Query psy6460
Match_columns 198
No_of_seqs 157 out of 1432
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 18:29:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fx0_B ATP synthase beta chain 100.0 1.4E-58 4.8E-63 429.8 13.0 191 5-196 288-491 (498)
2 2ck3_D ATP synthase subunit be 100.0 1.4E-57 4.8E-62 421.7 16.3 191 5-196 275-478 (482)
3 1sky_E F1-ATPase, F1-ATP synth 100.0 5.9E-57 2E-61 417.3 13.8 191 5-196 267-470 (473)
4 3vr4_D V-type sodium ATPase su 100.0 1.4E-44 4.7E-49 333.6 14.0 170 5-192 270-460 (465)
5 2c61_A A-type ATP synthase non 100.0 4E-44 1.4E-48 331.2 16.6 171 4-192 270-461 (469)
6 2r9v_A ATP synthase subunit al 100.0 2.7E-44 9.3E-49 334.8 14.2 161 5-179 289-466 (515)
7 3oaa_A ATP synthase subunit al 100.0 2.9E-44 9.8E-49 334.1 11.9 161 5-179 276-464 (513)
8 2qe7_A ATP synthase subunit al 100.0 2.3E-44 8E-49 334.7 10.3 161 5-179 276-453 (502)
9 2ck3_A ATP synthase subunit al 100.0 3.5E-44 1.2E-48 334.0 11.3 161 5-179 284-461 (510)
10 1fx0_A ATP synthase alpha chai 100.0 3.6E-44 1.2E-48 333.8 10.7 161 5-179 277-454 (507)
11 3gqb_B V-type ATP synthase bet 100.0 8.9E-44 3E-48 328.1 11.1 169 5-192 273-462 (464)
12 3mfy_A V-type ATP synthase alp 100.0 8.4E-43 2.9E-47 327.5 8.0 157 5-168 346-529 (588)
13 3gqb_A V-type ATP synthase alp 100.0 5.4E-43 1.9E-47 328.6 5.4 156 5-168 340-521 (578)
14 3vr4_A V-type sodium ATPase ca 100.0 1.2E-42 4.1E-47 327.3 7.3 156 5-168 351-534 (600)
15 2obl_A ESCN; ATPase, hydrolase 100.0 4.4E-34 1.5E-38 254.7 7.3 151 5-167 182-346 (347)
16 3l0o_A Transcription terminati 100.0 2.9E-33 9.8E-38 254.5 7.7 113 5-120 284-411 (427)
17 3ice_A Transcription terminati 100.0 4.1E-33 1.4E-37 253.6 5.2 110 5-117 283-407 (422)
18 2dpy_A FLII, flagellum-specifi 100.0 1.1E-30 3.9E-35 239.1 5.3 152 5-168 269-436 (438)
19 2gx5_A GTP-sensing transcripti 31.5 65 0.0022 25.4 4.8 37 123-169 11-47 (170)
20 1rfy_A TRAM protein;, transcri 28.8 1.1E+02 0.0039 22.3 5.3 36 82-117 62-97 (102)
21 2hjd_A Quorum-sensing antiacti 28.7 1.1E+02 0.0039 22.3 5.3 36 82-117 62-97 (102)
22 4aq4_A SN-glycerol-3-phosphate 23.4 3.1E+02 0.01 22.4 8.4 112 85-198 297-419 (419)
No 1
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=1.4e-58 Score=429.80 Aligned_cols=191 Identities=68% Similarity=0.984 Sum_probs=181.7
Q ss_pred ccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460 5 ASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 71 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID 71 (198)
++||||+++||||||| ++||| |+||||++|+||++||||+++++||||||+|||+||++|||||||
T Consensus 288 ~lge~Ps~~GYpp~l~~~l~~L~ERag~~~~GSI-T~i~tV~v~~dD~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID 366 (498)
T 1fx0_B 288 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSI-TSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVD 366 (498)
T ss_dssp HHTCCCCGGGCCTTHHHHHHHTSSSSSCCTTCEE-CCEEEEECGGGCSSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBC
T ss_pred hcCCCCccccCCchhhhHHHHHHHhccCCCCCce-eeeEEEEccCCCcCCcchHHHHHhhCceEEehhhHHhCCCCceec
Confidence 6899999999999999 67999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCCC
Q psy6460 72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAG 151 (198)
Q Consensus 72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~~ 151 (198)
|+.|+||+|++.+++++|+++++++|++|++|+++++||+++|+++++++++.+|+++++|++||+|++++++.||+.++
T Consensus 367 ~l~S~SR~~~~~i~~~~h~~~a~~lr~~la~y~el~~li~i~G~d~ls~~d~~~l~~~~~i~~fL~Q~~~v~e~ft~~~g 446 (498)
T 1fx0_B 367 PLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPG 446 (498)
T ss_dssp SSSCCBTTCSTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCSCC
T ss_pred cccccccCCCcccCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCCC
Confidence 99999999977799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHHhh
Q psy6460 152 KLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLA 196 (198)
Q Consensus 152 ~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~~ 196 (198)
+.+++++|+..|.+|++|++|++||++|||+|+|+|+++|++++.
