Query psy6461
Match_columns 703
No_of_seqs 219 out of 2404
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 18:30:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2047|consensus 100.0 1.7E-89 3.6E-94 678.2 70.6 688 13-701 9-735 (835)
2 KOG1915|consensus 100.0 3.1E-56 6.7E-61 427.2 51.6 534 16-685 58-621 (677)
3 KOG0495|consensus 100.0 2.2E-45 4.9E-50 365.3 57.2 574 12-687 266-878 (913)
4 KOG1915|consensus 100.0 1.6E-43 3.4E-48 340.0 46.7 455 48-683 57-530 (677)
5 KOG0495|consensus 100.0 4.3E-34 9.2E-39 285.2 57.1 546 18-667 306-892 (913)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-33 3.2E-38 331.6 70.2 593 16-686 280-897 (899)
7 KOG2047|consensus 100.0 6.5E-35 1.4E-39 290.7 46.6 547 12-611 41-717 (835)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.4E-33 1.4E-37 326.2 68.7 598 15-690 245-867 (899)
9 PRK11447 cellulose synthase su 100.0 1.5E-30 3.2E-35 306.7 65.7 602 18-687 49-738 (1157)
10 KOG4626|consensus 100.0 6.2E-33 1.3E-37 275.3 35.6 392 21-634 106-500 (966)
11 PRK11447 cellulose synthase su 100.0 7.5E-29 1.6E-33 292.3 62.8 570 28-688 25-699 (1157)
12 KOG4626|consensus 100.0 5.8E-30 1.3E-34 254.3 39.3 449 31-669 48-500 (966)
13 KOG2002|consensus 100.0 1.6E-26 3.4E-31 242.3 50.9 567 16-699 149-754 (1018)
14 TIGR00990 3a0801s09 mitochondr 100.0 9.6E-26 2.1E-30 250.1 54.1 432 34-656 130-574 (615)
15 PRK09782 bacteriophage N4 rece 100.0 8.1E-25 1.8E-29 246.2 61.7 566 17-683 64-734 (987)
16 PRK09782 bacteriophage N4 rece 100.0 1E-23 2.2E-28 237.4 60.5 574 43-689 57-706 (987)
17 TIGR00990 3a0801s09 mitochondr 100.0 7.1E-25 1.5E-29 243.2 50.2 261 366-691 308-573 (615)
18 KOG2002|consensus 100.0 4E-24 8.6E-29 224.4 50.5 547 18-672 185-762 (1018)
19 KOG1914|consensus 100.0 5.6E-24 1.2E-28 209.3 44.5 457 21-684 10-496 (656)
20 PRK10049 pgaA outer membrane p 99.9 6.4E-24 1.4E-28 239.6 46.9 434 24-656 8-459 (765)
21 PRK15174 Vi polysaccharide exp 99.9 2.4E-23 5.1E-28 229.9 46.7 349 43-621 55-407 (656)
22 PRK10049 pgaA outer membrane p 99.9 6.9E-23 1.5E-27 231.2 44.7 420 18-624 36-463 (765)
23 PRK15174 Vi polysaccharide exp 99.9 6.1E-23 1.3E-27 226.7 42.3 341 15-585 60-407 (656)
24 PLN03077 Protein ECB2; Provisi 99.9 1.8E-21 3.8E-26 224.8 55.5 476 141-687 221-718 (857)
25 PLN03077 Protein ECB2; Provisi 99.9 2.4E-21 5.1E-26 223.7 50.7 490 30-653 221-720 (857)
26 PLN03081 pentatricopeptide (PP 99.9 1.8E-21 4E-26 219.2 48.4 454 32-652 88-556 (697)
27 KOG0547|consensus 99.9 2.4E-20 5.1E-25 181.9 39.9 238 366-672 340-583 (606)
28 PLN03081 pentatricopeptide (PP 99.9 2.6E-20 5.6E-25 209.9 45.7 432 19-618 109-558 (697)
29 COG5107 RNA14 Pre-mRNA 3'-end 99.9 8.9E-20 1.9E-24 175.8 41.5 498 2-663 13-541 (660)
30 KOG0547|consensus 99.9 4.6E-20 1E-24 179.9 38.6 239 395-696 329-573 (606)
31 PLN03218 maturation of RBCL 1; 99.9 2.8E-18 6E-23 195.1 55.1 488 39-690 379-910 (1060)
32 KOG2076|consensus 99.9 3.2E-18 6.8E-23 179.5 50.6 567 35-683 143-843 (895)
33 KOG1914|consensus 99.9 3.2E-19 7E-24 176.1 39.5 442 12-619 34-503 (656)
34 PLN03218 maturation of RBCL 1; 99.9 9E-19 2E-23 199.1 47.0 426 91-671 356-800 (1060)
35 PRK14574 hmsH outer membrane p 99.9 1.1E-17 2.4E-22 185.2 51.7 479 26-624 29-520 (822)
36 PRK14574 hmsH outer membrane p 99.9 1.7E-17 3.7E-22 183.7 45.5 447 15-587 52-519 (822)
37 KOG2076|consensus 99.9 1.3E-15 2.8E-20 160.1 53.8 608 18-684 160-890 (895)
38 PRK11788 tetratricopeptide rep 99.8 1.5E-17 3.2E-22 175.4 36.0 162 394-616 182-346 (389)
39 KOG2396|consensus 99.8 4.8E-16 1E-20 152.9 41.7 495 12-657 32-563 (568)
40 KOG1155|consensus 99.8 6.4E-16 1.4E-20 150.4 38.0 150 367-580 345-494 (559)
41 PRK11788 tetratricopeptide rep 99.8 1.7E-16 3.6E-21 167.4 36.3 289 364-684 47-342 (389)
42 KOG1070|consensus 99.8 1.5E-17 3.3E-22 180.3 28.4 260 371-693 1443-1704(1710)
43 KOG1258|consensus 99.8 1.5E-14 3.3E-19 146.9 45.1 443 11-601 12-488 (577)
44 PF13429 TPR_15: Tetratricopep 99.8 1.3E-18 2.8E-23 173.7 13.2 250 365-685 21-273 (280)
45 KOG1155|consensus 99.8 2.6E-14 5.6E-19 139.4 41.9 218 395-691 333-555 (559)
46 KOG2003|consensus 99.8 2.1E-15 4.5E-20 145.9 33.4 453 86-675 215-709 (840)
47 KOG1258|consensus 99.8 4.4E-14 9.5E-19 143.5 43.7 452 53-675 21-490 (577)
48 KOG1126|consensus 99.8 1.9E-16 4.2E-21 161.4 24.7 267 253-620 354-623 (638)
49 PF13429 TPR_15: Tetratricopep 99.8 4.3E-18 9.4E-23 169.9 12.5 263 255-653 11-277 (280)
50 KOG1127|consensus 99.7 3.9E-14 8.4E-19 149.8 39.3 510 18-682 479-1029(1238)
51 COG5107 RNA14 Pre-mRNA 3'-end 99.7 2E-14 4.4E-19 139.2 32.4 446 14-623 59-537 (660)
