~~g~~~~~~~~~i 453 (502)
T PRK13343 426 ----SPLSVEEQIALLYALNEGLLDAVPLANI 453 (502)
T ss_pred ----CCCCHHHHHHHHHHHhcCCccCCCHHHH
Confidence 6899999999999999999999998764
No 23
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=4.3e-45 Score=335.53 Aligned_cols=153 Identities=31% Similarity=0.446 Sum_probs=146.1
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||+|| ++||| |+||||+++|||++|||+|++++|+||||+|||+||++||||||
T Consensus 256 l~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GSI-T~~~tv~~~~dd~~~pi~~~~~~i~dg~i~Lsr~la~~g~yPAI 334 (422)
T TIGR02546 256 LAAGEPPARGGYPPSVFSSLPRLLERAGNGEKGSI-TALYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAI 334 (422)
T ss_pred HhcCCCCcccccChhHHHHhHHHHHHhcCCCCCce-eEEEEEeccCCCCCCCchhhhhccccEEEEEcHHHHhCCCCCcc
Confidence 37899999999999999 68999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGH 149 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~ 149 (198)
||+.|+||+| +.+++++|+++++++|++|++|+|+++++++|+|+.++| +.|.++.++++|++||+|+++
T Consensus 335 d~~~S~SR~~-~~~~~~~~~~~a~~~~~~l~~y~e~~~li~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~-------- 405 (422)
T TIGR02546 335 DVLASLSRVM-SQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETDDAIDKIDAIRAFLRQSTD-------- 405 (422)
T ss_pred CCccccccch-hhhCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCCcCCCCHHHHHHHHhHHHHHHHhCCCCC--------
Confidence 9999999999 799999999999999999999999999999999887776 778999999999999999986
Q ss_pred CCcccCHHHHHHHHHHHHh
Q psy6460 150 AGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 150 ~~~~~~l~etl~~l~~i~~ 168 (198)
+++++++++..|+++++
T Consensus 406 --~~~~~~~~~~~l~~~~~ 422 (422)
T TIGR02546 406 --EYSPYEETLEQLHALVA 422 (422)
T ss_pred --CCCCHHHHHHHHHHHhC
Confidence 79999999999999863
No 24
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.3e-44 Score=333.76 Aligned_cols=153 Identities=27% Similarity=0.371 Sum_probs=146.2
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.++||||+++|||||+| ++||| |+||||++|||||+|||+|++++|+||||+|||+||++||||
T Consensus 286 l~~ge~P~~~gypp~~f~~l~~l~ERag~~~~~~GSI-T~i~tVlv~~dD~~dpi~d~~~~i~dg~ivLsr~la~~g~yP 364 (455)
T PRK07960 286 LAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSI-TAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP 364 (455)
T ss_pred HhcCCCCccccCCcchhhhhhHHHHHHhcCCCCCeee-eeEEEEEEcCCCCCcchHHHhhhhcceEEEECHHHHhCCCCC
Confidence 36899999999999999 36999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 69 AVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 69 AID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
||||+.|+||+| +.+++++|++.+.++|++|+.|+++++||++|+|..++| ..|+++.+.++|++||+|+++
T Consensus 365 AID~l~S~SR~~-~~~~~~~~~~~~~~~r~~l~~Y~~~~dli~ig~y~~G~d~~~D~ai~~~~~i~~fl~Q~~~------ 437 (455)
T PRK07960 365 AIDIEASISRAM-TALIDEQHYARVRQFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEAFLQQGIF------ 437 (455)
T ss_pred ccCcCcccCcCc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHHhHHHHHHHhCCCCC------
Confidence 999999999999 699999999999999999999999999999999988887 789999999999999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHh
Q psy6460 148 GHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~ 168 (198)
+.+++++++..|.+|+.
T Consensus 438 ----e~~~~~~~~~~l~~~~~ 454 (455)
T PRK07960 438 ----ERADWEDSLQALERIFP 454 (455)
T ss_pred ----CCcCHHHHHHHHHHhhc
Confidence 78999999999999863
No 25
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.2e-44 Score=334.07 Aligned_cols=155 Identities=27% Similarity=0.342 Sum_probs=148.0
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.+++|||+++||||||| ++||| |+||||++||||++|||++++++|+||||+|||+||++||||
T Consensus 275 l~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSI-T~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLsr~la~~g~~P 353 (450)
T PRK06002 275 LAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSI-TGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYP 353 (450)
T ss_pred HhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeee-eEEEEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCC
Confidence 36899999999999999 37999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 69 AVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 69 AID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
||||+.|+||+| +.+++++|+++|+++|++|++|+|+++||++|+|+.++| +.|.+++++++|++||+|+.+
T Consensus 354 AIDv~~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~e~e~li~ig~y~~G~d~~~D~ai~~~~~i~~fL~Q~~~------ 426 (450)
T PRK06002 354 AVDPLASISRLA-RHAWTPEQRKLVSRLKSMIARFEETRDLRLIGGYRAGSDPDLDQAVDLVPRIYEALRQSPG------ 426 (450)
T ss_pred ccCCccccCccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCChHHHHHHHhHHHHHHHhCCCCC------
Confidence 999999999999 699999999999999999999999999999999999998 779999999999999999986
Q ss_pred CCCCcccCHHHHHHHHHHHHhCcC
Q psy6460 148 GHAGKLVPLEETIKGFSEILAGKY 171 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g~~ 171 (198)
+.++ ++++..|.+|+.|..
T Consensus 427 ----~~~~-~~~~~~l~~~~~~~~ 445 (450)
T PRK06002 427 ----DPPS-DDAFADLAAALKGAA 445 (450)
T ss_pred ----CCCC-HHHHHHHHHHHhhHh
Confidence 6888 999999999998754
No 26
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=2.1e-44 Score=336.56 Aligned_cols=161 Identities=20% Similarity=0.215 Sum_probs=153.8
Q ss_pred ccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCC
Q psy6460 5 ASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 67 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~y 67 (198)
+++|||+++||||||| ++||| |+||+|++|+||++||||+++++|+||||+|||+||++|||
T Consensus 276 ~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~~~GSI-Tal~~V~~~~dD~s~pI~d~~~sItDGqIvLsr~La~~G~~ 354 (502)
T PRK09281 276 LLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSL-TALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIR 354 (502)
T ss_pred hcCCCCCCCCcCccHHHHhHHHHHHhhhccCCCCCccE-EEEEEEECCCCCCCCcchHhhhcccceEEEEcHHHHhCCCC
Confidence 6899999999999999 35999 99999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 68 PAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 68 PAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
|||||+.|+||+| +.++.++|+++|+++|.+|++|+|+++++++| ..++++++.+++++++|++||+|+++
T Consensus 355 PAIdv~~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~e~~~l~~~g--~~l~~~~~~~l~~~~~i~~fL~Q~~~------ 425 (502)
T PRK09281 355 PAINVGISVSRVG-GAAQIKAMKKVAGTLRLDLAQYRELEAFAQFG--SDLDEATRAQLERGQRLVELLKQPQY------ 425 (502)
T ss_pred CccCCcccccccC-CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhCCCCC------
Confidence 9999999999999 68999999999999999999999999999997 46788999999999999999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 148 GHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+..++++++..++.+..|.+|.+|.++.
T Consensus 426 ----~~~~~~~~~~~~~~~~~G~l~~l~~~~i 453 (502)
T PRK09281 426 ----SPLPVEEQVVILYAGTNGYLDDVPVEKV 453 (502)
T ss_pred ----CCCCHHHHHHHHHHHhcCccccCCHHHH
Confidence 6889999999999999999999998765
No 27
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.2e-44 Score=331.51 Aligned_cols=148 Identities=33% Similarity=0.475 Sum_probs=140.2
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.++||||+++||||++| ++||| |+||||++||||++|||++++++|+||||+|||+||++||||
T Consensus 248 l~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSI-T~~~tv~~~~dd~~dpi~~~~~~i~dg~ivLsr~la~~g~~P 326 (411)
T TIGR03496 248 LAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSI-TAFYTVLVEGDDQQDPIADAARAILDGHIVLSRELAEQGHYP 326 (411)
T ss_pred HhcCCCCCccCcCHHHHHHhHHHHHHhcccCCCCcce-eEEEEEEccCCCCCCcchhhhcccccEEEEEchhHHhCCCCC
Confidence 36899999999999999 36999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 69 AVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 69 AID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
||||+.|+||++ +.+++++|+++++++|++|++|+|+++++++|+|+.++| +.|.+|+++++|++||+|+++
T Consensus 327 AId~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~------ 399 (411)
T TIGR03496 327 AIDILASISRVM-PDVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQAIALYPRIEAFLQQGMR------ 399 (411)
T ss_pred ccCCCcccccch-hhhCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCC------
Confidence 999999999999 799999999999999999999999999999999987766 668899999999999999987
Q ss_pred CCCCcccCHHHHHHHH
Q psy6460 148 GHAGKLVPLEETIKGF 163 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l 163 (198)
+.+++++++..|
T Consensus 400 ----~~~~~~~~~~~l 411 (411)
T TIGR03496 400 ----ERASFEESLEAL 411 (411)
T ss_pred ----CCCCHHHHHhhC
Confidence 789999998764
No 28
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=2.1e-44 Score=338.93 Aligned_cols=157 Identities=24% Similarity=0.319 Sum_probs=145.8
Q ss_pred cccCCCCccCCCCCCCC--------------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHh
Q psy6460 4 NASKSWFCIIGYQPDCL--------------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAE 63 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf--------------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~ 63 (198)
.++||||+++||||||| ++||| |+||||++||||++|||+++|++|+||||+|||+||+
T Consensus 346 l~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSI-T~i~aVs~~ggD~sePVt~~t~~i~~~f~~Ldr~LA~ 424 (591)
T TIGR01042 346 GRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSV-SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQ 424 (591)
T ss_pred hccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccE-EEEEEEECCCCCCCCchHHHHHHHhcceeeeCHHHHh
Confidence 47999999999999999 25999 9999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCCCCCCCCCCC------CHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHh
Q psy6460 64 LGIYPAVDPLDSTSRIMDPNII------GAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFL 136 (198)
Q Consensus 64 ~g~yPAID~l~S~SR~~~~~i~------~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL 136 (198)
+||||||||+.|+||+| +.+. +++|.+++++++++|++|+++++|+++||++++++.|+.++.+++.+. +||
T Consensus 425 ~ghyPAId~l~S~Sr~~-~~l~~~~~~~~~~~~~~~~~~~~lL~~~~el~eiv~l~g~~~l~~~d~~i~~~a~~i~e~FL 503 (591)
T TIGR01042 425 RKHFPSVNWLISYSKYM-RALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQLVGKDALAETDKITLEVAKLIKEDFL 503 (591)
T ss_pred CCCCCCcCCchhhhhhh-hhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999 6777 899999999999999999999999999999999988888888888885 999
Q ss_pred cCCCccchhhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 137 SQPFQVAEVFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 137 ~Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
+|+++. ..+++|++++++.+|..|+.