T Consensus 447 ~~v~~~~t~~~l~~il~g~~d~~pe~~~~~~g~~~~~~~~~~~~~ 491 (498)
T 1fx0_B 447 KYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLE 491 (498)
T ss_dssp CCCCHHHHHHHHHTTTTTTTSSSCGGGTTTCSSSGGGCC------
T ss_pred cccCHHHHHHHHHHHhcCcccCCCHHHhhcCCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998764
No 2
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=1.4e-57 Score=421.75 Aligned_cols=191 Identities=84% Similarity=1.205 Sum_probs=186.4
Q ss_pred ccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460 5 ASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 71 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID 71 (198)
++||||+++||||+|| ++||| |+||||++|+||++||||+++++|+||||+|||+||++|||||||
T Consensus 275 ~lge~P~~~GYpp~l~~~l~~l~ERag~~~~GSI-T~i~tv~v~~dD~tdPi~d~~~~i~dG~ivLsr~La~~giyPAID 353 (482)
T 2ck3_D 275 LLGRIPSAVGYQPTLATDMGTMQERITTTKKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 353 (482)
T ss_dssp GGTCCCCGGGCCTTHHHHHHHHHTTSSCCSSCCE-EEEEEEECGGGCTTSHHHHHHGGGCSEEEEBCHHHHTTTCSSCBC
T ss_pred hcCCCCccccCchhHHHHhHHHHHhhcCCCCCce-eeeEEEEecCCCCCCccHHHHHHhcCeEEEEcHHHHhCCCCCccC
Confidence 7899999999999999 67999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCCC
Q psy6460 72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAG 151 (198)
Q Consensus 72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~~ 151 (198)
|+.|+||+|++.+++++|+++++++|++|++|+++++|++++|+++++++++.+|+++++|++||+|++++++.||+.++
T Consensus 354 vl~S~SR~~~~~i~~~~~~~~a~~lr~~la~y~el~~li~i~G~~~l~~~d~~~l~~~~~i~~fL~Q~~~v~~~f~~~~g 433 (482)
T 2ck3_D 354 PLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLG 433 (482)
T ss_dssp TTSCEETTCSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTCCCCGGGHHHHSSCC
T ss_pred cccccccCCCcccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCcc
Confidence 99999999965789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHHhh
Q psy6460 152 KLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLA 196 (198)
Q Consensus 152 ~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~~ 196 (198)
+.+++++|+..|.+|++|++|++||++|||+|+|+|+.+|++++.
T Consensus 434 ~~~~~~~t~~~l~~il~g~~d~~pe~~~~~~g~~~~~~~~~~~~~ 478 (482)
T 2ck3_D 434 KLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 478 (482)
T ss_dssp CCCCHHHHHHHHHHHHTTTTTTSCGGGGTTCSSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhcccccCCCHHHhcCcCcHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999998874
No 3
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=5.9e-57 Score=417.33 Aligned_cols=191 Identities=65% Similarity=0.968 Sum_probs=185.8
Q ss_pred ccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460 5 ASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 71 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID 71 (198)
++||||+++||||||| ++||| |+||||++|+||++||||+++++|+||||+|||+||++|||||||
T Consensus 267 ~~ge~P~~~GYp~~~~~~l~~l~ERa~~~~~GSI-T~i~tv~~~~dD~~dpi~~~~~~i~dg~ivLsr~La~~g~yPAId 345 (473)
T 1sky_E 267 LLGRMPSAIGYQPTLATEMGQLQERITSTAKGSI-TSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVD 345 (473)
T ss_dssp HHTCCCCGGGCCTTHHHHHHHHHTTSSCBSSCEE-EEEEECCCSTTCSSSHHHHHHHTTCSEEEEBCTTHHHHTCSSCBC
T ss_pred hcCCCCccccCCchhhhHHHHHHHHhcCCCCCce-EEEEEEEecCCCCCCcchHHHHhhcCceEEecHHHHhCCCCCccc
Confidence 6899999999999999 67999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCCC
Q psy6460 72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAG 151 (198)
Q Consensus 72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~~ 151 (198)
|+.|+||+|++.+++++|+++++++|++|++|+++++|++++|+++++++++.+++++++|++||+|++++++.||+.++
T Consensus 346 ~l~S~SR~~~~~~~~~~~~~~a~~lr~~la~y~e~~~li~i~g~~~ls~~d~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~ 425 (473)
T 1sky_E 346 PLVSTSRALAPEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQPG 425 (473)
T ss_dssp TTTCCBTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSCCC
T ss_pred cccccccccchhcCCHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccCCHHHHHHHHHHHHHHHHHcCCchHhhhhhccCC
Confidence 99999999965688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHHhh
Q psy6460 152 KLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLA 196 (198)
Q Consensus 152 ~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~~ 196 (198)
+.+++++|+..|++|+.|++|++|+++|||+|+|+|+++|++++.
T Consensus 426 ~~~~~~~t~~~l~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 470 (473)
T 1sky_E 426 SYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAMG 470 (473)
T ss_dssp CCCCHHHHHHHHHHHHTTTTTTSCGGGSTTBSSSHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHhcccccCCCHHHhcccCCHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999998874
No 4
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=1.4e-44 Score=333.56 Aligned_cols=170 Identities=24% Similarity=0.304 Sum_probs=154.6
Q ss_pred ccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
++||||+++||||||| ++||| |+||||++||||++|||++++++|+||||+|||+||++|||||
T Consensus 270 ~lge~P~~~GYp~~vf~~l~~l~ERAg~~~~~~GSI-T~i~tv~~~~dD~~~pI~~~~~~i~dg~ivLsr~La~~g~yPA 348 (465)
T 3vr4_D 270 ARREVPGRRGYPGYLYTNLATLFERAGRIRGLKGSV-TQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPP 348 (465)
T ss_dssp HTTCCCCGGGSCTTHHHHHHHHHTSCEEETTCSCEE-EEEEEEECGGGCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSC
T ss_pred hcCCCCccccCCchHHHHhHHHHHhhhccCCCCCcE-EEEEEEEecCCCcccchhHHHhhhcCeEEEEcHHHHhCCCCCC
Confidence 6899999999999999 36999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHH-HHHhcCCCccc