52 KOG1126|consensus 99.7 2.6E-15 5.6E-20 153.3 27.0 147 532-686 471-617 (638)
53 TIGR00540 hemY_coli hemY prote 99.7 3.6E-14 7.7E-19 149.1 35.1 294 361-694 93-404 (409)
54 KOG1173|consensus 99.7 6E-13 1.3E-17 133.4 39.1 473 30-623 15-524 (611)
55 TIGR00540 hemY_coli hemY prote 99.7 5.3E-14 1.1E-18 147.8 33.4 134 391-581 262-399 (409)
56 KOG1156|consensus 99.7 8.9E-12 1.9E-16 127.0 45.7 480 85-692 20-548 (700)
57 KOG0548|consensus 99.7 1.3E-13 2.9E-18 137.5 31.7 462 83-651 13-487 (539)
58 KOG1173|consensus 99.7 4.2E-14 9.2E-19 141.4 27.1 278 30-463 243-522 (611)
59 KOG4162|consensus 99.7 6E-13 1.3E-17 138.0 35.5 207 27-285 319-546 (799)
60 PRK10747 putative protoheme IX 99.7 2.8E-13 6.1E-18 141.5 33.9 223 366-656 167-393 (398)
61 KOG1070|consensus 99.7 1.9E-14 4.1E-19 156.8 24.8 248 346-653 1450-1700(1710)
62 KOG0624|consensus 99.7 1.9E-12 4.2E-17 121.6 34.4 207 366-624 169-377 (504)
63 PRK10747 putative protoheme IX 99.7 7.1E-13 1.5E-17 138.5 35.2 131 390-582 261-391 (398)
64 PRK11189 lipoprotein NlpI; Pro 99.6 1.1E-13 2.4E-18 138.3 27.1 223 366-657 40-269 (296)
65 COG3063 PilF Tfp pilus assembl 99.6 1.1E-13 2.3E-18 123.6 23.4 117 533-653 86-202 (250)
66 KOG0624|consensus 99.6 8.5E-13 1.8E-17 123.9 29.8 325 26-463 33-374 (504)
67 PRK12370 invasion protein regu 99.6 1.3E-13 2.9E-18 150.3 28.2 262 349-682 251-529 (553)
68 KOG2003|consensus 99.6 1.5E-12 3.3E-17 126.3 31.4 438 32-586 202-694 (840)
69 KOG2396|consensus 99.6 1.5E-10 3.3E-15 114.7 45.2 496 46-692 33-563 (568)
70 TIGR02521 type_IV_pilW type IV 99.6 2.5E-13 5.3E-18 132.0 25.8 203 391-653 30-232 (234)
71 KOG1127|consensus 99.6 4.9E-12 1.1E-16 134.2 36.5 379 12-457 507-911 (1238)
72 KOG4162|consensus 99.6 2.8E-11 6.2E-16 125.8 41.4 425 103-655 320-785 (799)
73 COG3063 PilF Tfp pilus assembl 99.6 2.5E-13 5.5E-18 121.3 22.5 203 392-655 35-238 (250)
74 PRK12370 invasion protein regu 99.6 1.6E-13 3.5E-18 149.6 26.1 217 406-688 275-501 (553)
75 KOG1129|consensus 99.6 2.2E-13 4.7E-18 127.0 21.8 287 349-699 176-467 (478)
76 KOG1174|consensus 99.6 8E-12 1.7E-16 120.3 32.2 375 37-637 136-518 (564)
77 KOG0548|consensus 99.6 1.2E-11 2.6E-16 123.8 34.2 445 43-614 15-486 (539)
78 PRK11189 lipoprotein NlpI; Pro 99.6 6.7E-13 1.5E-17 132.6 25.9 217 18-284 47-268 (296)
79 TIGR02521 type_IV_pilW type IV 99.6 1.8E-12 4E-17 125.9 26.2 200 430-687 31-230 (234)
80 KOG0128|consensus 99.5 8.1E-11 1.8E-15 123.3 37.6 430 18-683 100-557 (881)
81 KOG1156|consensus 99.5 1.8E-09 3.8E-14 110.6 44.3 242 32-288 9-255 (700)
82 KOG1174|consensus 99.5 1.1E-11 2.5E-16 119.3 26.6 312 22-463 186-504 (564)
83 KOG1125|consensus 99.5 1.4E-12 3E-17 131.4 16.0 194 13-284 301-530 (579)
84 COG2956 Predicted N-acetylgluc 99.4 1.1E-09 2.4E-14 102.8 32.8 171 394-620 143-314 (389)
85 KOG1125|consensus 99.4 1E-11 2.2E-16 125.3 20.7 259 366-683 299-565 (579)
86 COG2956 Predicted N-acetylgluc 99.4 9.4E-10 2E-14 103.2 31.6 273 366-674 49-329 (389)
87 KOG2376|consensus 99.4 1.1E-08 2.4E-13 103.8 41.5 448 84-657 24-491 (652)
88 KOG1129|consensus 99.4 4.8E-11 1E-15 111.6 21.3 222 366-654 237-459 (478)
89 PF05843 Suf: Suppressor of fo 99.4 3.4E-12 7.3E-17 125.8 12.7 137 514-657 2-140 (280)
90 PLN02789 farnesyltranstransfer 99.4 3.2E-10 7E-15 112.9 25.6 220 393-672 38-267 (320)
91 PF05843 Suf: Suppressor of fo 99.4 6.5E-12 1.4E-16 123.8 13.3 138 32-176 2-141 (280)
92 PLN02789 farnesyltranstransfer 99.3 1.8E-09 4E-14 107.5 27.1 233 366-666 51-313 (320)
93 cd05804 StaR_like StaR_like; a 99.3 1.8E-08 3.8E-13 104.8 35.4 315 252-692 6-339 (355)
94 PRK15359 type III secretion sy 99.3 6.7E-11 1.4E-15 104.1 14.3 108 19-137 15-123 (144)
95 TIGR03302 OM_YfiO outer membra 99.3 4.3E-10 9.3E-15 109.2 20.7 192 26-283 28-234 (235)
96 cd05804 StaR_like StaR_like; a 99.3 7.2E-09 1.6E-13 107.8 31.1 280 350-691 2-295 (355)
97 KOG1840|consensus 99.3 1.5E-09 3.3E-14 112.9 23.9 257 102-458 195-478 (508)
98 PRK10370 formate-dependent nit 99.3 1.8E-10 3.9E-15 107.0 15.5 123 44-176 53-178 (198)
99 PRK15359 type III secretion sy 99.2 1.4E-10 2.9E-15 102.1 13.2 117 50-179 13-129 (144)
100 PRK10370 formate-dependent nit 99.2 1.8E-10 3.8E-15 107.1 14.6 117 15-138 57-176 (198)
101 KOG1840|consensus 99.2 2.1E-09 4.6E-14 111.9 23.9 259 348-652 193-478 (508)
102 KOG0128|consensus 99.2 9.3E-08 2E-12 100.9 34.6 121 14-137 130-261 (881)
103 KOG2376|consensus 99.2 3.3E-07 7.1E-12 93.3 36.8 425 113-684 19-482 (652)
104 COG3071 HemY Uncharacterized e 99.2 7.9E-08 1.7E-12 93.5 30.5 295 362-697 94-398 (400)