T Consensus 504 qQ~a~~------~~d~~~~~~kt~~~L~~i~~ 529 (591)
T TIGR01042 504 QQNGYT------PYDRFCPFYKTVGMMRNMIA 529 (591)
T ss_pred CCCCCC------CccccCCHHHHHHHHHHHHH
Confidence 999553 45678899999999988875
No 29
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=3.4e-44 Score=337.99 Aligned_cols=157 Identities=22% Similarity=0.282 Sum_probs=145.6
Q ss_pred cccCCCCccCCCCCCCC--------------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHh
Q psy6460 4 NASKSWFCIIGYQPDCL--------------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAE 63 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf--------------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~ 63 (198)
.++||||+++||||||| ++||| |+||||++|||||+|||+++|++|+||||+|||+||+
T Consensus 340 ~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSI-T~i~aVs~~ggD~sdPVt~~t~~i~dg~i~Ldr~LA~ 418 (578)
T TIGR01043 340 GRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSV-TVIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADLAQ 418 (578)
T ss_pred HhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccE-eEEEEEECCCCCCCccHHHHHHHHhCcEEEeCHHHHh
Confidence 37999999999999999 15999 9999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCCCCCCCCCC-------CCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HH
Q psy6460 64 LGIYPAVDPLDSTSRIMDPNI-------IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RF 135 (198)
Q Consensus 64 ~g~yPAID~l~S~SR~~~~~i-------~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~f 135 (198)
+||||||||+.|+||+| +.+ ++++|..++++++++|++|+|+++|+++.|.|++++.|+..+++++.++ .|
T Consensus 419 ~ghyPAId~l~S~Sr~~-~~~~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~iv~lvG~d~L~~~d~~il~~a~~i~e~F 497 (578)
T TIGR01043 419 RRHFPAINWLQSYSLYV-DLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQLVGPDALPERQKLILEVARMIREAF 497 (578)
T ss_pred cCCCCCcCcccchhhhc-cccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhHHHHHhh
Confidence 99999999999999999 576 8999999999999999999999999999999999999999999999995 99
Q ss_pred hcCCCccchhhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 136 LSQPFQVAEVFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 136 L~Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
|+|+.+. +.+.+|++++++..|..|+.
T Consensus 498 LqQ~~~~------~~d~~~~~~k~~~~L~~i~~ 524 (578)
T TIGR01043 498 LQQNAFD------PVDTYCPPQKQYRILRAIMN 524 (578)
T ss_pred CCCCCCC------CccCCCCHHHHHHHHHHHHH
Confidence 9999542 44577799999999888875
No 30
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=8.3e-44 Score=329.53 Aligned_cols=160 Identities=29% Similarity=0.389 Sum_probs=147.4
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.+++|||+++||||||| ++||| |+||||++||||++|||+|++++||||||+|||+||++||||
T Consensus 259 l~~gepP~~~GYP~svfs~l~~LlERaG~~~~~~GSI-Tai~tV~~~gdD~~dPI~d~~~sIlDGhivLsr~La~~G~yP 337 (458)
T TIGR01041 259 AAREEVPGRRGYPGYMYTDLATIYERAGRVKGKKGSI-TQMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGIYP 337 (458)
T ss_pred HhcCCCCCCCCcCccHHHHhHHHHHhcccCCCCCcce-EEEEEEEcCCCCCCCchHHhhhhhcceEEEEcHHHHhCCCCC
Confidence 37899999999999999 36999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHH-HHHhcCCCcc
Q psy6460 69 AVDPLDSTSRIMDPN-----IIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKI-QRFLSQPFQV 142 (198)
Q Consensus 69 AID~l~S~SR~~~~~-----i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i-~~fL~Q~~~~ 142 (198)
||||+.|+||+| +. +++++|++++++++..|+++++++++.++.|.++++|++...+.++++| ++||+|+++
T Consensus 338 AIDvl~SvSR~~-~~~ig~~~~~~~~~~~a~~l~~~y~~~~~L~~i~~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~- 415 (458)
T TIGR01041 338 PINVLPSLSRLM-KDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIVGEEALSERDRKYLKFADLFERRFVRQGRN- 415 (458)
T ss_pred ccCCccchhhcc-cccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHhcCCCCC-
Confidence 999999999999 45 7889999999988888888888888888878899999999999999995 799999986
Q ss_pred chhhcCCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 143 AEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 143 ~d~ft~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+.+++++++..|++++. .+|++.+
T Consensus 416 ---------~~~~~~~~~~~l~~~l~----~~~~~~~ 439 (458)
T TIGR01041 416 ---------ENRSIEETLDIGWELLS----ILPESEL 439 (458)
T ss_pred ---------CCCCHHHHHHHHHHHHh----hCCHHHH
Confidence 79999999999999985 6777665
No 31
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=1.4e-43 Score=330.98 Aligned_cols=160 Identities=21% Similarity=0.233 Sum_probs=152.7
Q ss_pred ccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCC
Q psy6460 5 ASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 67 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~y 67 (198)
+++|||+++||||+|| ++||| |+||+|+++|||++||||+++++||||||+|||+||++|||
T Consensus 275 ~lgepP~~~gYP~~vf~~~srLlERag~~~~~~g~GSI-Tal~~V~~~~dD~s~pI~~~~~sItDGqIvLsr~La~~G~~ 353 (501)
T TIGR00962 275 LLRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSL-TALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIR 353 (501)
T ss_pred hcCCCCcccCcCchHHHHHHHHHHHHhhccCCCCCcce-EEEEEEECCCCCCCCcchHhhhhhcceEEEEcHhHHhCCCC
Confidence 6899999999999999 26999 99999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 68 PAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 68 PAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
|||||+.|+||+| +.++.++|+++|+++|.+|++|+|+++++++| ..++++++.+|+++++|++||+|+.+
T Consensus 354 PAIdv~~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~e~~~l~~~g--~~ld~~~~~~l~~~~~i~~fL~Q~~~------ 424 (501)
T TIGR00962 354 PAINVGLSVSRVG-GAAQIKAMKQVAGSLRLELAQYRELEAFSQFA--SDLDEATKAQLERGKRLVELLKQPQY------ 424 (501)
T ss_pred CccCCccchhccC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHhcCCCC------
Confidence 9999999999999 69999999999999999999999999999997 45778999999999999999999986
Q ss_pred CCCCcccCHHHHHHHHHHHHhCcCCCCccch
Q psy6460 148 GHAGKLVPLEETIKGFSEILAGKYDHLPEVA 178 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~ 178 (198)
+++++++++..++.+..|.+|++|.+.
T Consensus 425 ----~~~~~~~q~~~l~a~~~G~l~~v~~~~ 451 (501)
T TIGR00962 425 ----KPLPVEEQVVILYAGTKGYLDDIPVDK 451 (501)
T ss_pred ----CCcCHHHHHHHHHHHhcCCcccccHHH
Confidence 689999999999999999999999875
No 32
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.4e-43 Score=326.74 Aligned_cols=151 Identities=28% Similarity=0.402 Sum_probs=146.3
Q ss_pred ccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460 5 ASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 71 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID 71 (198)
++++||+++||||++| ++||| |+||||+++|||++|||+|++++|+||||+|||+||++|||||||
T Consensus 277 ~~gepp~~~gypP~~fS~l~~llERag~~~~GSI-Tai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~la~~g~~Paid 355 (442)
T PRK06315 277 AAGEPPARAGYTPSVFSTLPKLLERSGASDKGTI-TAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAID 355 (442)
T ss_pred CCCCCccccCCCCchhhHhHHHHHHhcCCCCcce-eeeEEEEecCCCCCcccHHHhhhhcceEEEEeccHHHcCCCCCcc
Confidence 4689999999999999 68999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460 72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGHA 150 (198)
Q Consensus 72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~ 150 (198)
|+.|+||+| +.+++++|+++++++|++|++|+++++++++|+|.+++| +.|.+|+++++|++||+|+++
T Consensus 356 v~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~--------- 425 (442)
T PRK06315 356 VLASISRLL-TAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIH--------- 425 (442)
T ss_pred chhhhcccc-hhcCCHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCC---------
Confidence 999999999 799999999999999999999999999999999999998 899999999999999999987
Q ss_pred CcccCHHHHHHHHHHHH
Q psy6460 151 GKLVPLEETIKGFSEIL 167 (198)
Q Consensus 151 ~~~~~l~etl~~l~~i~ 167 (198)
+.+++++++..|.+|+
T Consensus 426 -e~~~~~~~~~~l~~~~ 441 (442)
T PRK06315 426 -EKTNYEEAAQQLRAIF 441 (442)
T ss_pred -CCCCHHHHHHHHHHHh
Confidence 7999999999999886
No 33
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.8e-43 Score=327.61 Aligned_cols=171 Identities=32% Similarity=0.413 Sum_probs=154.2
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.+++|||+++||||||| ++||| |+||||+++|||++|||++++++||||||+|||+||++||||
T Consensus 261 l~~gepP~~~gYP~~vf~~l~~LlERaG~~~~~~GSI-Tai~~V~~~gdD~~dpI~d~~~sI~DG~ivLsr~La~~g~~P 339 (460)
T PRK04196 261 AAREEVPGRRGYPGYMYTDLATIYERAGRIKGKKGSI-TQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGIYP 339 (460)
T ss_pred HhcCCCCCCCCcCccHHHHhHHHHHHhhcCCCCCeee-EEEEEEEcCCCCCCCchhhhhhhhcceEEEEcHHHHhCCCCC
Confidence 37899999999999999 36999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHhcCCCcc
Q psy6460 69 AVDPLDSTSRIMDPNIIG-----AEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQPFQV 142 (198)
Q Consensus 69 AID~l~S~SR~~~~~i~~-----~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL~Q~~~~ 142 (198)
||||+.|+||+| +.+++ ++|++++++++..|++|++++++.++.|.++++|++...+.++++++ +||+|+++
T Consensus 340 AIDvl~SvSR~~-~~~~~~~~~~~~~~~~a~~l~~~y~~~~~l~~~~~~~G~~~l~d~~~~~~~~~~~~~~~fL~Q~~~- 417 (460)
T PRK04196 340 PIDVLPSLSRLM-KDGIGEGKTREDHKDVANQLYAAYARGKDLRELAAIVGEEALSERDRKYLKFADAFEREFVNQGFD- 417 (460)
T ss_pred ccCCccchhhhc-cccCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHcCCCCC-
Confidence 999999999999 67888 99999999999999999999988888888999999999999999985 99999987
Q ss_pred chhhcCCCCcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHH
Q psy6460 143 AEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKA 192 (198)
Q Consensus 143 ~d~ft~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~ 192 (198)
+.+++++++..++++++ .+|+....++ -.++++|+
T Consensus 418 ---------~~~~~~~~~~~l~~~l~----~~~~~~l~~~--~~~l~~~~ 452 (460)
T PRK04196 418 ---------ENRSIEETLDLGWELLS----ILPESELKRI--KDEYIEKY 452 (460)
T ss_pred ---------CCcCHHHHHHHHHHHHh----hCCHHHHHHH--HHHHHHHh
Confidence 79999999999999984 6777776544 23445544
No 34
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.7e-43 Score=333.76 Aligned_cols=157 Identities=24% Similarity=0.317 Sum_probs=143.3
Q ss_pred cccCCCCccCCCCCCCC------------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcC
Q psy6460 4 NASKSWFCIIGYQPDCL------------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELG 65 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf------------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g 65 (198)
.++||||+++||||||| .+||| |+||+|++|||||+|||+++|++|+||||+|||+||++|
T Consensus 345 ~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~~~~GSI-T~i~aVs~pggD~sePVt~~t~~i~dg~i~Ldr~LA~~g 423 (586)
T PRK04192 345 GRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSV-TIIGAVSPPGGDFSEPVTQNTLRIVKVFWALDAELADRR 423 (586)
T ss_pred HhcCCCCccCCcCccHHHHHHHHHHhhcccccCCCCCcce-EEEEEEECCCCCCCcchHHHHHHHhCceEEEcHHHHhCC
Confidence 47999999999999999 26999 999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCC-------CCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHhc
Q psy6460 66 IYPAVDPLDSTSRIMDPNI-------IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLS 137 (198)
Q Consensus 66 ~yPAID~l~S~SR~~~~~i-------~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL~ 137 (198)
|||||||+.|+||+++ .+ ++++|.+++++++++|++|+++++++++.|.++|++++++.++++++|+ .||+
T Consensus 424 hyPAId~l~S~Sr~~~-~~~~~~~~~v~~~~~~~~~~~~~~L~~~~el~eiv~lvG~d~Ls~~d~~~l~~a~~i~~~fL~ 502 (586)
T PRK04192 424 HFPAINWLTSYSLYLD-QVAPWWEENVDPDWRELRDEAMDLLQREAELQEIVRLVGPDALPEEDRLILEVARLIREDFLQ 502 (586)
T ss_pred cCCccCCccchhhhhh-cccchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999994 54 4599999999999999999999999999999999999999999999997 8999
Q ss_pred CCCccchhhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 138 QPFQVAEVFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 138 Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
|++++ ..+.+|++++++..|..|+.