Q psy6460 70 VDPLDSTSRIMDPNIIG-----AEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKI-QRFLSQPFQVA 143 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~-----~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i-~~fL~Q~~~~~ 143 (198)
|||+.|+||+| +.+++ ++|+++|++++++|++|++++++++++|.++++++++..+++++++ ++||+|+++
T Consensus 349 Idvl~S~SR~m-~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~~~-- 425 (465)
T 3vr4_D 349 IDVLPSLSRLK-DKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFY-- 425 (465)
T ss_dssp BCTTTCEETTG-GGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHTTCCCTT--
T ss_pred CCccccchhcc-hhhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhHHHHHHHhCCCCC--
Confidence 99999999999 56666 8999999999999999999999999999999999999999999998 599999987
Q ss_pred hhhcCCCCcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHH
Q psy6460 144 EVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKA 192 (198)
Q Consensus 144 d~ft~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~ 192 (198)
+.+++++++..+|+++. .+|.++..-+ -++++.|+
T Consensus 426 --------e~~~~~~~~~~l~~~l~----~~p~~~~~~~--~~~~~~~~ 460 (465)
T 3vr4_D 426 --------TNRTITETLDLGWELLA----MLPRTELKRI--KDDLLDKY 460 (465)
T ss_dssp --------CCCCHHHHHHHHHHHHT----TSCTTTCTTS--CHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHh----hCCHHHHHHH--HHHHHHHh
Confidence 79999999999999986 5666555322 15566665
No 5
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=4e-44 Score=331.19 Aligned_cols=171 Identities=25% Similarity=0.320 Sum_probs=155.3
Q ss_pred cccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCC
Q psy6460 4 NASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 68 (198)
Q Consensus 4 ~~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yP 68 (198)
-++||||+++||||++| ++||| |+||||++|+||++|||++++++|+||||+|||+||++||||
T Consensus 270 ~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~~~~GSI-T~i~~v~~~~dD~~dPI~~~~~~i~dg~ivLsr~La~~g~yP 348 (469)
T 2c61_A 270 AARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGSV-TQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYP 348 (469)
T ss_dssp GGTTCCTTSTTCCTHHHHHHHHHHTSCEEBTTSSCEE-EEEEEEECCSCTTTSCCCCCGGGGTTEEEEBCHHHHHTTCSS
T ss_pred HhcCCCCcccCcCchhhhhhhhHHhhccccCCCCCce-eeeeeeecCCCCcCcchHHHHhhccCcEEEEcHHHHhCCCCC
Confidence 37899999999999999 46999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHH-HhcCCCcc
Q psy6460 69 AVDPLDSTSRIMDPNI-----IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQPFQV 142 (198)
Q Consensus 69 AID~l~S~SR~~~~~i-----~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~-fL~Q~~~~ 142 (198)
||||+.|+||+| +.+ ++++|++++++++..|++|++++++++++|+++++|+++.+++++++|++ ||+|+++
T Consensus 349 AIdvl~S~SR~~-~~~ig~~~~~~~~~~~a~~l~~~l~~~~eL~~i~~~~G~~~l~d~~~~~l~~~~~i~~~fL~Q~~~- 426 (469)
T 2c61_A 349 PINVLPSLSRLM-NSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRN- 426 (469)
T ss_dssp CBCTTTCEETTG-GGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTTCCCTT-
T ss_pred ccCccccccccc-hhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 999999999999 455 89999999999999999999999999999999999999999999999995 9999987
Q ss_pred chhhcCCCCcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHH
Q psy6460 143 AEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKA 192 (198)
Q Consensus 143 ~d~ft~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~ 192 (198)
+.+++++++..+++++. .+|.+.+..+ -+++++++
T Consensus 427 ---------~~~~~~et~~~l~~~l~----~~~~~~~~~~--~~~~~~~~ 461 (469)
T 2c61_A 427 ---------ENRTIEDTLEIGWQILT----HLPENQLGRI--DNKYIQKY 461 (469)
T ss_dssp ---------CCCCHHHHHHHHHHHHT----TSCGGGCTTS--CHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHH----hCCHHHHHHH--HHHHHHHH
Confidence 68999999999999874 6666655333 24555554
No 6
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2.7e-44 Score=334.77 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=153.2
Q ss_pred ccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCC
Q psy6460 5 ASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 67 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~y 67 (198)
+++|||+++||||+|| ++||| |+||||++++||++|||++++++|+||||+|||+||++|||
T Consensus 289 ~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~~~~GSI-Tal~~v~~~~~D~s~pI~~~~~si~DGqI~Lsr~La~~g~y 367 (515)
T 2r9v_A 289 LMRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSL-TALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQR 367 (515)
T ss_dssp TSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTTTTSCEE-EEEEEEEESTTCTTSHHHHHHHHTSSEEEEBCHHHHHHTCS
T ss_pred hcCCCCCcccCChhHHHHhHHHHHHHhhccccCCCcce-EEeeeeeccCCCccccchhhhccccceEEEEchHHHhCCCC
Confidence 6899999999999999 25999 99999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 68 PAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 68 PAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
|||||+.|+||+| +.++.++|+++++++|++|++|+|+++++++| +.++++++.+|+++++|++||+|+++
T Consensus 368 PAIdvl~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~el~~~~~~G--~~l~~~~~~~l~~~~~i~~fL~Q~~~------ 438 (515)
T 2r9v_A 368 PAINVGLSVSRVG-GSAQIKAMKQVAGMLRIDLAQYRELETFAQFA--TELDPATRAQIIRGQRLMELLKQEQY------ 438 (515)
T ss_dssp SCBCTTTCEEGGG-TTTSCHHHHHHHHHHHHHHHHHHHHHTTGGGC--SCCCHHHHHHHHHHHHHHHHTCCCTT------
T ss_pred CeeccccccccCC-cccCCHHHHHHHHHHHHHHhhhhHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhcCCCC------
Confidence 9999999999999 68899999999999999999999999999995 46888999999999999999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 148 GHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+++++++++..|+++..|.+|++|.+..