105 PF12569 NARP1: NMDA receptor- 99.2 1.6E-07 3.5E-12 99.2 35.3 165 434-690 198-369 (517)
106 TIGR03302 OM_YfiO outer membra 99.2 3E-09 6.4E-14 103.3 20.5 202 390-654 31-233 (235)
107 PRK15179 Vi polysaccharide bio 99.2 1.6E-09 3.5E-14 118.6 19.6 151 23-183 78-229 (694)
108 COG3071 HemY Uncharacterized e 99.1 2.5E-07 5.3E-12 90.1 30.9 285 86-458 98-389 (400)
109 KOG3785|consensus 99.1 5.2E-06 1.1E-10 79.4 38.6 185 40-286 32-219 (557)
110 TIGR02552 LcrH_SycD type III s 99.1 2.9E-09 6.3E-14 93.3 15.5 112 19-138 5-117 (135)
111 PF08424 NRDE-2: NRDE-2, neces 99.1 2.2E-09 4.8E-14 108.0 16.5 151 14-172 2-184 (321)
112 KOG0550|consensus 99.1 1.6E-08 3.6E-13 98.2 21.2 69 394-462 251-319 (486)
113 PF12569 NARP1: NMDA receptor- 99.1 3.5E-06 7.5E-11 89.3 40.2 101 350-460 188-292 (517)
114 PRK14720 transcript cleavage f 99.1 2.8E-08 6.2E-13 109.6 25.4 236 389-683 28-284 (906)
115 PRK14720 transcript cleavage f 99.1 1.6E-08 3.5E-13 111.5 22.9 268 57-467 24-314 (906)
116 KOG3060|consensus 99.0 1.6E-07 3.4E-12 85.7 23.6 195 366-623 26-226 (289)
117 TIGR02552 LcrH_SycD type III s 99.0 4E-09 8.6E-14 92.5 13.1 117 51-177 4-120 (135)
118 KOG1128|consensus 99.0 2.6E-08 5.5E-13 103.7 19.9 220 391-653 397-616 (777)
119 PRK15179 Vi polysaccharide bio 99.0 5.1E-08 1.1E-12 107.0 23.3 119 533-657 103-221 (694)
120 KOG3060|consensus 99.0 1.8E-07 3.8E-12 85.4 21.7 190 43-284 25-223 (289)
121 COG5010 TadD Flp pilus assembl 98.9 1E-07 2.2E-12 87.8 18.2 168 19-197 55-226 (257)
122 COG4235 Cytochrome c biogenesi 98.9 3.6E-08 7.9E-13 93.4 14.9 116 18-138 143-259 (287)
123 COG5010 TadD Flp pilus assembl 98.9 2.7E-07 5.8E-12 85.2 19.1 175 411-648 52-226 (257)
124 COG4783 Putative Zn-dependent 98.9 2.8E-07 6.1E-12 92.3 20.2 149 28-200 303-452 (484)
125 PRK15363 pathogenicity island 98.8 6E-08 1.3E-12 83.5 12.6 103 26-136 29-133 (157)
126 KOG1128|consensus 98.8 1.2E-07 2.6E-12 98.8 17.0 128 396-581 489-616 (777)
127 KOG0550|consensus 98.8 4E-07 8.7E-12 88.7 17.8 122 530-653 217-350 (486)
128 COG4783 Putative Zn-dependent 98.8 4.9E-06 1.1E-10 83.6 25.5 151 431-656 307-457 (484)
129 PRK04841 transcriptional regul 98.8 8.6E-05 1.9E-09 87.6 40.8 246 366-658 505-765 (903)
130 COG4235 Cytochrome c biogenesi 98.7 3.2E-07 6.9E-12 87.0 14.7 123 44-176 136-261 (287)
131 KOG3617|consensus 98.7 0.00013 2.9E-09 77.4 34.7 133 85-279 741-885 (1416)
132 KOG0553|consensus 98.7 8.3E-08 1.8E-12 90.2 10.2 92 84-177 93-184 (304)
133 PRK04841 transcriptional regul 98.7 9.9E-05 2.1E-09 87.1 38.5 283 365-692 465-763 (903)
134 KOG3617|consensus 98.7 0.00012 2.7E-09 77.6 32.9 268 366-691 814-1111(1416)
135 KOG3785|consensus 98.7 0.00036 7.9E-09 67.1 33.0 434 86-665 36-499 (557)
136 PRK10153 DNA-binding transcrip 98.6 1.3E-06 2.8E-11 93.3 18.3 156 19-177 325-488 (517)
137 PLN03088 SGT1, suppressor of 98.6 5.1E-07 1.1E-11 92.5 14.4 93 38-138 9-102 (356)
138 PF04733 Coatomer_E: Coatomer 98.6 3.4E-06 7.3E-11 83.2 19.5 249 363-649 12-261 (290)
139 KOG0553|consensus 98.6 2.8E-07 6E-12 86.7 10.7 106 43-158 94-199 (304)
140 KOG2053|consensus 98.6 0.0024 5.2E-08 69.2 48.9 183 85-280 22-218 (932)
141 PF04733 Coatomer_E: Coatomer 98.6 8.2E-06 1.8E-10 80.5 19.7 170 391-623 101-271 (290)
142 cd00189 TPR Tetratricopeptide 98.5 1.1E-06 2.4E-11 71.1 11.5 96 34-137 3-99 (100)
143 PF08424 NRDE-2: NRDE-2, neces 98.5 7.6E-06 1.7E-10 82.5 19.2 121 49-171 4-131 (321)
144 PRK15363 pathogenicity island 98.5 2.3E-06 4.9E-11 73.9 12.6 100 552-655 35-134 (157)
145 PF09976 TPR_21: Tetratricopep 98.5 5.3E-06 1.1E-10 73.4 15.4 120 529-651 24-145 (145)
146 PRK02603 photosystem I assembl 98.5 3.5E-06 7.6E-11 77.0 14.5 126 29-184 33-162 (172)
147 PRK11906 transcriptional regul 98.5 9.5E-06 2.1E-10 82.1 18.2 171 24-198 241-432 (458)
148 PLN03088 SGT1, suppressor of 98.5 3.5E-06 7.7E-11 86.3 15.7 113 433-599 5-117 (356)
149 PF13414 TPR_11: TPR repeat; P 98.5 8.8E-07 1.9E-11 66.9 8.5 67 63-137 2-69 (69)
150 CHL00033 ycf3 photosystem I as 98.5 3.2E-06 7E-11 77.0 13.6 101 86-188 49-166 (168)
151 COG5191 Uncharacterized conser 98.4 2.6E-07 5.5E-12 86.4 5.6 133 12-154 32-188 (435)
152 cd00189 TPR Tetratricopeptide 98.4 2.4E-06 5.2E-11 69.1 10.7 87 86-174 14-100 (100)
153 PF13414 TPR_11: TPR repeat; P 98.4 4.8E-07 1.1E-11 68.4 5.9 67 391-461 2-69 (69)
154 TIGR02795 tol_pal_ybgF tol-pal 98.4 6.4E-06 1.4E-10 70.1 13.4 92 86-177 16-111 (119)
155 PF09976 TPR_21: Tetratricopep 98.4 1.1E-05 2.5E-10 71.2 15.3 116 43-169 24-145 (145)