T Consensus 503 Q~~f~------~~d~~~~l~k~~~~l~~i~~ 527 (586)
T PRK04192 503 QNAFD------PVDTYCPPEKQYEMLKLILT 527 (586)
T ss_pred CCCCC------CccccccHHHHHHHHHHHHH
Confidence 99543 33456688877777777764
No 35
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=3.7e-43 Score=326.04 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=153.0
Q ss_pred cccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCC
Q psy6460 4 NASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 66 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~ 66 (198)
.+++|||+++||||+|| ++||| |+||+|++++||+++|||+++++|+||||+|||+||++||
T Consensus 254 l~l~epPgr~gYP~~vF~~~srLlERag~~~~~~~~GSI-Tal~~V~~~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~ 332 (485)
T CHL00059 254 LLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSM-TALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGI 332 (485)
T ss_pred HhcCCCCCcCCcCchHHHHhHHHHHhhhcccCCCCCcce-EEEEEEEccCCCCCCcchHhhhhhcceEEEEcHHHHhCCC
Confidence 36899999999999999 27999 9999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhh
Q psy6460 67 YPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVF 146 (198)
Q Consensus 67 yPAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~f 146 (198)
||||||+.|+||+| +.+++++|+++|.++|.+|++|+|++++++++ ..++++.+.+|+++++|++||+|+.+
T Consensus 333 ~PAIDv~~SvSRvg-~~aq~~~~~~~a~~lr~~la~y~e~e~~~~~~--~~~d~~~~~~i~~~~~i~~~L~Q~~~----- 404 (485)
T CHL00059 333 RPAINVGISVSRVG-SAAQIKAMKQVAGKLKLELAQFAELEAFAQFA--SDLDKATQNQLARGQRLRELLKQSQS----- 404 (485)
T ss_pred CCCcCcccchhcCC-chhhcHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCHHHHHHHHhHHHHHHHhcCCCC-----
Confidence 99999999999999 79999999999999999999999999999995 35666889999999999999999986
Q ss_pred cCCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 147 TGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 147 t~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+++++++++-.++.+..|.+|++|.+..
T Consensus 405 -----~~~~~~e~~~~l~a~~~g~l~~~~~~~v 432 (485)
T CHL00059 405 -----APLTVEEQVATIYTGTNGYLDSLEIGQV 432 (485)
T ss_pred -----CCCCHHHHHHHHHHhccCCcCccCHHHH
Confidence 7899999999999999999999998644
No 36
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=2.4e-42 Score=318.88 Aligned_cols=171 Identities=22% Similarity=0.290 Sum_probs=147.1
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.+++|||+++||||||| ++||| |+||||++||||++|||+|++++||||||||||+||++||||
T Consensus 268 l~~gepP~~~GYP~svfs~l~~L~ERaG~~~~~~GSI-Tai~tV~~~~dD~~~pI~d~~~sIlDGhIvLsr~La~~g~yP 346 (466)
T TIGR01040 268 AAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSI-TQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYP 346 (466)
T ss_pred HhcCCCCCCcCcCchHHHHHHHHhhccccCCCCCcce-EEEEEEECCCCCCCCcchhhhhhhcceEEEECHHHHhCCCCC
Confidence 36899999999999999 25999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHH-HHHhcCCCcc
Q psy6460 69 AVDPLDSTSRIMDPNIIG-----AEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKI-QRFLSQPFQV 142 (198)
Q Consensus 69 AID~l~S~SR~~~~~i~~-----~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i-~~fL~Q~~~~ 142 (198)
||||+.|+||+| +.+++ ++|+++++++..+|++++++.++....|.|+++|++...+.+++.| +.||+|+++
T Consensus 347 AIDvl~SvSRl~-~~v~~~~~~~~~h~~~a~~l~~~y~~~~~L~~ig~y~G~d~l~d~a~~~l~~~~~i~~~FL~Q~~~- 424 (466)
T TIGR01040 347 PINVLPSLSRLM-KSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFIAQGPY- 424 (466)
T ss_pred ccCCccchhhcc-ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHhccCcC-
Confidence 999999999999 68888 8999999985444444444444444448999999888899999999 699999986
Q ss_pred chhhcCCCCcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHH
Q psy6460 143 AEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKA 192 (198)
Q Consensus 143 ~d~ft~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~ 192 (198)
+.+++++++..-|+++. .+|.+.+.++- +++++|+
T Consensus 425 ---------~~~~~~~~l~~~w~ll~----~~~~~~~~r~~--~~~~~~~ 459 (466)
T TIGR01040 425 ---------ENRTIFESLDIAWQLLR----IFPKEMLKRIP--AKILEEF 459 (466)
T ss_pred ---------CCcCHHHHHHHHHHHHH----hCCHHHhccCC--HHHHHHh
Confidence 68899999999999986 56777776652 5566666
No 37
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=2.6e-42 Score=317.53 Aligned_cols=151 Identities=24% Similarity=0.253 Sum_probs=144.6
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||||| ++||| |+||||++++| ++|||+|++|+||||||||||+||+++ ||||
T Consensus 268 l~~ge~P~~~gyp~svfs~l~~l~ERag~~~~GSI-T~~~tVl~~~~-~~dpi~d~~rsilDGhIvLsr~la~~~-~PAI 344 (434)
T PRK05922 268 LARGETLSAHHYAASVFHHVSEFTERAGNNDKGSI-TALYAILHYPN-HPDIFTDYLKSLLDGHFFLTPQGKALA-SPPI 344 (434)
T ss_pred HhcCCCCCcCCcCchHHHHhHHHHHhhcCCCCcce-eEEEEEEecCC-CCCccccchhhhcCcEEEEcHHHHhCC-CCCc
Confidence 47899999999999999 68999 99999999998 899999999999999999999999987 9999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGH 149 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~ 149 (198)
|++.|+||+| +.+++++|+++|.++|++|++|+++|++|++|+|++.+| +.|+++++++.|++||+|++.