T Consensus 439 ----~~~~~~e~~~~l~~~~~g~ld~i~~~~i 466 (515)
T 2r9v_A 439 ----SPMPVEEQVVVLFAGVRGYLDDLPVEEV 466 (515)
T ss_dssp ----CCCCHHHHHHHHHHHHTTTTTTSCGGGH
T ss_pred ----CCCCHHHHHHHHHHHHhhhhccccHHHH
Confidence 6899999999999999999999997553
No 7
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=2.9e-44 Score=334.11 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=153.2
Q ss_pred ccCCCCccCCCCCCCC-------------C---------------CcceecceeEEEecCCCCCCccccccccccCcEEE
Q psy6460 5 ASKSWFCIIGYQPDCL-------------K---------------RFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTV 56 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-------------~---------------~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~iv 56 (198)
+++|||+++||||+|| . +||| |+||+|++++||++||||+++++|+||||+
T Consensus 276 ~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~~GSI-Tal~~V~~~~dD~s~pIp~~~~si~DGqIv 354 (513)
T 3oaa_A 276 LLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSL-TALPIIETQAGDVSAFVPTNVISITDGQIF 354 (513)
T ss_dssp HTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSCCEEE-EECCEEECGGGCCSSHHHHHHHHHSSEEEE
T ss_pred hcCCCCcccCCCchhhhhcchHHHHHhhcccccchhccccccCCCCcce-EEEEEEEcCCCCccCcchHhhhccCCeEEE
Confidence 6899999999999999 1 6899 999999999999999999999999999999
Q ss_pred eeHHHHhcCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q psy6460 57 LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFL 136 (198)
Q Consensus 57 Lsr~La~~g~yPAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL 136 (198)
|||+||++||||||||+.|+||+| +.++.++|+++|+++|++|++|+|+++++++| +.++++++.+|+++++|++||
T Consensus 355 Lsr~La~~giyPAIdvl~SvSRv~-~~~~~~~~~~va~~lr~~la~y~el~~~~~~g--~~ld~~~~~~l~~~~~i~~fL 431 (513)
T 3oaa_A 355 LETNLFNAGIRPAVNPGISVSRVG-GAAQTKIMKKLSGGIRTALAQYRELAAFSQFA--SDLDDATRKQLDHGQKVTELL 431 (513)
T ss_dssp ECHHHHTTSCCSCBCTTTCEESSG-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTC--CSCCHHHHHHHHHHHHHHHHT
T ss_pred EehhHHhCCCCCccCccccccccC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 68889999999999999999999999999996 468889999999999999999
Q ss_pred cCCCccchhhcCCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 137 SQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 137 ~Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+|+.+ +++++++++..|+.+..|.+|++|++..
T Consensus 432 ~Q~~~----------~~~~~~e~~~~l~a~~~g~ld~~~~~~~ 464 (513)
T 3oaa_A 432 KQKQY----------APMSVAQQSLVLFAAERGYLADVELSKI 464 (513)
T ss_dssp CCCSS----------CCCCTTHHHHHHHHHHSCTTTTTCCHHH
T ss_pred CCCCC----------CCCCHHHHHHHHHHHhcCCCccCCHHHH
Confidence 99987 6899999999999999999999998654
No 8
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=2.3e-44 Score=334.71 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=152.7
Q ss_pred ccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCC
Q psy6460 5 ASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 67 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~y 67 (198)
+++|||+++||||++| ++||| |+||+|++++||++|||++++++|+||||+|||+||++|||
T Consensus 276 ~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~~~GSI-Tal~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~g~~ 354 (502)
T 2qe7_A 276 LLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSL-TALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVR 354 (502)
T ss_dssp TTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTTTCCEE-EEEEEEECSTTCCSSHHHHHHHTTSSEEEEECHHHHTTTCS
T ss_pred hcCCCCccCCCCchHHHHHHHHHHhhhcccccCCCcce-eEEEEEEccCCCcccchhHHHhhhcCcEEEEehhHhhCCCC
Confidence 6899999999999999 25999 99999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 68 PAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 68 PAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
|||||+.|+||+| +.++.++|+++++++|++|++|+++++++++| +.++++++.+|+++++|++||+|+++
T Consensus 355 PAIdvl~S~SRv~-~~~~~~~~~~~a~~lr~~la~y~el~~~~~~G--~~l~~~~~~~l~~~~~i~~fL~Q~~~------ 425 (502)
T 2qe7_A 355 PAVNVGISVSRVG-GAAQIKAMKKVAGTLRLDLAQYRELQAFAQFG--SDLDKATQAKLNRGERTVEILKQDEH------ 425 (502)
T ss_dssp SCBCTTTCEESSG-GGGSCHHHHHHHHHHHHHHHHHHHGGGSTTCC--CCTTTTTTTTHHHHHHHHHHHCCCTT------
T ss_pred ceeCcccccccCC-CccCCHHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhCCCCC------
Confidence 9999999999999 68889999999999999999999999999985 36888899999999999999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 148 GHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+++++++++..++++..|.+|++|.+..
T Consensus 426 ----~~~~~~~~~~~l~~~~~g~l~~i~~~~i 453 (502)
T 2qe7_A 426 ----KPMPVEEQVISIYAVTNGFMDDIPVEDV 453 (502)
T ss_dssp ----CCCCHHHHHHHHHHHHTTTTTSSCSTTH
T ss_pred ----CCCCHHHHHHHHHHHHhhhhcCCCHHHH
Confidence 6899999999999999999999997544
No 9
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=3.5e-44 Score=334.04 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=153.1
Q ss_pred ccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCC
Q psy6460 5 ASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 67 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~y 67 (198)
+++|||+++||||+|| ++||| |+||+|++++||++|||++++++|+||||+|||+||++|||
T Consensus 284 ~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~~~~GSI-Tal~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~gi~ 362 (510)
T 2ck3_A 284 LLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSL-TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 362 (510)
T ss_dssp HTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGGGTSCEE-EEEEEEECSTTCTTSHHHHHHHHHSSEEEEBCHHHHHHTCS
T ss_pred hcCCCCccCCcCchHHHhhHHHHHhhhcccccCCCcce-eEeeeeccCCCCccccchHhhhcccceEEEEehhHhhCCCC
Confidence 6899999999999999 26999 99999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 68 PAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 68 PAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
|||||+.|+||+| +.++.++|+++++++|++|++|+++++++++| +.++++++.+|+++++|++||+|+++
T Consensus 363 PAIdvl~SvSRv~-~~~~~~~~~~~a~~lr~~la~y~el~~~~~~G--~~l~~~~~~~l~~~~~i~~fL~Q~~~------ 433 (510)
T 2ck3_A 363 PAINVGLSVSRVG-SAAQTRAMKQVAGTMKLELAQYREVAAFAQFG--SDLDAATQQLLSRGVRLTELLKQGQY------ 433 (510)
T ss_dssp SCBCTTTCEESSG-GGGSCHHHHHHHHHHHHHHHHHHHHGGGSSSC--SSSCHHHHHHHHHHHHHHHTTCCCSS------
T ss_pred Ccccchhcccccc-cccCCHHHHHHHHHHHHHHHhhhHHHHHHHhc--CCCCHHHHHHHHHhHHHHHHhcCCCC------
Confidence 9999999999999 68899999999999999999999999999985 46888999999999999999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 148 GHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+++++++++..++++..|.+|++|.+..