156 TIGR02795 tol_pal_ybgF tol-pal 98.4 6E-06 1.3E-10 70.3 13.1 100 32-139 3-109 (119)
157 COG3898 Uncharacterized membra 98.4 0.00093 2E-08 65.3 27.9 253 363-691 131-392 (531)
158 PRK02603 photosystem I assembl 98.4 2.1E-05 4.5E-10 71.9 16.5 117 390-549 33-153 (172)
159 PF13432 TPR_16: Tetratricopep 98.4 1.1E-06 2.3E-11 65.5 6.5 63 397-463 2-64 (65)
160 PF14938 SNAP: Soluble NSF att 98.4 0.00013 2.7E-09 72.6 23.0 115 393-520 156-273 (282)
161 KOG4340|consensus 98.4 0.001 2.3E-08 62.6 26.8 161 25-201 38-206 (459)
162 CHL00033 ycf3 photosystem I as 98.3 1.5E-05 3.3E-10 72.5 14.9 116 15-138 17-152 (168)
163 PRK10866 outer membrane biogen 98.3 0.0002 4.2E-09 69.0 23.0 74 104-177 30-104 (243)
164 PF12895 Apc3: Anaphase-promot 98.3 2.2E-06 4.8E-11 67.6 7.7 79 86-167 3-83 (84)
165 PF13432 TPR_16: Tetratricopep 98.3 1.7E-06 3.7E-11 64.4 6.6 52 86-137 11-62 (65)
166 PF13525 YfiO: Outer membrane 98.3 0.00021 4.5E-09 67.1 22.1 72 105-176 4-76 (203)
167 COG5191 Uncharacterized conser 98.3 7.3E-07 1.6E-11 83.5 5.3 94 18-118 94-188 (435)
168 KOG3616|consensus 98.3 0.008 1.7E-07 63.5 42.1 54 394-459 767-820 (1636)
169 PRK10153 DNA-binding transcrip 98.3 3.3E-05 7.2E-10 82.6 18.1 153 53-287 326-488 (517)
170 PRK10866 outer membrane biogen 98.3 0.00027 5.9E-09 68.0 22.4 206 391-649 31-237 (243)
171 PF14559 TPR_19: Tetratricopep 98.3 2.4E-06 5.2E-11 64.3 6.4 63 86-150 5-67 (68)
172 PF13525 YfiO: Outer membrane 98.2 0.00013 2.8E-09 68.5 18.7 194 391-644 4-198 (203)
173 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.4E-05 5.1E-10 79.8 14.6 117 38-167 176-293 (395)
174 PF12895 Apc3: Anaphase-promot 98.2 2.8E-06 6.1E-11 67.0 6.3 80 119-199 2-84 (84)
175 PF14559 TPR_19: Tetratricopep 98.2 4E-06 8.7E-11 63.1 6.7 64 43-114 4-67 (68)
176 COG4700 Uncharacterized protei 98.2 0.00012 2.6E-09 63.9 16.0 147 45-200 71-220 (251)
177 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.4E-05 5.1E-10 79.8 13.9 112 530-650 183-294 (395)
178 PRK10803 tol-pal system protei 98.2 3.6E-05 7.7E-10 74.6 14.0 107 64-177 142-252 (263)
179 PRK10803 tol-pal system protei 98.2 4.3E-05 9.2E-10 74.1 13.8 102 30-139 141-250 (263)
180 PRK11906 transcriptional regul 98.1 6.2E-05 1.3E-09 76.3 15.2 146 532-682 274-429 (458)
181 KOG4340|consensus 98.1 0.0078 1.7E-07 56.9 29.8 147 43-203 23-174 (459)
182 PRK15331 chaperone protein Sic 98.1 5.4E-05 1.2E-09 65.7 12.0 99 30-137 36-135 (165)
183 COG3898 Uncharacterized membra 98.1 0.012 2.6E-07 57.9 28.9 289 85-462 97-395 (531)
184 PF14938 SNAP: Soluble NSF att 98.1 0.00016 3.5E-09 71.9 17.2 209 399-653 42-266 (282)
185 KOG3616|consensus 98.1 0.025 5.3E-07 60.0 35.0 274 107-454 766-1058(1636)
186 COG4785 NlpI Lipoprotein NlpI, 98.0 0.001 2.2E-08 59.7 18.1 196 392-653 65-266 (297)
187 PF12688 TPR_5: Tetratrico pep 98.0 0.00018 4E-09 60.1 12.3 99 554-652 3-103 (120)
188 PF13371 TPR_9: Tetratricopept 98.0 3.8E-05 8.2E-10 58.7 7.7 61 399-463 2-62 (73)
189 COG4785 NlpI Lipoprotein NlpI, 97.9 0.0011 2.5E-08 59.5 17.4 199 43-281 59-266 (297)
190 COG4700 Uncharacterized protei 97.9 0.0011 2.5E-08 57.9 16.9 127 392-575 89-216 (251)
191 KOG0543|consensus 97.9 0.00042 9.1E-09 68.7 15.9 66 394-463 259-324 (397)
192 KOG2053|consensus 97.9 0.058 1.3E-06 59.0 47.3 221 43-285 22-259 (932)
193 PF13371 TPR_9: Tetratricopept 97.9 7.6E-05 1.7E-09 56.9 8.1 63 43-113 8-70 (73)
194 KOG0543|consensus 97.8 0.00055 1.2E-08 67.9 13.8 134 396-583 212-357 (397)
195 PF12688 TPR_5: Tetratrico pep 97.8 0.0007 1.5E-08 56.6 12.6 69 393-462 2-70 (120)
196 KOG1130|consensus 97.8 0.0024 5.3E-08 62.9 17.8 94 366-459 209-304 (639)
197 PF13428 TPR_14: Tetratricopep 97.7 5.3E-05 1.2E-09 50.9 4.6 42 393-438 2-43 (44)
198 COG4105 ComL DNA uptake lipopr 97.7 0.01 2.3E-07 55.6 20.7 72 391-463 33-104 (254)
199 KOG3081|consensus 97.7 0.038 8.2E-07 51.8 23.9 165 396-623 112-277 (299)
200 COG0457 NrfG FOG: TPR repeat [ 97.7 0.017 3.6E-07 55.5 24.0 204 393-655 60-267 (291)
201 PF06552 TOM20_plant: Plant sp 97.7 0.00027 5.8E-09 62.0 9.2 75 46-120 7-83 (186)
202 COG4105 ComL DNA uptake lipopr 97.7 0.0097 2.1E-07 55.8 19.5 157 86-285 48-237 (254)
203 PF13428 TPR_14: Tetratricopep 97.7 0.00012 2.6E-09 49.1 5.3 42 31-72 1-43 (44)
204 PF08311 Mad3_BUB1_I: Mad3/BUB 97.7 0.0018 3.9E-08 55.0 13.5 113 533-651 2-126 (126)
205 PRK15331 chaperone protein Sic 97.5 0.0013 2.7E-08 57.4 11.1 96 554-653 39-134 (165)
206 PF13512 TPR_18: Tetratricopep 97.5 0.0029 6.4E-08 53.9 12.9 92 85-176 23-133 (142)
207 COG0457 NrfG FOG: TPR repeat [ 97.5 0.095 2.1E-06 50.0 26.3 220 405-684 36-260 (291)