T Consensus 345 Dvl~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~edli~~G~y~~g~d~~~d~a~~~~~~i~~fl~Q~~~-------- 415 (434)
T PRK05922 345 DILTSLSRSA-RQLALPHHYAAAEELRSLLKAYHEALDIIQLGAYVPGQDAHLDRAVKLLPSIKQFLSQPLS-------- 415 (434)
T ss_pred CCccccccCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCHHHHHHHHhHHHHHHHhCCCCC--------
Confidence 9999999999 799999999999999999999999999999999998888 789999999999999999986
Q ss_pred CCcccCHHHHHHHHHHHHh
Q psy6460 150 AGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 150 ~~~~~~l~etl~~l~~i~~ 168 (198)
+.++++++++.|.+|++
T Consensus 416 --~~~~~~~~~~~l~~~~~ 432 (434)
T PRK05922 416 --SYCALHNTLKQLEALLK 432 (434)
T ss_pred --CCCCHHHHHHHHHHHHh
Confidence 79999999999999985
No 38
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=1.7e-42 Score=319.68 Aligned_cols=152 Identities=34% Similarity=0.503 Sum_probs=145.1
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||++| ++||| |+||||+++|||++|||+|++++|+||||+|||+||++||||||
T Consensus 274 l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSI-T~i~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAI 352 (440)
T TIGR01026 274 LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSI-TAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAI 352 (440)
T ss_pred HhcCCCCcccccChhHHHHHHHHHHHhccCCCCee-eEEEEEEccCcCCCcchhhhhccccceEEEEecchhhCCccCcc
Confidence 36899999999999999 67999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGH 149 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~ 149 (198)
||+.|+||+| +.+++++|+++++++|++|++|+++++|+++|+|..++| +.|.++.++++|++||+|+++
T Consensus 353 d~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~ig~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~-------- 423 (440)
T TIGR01026 353 DVLASISRLM-TAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQRGSDRELDFAIAKYPKLERFLKQGIN-------- 423 (440)
T ss_pred CCCcccccCc-cccCCHHHHHHHHHHHHHHHhhHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHcCCCCC--------
Confidence 9999999999 799999999999999999999999999999999987665 778899999999999999987
Q ss_pred CCcccCHHHHHHHHHHHH
Q psy6460 150 AGKLVPLEETIKGFSEIL 167 (198)
Q Consensus 150 ~~~~~~l~etl~~l~~i~ 167 (198)
+.++++++++.|.+|+
T Consensus 424 --~~~~~~~~~~~l~~~~ 439 (440)
T TIGR01026 424 --EKVNFEESLQQLEEIF 439 (440)
T ss_pred --CCCCHHHHHHHHHHhh
Confidence 6899999999999986
No 39
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=6.8e-42 Score=318.76 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=150.1
Q ss_pred cccCCCCccCCCCCCCC--------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 4 NASKSWFCIIGYQPDCL--------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf--------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
.+++|||+++||||||| ++||| |++|+|++++||+++|||+++++||||||+|||+||++|||||
T Consensus 254 LllgepPgregYPg~vF~~~srLlERAg~~~g~GSI-TalpiV~t~~dDis~pIpdnv~sItDGqIvLsr~L~~~G~~PA 332 (507)
T PRK07165 254 LLTNKPVGKEAFPGDMFFAHSKLLERAGKFKNRKTI-TALPILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPA 332 (507)
T ss_pred hhccCCCCccCCCchHHHHhHHHHHhccCCCCCCce-EEEEEEECCCCCCCCcchhhhccccCeEEEEcHHHHhCCCCCC
Confidence 36899999999999999 47999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCC
Q psy6460 70 VDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGH 149 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~ 149 (198)
|||+.|+||+| +.++++.|+++|..+|++|++|+++++++++ |++ ++++++.+|+++++|++||+|+.+
T Consensus 333 IDvl~SvSRv~-~~~q~~~~~~~a~~~r~~la~Y~e~e~~~~~-~~~-ld~~~~~~l~~g~~i~~~L~Q~~~-------- 401 (507)
T PRK07165 333 IDIDLSVSRTG-SSVQSKTITKVAGEISKIYRAYKRQLKLSML-DYD-LNKETSDLLFKGKMIEKMFNQKGF-------- 401 (507)
T ss_pred cCCccchhhcc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-CCHHHHHHHHHHHHHHHHhCCCCC--------
Confidence 99999999999 6999999999999999999999999999999 674 888999999999999999999976
Q ss_pred CCcccCHHHHHHHHHHHHhCcCCCCcc
Q psy6460 150 AGKLVPLEETIKGFSEILAGKYDHLPE 176 (198)
Q Consensus 150 ~~~~~~l~etl~~l~~i~~g~~d~ip~ 176 (198)
++.+..+.+..+..+..|.++++|+
T Consensus 402 --~~~~~~~~~~~~~~~~~~~l~~~~~ 426 (507)
T PRK07165 402 --SLYSYRFVLLISKLISWGLLKDVKD 426 (507)
T ss_pred --CCCCHHHHHHHHHHHHhhhhhhCCc
Confidence 5778888888888899999999998
No 40
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=9.2e-42 Score=313.89 Aligned_cols=151 Identities=28% Similarity=0.370 Sum_probs=144.3
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.+++|||+. |||+++| ++||| |++|||++||||++|||+|++++|+||||+|||+||++||||||
T Consensus 267 l~~~e~p~~-G~~~~~~s~l~~L~ERag~~~~GSi-T~~~tvlv~~dD~~dpI~d~~~si~DG~ivLsr~la~~g~~PAI 344 (432)
T PRK06793 267 IAVKELPIG-GKTLLMESYMKKLLERSGKTQKGSI-TGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAI 344 (432)
T ss_pred HHhcCCCCC-CeeeeeeccchhHHHHhccCCCcce-EEEEEEEecCCCCCCcchHHhhhhcceEEEEcHHHHhCCCCCcc
Confidence 367999986 9999998 68999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHH-HHHHHHHHhcCCCccchhhcC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVA-RARKIQRFLSQPFQVAEVFTG 148 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~-~~~~i~~fL~Q~~~~~d~ft~ 148 (198)
||+.|+||+| +.+++++|+++|+++|++|++|+++++++++|+|.++++ +.+.++. +++.|++||+|+.+
T Consensus 345 Dv~~S~SR~~-~~~~~~~~~~~a~~~r~~la~y~e~e~~i~~g~y~~g~~~~~d~ai~~~~~~i~~fl~Q~~~------- 416 (432)
T PRK06793 345 SVLDSVSRIM-EEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENAENAYIFECKNKVEGINTFLKQGRS------- 416 (432)
T ss_pred CCCcccCcCc-cccCCHHHHHHHHHHHHHHHhChHHHHHHHhCCccCCCCHHHHHHHHHhHHHHHHHhCCCCC-------
Confidence 9999999999 699999999999999999999999999999999999988 8889999 99999999999986
Q ss_pred CCCcccCHHHHHHHHHHHH
Q psy6460 149 HAGKLVPLEETIKGFSEIL 167 (198)
Q Consensus 149 ~~~~~~~l~etl~~l~~i~ 167 (198)
+.++++++++.|.+++
T Consensus 417 ---~~~~~~~~~~~l~~~~ 432 (432)
T PRK06793 417 ---DSFQFDDIVEAMHHIV 432 (432)
T ss_pred ---CCCCHHHHHHHHHhhC
Confidence 7999999999998874
No 41
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=5.2e-41 Score=299.64 Aligned_cols=133 Identities=34% Similarity=0.476 Sum_probs=128.4
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||||+++||||++| +.||| |+||||++||||++|||++++++|+||||+|||+||++||||||
T Consensus 180 ~~~ge~p~~~gyp~~~~~~~~~l~ERag~~~~GSI-T~i~tv~~~gdd~~dpi~~~~~~~~dg~ivL~r~la~~g~~PAi 258 (326)
T cd01136 180 LAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSI-TAFYTVLVEGDDLNEPIADAVRSILDGHIVLSRALAAAGHYPAI 258 (326)
T ss_pred HhcCCCCCcCCcChHHHHHhHHHHHHhcCCCCCCe-eeeeeeeecCCCCCcchHHhhhhccceEEEEcCcHHHcCCCCCc
Confidence 36899999999999999 67999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcC
Q psy6460 71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQ 138 (198)
Q Consensus 71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q 138 (198)
||+.|+||++ +.+++++|+++++++|++|++|+|+++++++|+|.+..| +.|++++++++|++||+|
T Consensus 259 d~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~~i~~g~y~~g~d~~~d~~i~~~~~i~~~l~Q 326 (326)
T cd01136 259 DVLKSISRLM-NAVVTPEHKEAARKLRELLSAYQEVEDLIRIGAYKKGSDPEVDEAIKLLPKIEAFLKQ 326 (326)
T ss_pred ccccccccCc-cccCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCHHHHHHHHhHHHHHHHhCC
Confidence 9999999999 799999999999999999999999999999999888877 778899999999999998
No 42
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=9.2e-41 Score=331.66 Aligned_cols=157 Identities=21% Similarity=0.269 Sum_probs=145.6
Q ss_pred cccCCCCccCCCCCCCC--------------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHh
Q psy6460 4 NASKSWFCIIGYQPDCL--------------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAE 63 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf--------------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~ 63 (198)
.++||||+++||||||| ++||| |+||||++||||++||||+++++|+||||+|||+||+
T Consensus 774 ~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSI-T~i~~V~~~g~D~s~Pv~~~~~~i~dg~i~L~~~La~ 852 (1017)
T PRK14698 774 GRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSV-SVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLAR 852 (1017)
T ss_pred HhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcce-EEEEEEECCCCCCCCcHHHHHHHHhCcEEecCHHHHh
Confidence 47999999999999999 24999 9999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCCCCCCCCCC-------CCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HH
Q psy6460 64 LGIYPAVDPLDSTSRIMDPNI-------IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RF 135 (198)
Q Consensus 64 ~g~yPAID~l~S~SR~~~~~i-------~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~f 135 (198)
+||||||||+.|+||+| +.+ ++++|.+++++++++|++|+++++++++||.+.+++.|+..+++++.|+ .|
T Consensus 853 ~g~~PAId~l~S~Sr~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~el~~~i~l~g~~~l~~~d~~~~~~~~~i~e~f 931 (1017)
T PRK14698 853 RRHFPAINWLTSYSLYV-DAVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPDALPERERAILLVARMLREDY 931 (1017)
T ss_pred CCCCCCcCcccchhhhc-ccccchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHhcc
Confidence 99999999999999999 566 7999999999999999999999999999998899999999999999995 89
Q ss_pred hcCCCccchhhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 136 LSQPFQVAEVFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 136 L~Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
|+|+.+. +.+++|++++++..|..|+.
T Consensus 932 L~Q~~~~------~~d~~~~~~~~~~~l~~i~~ 958 (1017)
T PRK14698 932 LQQDAFD------EVDTYCPPEKQVTMMRVLLN 958 (1017)
T ss_pred CCCCCCC------ccccCCCHHHHHHHHHHHHH
Confidence 9999652 44577899999999988875
No 43
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.2e-40 Score=304.48 Aligned_cols=152 Identities=29% Similarity=0.402 Sum_probs=146.8
Q ss_pred ccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460 5 ASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 71 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID 71 (198)
+++|||+++||||++| ++||| |+|+||+++++||+||++|++++|+||||+||++|+++|||||||
T Consensus 270 ~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsI-T~~~TVlv~~hdm~e~i~d~v~~i~dG~Ivls~~la~~g~~PAId 348 (438)
T PRK07721 270 AVGEPPTTKGYTPSVFAILPKLLERTGTNASGSI-TAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAIN 348 (438)
T ss_pred hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCe-eeEEEEEEECCCCCchhhhhEEEecCEEEEEeccHHHCCCCCccC
Confidence 6899999999999999 37999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460 72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLSQPFQVAEVFTGHA 150 (198)
Q Consensus 72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~ 150 (198)
|+.|+||+| +.+++++|+++|+++|++|++|+++++++++|+|.+++| +.|.+++++++|++||+|+++
T Consensus 349 v~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~y~~g~~~~~d~a~~~~~~~~~fl~Q~~~--------- 418 (438)
T PRK07721 349 VLKSVSRVM-NHIVSPEHKEAANRFRELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQIISFLKQGTD--------- 418 (438)
T ss_pred Ccccccccc-cccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCcCCCCHHHHHHHHhHHHHHHHhCCCCC---------
Confidence 999999999 699999999999999999999999999999999999997 889999999999999999987
Q ss_pred CcccCHHHHHHHHHHHHh
Q psy6460 151 GKLVPLEETIKGFSEILA 168 (198)
Q Consensus 151 ~~~~~l~etl~~l~~i~~ 168 (198)
+..++++++..|++|+.
T Consensus 419 -~~~~~~~~~~~l~~~~~ 435 (438)
T PRK07721 419 -EKATFEESIQALLSLFG 435 (438)
T ss_pred -CCCCHHHHHHHHHHHHh
Confidence 78999999999999985
No 44
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=4.5e-39 Score=300.16 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=145.5
Q ss_pred ccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCC
Q psy6460 5 ASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 67 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~y 67 (198)
+++|||+++||||++| ++||| |+||+|++++||+++|||+++++|+||||+|||+||++|||
T Consensus 311 llgrpPgRegYPgdVF~lhsrLlERAg~l~~~~G~GSI-TAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~Giy 389 (574)
T PTZ00185 311 LLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSV-TALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQR 389 (574)
T ss_pred hcCCCCCCCCcCccHHHHhHHHHHhcccccCCCCCcce-EEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCCCC
Confidence 6899999999999999 26999 99999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 68 PAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 68 PAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
|||||+.|+||++ +.++.+.|+++|+++|.+|++|+|++.+.++|+ |-|...|++++++.+.|+|+.
