BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6461
(703 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 21 EEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80
E+++ NP+ + W I +N P YER + + P S + W Y++ ++K
Sbjct: 3 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIE---AEIKA 59
Query: 81 KVITDPSYEDVNNTFERSL--VFMHKMPRIWLDY-----GRFLMDQHKITQTRHVFDRAL 133
K +Y+ V F+R L V + + +L Y G+ + K+ Q +D AL
Sbjct: 60 K-----NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA---YDFAL 111
Query: 134 RALPI-TQHHRVWPLYLSFVKS 154
+ + +++W Y++F+K
Sbjct: 112 DKIGMEIMSYQIWVDYINFLKG 133
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA--LPITQHHRVWPLYLSFV 152
FE L +P L Y +L ++ TR +F+R L + LP + +W +L+F
Sbjct: 414 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473
Query: 153 KSHAVPETAVRVFRRYLKLFPEDAE 177
+ + ++V +R F E+ E
Sbjct: 474 SNIGDLASILKVEKRRFTAFREEYE 498
>pdb|2UY1|A Chain A, Crystal Structure Of Cstf-77
Length = 493
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Query: 25 LRNPFSVKHWLRYIEH--KKNAPKAIINTIYERSLKELPG---SYKLWYNYLKLRRKQVK 79
L+ +++ W+ YIE+ K + K + +YE +L + SY L+ Y+ + +
Sbjct: 41 LKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI-----EEE 95
Query: 80 GKVITDPS-YEDVNNTFERSL-VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
GK+ + + E + N + R+L M + +W D+ F ++ +KIT + V D LP
Sbjct: 96 GKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD----TLP 151
Query: 138 ITQ-----HHRVWPL 147
I Q + ++ PL
Sbjct: 152 IFQSSFQRYQQIQPL 166
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 93 NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFV 152
+T+ R++ P + + L ++ + + ++ ALR P H +
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT--HADSLNNLANIK 315
Query: 153 KSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIER 188
+ E AVR++R+ L++FPE A + S +++
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
>pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Prolyl Dipeptidyl
Aminopeptidase From Lactococcus Lactis
Length = 763
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 208 KHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYT---DQLGHLWNSLADYYIR 264
K G N Q W++ +I N DK+++ D +I GL+ + +Q + W +L + + +
Sbjct: 436 KSGDYN-QFWHDRNYLI--NTDKVKA---DVLIVHGLQDWNVTPEQAYNFWKALPEGHAK 489
Query: 265 SGLFERARDIYEEAIQTVTTVRDFTQVFDAY 295
R IY + Q++ DF++ +AY
Sbjct: 490 HAFLHRGAHIYMNSWQSI----DFSETINAY 516
>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77
Length = 493
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 21/131 (16%)
Query: 29 FSVKHWLRYIEH--KKNAPKAIINTIYERSLKELPG---SYKLWYNYLKLRRKQVKGKVI 83
+++ W+ YIE+ K + K + +YE +L + SY L+ Y+ + GK+
Sbjct: 45 YNLDLWMLYIEYVRKVSQKKFKLFEVYEFTLGQFENYWDSYGLFKEYI-----EELGKIE 99
Query: 84 TDPS-YEDVNNTFERSL-VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ- 140
+ + E + N + R+L M + +W D+ F ++ +KIT + V D LP+ Q
Sbjct: 100 DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD----TLPLFQS 155
Query: 141 ----HHRVWPL 147
+ ++ PL
Sbjct: 156 SFQRYQQIQPL 166
>pdb|1JYO|E Chain E, Structure Of The Salmonella Virulence Effector Sptp In
Complex With Its Secretion Chaperone Sicp
pdb|1JYO|F Chain F, Structure Of The Salmonella Virulence Effector Sptp In
Complex With Its Secretion Chaperone Sicp
Length = 105
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 354 VLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARL 413
VL W ++ LF K ++++ +TE ++ D K+ LH L ++G+ VND L +R+
Sbjct: 15 VLTWLGKMPLF--KNTEVVQKHTENIRVQDQKILQTFLHALTEKYGE-TAVNDALLMSRI 71
Query: 414 IFDK 417
+K
Sbjct: 72 NMNK 75
>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
pdb|2OND|B Chain B, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
Length = 308
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA--LPITQHHRVWPLYLSFV 152
FE L +P L Y +L ++ TR +F+R L + LP + +W +L+F
Sbjct: 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251
Query: 153 KSHAVPETAVRVFRRYLKLFPEDAE 177
+ + ++V +R F E+ E
Sbjct: 252 SNIGDLASILKVEKRRFTAFREEYE 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,775,664
Number of Sequences: 62578
Number of extensions: 777359
Number of successful extensions: 1885
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1883
Number of HSP's gapped (non-prelim): 10
length of query: 703
length of database: 14,973,337
effective HSP length: 106
effective length of query: 597
effective length of database: 8,340,069
effective search space: 4979021193
effective search space used: 4979021193
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)