208 KOG3081|consensus 97.5 0.036 7.8E-07 52.0 20.6 104 532-642 153-259 (299)
209 PF08311 Mad3_BUB1_I: Mad3/BUB 97.5 0.0016 3.5E-08 55.3 11.0 111 569-685 2-124 (126)
210 PF13512 TPR_18: Tetratricopep 97.5 0.0028 6.2E-08 53.9 12.2 99 31-139 10-132 (142)
211 COG1729 Uncharacterized protei 97.4 0.0025 5.5E-08 60.3 12.7 91 86-176 155-249 (262)
212 COG1729 Uncharacterized protei 97.4 0.0014 3E-08 62.0 10.9 87 115-201 150-243 (262)
213 PF13431 TPR_17: Tetratricopep 97.4 0.00024 5.2E-09 44.3 3.4 33 94-126 1-33 (34)
214 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0007 1.5E-08 68.8 8.6 69 101-171 70-141 (453)
215 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00092 2E-08 68.0 9.3 70 58-135 69-141 (453)
216 PF13424 TPR_12: Tetratricopep 97.3 0.00065 1.4E-08 52.5 6.3 69 391-459 4-75 (78)
217 KOG2796|consensus 97.3 0.087 1.9E-06 49.2 20.5 168 528-698 189-364 (366)
218 KOG1941|consensus 97.2 0.12 2.6E-06 50.6 21.5 219 393-653 123-360 (518)
219 PF06552 TOM20_plant: Plant sp 97.2 0.005 1.1E-07 54.3 10.9 96 446-585 7-113 (186)
220 KOG1585|consensus 97.2 0.19 4.1E-06 46.6 21.8 148 532-684 87-251 (308)
221 KOG4234|consensus 97.2 0.0072 1.6E-07 53.8 11.5 64 399-462 102-166 (271)
222 smart00386 HAT HAT (Half-A-TPR 97.2 0.00081 1.8E-08 41.7 4.4 31 44-74 1-31 (33)
223 PF13281 DUF4071: Domain of un 97.1 0.075 1.6E-06 53.7 20.0 181 391-619 140-336 (374)
224 KOG4642|consensus 97.1 0.0079 1.7E-07 55.1 11.6 101 43-151 23-126 (284)
225 KOG1586|consensus 97.1 0.24 5.2E-06 45.6 21.0 72 392-463 154-228 (288)
226 KOG4234|consensus 97.1 0.0032 7E-08 55.9 8.5 92 84-177 107-203 (271)
227 COG3118 Thioredoxin domain-con 97.0 0.085 1.8E-06 50.6 18.0 146 529-680 147-292 (304)
228 PF13431 TPR_17: Tetratricopep 97.0 0.0009 1.9E-08 41.7 3.2 34 538-573 1-34 (34)
229 KOG4555|consensus 97.0 0.0084 1.8E-07 49.3 9.4 96 559-656 50-147 (175)
230 KOG4642|consensus 96.9 0.0047 1E-07 56.6 8.3 93 77-171 15-107 (284)
231 smart00777 Mad3_BUB1_I Mad3/BU 96.9 0.028 6E-07 47.1 12.2 45 605-649 80-124 (125)
232 KOG1130|consensus 96.9 0.025 5.4E-07 56.0 13.6 118 366-496 31-150 (639)
233 PF13424 TPR_12: Tetratricopep 96.8 0.0052 1.1E-07 47.4 7.2 69 553-653 6-75 (78)
234 smart00777 Mad3_BUB1_I Mad3/BU 96.8 0.023 5E-07 47.6 11.1 108 571-684 4-123 (125)
235 KOG1586|consensus 96.8 0.43 9.3E-06 44.1 19.3 21 601-621 167-187 (288)
236 KOG4555|consensus 96.7 0.026 5.7E-07 46.5 10.5 90 528-619 55-146 (175)
237 KOG0985|consensus 96.7 1.5 3.2E-05 49.3 39.5 273 85-452 1061-1334(1666)
238 KOG1941|consensus 96.7 0.39 8.4E-06 47.2 19.8 123 531-653 137-275 (518)
239 PF02184 HAT: HAT (Half-A-TPR) 96.7 0.0031 6.7E-08 37.7 3.6 29 45-74 2-30 (32)
240 PF07719 TPR_2: Tetratricopept 96.6 0.0043 9.4E-08 38.7 4.1 31 394-424 3-33 (34)
241 KOG4648|consensus 96.5 0.013 2.7E-07 56.6 8.6 60 398-461 103-162 (536)
242 PF08631 SPO22: Meiosis protei 96.5 0.99 2.2E-05 44.7 26.0 247 402-687 3-273 (278)
243 PF04184 ST7: ST7 protein; In 96.5 0.41 9E-06 49.4 19.3 189 400-622 176-380 (539)
244 smart00386 HAT HAT (Half-A-TPR 96.4 0.0062 1.4E-07 37.5 4.3 31 87-117 2-32 (33)
245 KOG4648|consensus 96.4 0.0072 1.6E-07 58.2 6.4 101 76-178 101-201 (536)
246 PF03704 BTAD: Bacterial trans 96.4 0.067 1.5E-06 47.1 12.5 100 43-170 19-124 (146)
247 PF07719 TPR_2: Tetratricopept 96.3 0.0095 2.1E-07 37.1 4.7 33 106-138 1-33 (34)
248 PF02184 HAT: HAT (Half-A-TPR) 96.3 0.0063 1.4E-07 36.5 3.2 30 531-563 2-31 (32)
249 PF00515 TPR_1: Tetratricopept 96.2 0.0062 1.3E-07 38.0 3.4 31 394-424 3-33 (34)
250 KOG2796|consensus 96.2 1.2 2.5E-05 42.1 21.4 139 395-585 180-319 (366)
251 PF04184 ST7: ST7 protein; In 96.1 0.052 1.1E-06 55.7 11.0 135 44-199 182-321 (539)
252 KOG2610|consensus 96.1 0.31 6.7E-06 47.4 15.3 152 528-683 115-270 (491)
253 KOG1585|consensus 96.1 0.28 6E-06 45.6 14.3 94 367-460 125-220 (308)
254 PF00515 TPR_1: Tetratricopept 96.1 0.014 2.9E-07 36.4 4.4 32 107-138 2-33 (34)
255 PF03704 BTAD: Bacterial trans 96.0 0.16 3.4E-06 44.8 12.7 59 593-653 67-125 (146)
256 KOG2610|consensus 95.9 0.24 5.2E-06 48.1 13.7 155 85-280 116-275 (491)
257 COG3118 Thioredoxin domain-con 95.9 0.82 1.8E-05 44.1 17.2 131 396-584 138-268 (304)
258 PF10300 DUF3808: Protein of u 95.9 0.96 2.1E-05 48.4 20.2 120 530-653 247-376 (468)
259 KOG0890|consensus 95.8 7.3 0.00016 48.4 45.5 284 355-653 1630-1957(2382)
260 COG2976 Uncharacterized protei 95.8 0.11 2.5E-06 46.4 10.4 102 394-549 91-192 (207)
261 PF13281 DUF4071: Domain of un 95.8 1.9 4.1E-05 43.9 20.3 91 366-462 155-258 (374)