T Consensus 390 PAIDVl~SvSRvg-~~aq~~~~k~vAg~lr~~LaqY~El~~fa~fgs-----dld~~~l~rG~r~~ellkQ~~------- 456 (574)
T PTZ00185 390 PAVNIGLSVSRVG-SSAQNVAMKAVAGKLKGILAEYRKLAADSVGGS-----QVQTVPMIRGARFVALFNQKN------- 456 (574)
T ss_pred CCcCCcccccccC-CccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----hhhHHHHHhhHHHHHHHCCCC-------
Confidence 9999999999999 799999999999999999999999999999973 323389999999999999994
Q ss_pred CCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 148 GHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+.++++.+..++...+|.+|++|.+..
T Consensus 457 -----p~~~~~qv~~l~a~~~g~ld~~~~~~i 483 (574)
T PTZ00185 457 -----PSFFMNALVSLYACLNGYLDDVKVNYA 483 (574)
T ss_pred -----CCCHHHHHHHHHHHhcCCcccCcHHHH
Confidence 578999999999999999999997553
No 45
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=9.6e-39 Score=293.73 Aligned_cols=160 Identities=23% Similarity=0.240 Sum_probs=142.1
Q ss_pred cccCCCCccCCCCCCCC--------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 4 NASKSWFCIIGYQPDCL--------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf--------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
.++||||+++||||||| ++||| |+||+|++|+||++|||||++++||||||||||+|
T Consensus 252 l~~ge~P~r~GYpp~lfs~L~~l~ERag~~~~~GSI-Tai~~V~~p~DD~tdPi~d~~~silDGqIvLsR~l-------- 322 (436)
T PRK02118 252 ITMDQIPSNRGYPGSLYSDLASRYEKAVDFEDGGSI-TIIAVTTMPGDDVTHPVPDNTGYITEGQFYLRRGR-------- 322 (436)
T ss_pred HhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCCCeeE-EEEEEEEcCCCCcCccHHHHHHHhcCcEEEecccc--------
Confidence 36899999999999999 47999 99999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchh
Q psy6460 70 VDPLDSTSRIMDPNIIG----AEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEV 145 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~----~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ 145 (198)
||||.|+||+| +++++ ++|+++|++++++|++|+++++|+++| + +|+++|+..+.+++++|+||-|
T Consensus 323 ID~l~S~SRl~-~~v~g~~t~~~h~~~a~~l~~~~a~y~e~~dli~iG-~-eLs~~d~~~l~~~~~~e~~~~~------- 392 (436)
T PRK02118 323 IDPFGSLSRLK-QLVIGKKTREDHGDLMNAMIRLYADSREAKEKMAMG-F-KLSNWDEKLLKFSELFESRLMD------- 392 (436)
T ss_pred ccCcccccccc-ccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-hcCHHHHHHHHHHHHHHHHhhc-------
Confidence 99999999999 79999 699999999999999999999999985 5 8999999999999999966633
Q ss_pred hcCCCCcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHH
Q psy6460 146 FTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKA 192 (198)
Q Consensus 146 ft~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~ 192 (198)
++++++++||++.+|+|+. .+|+.+...+ -++.++|+
T Consensus 393 ----~g~~~~~~etl~~~~~~l~----~~~~~~~~~~--~~~~~~~~ 429 (436)
T PRK02118 393 ----LEVNIPLEEALDLGWKILA----QCFHPEEVGI--KEQLIDKY 429 (436)
T ss_pred ----CCCcccHHHHHHHHHHHHH----HCCHHHHhcC--CHHHHHHh
Confidence 2368999999999999997 3455555333 25666666
No 46
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=6.9e-33 Score=251.03 Aligned_cols=170 Identities=28% Similarity=0.388 Sum_probs=156.8
Q ss_pred ccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
+.+|.|+++|||+|++ ++||| |.++..++|+||+||||||.|..|+.|||+|||+|.++|+||+
T Consensus 265 areeVPgrRGYPGymYTdLatiYErAg~i~g~~GSi-TqipIlTMP~DDITHPIPDlTGYITEGQivl~r~l~~~gIyPp 343 (463)
T COG1156 265 AREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSI-TQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPP 343 (463)
T ss_pred hhccCCCcCCCcchHHHHHHHHHHhhceeccCCCce-EEEEeeecCCCCcCCCCCcccceeccceEEEEhhcccCCcCCC
Confidence 6799999999999999 68999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHhcCCCccc
Q psy6460 70 VDPLDSTSRIMDPNIIG-----AEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQPFQVA 143 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~-----~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL~Q~~~~~ 143 (198)
||+|.|+||+| +..++ ++|..+++++-+.|++.++++++..++|.+++++.|++.++++..++ .|++|.++
T Consensus 344 i~vlpSLSRL~-~~giG~g~TReDH~~~snql~a~YA~g~d~r~l~avvge~aLs~~D~~~l~F~d~FE~~fi~qg~~-- 420 (463)
T COG1156 344 INVLPSLSRLM-KDGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVAVVGEEALSERDRKYLKFADLFEQRFIKQGRY-- 420 (463)
T ss_pred ccccccHHHHh-hcccCCCccccccHHHHHHHHHHHhcchhHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHhcccc--
Confidence 99999999999 45555 69999999999999999999999999999999999999999999997 99999987
Q ss_pred hhhcCCCCcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHH
Q psy6460 144 EVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKA 192 (198)
Q Consensus 144 d~ft~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~ 192 (198)
+..++++|++.-|+|+. -+|+.++ .+--++++.|+
T Consensus 421 --------enrsieetLdlgW~lL~----~lp~~el--~ri~~~~I~ky 455 (463)
T COG1156 421 --------ENRSIEETLDLGWELLS----ILPESEL--TRIKPDLIDKY 455 (463)
T ss_pred --------cCCCHHHHHHHhHHHHH----hCCHhHh--ccCCHHHHHHh
Confidence 79999999999999997 4566666 44446777776
No 47
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.97 E-value=7.9e-31 Score=239.92 Aligned_cols=160 Identities=20% Similarity=0.225 Sum_probs=152.8
Q ss_pred cCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 6 SKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 6 l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
++||||+++|||+|| ++||| |+++.+.+.++|++..||.|+.||+||||+|+.+|+++|+.|
T Consensus 277 lrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSi-TALPIIETqagDvSAyIpTNVISITDGQIfl~t~LFn~G~rP 355 (504)
T COG0056 277 LRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSI-TALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRP 355 (504)
T ss_pred hcCCCCccCCCCceeehhHHHHHHHHhhccccCCCce-EeeeeEEeccCceeeecccceEEecCCcEEeehhhhhcCCCc
Confidence 789999999999999 67999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcC
Q psy6460 69 AVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTG 148 (198)
Q Consensus 69 AID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~ 148 (198)
|||+..|+||+. +..+.+..++++..+|..|++|+|++.+.++|. .|.+.++..|++++++.+.|+|+.+
T Consensus 356 AInvGlSVSRvG-ssAQ~kamkkvag~lrl~laqYrel~afsqf~s--dLd~~T~~~l~~G~r~~ellkQ~~~------- 425 (504)
T COG0056 356 AINVGLSVSRVG-SAAQIKAMKKVAGSLRLILAQYRELEAFSQFGS--DLDKATRKQLERGKRLTELLKQPQY------- 425 (504)
T ss_pred cccCCceeeccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhCHHHHHHHHccHHHHHHhcCCCC-------
Confidence 999999999999 699999999999999999999999999999973 5778899999999999999999987
Q ss_pred CCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 149 HAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 149 ~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
++++.++.+--++.+..|.+|++|++..
T Consensus 426 ---~p~sv~~qv~ilya~~~G~ld~v~v~~v 453 (504)
T COG0056 426 ---SPLSVEEQVLILYAGTNGYLDDVPVEKV 453 (504)
T ss_pred ---CCccHHHHHHHHHHHhcCcccCCcHHHH
Confidence 7999999999999999999999998654
No 48
>KOG1352|consensus
Probab=99.97 E-value=9.9e-32 Score=243.57 Aligned_cols=157 Identities=24% Similarity=0.308 Sum_probs=145.5
Q ss_pred cccCCCCccCCCCCCCC--------------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHh
Q psy6460 4 NASKSWFCIIGYQPDCL--------------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAE 63 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf--------------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~ 63 (198)
.||.|||+..|||+|+. +.||+ |++++|++|||||+|||+.+|.+|+..+|.||++||+
T Consensus 365 GRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsV-sIVgAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQ 443 (618)
T KOG1352|consen 365 GRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSV-SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQ 443 (618)
T ss_pred hhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCCCCcCcee-EEEEeecCCCCCcCCcchhhhhheeeehhcccHHHHh
Confidence 37899999999999987 88999 9999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCCCCCCCCCC------CCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHh
Q psy6460 64 LGIYPAVDPLDSTSRIMDPNI------IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFL 136 (198)
Q Consensus 64 ~g~yPAID~l~S~SR~~~~~i------~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL 136 (198)
|.|||.|||+.|+|++| ..+ ..+++..+..++|++|+..+++.++++++|..+|++.|+.+++.+..|+ +||
T Consensus 444 RKHFPSiNwliSYSkY~-~aL~~~Ye~~~peF~~lRtk~keilq~eedl~eivQLVGK~aL~etdKitLevaklik~DfL 522 (618)
T KOG1352|consen 444 RKHFPSINWLISYSKYM-RALDPFYEKNYPEFVVLRTKAKEILQEEEDLSEIVQLVGKSALAETDKITLEVAKLIKDDFL 522 (618)
T ss_pred hccCCccchhhhHHHHH-HHHHHHHHhcCCCccchHHHHHHHHhhhhhHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHH
Confidence 99999999999999999 433 3478889999999999999999999999999999999999999999995 999
Q ss_pred cCCCccchhhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 137 SQPFQVAEVFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 137 ~Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
||+-+. +++.+|++.+|+.+|..++.