T Consensus 434 ----~~~~~~~~~~~l~~~~~g~l~~i~~~~i 461 (510)
T 2ck3_A 434 ----SPMAIEEQVAVIYAGVRGYLDKLEPSKI 461 (510)
T ss_dssp ----CCCCHHHHHHHHHHHHTTSSTTSCGGGH
T ss_pred ----CCCCHHHHHHHHHHHHhhhhcCCCHHHH
Confidence 6899999999999999999999997544
No 10
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=3.6e-44 Score=333.77 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=152.9
Q ss_pred ccCCCCccCCCCCCCC-----------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCC
Q psy6460 5 ASKSWFCIIGYQPDCL-----------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 67 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~y 67 (198)
+++|||+++||||++| ++||| |+||||++|+||++|||++++++|+||||+|||+||++|||
T Consensus 277 ~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~~~GSI-Tal~~v~~~~~D~s~pI~~~~~si~DgqIvLsr~La~~g~y 355 (507)
T 1fx0_A 277 LLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSM-TALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIR 355 (507)
T ss_dssp HTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTTTSCEE-EECCEEECSTTCTTSHHHHHHHTTSSCBCCCCSSSSSSSCS
T ss_pred hcCCCCccccCCchHhhhhHHHHHhhhhccccCCCcce-eeeeeeeccCCCcccchHHHHHhhcCcEEEEehhHhhCCCC
Confidence 6899999999999999 25999 99999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhc
Q psy6460 68 PAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFT 147 (198)
Q Consensus 68 PAID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft 147 (198)
|||||+.|+||+| +.++.++|+++++++|++|++|+++++++++| +.++++++.+|+++++|++||+|+++
T Consensus 356 PAIdvl~S~SR~~-~~~~~~~~~~~a~~lr~~la~y~el~~~~~~G--~~l~~~~~~~l~~~~~i~~fL~Q~~~------ 426 (507)
T 1fx0_A 356 PAINVGISVSRVG-SAAQIKAMKKVAGKLKLELAQFAELEAFAQFA--SDLDKATQNQLARGQRLRELLKQPQS------ 426 (507)
T ss_dssp SCCCTTTCCCTTG-GGGSCHHHHHHHHHHHHHHHHHHHHTTTGGGC--SSCCHHHHHHHHHHHHHHHHHCCCTT------
T ss_pred Cccchhhhhcccc-ccCCCHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHCCCCC------
Confidence 9999999999999 68899999999999999999999999999985 46888999999999999999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhCcCCCCccchh
Q psy6460 148 GHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179 (198)
Q Consensus 148 ~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~ 179 (198)
+++++++++..++.+..|.+|++|++..
T Consensus 427 ----~~~~~~e~~~~l~~~~~g~l~~i~~~~i 454 (507)
T 1fx0_A 427 ----APLTVEEQVMTIYTGTNGYLDSLELDQV 454 (507)
T ss_dssp ----CCCCHHHHHHHHHHHHTTSSSSSCHHHH
T ss_pred ----CCCCHHHHHHHHHHHhhchhcCCCHHHH
Confidence 6899999999999999999999996543
No 11
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=8.9e-44 Score=328.06 Aligned_cols=169 Identities=27% Similarity=0.387 Sum_probs=153.5
Q ss_pred ccCCCCccCCCCCCCC---------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL---------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf---------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
++||||+++|||||+| ++||| |+||||++|+||++|||++++++|+||||+|||+||++|||||
T Consensus 273 ~lge~P~~~GYp~~~f~~l~~l~ERag~~~~~~GSI-T~l~~v~~~~dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPA 351 (464)
T 3gqb_B 273 AREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSV-TQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPP 351 (464)
T ss_dssp TTTCCBCGGGSBTTHHHHHHHHHTSCBCBTTCSCEE-EEEEEEEETTSCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSC
T ss_pred hcCCCCccccCCchHHHHhHHHHHhhcccCCCCCcE-EEEEEEEccCCCccCchhHHHhhhcCeEEEEcHHHHhCCCCCC
Confidence 6899999999999999 36999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHhcCCCccc
Q psy6460 70 VDPLDSTSRIMDPNIIG-----AEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQPFQVA 143 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~-----~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL~Q~~~~~ 143 (198)
|||+.|+||+| +.+++ ++|+++|++++.+|++|++++++++++|.++++++|+..++++++++ +||+|+ +
T Consensus 352 Idvl~S~SR~m-~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~-- 427 (464)
T 3gqb_B 352 IDPLPSLSRLM-NNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQG-Q-- 427 (464)
T ss_dssp BCTTTCEETTG-GGTSSTTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCSCCCCSHHHHTTHHHHHHHHTTTCCT-T--
T ss_pred cCcccchhhcc-hhhcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhHHHHHHhcCCC-C--
Confidence 99999999999 57666 89999999999999999999999999999999999999999999984 999999 7
Q ss_pred hhhcCCCCcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHH
Q psy6460 144 EVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKA 192 (198)
Q Consensus 144 d~ft~~~~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~ 192 (198)
+..++++++..+|+++. .+|..+..-+ -+++++|+
T Consensus 428 --------e~~~~~~s~~~l~~ll~----~~p~~~~~~~--~~~~~~~~ 462 (464)
T 3gqb_B 428 --------QNRSIEESLQIAWALLS----MLPQGELKRI--SKDHIGKY 462 (464)
T ss_dssp --------CCCCHHHHHHHHHHHHT----TSCGGGCTTS--CHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHH----hCCHHHHhcC--CHHHHHHh
Confidence 79999999999999986 5666665333 14555553
No 12
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=8.4e-43 Score=327.53 Aligned_cols=157 Identities=22% Similarity=0.270 Sum_probs=133.6
Q ss_pred ccCCCCccCCCCCCCC--------------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhc
Q psy6460 5 ASKSWFCIIGYQPDCL--------------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAEL 64 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf--------------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~ 64 (198)
+++|||+++|||||+| ++||| |+||||++||||++|||++++++|+||||+|||+||++
T Consensus 346 ~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSI-T~i~~v~~~gdD~sdpi~~~~~~i~dg~i~Lsr~La~~ 424 (588)
T 3mfy_A 346 RLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSV-SVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARR 424 (588)
T ss_dssp -----------CCHHHHHHHHHHTTCEEEECSSSSCCEEEE-EEEEECCCTTSCSSCSHHHHHHHHCSEECCBCHHHHHT
T ss_pred hccCCCccccCCchhhhhhhHHHhccccccccCCCCCCcce-EEEEEEECCCCCCCCcchHHHHHhccCeeecCHHHHhC
Confidence 6899999999999999 15999 99999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHhc
Q psy6460 65 GIYPAVDPLDSTSRIMDP------NIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLS 137 (198)
Q Consensus 65 g~yPAID~l~S~SR~~~~------~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL~ 137 (198)
||||||||+.|+||+|++ .+++++|++++++++++|++|+++++|+++.|.|+|+++++..++++++|+ +||+
T Consensus 425 g~yPAId~l~S~SR~~~~i~~~~~~~~~~~h~~~a~~~~~~La~~~el~~ii~i~G~d~Ls~~dk~~l~~ar~i~e~fL~ 504 (588)
T 3mfy_A 425 RHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQ 504 (588)
T ss_dssp TCSSCBCTTTCEETTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcCcccchhhhcccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999942 357999999999999999999999999999999999999999999999996 8999
Q ss_pred CCCccchhhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 138 QPFQVAEVFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 138 Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
|+++. ..+.+|++++++..|..|+.
