RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6460
(198 letters)
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 114
Score = 204 bits (521), Expect = 3e-69
Identities = 75/112 (66%), Positives = 88/112 (78%)
Query: 84 IIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVA 143
I+G EHY +AR VQ+ L+ YK LQDIIAILGMDELS+EDKL V RAR+IQ FLSQ F VA
Sbjct: 2 IVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVA 61
Query: 144 EVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETL 195
E FTG G VP++ET++GF EIL GKYDHLPE F +VG IEEVV KA+ +
Sbjct: 62 EQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAM 113
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 118
Score = 202 bits (517), Expect = 2e-68
Identities = 103/118 (87%), Positives = 113/118 (95%)
Query: 80 MDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQP 139
MDPNI+G+EHY++ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV+RARKIQRFLSQP
Sbjct: 1 MDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQP 60
Query: 140 FQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAK 197
FQVAEVFTGH GKLVPL+ETIKGF +ILAG+YDHLPE AFYMVGPIEE VAKA+ LA+
Sbjct: 61 FQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 118
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 108
Score = 189 bits (483), Expect = 2e-63
Identities = 75/107 (70%), Positives = 87/107 (81%)
Query: 84 IIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVA 143
I+G EHY IA+ V++ LQ YK LQDIIAILG+DELSEED+LTVARARKI+RFLSQPF VA
Sbjct: 2 IVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVA 61
Query: 144 EVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVA 190
EVFTG GK V L ETI+GF IL+G+ D LPE AFY+VG I+E A
Sbjct: 62 EVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATA 108
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 85.8 bits (212), Expect = 4e-21
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 30 QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMD 81
+ A D++ P + D LS + GI PA++ S SR+
Sbjct: 222 PIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGS 273
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 84.7 bits (209), Expect = 1e-20
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 30 QAIYVPADDLTDPAPATTF-AHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAE 88
+ D F + LSR IAE ++PA+D S +R + E
Sbjct: 189 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE-ELLTTQE 247
Query: 89 HYNIARGVQKIL---QDYKSLQDIIAILGMDELSEE 121
++KI+ + +++ +I L M + +++
Sbjct: 248 ELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 283
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 84.1 bits (208), Expect = 2e-20
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 30 QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 80
I A D++ P + D L + GI PA++ S SR+
Sbjct: 231 PVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVG 281
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 83.3 bits (206), Expect = 4e-20
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 30 QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 79
QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI
Sbjct: 227 QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 276
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015
{Pyrococcus furiosus [TaxId: 2261]}
Length = 68
Score = 28.6 bits (64), Expect = 0.099
Identities = 8/44 (18%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 97 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPF 140
+++L+ + S++ + + EL + + + A++I+R ++ P+
Sbjct: 24 RRLLKHFGSVERVFTA-SVAELMKVEGIGEKIAKEIRRVITAPY 66
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
pernix [TaxId: 56636]}
Length = 70
Score = 27.1 bits (60), Expect = 0.42
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 97 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQ 141
++IL+ + SL+ E+S+ + + RA +I++ L P++
Sbjct: 27 ERILERFGSLERFFT-ASKAEISKVEGIGEKRAEEIKKILMTPYK 70
>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 27.4 bits (61), Expect = 0.68
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 49 AHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQD 108
L A SRA + G P + T +I+ P + IA G+ +Q ++D
Sbjct: 32 DQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELY------IAVGISGAIQHLAGMKD 85
Query: 109 ---IIAI 112
I+AI
Sbjct: 86 SKTIVAI 92
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 25.6 bits (55), Expect = 4.4
Identities = 5/35 (14%), Positives = 8/35 (22%)
Query: 32 IYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 66
+ V D + F L + I
Sbjct: 7 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASY 41
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)
{Haemophilus influenzae [TaxId: 727]}
Length = 225
Score = 25.5 bits (54), Expect = 4.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 141 QVAEVFTGHAGKLVPLEETIKGFSEILAGKY 171
VAEVF + VP I +LA ++
Sbjct: 6 NVAEVFPDMIQRSVPGYSNIITAIGMLAERF 36
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 25.0 bits (54), Expect = 4.7
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 98 KILQDYKSLQDIIAILGMDELSEEDKLTVARA 129
+ K ++D+ + G +EL + +K + +
Sbjct: 62 RARATTKKIEDLTELEGWEELEDNEKEQITQH 93
>d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 312
Score = 25.3 bits (54), Expect = 5.9
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 106 LQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGH 149
+++ + L+EED + ++ QR Q F TGH
Sbjct: 266 IKENFEVFDF-SLTEEDIAKLEESKNSQRLFLQDF-----MTGH 303
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 24.7 bits (54), Expect = 6.5
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 89 HYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLS 137
N + + K+ + + +A G+ E E+ + IQ FL
Sbjct: 93 LDNFLQVLIKVRNRHNDVVPTMA-QGVIEYKEKFGFDPFISTNIQYFLD 140
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 167
Score = 24.7 bits (54), Expect = 6.6
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 96 VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLS 137
+ I + + +A G+ E + + IQ FL
Sbjct: 106 LVTIRNRHNDVVPTMA-QGVLEYKDTYGDDPVSNQNIQYFLD 146
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 24.9 bits (53), Expect = 10.0
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 127 ARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFY 180
A+A+ I ++L + V GH L K ++ + K P+
Sbjct: 11 AKAKTINKYLGSDYVVKSSV-GHIRDLPTSGSAAKKSADSTSTKTAKKPKKDER 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.396
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 741,700
Number of extensions: 33707
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 20
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)