T Consensus 523 qQN~ys------~YD~~CPfyKt~~Mlrn~i~ 548 (618)
T KOG1352|consen 523 QQNGYS------PYDRFCPFYKTVGMLRNIIA 548 (618)
T ss_pred hhcCCC------chhhcCchHHHHHHHHHHHH
Confidence 999553 67788899999999998875
No 49
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=99.97 E-value=5.2e-31 Score=244.41 Aligned_cols=143 Identities=24% Similarity=0.311 Sum_probs=134.8
Q ss_pred cccCCCCccCCCCCCCC--------------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHh
Q psy6460 4 NASKSWFCIIGYQPDCL--------------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAE 63 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf--------------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~ 63 (198)
.|+||||+.+|||+||. +.||+ |++++|+++|+||++||+.+|++++..+|.||++||+
T Consensus 342 gRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~Gsv-tV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~ 420 (588)
T COG1155 342 GRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSI-TVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALAN 420 (588)
T ss_pred cccccCCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEE-EEecCCCCCCCCcCcccchheeeeeeeecccchhhhh
Confidence 47999999999999998 55999 9999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCCCCCCC------CCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHh
Q psy6460 64 LGIYPAVDPLDSTSRIMD------PNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFL 136 (198)
Q Consensus 64 ~g~yPAID~l~S~SR~~~------~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL 136 (198)
++|||||||+.|+|.+.+ ..-++++|.++..+++++|++..+++++++++|.|++++.++.++..++.|. +||
T Consensus 421 ~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~va~~ire~fL 500 (588)
T COG1155 421 RRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPEKEKSILDVARIIREDFL 500 (588)
T ss_pred cccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999884 2357899999999999999999999999999999999999999999999995 999
Q ss_pred cCC-Cccchhhc
Q psy6460 137 SQP-FQVAEVFT 147 (198)
Q Consensus 137 ~Q~-~~~~d~ft 147 (198)
||+ |+..|+||
T Consensus 501 qQnafd~vD~~~ 512 (588)
T COG1155 501 QQNAFDEIDAYC 512 (588)
T ss_pred hhcccCcccccC
Confidence 999 88888887
No 50
>PRK12608 transcription termination factor Rho; Provisional
Probab=99.96 E-value=2.2e-30 Score=234.83 Aligned_cols=106 Identities=18% Similarity=0.220 Sum_probs=101.2
Q ss_pred ccCCCCccCCCCCCCC--------------CCcceecceeEEEec-CCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL--------------KRFSIFLPAQAIYVP-ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf--------------~~GSI~T~i~tVl~~-gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
+.||+|+ +||||++| ++||| |+|||||++ |+||+|||++++++++||||||||+||++|||||
T Consensus 242 ~~G~~~s-~G~~~s~~~~~~rl~~~A~~~~~~GSi-T~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPA 319 (380)
T PRK12608 242 SSGRTLS-GGVDARALQRPKRLFGAARNIEEGGSL-TIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPA 319 (380)
T ss_pred ccCCCCC-CCcChHHHhhhHHHHHhcCCCCCCcch-hheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCc
Confidence 5799999 99999999 47999 999999999 9999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHh
Q psy6460 70 VDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAIL 113 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lg 113 (198)
||+++|.||.+ +.+++++|++.++++|++|+.|++++.+-.+.
T Consensus 320 IDi~~S~sR~~-~~l~~~~~~~~~~~~R~~l~~~~~~e~~~~~~ 362 (380)
T PRK12608 320 IDIAKSGTRRE-ELLLDSKELEKVRRLRRALASRKPVEAMEALL 362 (380)
T ss_pred cCcccccCcch-hhcCCHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999 79999999999999999999999999876654
No 51
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=99.96 E-value=4.8e-30 Score=224.38 Aligned_cols=77 Identities=74% Similarity=1.012 Sum_probs=74.5
Q ss_pred cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460 4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 70 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI 70 (198)
.++||+|+++||||+|| ++||| |+||||++++||++|||++++++|+||||+|||+||++||||||
T Consensus 184 ~~~ge~p~~~gyp~~~f~~~~~l~ERag~~~~GSi-T~~~~v~~~~dD~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAI 262 (274)
T cd01133 184 ALLGRMPSAVGYQPTLATEMGALQERITSTKKGSI-TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 262 (274)
T ss_pred HHcCCCCCCcCcCccHHHHHHHHHHHhcCCCCccc-ceEEEEEecCCCCCCchHHHHHHhcceEEEEcHHHHhCCCCCCc
Confidence 36899999999999999 68999 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy6460 71 DPLDSTSRIMD 81 (198)
Q Consensus 71 D~l~S~SR~~~ 81 (198)
||+.|+||+|+
T Consensus 263 d~~~S~SR~~~ 273 (274)
T cd01133 263 DPLDSTSRILD 273 (274)
T ss_pred CCccchhcccC
Confidence 99999999994
No 52
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=99.96 E-value=9.4e-30 Score=222.48 Aligned_cols=76 Identities=21% Similarity=0.147 Sum_probs=72.8
Q ss_pred cccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCC
Q psy6460 4 NASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 66 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~ 66 (198)
.+++|||+++||||++| ++||| |+||+|++||||++|||++++++|+||||+|||+||++||
T Consensus 182 l~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~~~GSI-T~i~~V~~~~dD~~~pi~~~~~~i~dg~ivLsr~la~~g~ 260 (274)
T cd01132 182 LLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSL-TALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNKGI 260 (274)
T ss_pred HhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCCCCcce-EEEEEEEcCCCCcCcchHHHHHhhcCeEEEEcHHHHhCCC
Confidence 47899999999999999 26999 9999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCC
Q psy6460 67 YPAVDPLDSTSRIM 80 (198)
Q Consensus 67 yPAID~l~S~SR~~ 80 (198)
||||||+.|+||+.
T Consensus 261 yPaId~l~S~SR~g 274 (274)
T cd01132 261 RPAINVGLSVSRVG 274 (274)
T ss_pred CCCcCCcccccCCC
Confidence 99999999999973
No 53
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=99.96 E-value=1.1e-29 Score=222.19 Aligned_cols=75 Identities=31% Similarity=0.394 Sum_probs=72.0
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
.+++|||+++||||+|| ++||| |+||||++++||++|||++++++||||||+|||+||++||||
T Consensus 187 l~~gepP~~~gyp~~vf~~~~~l~ERag~~~~~~GSI-Ta~~~V~~~~dD~~dpi~~~~~si~DG~ivLsr~la~~g~~P 265 (276)
T cd01135 187 AAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSI-TQIPILTMPNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYP 265 (276)
T ss_pred hccCCCCCccCcCccHHHHhhHHheecccCCCCCeeE-EEEEEEEccCCCcCcchHHHHHhhcceEEEEcHHHHhCCCCC
Confidence 36899999999999999 25999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCC
Q psy6460 69 AVDPLDSTSRI 79 (198)
Q Consensus 69 AID~l~S~SR~ 79 (198)
||||+.|+||+
T Consensus 266 AID~l~S~SR~ 276 (276)
T cd01135 266 PINVLPSLSRL 276 (276)
T ss_pred CcCCcccccCC
Confidence 99999999996
No 54
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.95 E-value=1.2e-28 Score=225.08 Aligned_cols=106 Identities=17% Similarity=0.183 Sum_probs=100.7
Q ss_pred ccCCCCccCCCCCCCC--------------CCcceecceeEEEec-CCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL--------------KRFSIFLPAQAIYVP-ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf--------------~~GSI~T~i~tVl~~-gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
++||+|+ +||||++| ++||| |+|||||++ |++|+|||++++++++||||+|||+||++|||||
T Consensus 277 ~~G~~~s-~G~~~~~~~~~~~~~~~a~~~~~~GSi-T~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~fPA 354 (415)
T TIGR00767 277 ASGKVLS-GGVDANALHRPKRFFGAARNIEEGGSL-TIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPA 354 (415)
T ss_pred hcCCCCC-CCcChhhhcccHHHHhhcCCCCCCcch-hheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCCCCC
Confidence 6799999 99999998 58999 999999999 9999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHh
Q psy6460 70 VDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAIL 113 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lg 113 (198)
||+++|.||.+ +.+++++|++.++++|++|+.|...+.+-.+.
T Consensus 355 idi~~S~sR~~-~~l~~~~~~~~~~~~r~~l~~~~~~~~~~~~~ 397 (415)
T TIGR00767 355 IDIKKSGTRKE-ELLLTPEELQKIWVLRKIISPMDSIEAMEFLI 397 (415)
T ss_pred cCcccccccch-hhcCCHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999 79999999999999999999999988775554
No 55
>KOG1351|consensus
Probab=99.95 E-value=1.6e-28 Score=216.91 Aligned_cols=153 Identities=25% Similarity=0.295 Sum_probs=143.6
Q ss_pred ccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
|.||.|+++|||+|++ +.||| |.|+.+.+|.||+++||||-|..|+.|+|+.||+|.++.+||+
T Consensus 291 areevpgrrg~pgymytdlatiyeragrvegr~gsi-tqipiltmpnddithpipdltgyitegqiyvdrqlhnr~iypp 369 (489)
T KOG1351|consen 291 AREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSI-TQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP 369 (489)
T ss_pred hhhhCCCcCCCCceehhhHHHHHHHhcccccCCCce-eeeeeEecCCcccCCCCCcccceeecceEEEehhhhcccCCCC
Confidence 6799999999999999 78999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHhcCCCccch
Q psy6460 70 VDPLDSTSRIMDPNI----IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQPFQVAE 144 (198)
Q Consensus 70 ID~l~S~SR~~~~~i----~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL~Q~~~~~d 144 (198)
||+|.|+||+|++.+ .-++|..+.+++-..|+..++++.|..++|.++|+.+|.+.+++..+++ .|+.|+.+
T Consensus 370 invlpslsrlmksaigegmtr~dh~dvsnqlya~yaigkdvqamkavvgeeals~ed~l~lefl~kfek~fi~qg~y--- 446 (489)
T KOG1351|consen 370 INVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFISQGAY--- 446 (489)
T ss_pred cccchhHHHHHHHHhcCCcccccchhhHHHHHHHHHhcchHHHHHHHhcccccChhhhHHHHHHHHHHHHHHhcCCc---
Confidence 999999999996433 4489999999999999999999999999999999999999999999997 99999987
Q ss_pred hhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 145 VFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 145 ~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
+..++-++++.-|.++.
T Consensus 447 -------enrtvfesldi~w~llr 463 (489)
T KOG1351|consen 447 -------ENRTVFESLDIAWQLLR 463 (489)
T ss_pred -------cchhHHHHHHHHHHHHH
Confidence 67888899998888875
No 56
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=99.94 E-value=1e-27 Score=218.64 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=100.9
Q ss_pred ccCCCCccCCCCCCCC--------------CCcceecceeEEEec-CCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL--------------KRFSIFLPAQAIYVP-ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf--------------~~GSI~T~i~tVl~~-gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
+.||+|+ .||+|++| ++||| |+||||+++ |++|+|||++++++++||||+|||+||++|||||
T Consensus 278 ~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e~~GSl-T~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~~r~fPA 355 (416)
T PRK09376 278 SSGKVLS-GGVDANALHRPKRFFGAARNIEEGGSL-TIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPA 355 (416)
T ss_pred ccCCCCC-CCCChhHhhhhHHHHHhhcCCCCCcce-EEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHhcCCCCc
Confidence 5799999 99999999 68999 999999999 9999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHh
Q psy6460 70 VDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAIL 113 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lg 113 (198)
|||++|.||.+ ..+++++|+++++.+|++|+.|++.+.+-.+.