T Consensus 505 Q~~f~------~~d~~~~~~k~~~~l~~i~~ 529 (588)
T 3mfy_A 505 QDAFD------EVDTYCPPEKQVTMMRVLLN 529 (588)
T ss_dssp CCTTS------TTTTCCCHHHHHHHHHHHHH
T ss_pred CCCCC------CCccCCCHHHHHHHHHHHHH
Confidence 99653 44567788888888887754
No 13
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=5.4e-43 Score=328.55 Aligned_cols=156 Identities=21% Similarity=0.321 Sum_probs=141.3
Q ss_pred ccCCCCccCCCCCCCC------------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCC
Q psy6460 5 ASKSWFCIIGYQPDCL------------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 66 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf------------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~ 66 (198)
+++|||+++|||||+| ++||| |+||||++||||++|||++++++|+||||+|||+||++||
T Consensus 340 ~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~~~~GSI-T~i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~g~ 418 (578)
T 3gqb_A 340 RLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAV-TIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRH 418 (578)
T ss_dssp HTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTTSCEEEE-EEEEECCCTTTCTTSHHHHHHHTTCSEECCBCHHHHHHTC
T ss_pred hccCCCccccCCchhhhHHHHHHHhhcCcccCCCCCcce-EEEEEEEcCCCCCCCcchHHHhhhcCceEEECHHHHhCCC
Confidence 6899999999999999 25999 9999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCC------CCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHhcCC
Q psy6460 67 YPAVDPLDSTSRIMD------PNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQP 139 (198)
Q Consensus 67 yPAID~l~S~SR~~~------~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL~Q~ 139 (198)
||||||+.|+||+|+ +++++++|++++++++++|++|+++++|+++.|.|+|+++++..++++++|+ +||+|+
T Consensus 419 yPAId~l~S~SR~~~~v~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~~~fL~Q~ 498 (578)
T 3gqb_A 419 FPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQN 498 (578)
T ss_dssp SSCBCTTTCEESSHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTTTTTGGGCCHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCcccchhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999994 1367999999999999999999999999999999999999999999999996 799999
Q ss_pred -CccchhhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 140 -FQVAEVFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 140 -~~~~d~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
|+.+|.|| ++++++..|..|+.
T Consensus 499 ~f~~~d~~~-------~~~kq~~~l~~i~~ 521 (578)
T 3gqb_A 499 AYHEVDAYS-------SMKKAYGIMKMILA 521 (578)
T ss_dssp SSSTTTTCC-------CHHHHHHHHHHHHH
T ss_pred CCCCceecC-------CHHHHHHHHHHHHH
Confidence 44445544 67777776666643
No 14
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=1.2e-42 Score=327.31 Aligned_cols=156 Identities=22% Similarity=0.337 Sum_probs=141.0
Q ss_pred ccCCCCccCCCCCCCC--------------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhc
Q psy6460 5 ASKSWFCIIGYQPDCL--------------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAEL 64 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf--------------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~ 64 (198)
+++|||+++|||||+| ++||| |+||||++||||++|||++++++|+||||+|||+||++
T Consensus 351 ~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSI-T~i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~ 429 (600)
T 3vr4_A 351 RLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSI-TAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQK 429 (600)
T ss_dssp HTTCCBCGGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEE-EEEEEECCSSSCTTSHHHHHHHTTCCEECCBCHHHHTT
T ss_pred ccCCCCccccCCchhhhHHHHHHHhhccccccCCCCCCcce-EEEEEEECCCCCCCCcchhhhhhhccEEEEEhhhHHhC
Confidence 6899999999999999 15999 99999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCCC------CCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHhc
Q psy6460 65 GIYPAVDPLDSTSRIMD------PNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLS 137 (198)
Q Consensus 65 g~yPAID~l~S~SR~~~------~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~-~fL~ 137 (198)
||||||||+.|+||+|+ +++++++|++++++++++|++|+++++|+++.|.|+|+++++..++++++|+ +||+
T Consensus 430 giyPAId~l~S~SR~~~~l~~~~~~~~~~~h~~~a~~~~~~la~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~e~fL~ 509 (600)
T 3vr4_A 430 RHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQ 509 (600)
T ss_dssp TCSSCBCTTTCEETTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCccCcccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999994 1357899999999999999999999999999999999999999999999996 8999
Q ss_pred CC-CccchhhcCCCCcccCHHHHHHHHHHHHh
Q psy6460 138 QP-FQVAEVFTGHAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 138 Q~-~~~~d~ft~~~~~~~~l~etl~~l~~i~~ 168 (198)
|+ |+.+|.| +++++++..|..|+.