262 PF14561 TPR_20: Tetratricopep 95.4 0.19 4.1E-06 39.7 9.4 79 91-169 7-85 (90)
263 KOG2471|consensus 95.3 1.4 3.1E-05 45.2 17.2 70 393-462 284-367 (696)
264 PF13181 TPR_8: Tetratricopept 95.2 0.027 5.8E-07 35.0 3.4 30 394-423 3-32 (34)
265 KOG1308|consensus 95.1 0.027 5.9E-07 54.7 4.4 119 528-653 126-244 (377)
266 PF02259 FAT: FAT domain; Int 95.1 4.8 0.0001 41.4 26.6 69 390-458 144-212 (352)
267 COG2976 Uncharacterized protei 95.0 0.89 1.9E-05 41.0 13.1 118 534-654 70-189 (207)
268 KOG1464|consensus 95.0 1.7 3.6E-05 41.1 15.3 54 405-458 40-93 (440)
269 KOG0376|consensus 94.9 0.029 6.3E-07 57.2 4.2 99 43-151 17-115 (476)
270 PF10300 DUF3808: Protein of u 94.8 1.5 3.2E-05 47.0 17.3 157 43-200 201-374 (468)
271 PF13174 TPR_6: Tetratricopept 94.8 0.069 1.5E-06 32.7 4.3 31 254-284 2-32 (33)
272 PF13181 TPR_8: Tetratricopept 94.8 0.059 1.3E-06 33.4 4.0 32 553-584 2-33 (34)
273 KOG0545|consensus 94.6 0.88 1.9E-05 42.4 12.5 87 43-137 191-295 (329)
274 KOG0551|consensus 94.5 2.9 6.3E-05 41.0 16.1 65 399-463 88-152 (390)
275 KOG0890|consensus 94.4 19 0.00041 45.1 40.0 281 382-688 1619-1956(2382)
276 PF13174 TPR_6: Tetratricopept 94.4 0.058 1.3E-06 33.1 3.2 31 394-424 2-32 (33)
277 KOG0545|consensus 94.3 0.29 6.2E-06 45.4 8.6 91 85-177 191-299 (329)
278 KOG1308|consensus 94.3 0.027 5.8E-07 54.8 2.2 89 84-174 126-214 (377)
279 PF13176 TPR_7: Tetratricopept 94.1 0.11 2.5E-06 32.7 4.2 28 254-281 1-28 (36)
280 PF02259 FAT: FAT domain; Int 94.1 8 0.00017 39.7 28.6 125 350-493 142-304 (352)
281 KOG3824|consensus 94.0 0.12 2.5E-06 49.5 5.8 66 114-181 124-189 (472)
282 KOG3824|consensus 94.0 0.17 3.6E-06 48.5 6.9 81 25-113 107-191 (472)
283 PF04910 Tcf25: Transcriptiona 94.0 2.4 5.3E-05 43.5 16.0 148 20-177 29-228 (360)
284 KOG2300|consensus 93.4 11 0.00024 39.1 41.7 184 363-593 334-528 (629)
285 PF13176 TPR_7: Tetratricopept 93.1 0.17 3.7E-06 31.9 3.8 28 554-581 1-28 (36)
286 PF08631 SPO22: Meiosis protei 92.9 11 0.00023 37.4 25.5 97 366-463 7-120 (278)
287 KOG1464|consensus 92.6 8.9 0.00019 36.4 15.6 127 30-160 25-163 (440)
288 KOG0376|consensus 92.6 0.16 3.4E-06 52.0 4.7 92 85-178 17-108 (476)
289 KOG0530|consensus 92.6 9.8 0.00021 36.2 20.1 227 402-690 53-295 (318)
290 PF14561 TPR_20: Tetratricopep 92.5 1.7 3.6E-05 34.3 9.5 74 50-131 8-83 (90)
291 PF04053 Coatomer_WDAD: Coatom 92.5 4.8 0.0001 42.5 15.7 98 118-277 273-372 (443)
292 smart00028 TPR Tetratricopepti 92.4 0.24 5.2E-06 29.5 3.8 30 394-423 3-32 (34)
293 COG4976 Predicted methyltransf 91.7 0.21 4.5E-06 45.8 3.9 56 600-657 7-62 (287)
294 PF10602 RPN7: 26S proteasome 91.7 6.8 0.00015 35.6 13.8 101 553-653 37-142 (177)
295 PF04910 Tcf25: Transcriptiona 91.6 9.1 0.0002 39.4 16.1 166 420-620 34-225 (360)
296 KOG2041|consensus 91.3 25 0.00055 38.3 32.4 31 102-133 689-719 (1189)
297 KOG0985|consensus 91.2 32 0.0007 39.4 40.5 157 86-279 1089-1247(1666)
298 PF04781 DUF627: Protein of un 91.1 3.7 8.1E-05 33.4 9.9 106 437-582 3-108 (111)
299 KOG0530|consensus 91.0 15 0.00032 35.1 20.8 129 43-180 56-185 (318)
300 PF10602 RPN7: 26S proteasome 91.0 2.9 6.2E-05 38.0 10.6 33 252-284 36-68 (177)
301 KOG4507|consensus 90.6 1.4 3E-05 46.3 8.9 94 529-625 620-713 (886)
302 COG4976 Predicted methyltransf 90.6 0.35 7.7E-06 44.4 4.2 59 116-176 5-63 (287)
303 smart00028 TPR Tetratricopepti 90.2 0.51 1.1E-05 28.0 3.7 31 107-137 2-32 (34)
304 PF10345 Cohesin_load: Cohesin 89.9 38 0.00082 38.0 45.1 165 30-199 58-251 (608)
305 PF09986 DUF2225: Uncharacteri 89.6 3.1 6.8E-05 39.1 9.9 97 366-462 91-197 (214)
306 KOG1538|consensus 89.1 37 0.00079 36.8 20.8 23 255-277 588-610 (1081)
307 PF04053 Coatomer_WDAD: Coatom 88.8 36 0.00077 36.2 18.4 137 361-585 270-406 (443)
308 KOG0551|consensus 87.9 2.5 5.5E-05 41.4 8.0 99 553-653 82-182 (390)
309 PF09613 HrpB1_HrpK: Bacterial 87.4 20 0.00043 31.6 14.6 66 394-463 12-77 (160)
310 KOG2422|consensus 87.2 20 0.00043 38.2 14.4 143 26-176 279-453 (665)
311 PRK10941 hypothetical protein; 87.1 6.9 0.00015 38.2 10.7 54 530-585 195-248 (269)
312 COG3947 Response regulator con 87.0 8.2 0.00018 37.3 10.6 57 110-168 283-339 (361)
313 PRK10941 hypothetical protein; 86.4 6.8 0.00015 38.3 10.2 54 601-656 194-247 (269)
314 KOG0529|consensus 85.7 6.8 0.00015 39.8 9.9 97 16-116 94-193 (421)
315 PF09986 DUF2225: Uncharacteri 85.6 9.8 0.00021 35.8 10.6 96 530-654 91-195 (214)
316 KOG2300|consensus 85.6 50 0.0011 34.6 30.2 163 529-695 336-520 (629)
317 KOG2041|consensus 85.5 62 0.0013 35.5 25.2 75 366-456 748-822 (1189)