T Consensus 356 IDi~~S~sR~~-~~l~~~~~~~~~~~lR~~l~~~~~~e~~e~~~ 398 (416)
T PRK09376 356 IDINRSGTRKE-ELLLSPEELQKVWILRKILSPMDEVEAMEFLL 398 (416)
T ss_pred cCccccccccc-cccCCHHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 99999999999 79999999999999999999999988776654
No 57
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=99.94 E-value=3.1e-28 Score=219.22 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=72.2
Q ss_pred cccCCCCccCCCCCCCC--------------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHh
Q psy6460 4 NASKSWFCIIGYQPDCL--------------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAE 63 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf--------------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~ 63 (198)
.+++|||+++|||||+| ++||| |+|++|+++||||+|||++++++|+||||+|||+||+
T Consensus 275 ~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSI-T~i~~V~~~g~D~sdPV~~~t~~i~dg~i~Lsr~La~ 353 (369)
T cd01134 275 GRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSV-TIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQ 353 (369)
T ss_pred HhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccE-EEEEEEEccCCCcCcchHHhhHhhcceEEEECHHHHh
Confidence 47999999999999999 24999 9999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCCCCC
Q psy6460 64 LGIYPAVDPLDSTSRI 79 (198)
Q Consensus 64 ~g~yPAID~l~S~SR~ 79 (198)
+||||||||+.|+||+
T Consensus 354 ~g~yPAId~l~S~Sry 369 (369)
T cd01134 354 RRHFPSINWLISYSKY 369 (369)
T ss_pred CCCCCCcCCcccccCC
Confidence 9999999999999996
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=99.93 E-value=4.6e-26 Score=215.30 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=98.0
Q ss_pred CCccCCCCCCCC--------CCcceecceeEEEec-CCCCCCccccccccccCcEEEeeHHHHhcCCCCccCCCCCCCCC
Q psy6460 9 WFCIIGYQPDCL--------KRFSIFLPAQAIYVP-ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 79 (198)
Q Consensus 9 ~P~~~GYp~~vf--------~~GSI~T~i~tVl~~-gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID~l~S~SR~ 79 (198)
+|+..+|||++| ++||| |+||||||+ |++|++||++++++++||||+|||+||++||||||||+.|.||.
T Consensus 534 ~d~~a~ypP~~F~~~AR~iE~gGSL-Tii~TvLVETGS~mDd~Ifeefkgtgn~elvLsR~LAerrifPAIDv~~S~SR~ 612 (672)
T PRK12678 534 VDSTALYPPKRFFGAARNIENGGSL-TIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASGTRK 612 (672)
T ss_pred CchhhccCccHHHHHHHhhccCccc-eeeEEEEeccCCccCcchHHHHhhccCceeeECHHHHhCCCCCccCCCcCcccc
Confidence 799999999999 78999 999999999 89999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHh
Q psy6460 80 MDPNIIGAEHYNIARGVQKILQDYKSLQDIIAIL 113 (198)
Q Consensus 80 ~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lg 113 (198)
+ ..+++++|+++++++|++|+.|...+.+-.|.
T Consensus 613 e-e~l~~~~e~~~~~~lRr~l~~~~~~~a~e~l~ 645 (672)
T PRK12678 613 E-ELLLSPDELAIVHKLRRVLSGLDSQQAIDLLI 645 (672)
T ss_pred c-hhhCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9 69999999999999999999999987765543
No 59
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=99.92 E-value=2.4e-26 Score=194.86 Aligned_cols=73 Identities=41% Similarity=0.518 Sum_probs=67.5
Q ss_pred cccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCC
Q psy6460 4 NASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 66 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~ 66 (198)
.+++|+|+++||||++| ++||| |+|++|++|+||++|||++++++|+||||+|||+||++||
T Consensus 126 ~~~g~~p~~~Gyp~~~~~~l~~l~ERag~~~~~~~~GSI-T~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~ 204 (215)
T PF00006_consen 126 LLLGEPPGREGYPPSLFSDLASLYERAGKVNSEEGGGSI-TAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGI 204 (215)
T ss_dssp HHTTSSBBGGGSBTTHHHHHHHHHTTSEEBSTTTTSEEE-EEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-
T ss_pred cccccccccccccchhccchhhHHHHhhccccccCCcee-eeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCC
Confidence 36899999999999998 67999 9999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCC
Q psy6460 67 YPAVDPLDSTS 77 (198)
Q Consensus 67 yPAID~l~S~S 77 (198)
||||||+.|+|
T Consensus 205 ~PAId~~~S~S 215 (215)
T PF00006_consen 205 FPAIDVLKSVS 215 (215)
T ss_dssp SS-BETTTEEE
T ss_pred CCccCCccCCC
Confidence 99999999987
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.91 E-value=8.6e-25 Score=188.87 Aligned_cols=106 Identities=21% Similarity=0.233 Sum_probs=100.7
Q ss_pred ccCCCCccCCCCCCCC--------------CCcceecceeEEEec-CCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL--------------KRFSIFLPAQAIYVP-ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf--------------~~GSI~T~i~tVl~~-gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
..|++| ..||||++| ++||| |++|||+++ +++++||+.++.++++||||+|||+|+..|||||
T Consensus 125 ~~G~~~-sgG~~~~~~~~~~q~~~~Ar~~~~~gsI-t~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~pa 202 (249)
T cd01128 125 PSGKIL-SGGVDANALHKPKRFFGAARNIEEGGSL-TIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPA 202 (249)
T ss_pred cCCCCC-CCCcChhhhhhhHHHHHHhcCCCCCCce-EEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCe
Confidence 578999 689999999 68999 999999999 7888899999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHh
Q psy6460 70 VDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAIL 113 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lg 113 (198)
|||+.|.||.+ +.+++++|++.+.++|++|+.|++++++..+.
T Consensus 203 I~vl~s~sr~~-~ll~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 245 (249)
T cd01128 203 IDILKSGTRKE-ELLLDPEELQRMWLLRRVLSDMDPIEAMEFLL 245 (249)
T ss_pred EEEcCCCCccc-hhhCCHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 99999999998 79999999999999999999999999998875
No 61
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=99.48 E-value=2.6e-13 Score=103.90 Aligned_cols=95 Identities=34% Similarity=0.521 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCCCcccC-HHHHHHHHHHHHh
Q psy6460 90 YNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVP-LEETIKGFSEILA 168 (198)
Q Consensus 90 ~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~~~~~~-l~etl~~l~~i~~ 168 (198)
++++++++.+|++|+|+++++++.|.++++++++..+.++++|++||+|+.++.- ++++..+. +.+++..+++++.
T Consensus 1 k~v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e~LkQ~~~~~~---~~~~q~~~~~~~~~~~~~~~~~ 77 (113)
T PF00306_consen 1 KKVAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIREFLKQNAFDPV---PLEKQYVMILEETIDLFYAILR 77 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHHHT-BSTTTTT---SSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCCCCCCCC---cCcchhhhHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999889999976311 33344457 8889999999999
Q ss_pred CcCCCCccchhccccChHH
Q psy6460 169 GKYDHLPEVAFYMVGPIEE 187 (198)
Q Consensus 169 g~~d~ip~~~~~~~g~~~~ 187 (198)
|+++++|+..+..+++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~ 96 (113)
T PF00306_consen 78 GKFDDIPEEELEKIETKDI 96 (113)
T ss_dssp TTTTTS-GGGHHHHHHHHH
T ss_pred CCCccCCHHHHHHHhhHHH
Confidence 9999999999999977644
No 62
>KOG1353|consensus
Probab=99.42 E-value=2.1e-13 Score=118.72 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=96.3
Q ss_pred cCCCCCCccccccccccCcEEEeeHHHHhcCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhc
Q psy6460 35 PADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILG 114 (198)
Q Consensus 35 ~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg 114 (198)
.++|.+..||.++.+| ||+|.|..+|+.+|+.||||+..|+||+. +..+.+..+++|..++--|++|+|+..+.++|.
T Consensus 223 q~gdvsayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvg-saaq~kamkqvag~~klelaq~revaafaqfgs 300 (340)
T KOG1353|consen 223 QAGDVSAYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVG-SAAQTKAMKQVAGSLKLELAQYREVAAFAQFGS 300 (340)
T ss_pred cccceeeecccceeee-cchhHHHHHHHHhccchhheeeeEeeecc-chHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc
Confidence 5799999999999999 99999999999999999999999999999 788889999999999999999999999999984
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCc
Q psy6460 115 MDELSEEDKLTVARARKIQRFLSQPFQ 141 (198)
Q Consensus 115 ~d~l~d~~~~~l~~~~~i~~fL~Q~~~ 141 (198)
.|.-.....+.++.++.+.|+|+.+
T Consensus 301 --dlda~tq~~l~rg~rltellkq~qy 325 (340)
T KOG1353|consen 301 --DLDAATQQLLNRGVRLTELLKQGQY 325 (340)
T ss_pred --cccHHHHHHHHhhhHHHHHHhcCCC
Confidence 3444678999999999999999987
No 63
>COG1158 Rho Transcription termination factor [Transcription]
Probab=99.28 E-value=3.1e-12 Score=115.08 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=84.9
Q ss_pred CCCCCCC--------CCcceecceeEEEec-CCCCCCccccccccccCcEEEeeHHHHhcCCCCccCCCCCCCCCCCCCC
Q psy6460 14 GYQPDCL--------KRFSIFLPAQAIYVP-ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI 84 (198)
Q Consensus 14 GYp~~vf--------~~GSI~T~i~tVl~~-gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID~l~S~SR~~~~~i 84 (198)
-|+|.-| .+||+ |+|.|.+++ |.-|+|-|.++.++.-+..++|||+||++++|||||+.+|-.|-- ...
T Consensus 296 L~~PKrFFGAARNIEeGGSL-TIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKE-eLL 373 (422)
T COG1158 296 LHRPKRFFGAARNIEEGGSL-TIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKE-ELL 373 (422)
T ss_pred hcCchhhhhhhhccccCcch-hhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchH-hhc
Confidence 4666666 78999 999999999 578999999999999999999999999999999999999999998 588
Q ss_pred CCHHHHHHHHHHHHHHhhhHhHHHH
Q psy6460 85 IGAEHYNIARGVQKILQDYKSLQDI 109 (198)
Q Consensus 85 ~~~~~~~~a~~~r~lla~y~e~~~l 109 (198)
+++++.+..+.+|++|+.-.+.+.+
T Consensus 374 l~~~~l~k~w~lRr~l~~md~~~a~ 398 (422)
T COG1158 374 LSPDELQKMWVLRRILSPMDEIDAI 398 (422)
T ss_pred CCHHHHHHHHHHHHHhcCCChHHHH
Confidence 9999999999999999876555544
No 64
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=82.28 E-value=1.2 Score=43.08 Aligned_cols=142 Identities=5% Similarity=-0.104 Sum_probs=115.0
Q ss_pred ceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccCCCCCCCCCCCCCCCC-------HHHHHHHHHH
Q psy6460 24 SIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIG-------AEHYNIARGV 96 (198)
Q Consensus 24 SI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID~l~S~SR~~~~~i~~-------~~~~~~a~~~ 96 (198)
++ |+.-||.-+..+...++.+.+-+.+=..|-+.-.|..+.++|-+.|..+++-.- +.+.+ +++...-.++
T Consensus 378 ~r-~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~sy-S~Y~~~~~~~~~~~v~~~~~~~ 455 (588)
T COG1155 378 ER-FGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSY-SLYTEDLRSWYDENVSPEWGAL 455 (588)
T ss_pred cc-eEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHH-HHHHHHHHHHhhcccCchHHHH
Confidence 45 788888888999999999999999999999999999999999999999998766 45644 2344456677
Q ss_pred HHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 97 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 97 r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
|..+.+.-+.++-++..++..+.|......+....+.+.++|.|---++|. .-+-+|++.++...|..|+.