T Consensus 510 Q~~f~~~d~~-------~~~~kq~~~l~~i~~ 534 (600)
T 3vr4_A 510 QNAFDDVDTF-------TSREKQFNMLKVILT 534 (600)
T ss_dssp CCTTSTTTTC-------CCHHHHHHHHHHHHH
T ss_pred CCCcCCcccc-------CCHHHHHHHHHHHHH
Confidence 99 4444544 467777776666643
No 15
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=4.4e-34 Score=254.71 Aligned_cols=151 Identities=26% Similarity=0.368 Sum_probs=144.2
Q ss_pred ccCCCCccCCCCCCCC-----------C--CcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460 5 ASKSWFCIIGYQPDCL-----------K--RFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 71 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------~--~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID 71 (198)
++++||.+.||||+++ + +||| |+++||+++++|+++|++|++..+.||||+|++.+++.++|||||
T Consensus 182 al~~p~~t~Gldp~~~~~l~~ller~~~~~~Gsi-T~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid 260 (347)
T 2obl_A 182 ASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSI-TAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAID 260 (347)
T ss_dssp HTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEE-EEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTTCSSCBC
T ss_pred HcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCe-eeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcCCCCCcC
Confidence 4789999999999998 2 4999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHH-HHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460 72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEED-KLTVARARKIQRFLSQPFQVAEVFTGHA 150 (198)
Q Consensus 72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~-~~~l~~~~~i~~fL~Q~~~~~d~ft~~~ 150 (198)
|+.|+||++ +.+++++|+++++++|++|++|+++++++++||+++++|++ +.+++++++|++||+|+++
T Consensus 261 ~~~S~sr~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~Q~~~--------- 330 (347)
T 2obl_A 261 IGLSASRVM-HNVVTSEHLRAAAECKKLIATYKNPELLIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTK--------- 330 (347)
T ss_dssp GGGCEETTH-HHHSCHHHHHHHHHHHHHHHHCCCTHHHHTTTCCCCCSCHHHHHHHHTHHHHHHHHCCCTT---------
T ss_pred ccccccccc-cccCCHHHHHHHHHHHHHHHccHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCC---------
Confidence 999999999 68999999999999999999999999999999999998855 9999999999999999987
Q ss_pred CcccCHHHHHHHHHHHH
Q psy6460 151 GKLVPLEETIKGFSEIL 167 (198)
Q Consensus 151 ~~~~~l~etl~~l~~i~ 167 (198)
+++++++++..|++|+
T Consensus 331 -~~~~~~~~~~~~~~~~ 346 (347)
T 2obl_A 331 -DISSYEKTIESLFKVV 346 (347)
T ss_dssp -CCCCHHHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHHHh
Confidence 7999999999999986
No 16
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=99.98 E-value=2.9e-33 Score=254.55 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=106.6
Q ss_pred ccCCCCccCCCCCCCC--------------CCcceecceeEEEec-CCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL--------------KRFSIFLPAQAIYVP-ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf--------------~~GSI~T~i~tVl~~-gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
++||+|+ +||||++| ++||| |+||||+++ ||||+|||++++++|+||||+|||+||++|||||
T Consensus 284 ~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie~~GSI-T~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~giyPA 361 (427)
T 3l0o_A 284 PSGKLLT-GGVDPAALYKPKRFFGAARNTREGGSL-TIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPA 361 (427)
T ss_dssp CCSCCCS-SSCCSSCSHHHHHHHHTCEEESSSCEE-EEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTTTCSSC
T ss_pred hcCCCCC-CCcCchhhcchHHHHHhhcccCCCcce-eEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhCCCCCc
Confidence 6899999 69999999 67999 999999999 8999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCCh
Q psy6460 70 VDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSE 120 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d 120 (198)
|||+.|+||+| +.+++++|+++++++|++|++|++++++.++.+.-..+.
T Consensus 362 IDvl~S~SR~~-~~l~~~~h~~~a~~lr~~la~y~e~e~l~~ll~~~~~t~ 411 (427)
T 3l0o_A 362 INLLLSGTRRE-ELLLDEETLKKVWLLRRMLSAMTEEEGLTLILNKLSETS 411 (427)
T ss_dssp BCSTTCEETTG-GGTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCS
T ss_pred cCccccccccc-cccCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC
Confidence 99999999999 799999999999999999999999999999987544444
No 17
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=99.97 E-value=4.1e-33 Score=253.58 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=105.5
Q ss_pred ccCCCCccCCCCCCCC--------------CCcceecceeEEEec-CCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL--------------KRFSIFLPAQAIYVP-ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf--------------~~GSI~T~i~tVl~~-gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
++||+|+ +||||++| ++||| |+||||++| |||++|||++++++|+||||+|||+||++|||||
T Consensus 283 ~~Ge~ps-~Gyp~~~~~~~~rl~erA~~~~~~GSI-T~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~giyPA 360 (422)
T 3ice_A 283 ASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSL-TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPA 360 (422)
T ss_dssp CSSCBCS-SSCBHHHHHHHHHHHTTCEEESSSCEE-EEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHTTCSSC
T ss_pred hcCCCCC-CCcCHHHHhhhHHHHHhccccCCCcce-eEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhcCCCCc
Confidence 6899999 99999998 57999 999999999 9999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCC
Q psy6460 70 VDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDE 117 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~ 117 (198)
|||+.|+||+| +.+++++|+++++++|++|++|++++++..+.|.-.