318 PF11207 DUF2989: Protein of u 84.8 17 0.00038 33.3 11.2 87 553-646 112-200 (203)
319 COG3629 DnrI DNA-binding trans 84.3 7.7 0.00017 37.8 9.4 64 391-458 152-215 (280)
320 KOG4507|consensus 84.1 5.7 0.00012 42.0 8.8 91 86-178 621-712 (886)
321 PF13374 TPR_10: Tetratricopep 83.5 2.6 5.6E-05 27.2 4.3 30 253-282 3-32 (42)
322 PF13041 PPR_2: PPR repeat fam 83.1 4.2 9.2E-05 27.7 5.4 38 253-290 4-43 (50)
323 KOG2471|consensus 83.1 65 0.0014 33.8 21.5 44 252-298 335-378 (696)
324 PF14853 Fis1_TPR_C: Fis1 C-te 82.8 9.9 0.00021 26.4 6.9 24 562-585 11-34 (53)
325 PF14853 Fis1_TPR_C: Fis1 C-te 81.6 7.1 0.00015 27.1 5.9 32 395-426 4-35 (53)
326 KOG1538|consensus 81.5 77 0.0017 34.5 15.7 215 31-280 585-832 (1081)
327 COG3629 DnrI DNA-binding trans 80.9 11 0.00024 36.7 9.1 63 106-170 153-215 (280)
328 PF09613 HrpB1_HrpK: Bacterial 80.7 40 0.00086 29.8 14.9 87 529-620 23-109 (160)
329 PF07721 TPR_4: Tetratricopept 80.2 3.2 6.9E-05 23.7 3.3 22 395-416 4-25 (26)
330 TIGR03504 FimV_Cterm FimV C-te 79.9 4.3 9.3E-05 26.9 4.1 28 556-583 3-30 (44)
331 PF10345 Cohesin_load: Cohesin 79.6 1.1E+02 0.0024 34.3 43.4 115 47-170 38-167 (608)
332 PF07721 TPR_4: Tetratricopept 79.5 2.7 5.8E-05 24.1 2.8 24 107-130 2-25 (26)
333 PF13374 TPR_10: Tetratricopep 79.5 4.4 9.5E-05 26.0 4.3 29 107-135 3-31 (42)
334 KOG3364|consensus 79.3 37 0.0008 28.9 10.2 72 552-624 32-107 (149)
335 PF12854 PPR_1: PPR repeat 78.4 4.6 0.0001 24.9 3.8 26 252-277 7-32 (34)
336 PF12854 PPR_1: PPR repeat 78.4 4.5 9.7E-05 25.0 3.7 27 105-131 6-32 (34)
337 KOG3807|consensus 77.7 31 0.00066 34.0 10.7 127 47-196 201-334 (556)
338 KOG4814|consensus 77.7 12 0.00025 40.3 8.6 101 355-459 356-457 (872)
339 PF04781 DUF627: Protein of un 76.3 19 0.00041 29.4 7.7 27 43-69 9-35 (111)
340 PF12862 Apc5: Anaphase-promot 76.2 9.4 0.0002 30.4 6.1 56 366-421 12-70 (94)
341 KOG0529|consensus 75.8 70 0.0015 32.9 13.0 131 46-179 45-186 (421)
342 KOG3783|consensus 75.7 1.2E+02 0.0026 32.5 17.7 70 391-462 266-335 (546)
343 COG1747 Uncharacterized N-term 75.5 1.2E+02 0.0025 32.3 18.9 30 433-462 69-98 (711)
344 PF01535 PPR: PPR repeat; Int 75.0 4.5 9.7E-05 23.8 3.1 27 254-280 2-28 (31)
345 KOG3807|consensus 74.9 42 0.0009 33.1 10.8 130 532-680 200-331 (556)
346 KOG0276|consensus 74.9 48 0.001 35.7 12.0 43 86-133 651-693 (794)
347 KOG2422|consensus 74.3 1.3E+02 0.0029 32.4 16.5 94 558-655 348-450 (665)
348 KOG1550|consensus 73.8 85 0.0018 34.6 14.7 137 530-679 263-416 (552)
349 PF12862 Apc5: Anaphase-promot 72.9 18 0.00039 28.7 7.0 31 626-656 43-73 (94)
350 PF13041 PPR_2: PPR repeat fam 72.7 14 0.0003 25.1 5.5 31 105-135 2-32 (50)
351 PF11207 DUF2989: Protein of u 71.7 84 0.0018 29.0 14.5 74 533-608 123-198 (203)
352 COG2909 MalT ATP-dependent tra 71.4 1.9E+02 0.0042 33.0 29.0 244 390-684 413-683 (894)
353 KOG1310|consensus 71.0 22 0.00047 37.5 8.4 89 86-176 388-479 (758)
354 PF07720 TPR_3: Tetratricopept 70.6 11 0.00023 23.8 4.0 21 394-414 3-23 (36)
355 PF09797 NatB_MDM20: N-acetylt 70.2 53 0.0012 34.0 11.6 114 568-694 199-320 (365)
356 TIGR02561 HrpB1_HrpK type III 70.1 74 0.0016 27.7 13.8 58 401-462 19-76 (153)
357 KOG4279|consensus 69.6 86 0.0019 34.8 12.6 55 404-462 255-319 (1226)
358 TIGR02996 rpt_mate_G_obs repea 69.3 12 0.00027 24.3 4.0 31 94-124 4-34 (42)
359 COG1747 Uncharacterized N-term 68.3 1.7E+02 0.0037 31.2 21.4 68 400-467 213-296 (711)
360 PRK15180 Vi polysaccharide bio 68.2 31 0.00067 35.8 8.7 123 529-657 302-424 (831)
361 KOG2066|consensus 67.7 2.1E+02 0.0047 32.1 20.4 77 399-497 363-439 (846)
362 TIGR00756 PPR pentatricopeptid 67.6 11 0.00023 22.8 3.7 28 254-281 2-29 (35)
363 TIGR03504 FimV_Cterm FimV C-te 67.6 11 0.00024 25.0 3.8 26 256-281 3-28 (44)
364 TIGR02996 rpt_mate_G_obs repea 67.6 10 0.00022 24.6 3.4 32 18-49 3-35 (42)
365 PF13226 DUF4034: Domain of un 67.6 74 0.0016 31.2 11.0 130 40-183 10-140 (277)
366 KOG2581|consensus 67.2 1.6E+02 0.0034 30.4 14.3 126 530-657 140-280 (493)
367 COG4455 ImpE Protein of avirul 67.2 34 0.00075 31.8 7.9 69 529-599 14-83 (273)
368 PF01535 PPR: PPR repeat; Int 67.0 8.8 0.00019 22.5 3.1 25 433-457 3-27 (31)
369 COG2909 MalT ATP-dependent tra 65.8 2.5E+02 0.0054 32.2 31.1 82 362-444 468-551 (894)
370 KOG3364|consensus 64.5 54 0.0012 28.0 8.0 58 530-588 49-107 (149)
371 KOG1310|consensus 63.9 33 0.00072 36.2 8.1 90 44-138 388-477 (758)
372 COG4455 ImpE Protein of avirul 63.9 1.3E+02 0.0028 28.2 12.1 128 401-549 10-138 (273)
373 KOG0276|consensus 62.7 71 0.0015 34.5 10.3 79 144-280 616-694 (794)