T Consensus 456 r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~va~~ire~fLqQnafd-~vD~~~~~~kq~~mm~~i~~ 526 (588)
T COG1155 456 RDQAMEILQRESELQEIVQLVGYDALPEKEKSILDVARIIREDFLQQNAFD-EIDAYCSLRKQYLMLKAIME 526 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHhhcccC-cccccCCHHHHHHHHHHHHH
Confidence 888888888888888888888888777777777777788888864445555 45778999998888877754
No 65
>KOG0506|consensus
Probab=48.30 E-value=9.1 Score=36.92 Aligned_cols=51 Identities=10% Similarity=0.219 Sum_probs=43.9
Q ss_pred cEEEeeHHHHhcCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhH
Q psy6460 53 ATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSL 106 (198)
Q Consensus 53 g~ivLsr~La~~g~yPAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~ 106 (198)
-||.|+++++.+=++|.|+|+ ||....+.+-|+|......+..|...-++.
T Consensus 143 ~gw~LdKDlFKkcI~sSI~lv---SqALrkqmVIPdw~~Fts~I~tIFEscke~ 193 (622)
T KOG0506|consen 143 SGWLLDKDLFKKCIFSSIVLV---SQALRKQMVIPDWEEFTSHIDTIFESCKES 193 (622)
T ss_pred cceeecHHHHHHhhccchhHH---HHHHhcCccCCcHHHHHHHHHHHHHHHHhc
Confidence 599999999999999999996 777655778899999999998888766654
No 66
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=47.08 E-value=19 Score=26.89 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=33.6
Q ss_pred CCcceecceeEEEecCCCCCCc----cccccccccCcEEEeeH
Q psy6460 21 KRFSIFLPAQAIYVPADDLTDP----APATTFAHLDATTVLSR 59 (198)
Q Consensus 21 ~~GSI~T~i~tVl~~gdD~~dP----v~d~~~~ilDg~ivLsr 59 (198)
+++.+ |.+.+.-...++...| ++..+..+.|+-|+|+|
T Consensus 124 ~~~~~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 124 RKGGV-TVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred hcCCc-eEEEEEecCCccccCcccccCccceeeecceEEEEeC
Confidence 55788 9999999998888888 88999999999999975
No 67
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=36.50 E-value=68 Score=30.72 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHH
Q psy6460 91 NIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVAR 128 (198)
Q Consensus 91 ~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~ 128 (198)
+..+.++++++.|++.++|+++|.+. ++| ..+.++..
T Consensus 370 ~h~~~a~~l~~~y~~~~~L~~ig~y~-G~d~l~d~a~~~ 407 (466)
T TIGR01040 370 DHSDVSNQLYACYAIGKDVQAMKAVV-GEEALSSEDLLY 407 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCCHHHHHH
Confidence 45677899999999999999999998 665 44444443
No 68
>PF15219 TEX12: Testis-expressed 12
Probab=33.44 E-value=1.6e+02 Score=22.28 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCC
Q psy6460 86 GAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPF 140 (198)
Q Consensus 86 ~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~ 140 (198)
.+......+++.-++..|.+.=.=-.-. ...-.++.|.+++-++.|++||.|..
T Consensus 31 ek~l~d~skEinlmls~yA~ilSEraav-d~syi~eiD~lfkEA~~lEnfLkqkr 84 (100)
T PF15219_consen 31 EKDLNDMSKEINLMLSTYAKILSERAAV-DASYITEIDGLFKEANALENFLKQKR 84 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888899887642221111 01223577889999999999999974
No 69
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=29.40 E-value=91 Score=29.68 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHhc
Q psy6460 89 HYNIARGVQKILQDYKSLQDIIAILGMDELSE-EDKLTVARARKIQRFLS 137 (198)
Q Consensus 89 ~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d-~~~~~l~~~~~i~~fL~ 137 (198)
..+......++++.|++.++|+++|.+. ++| ..+.++...+.=+.|+.
T Consensus 359 ~~~~~~~a~~l~~~y~~~~~L~~i~~~~-G~d~l~d~~~~~~~~~~~i~~ 407 (458)
T TIGR01041 359 REDHKDVSDQLYAAYAEGRDLRGLVAIV-GEEALSERDRKYLKFADLFER 407 (458)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCCHHHHHHHHHHHHHHH
Confidence 3467778899999999999999999998 664 66776666554444543
No 70
>PLN02729 PSII-Q subunit
Probab=26.45 E-value=1.1e+02 Score=26.36 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHhcCCCccchhhc
Q psy6460 91 NIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQPFQVAEVFT 147 (198)
Q Consensus 91 ~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL~Q~~~~~d~ft 147 (198)
+++.++|+.=..-..+++|| +.++ -..+.+.-++. .||+|+.+.+-+.+
T Consensus 118 ~aa~RiK~sA~dLl~vKdLI---d~~s-----W~yVq~~LRLKAsyL~yDL~tvIssk 167 (220)
T PLN02729 118 GRMYRVKKYAFDLLALEDLI---GPDT-----LNYVRKYLRLKSTFMYYDFDKLISAA 167 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhh---Ccch-----HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 66667766655556666665 2222 24556665665 99999987544444
No 71
>PF05484 LRV_FeS: LRV protein FeS4 cluster; InterPro: IPR008665 This iron sulphur cluster is found at the N terminus of some proteins containing leucine-repeat variant (LRV) repeats (IPR004830 from INTERPRO). These proteins have a two-domain structure, composed of a small N-terminal domain containing a cluster of four Cys residues that houses the 4Fe:4S cluster, and a larger C-terminal domain containing the LRV repeats []. Biochemical studies revealed that the 4Fe:4S cluster is sensitive to oxygen, but does not appear to have reversible redox activity.; PDB: 1LRV_A.
Probab=23.29 E-value=48 Score=22.78 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCCccchh
Q psy6460 127 ARARKIQRFLSQPFQVAEV 145 (198)
Q Consensus 127 ~~~~~i~~fL~Q~~~~~d~ 145 (198)
..+++|++|++.|+..++.
T Consensus 38 ryaRrIdRFF~~NP~lA~~ 56 (57)
T PF05484_consen 38 RYARRIDRFFRWNPDLADD 56 (57)
T ss_dssp S-HHHHHHHHHH-GGGGGG
T ss_pred hHHHHHHHHHHhChHhhhc
Confidence 5688999999999865544
No 72
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=22.58 E-value=1.5e+02 Score=28.21 Aligned_cols=46 Identities=7% Similarity=-0.003 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHhcCCCCC-hHHHHHHHHHHHHHHHh
Q psy6460 90 YNIARGVQKILQDYKSLQDIIAILGMDELS-EEDKLTVARARKIQRFL 136 (198)
Q Consensus 90 ~~~a~~~r~lla~y~e~~~li~lgg~d~l~-d~~~~~l~~~~~i~~fL 136 (198)
.+......++++.|++.++|+++|.+. ++ +..+.++...+.-+.+.
T Consensus 362 ~~~~~~a~~l~~~y~~~~~l~~~~~~~-G~~~l~d~~~~~~~~~~~~~ 408 (460)
T PRK04196 362 EDHKDVANQLYAAYARGKDLRELAAIV-GEEALSERDRKYLKFADAFE 408 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCCHHHHHHHHHHHHHH
Confidence 446667889999999999999999998 54 46777777665544443
No 73
>KOG0563|consensus
Probab=21.22 E-value=22 Score=34.04 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCccchhhcCCCCcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHHh
Q psy6460 127 ARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETL 195 (198)
Q Consensus 127 ~~~~~i~~fL~Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~ 195 (198)
+...++++|+.+..+ +.|+++..-.+++.-..+.+.-.+.- . ...++++..-.+.|.....++
T Consensus 82 ~~~~k~~~F~~~~sY----~~G~YD~~e~f~~Ln~~i~~~e~~~~-~-~a~RiFYlalPPsvy~~V~~~ 144 (499)
T KOG0563|consen 82 NCGEKLEDFLKRVSY----VSGQYDTAEGFQELNKHIEEHEKEAN-S-EANRIFYLALPPSVYVDVAKN 144 (499)
T ss_pred hHhhhHHHHHHHhee----cCCCCCCHHHHHHHHHHHHHHhhccc-c-ccceEEEEecChHHHHHHHHH
Confidence 777889999999876 34555566566555555555443332 2 233444444445555554433
No 74
>KOG3062|consensus
Probab=20.93 E-value=57 Score=28.91 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=34.3
Q ss_pred cccccCCCCccCCCCCCCC------------CCcceecceeEEEecCCCCCCcccccccccc
Q psy6460 2 DFNASKSWFCIIGYQPDCL------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHL 51 (198)
Q Consensus 2 ~~~~l~~~P~~~GYp~~vf------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~il 51 (198)
.||.-.+-|+..||++.+| +.-== +-+++|++ |+.+.|+.+-....+
T Consensus 117 ~~Ns~~~~p~e~gy~~e~le~L~~RyEeP~s~NRWD-sPLf~ll~--~~~~~~~~~I~~al~ 175 (281)
T KOG3062|consen 117 EWNSEREDPGEDGYDDELLEALVQRYEEPNSRNRWD-SPLFTLLP--DVITLPIDDILKALF 175 (281)
T ss_pred HhcccCCCCCCCCCCHHHHHHHHHHhhCCCcccccc-CcceEEec--ccCCCcHHHHHHHHh
Confidence 3788889999999999999 11111 44677776 788899887666555
No 75
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=20.47 E-value=1.6e+02 Score=24.52 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCccchhhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 125 TVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 125 ~l~~~~~i~~fL~Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
.|++-++|.+.||++.. +.++|.+...-|.++++
T Consensus 2 LLeKtRkIN~lLQ~~~~----------~~v~F~~ia~vL~dvl~ 35 (177)
T PF06018_consen 2 LLEKTRKINRLLQKSAG----------EPVDFNDIAEVLSDVLE 35 (177)
T ss_dssp HHHHHHHHHHHHHSHTT----------SS--HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhcCC----------CCCCHHHHHHHHHHhhc
Confidence 57888999999999853 78999999999999987
Done!