T Consensus 361 IDvl~S~SR~~-~~~~~~~~~~~a~~lr~~la~~~e~~~~~~ll~~~~ 407 (422)
T 3ice_A 361 IDYNRSGTRKE-ELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 407 (422)
T ss_dssp BCTTTCEESSG-GGSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTT
T ss_pred cCccccccccc-hhhCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHhh
Confidence 99999999999 799999999999999999999999999999987543
No 18
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.96 E-value=1.1e-30 Score=239.12 Aligned_cols=152 Identities=26% Similarity=0.367 Sum_probs=144.2
Q ss_pred ccCCCCccCCCCCCCC-----------C---C-cceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCc
Q psy6460 5 ASKSWFCIIGYQPDCL-----------K---R-FSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 69 (198)
Q Consensus 5 ~l~~~P~~~GYp~~vf-----------~---~-GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPA 69 (198)
++++||.+.||||+++ + + ||| |+++||++.++|+++|++|++..+.||+|++++.+++.++|||
T Consensus 269 Al~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~Gsi-T~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~Pa 347 (438)
T 2dpy_A 269 AIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSI-TAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA 347 (438)
T ss_dssp HTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEE-EEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTTCSSC
T ss_pred HhCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcc-cceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHccCCCC
Confidence 3789999999999998 3 3 999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChH-HHHHHHHHHHHHHHhcCCCccchhhcC
Q psy6460 70 VDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEE-DKLTVARARKIQRFLSQPFQVAEVFTG 148 (198)
Q Consensus 70 ID~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~-~~~~l~~~~~i~~fL~Q~~~~~d~ft~ 148 (198)
|||+.|+||++ ..+++++|++++++++++|++|+++++++++|||++++|+ .|.++.++++|++||+|+++
T Consensus 348 idv~~s~sR~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~fl~Q~~~------- 419 (438)
T 2dpy_A 348 IDIEASISRAM-TALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEAFLQQGIF------- 419 (438)
T ss_dssp EEEEEEEETTH-HHHSCHHHHHHHHHHHHHHHHHHHGGGTSSSSCCCTTSCHHHHHHHTTHHHHHHHHCCCTT-------
T ss_pred cCCcccccccc-cccCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHcCCCCC-------
Confidence 99999999999 5789999999999999999999999999999999999884 48999999999999999987
Q ss_pred CCCcccCHHHHHHHHHHHHh
Q psy6460 149 HAGKLVPLEETIKGFSEILA 168 (198)
Q Consensus 149 ~~~~~~~l~etl~~l~~i~~ 168 (198)
+++++++++..|++|+.
T Consensus 420 ---~~~~~~~~~~~~~~~~~ 436 (438)
T 2dpy_A 420 ---ERADWEDSLQALDLIFP 436 (438)
T ss_dssp ---CCCCHHHHHHHHHHHSC
T ss_pred ---CCCCHHHHHHHHHHHHh
Confidence 79999999999999974
No 19
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=31.51 E-value=65 Score=25.42 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCCccchhhcCCCCcccCHHHHHHHHHHHHhC
Q psy6460 123 KLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAG 169 (198)
Q Consensus 123 ~~~l~~~~~i~~fL~Q~~~~~d~ft~~~~~~~~l~etl~~l~~i~~g 169 (198)
-..|++-++|...||++.. +.++|.+..+.|.+++++
T Consensus 11 ~~LL~KtRkIN~lLq~~~~----------~~v~f~eia~vLs~vL~~ 47 (170)
T 2gx5_A 11 MALLQKTRIINSMLQAAAG----------KPVNFKEMAETLRDVIDS 47 (170)
T ss_dssp HHHHHHHHHHHHHHHSCCC----------SCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCC----------CCCCHHHHHHHHHHHhCC
Confidence 3578999999999999864 789999999999999873
No 20
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=28.77 E-value=1.1e+02 Score=22.26 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCC
Q psy6460 82 PNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDE 117 (198)
Q Consensus 82 ~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~ 117 (198)
+.+-++.|.+...+.++.=++-.++..||.+.||-+
T Consensus 62 ps~~~~lh~eYi~~~ie~~AQq~~lstli~~LGyvP 97 (102)
T 1rfy_A 62 QACGGPQHIRYIEASIEMHAQMSALNTLISILGFIP 97 (102)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 466689999999999999999999999999999865
No 21
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=28.73 E-value=1.1e+02 Score=22.27 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCC
Q psy6460 82 PNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDE 117 (198)
Q Consensus 82 ~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~ 117 (198)
+.+-++.|.+...+.++.=++-.++..||.+.||-+
T Consensus 62 ps~~~~lh~eYi~~~ie~~AQq~~lstli~~LGyvP 97 (102)
T 2hjd_A 62 TAAGGEQHLEYIEAMIEMHAQMSAVNTLVGLLGFIP 97 (102)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456689999999999999999999999999999865
No 22
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=23.40 E-value=3.1e+02 Score=22.45 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHH------HHHHHHHHHHHhcCCCcc-chhhcCCC--CcccC
Q psy6460 85 IGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKL------TVARARKIQRFLSQPFQV-AEVFTGHA--GKLVP 155 (198)
Q Consensus 85 ~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~------~l~~~~~i~~fL~Q~~~~-~d~ft~~~--~~~~~ 155 (198)
.+.+|.+.|.++.+.|..-+....+....|.-+....... .+...+....++.|-... ...++... .....
T Consensus 297 ~~~~~~~aA~~fl~~l~s~e~~~~~~~~~g~~P~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (419)
T 4aq4_A 297 KDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQ 376 (419)
T ss_dssp CCHHHHHHHHHHHHHHTSHHHHHHHHHHHCCBCCBHHHHHHHHHTTHHHHSGGGGHHHHHHTSSCCCTTCSCCCCTTHHH
T ss_pred chhhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCCcHHHhhchhhhhHHhhChhHHHHHHHHHhCCCcCcccccccccHHH
Confidence 3578999999999999887777777777676554431110 111111122232221100 00111000 01111
Q ss_pred HHHH-HHHHHHHHhCcCCCCccch-hccccChHHHHHHHHHhhcC
Q psy6460 156 LEET-IKGFSEILAGKYDHLPEVA-FYMVGPIEEVVAKAETLAKS 198 (198)
Q Consensus 156 l~et-l~~l~~i~~g~~d~ip~~~-~~~~g~~~~~~~~~~~~~~~ 198 (198)
+.+. -..+.+++.|+.+ |++. --+.-.++++++++++.+|+
T Consensus 377 ~~~~~~~~~~~~~~g~~t--~e~al~~~~~~~~~~L~~y~k~~K~ 419 (419)
T 4aq4_A 377 IRVIVDEELESVWTGKKT--PQQALDTAVERGNQLLRRFEKSTKS 419 (419)
T ss_dssp HHHHHHHHHHHHHTTSSC--HHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2222 2456677878763 2332 23445567778888887775
Done!