374 COG3947 Response regulator con 62.5 30 0.00065 33.6 7.0 59 393-455 280-338 (361)
375 PF11846 DUF3366: Domain of un 62.4 28 0.00061 32.1 7.1 50 87-137 126-175 (193)
376 PF07720 TPR_3: Tetratricopept 62.2 24 0.00051 22.2 4.3 21 554-574 3-23 (36)
377 PF15297 CKAP2_C: Cytoskeleton 62.1 53 0.0011 33.0 8.9 66 605-671 120-186 (353)
378 COG4649 Uncharacterized protei 61.4 1.2E+02 0.0027 27.2 13.7 120 529-652 71-195 (221)
379 KOG1166|consensus 58.9 1.7E+02 0.0037 34.4 13.4 71 603-674 93-163 (974)
380 PF13812 PPR_3: Pentatricopept 58.4 23 0.00049 21.2 4.0 28 253-280 2-29 (34)
381 PRK13184 pknD serine/threonine 58.3 3.7E+02 0.0081 31.7 28.1 102 255-383 478-583 (932)
382 KOG0686|consensus 57.8 2.3E+02 0.0051 29.2 12.7 166 107-277 151-329 (466)
383 TIGR00756 PPR pentatricopeptid 57.4 21 0.00045 21.4 3.7 26 433-458 3-28 (35)
384 KOG4814|consensus 56.8 3.1E+02 0.0066 30.2 14.0 98 553-653 356-457 (872)
385 PF10516 SHNi-TPR: SHNi-TPR; 56.7 17 0.00037 23.2 3.1 27 394-420 3-29 (38)
386 PF10579 Rapsyn_N: Rapsyn N-te 56.4 86 0.0019 23.9 7.1 49 526-576 16-67 (80)
387 PRK15180 Vi polysaccharide bio 56.3 37 0.0008 35.3 6.9 130 43-182 302-431 (831)
388 PF10516 SHNi-TPR: SHNi-TPR; 55.2 29 0.00064 22.1 3.9 29 253-281 2-30 (38)
389 cd00280 TRFH Telomeric Repeat 54.9 72 0.0016 28.8 7.6 62 46-108 85-146 (200)
390 COG4259 Uncharacterized protei 54.3 75 0.0016 25.3 6.7 84 510-600 26-114 (121)
391 PF11846 DUF3366: Domain of un 53.9 43 0.00093 30.9 6.7 51 532-585 127-177 (193)
392 PF15297 CKAP2_C: Cytoskeleton 52.7 64 0.0014 32.4 7.7 56 406-462 117-172 (353)
393 COG3914 Spy Predicted O-linked 52.1 3.5E+02 0.0076 29.5 13.9 128 44-179 45-179 (620)
394 COG4941 Predicted RNA polymera 51.6 2.5E+02 0.0055 28.2 11.3 90 86-177 310-400 (415)
395 cd02680 MIT_calpain7_2 MIT: do 50.3 20 0.00044 27.0 3.1 16 602-617 20-35 (75)
396 PF09797 NatB_MDM20: N-acetylt 50.3 1.5E+02 0.0032 30.7 10.7 47 85-131 196-242 (365)
397 COG2912 Uncharacterized conser 49.7 65 0.0014 31.2 7.1 56 600-657 193-248 (269)
398 PF11817 Foie-gras_1: Foie gra 48.9 1.2E+02 0.0025 29.4 9.1 85 369-453 155-241 (247)
399 KOG1550|consensus 47.9 4.2E+02 0.0092 29.3 22.0 248 366-683 263-532 (552)
400 PF00244 14-3-3: 14-3-3 protei 47.7 2.6E+02 0.0057 26.8 14.2 50 408-458 142-197 (236)
401 PF04840 Vps16_C: Vps16, C-ter 47.3 3.2E+02 0.0069 27.6 17.6 55 142-198 208-262 (319)
402 cd02680 MIT_calpain7_2 MIT: do 46.4 27 0.0006 26.3 3.3 34 604-654 3-36 (75)
403 PF10579 Rapsyn_N: Rapsyn N-te 45.2 1.2E+02 0.0026 23.2 6.3 20 603-622 21-40 (80)
404 COG0790 FOG: TPR repeat, SEL1 44.8 3.2E+02 0.0069 27.0 17.8 15 639-653 252-266 (292)
405 KOG1166|consensus 44.7 2.8E+02 0.0061 32.7 12.3 129 510-640 31-165 (974)
406 TIGR02561 HrpB1_HrpK type III 44.6 2.2E+02 0.0047 25.0 13.0 54 529-584 23-76 (153)
407 KOG2114|consensus 44.5 5.4E+02 0.012 29.5 18.5 56 401-460 343-398 (933)
408 smart00299 CLH Clathrin heavy 43.7 2.1E+02 0.0045 24.5 13.3 74 86-167 21-94 (140)
409 PF14929 TAF1_subA: TAF RNA Po 43.4 2.9E+02 0.0062 30.3 11.5 92 46-138 274-376 (547)
410 COG2912 Uncharacterized conser 43.3 97 0.0021 30.1 7.2 60 116-177 191-250 (269)
411 PRK12798 chemotaxis protein; R 42.3 4.2E+02 0.0092 27.6 19.9 188 492-690 92-287 (421)
412 KOG4014|consensus 42.2 2.7E+02 0.0058 25.3 13.6 59 638-700 182-247 (248)
413 PF10037 MRP-S27: Mitochondria 41.9 3.1E+02 0.0068 29.0 11.3 102 103-205 63-170 (429)
414 KOG4521|consensus 41.1 7.1E+02 0.015 29.9 18.3 45 646-691 1089-1134(1480)
415 KOG2581|consensus 40.3 4.4E+02 0.0096 27.3 13.4 139 399-549 133-280 (493)
416 COG5536 BET4 Protein prenyltra 40.2 1.6E+02 0.0035 28.6 7.9 102 11-114 88-192 (328)
417 PF10373 EST1_DNA_bind: Est1 D 40.0 1.3E+02 0.0028 29.4 8.2 45 607-653 1-45 (278)
418 KOG1811|consensus 39.9 5.2E+02 0.011 28.2 12.2 72 626-700 589-660 (1141)
419 PF12968 DUF3856: Domain of Un 39.7 2.3E+02 0.0049 23.8 10.2 101 554-654 9-130 (144)
420 PF09205 DUF1955: Domain of un 39.2 2.2E+02 0.0047 24.4 7.6 57 595-653 93-149 (161)
421 PF04190 DUF410: Protein of un 38.6 3.8E+02 0.0083 26.1 13.1 30 389-418 87-116 (260)
422 PRK15338 type III secretion sy 37.8 3.6E+02 0.0078 27.6 10.4 144 17-171 79-229 (372)
423 COG3914 Spy Predicted O-linked 36.1 6.2E+02 0.013 27.7 16.5 20 530-549 156-175 (620)
424 KOG4014|consensus 35.2 3.5E+02 0.0076 24.6 14.3 192 391-654 33-234 (248)
425 COG5536 BET4 Protein prenyltra 33.9 4.7E+02 0.01 25.7 11.0 143 1-147 1-149 (328)
426 KOG1497|consensus 33.6 3.4E+02 0.0074 27.1 9.1 67 391-457 102-171 (399)
427 COG4259 Uncharacterized protei 33.4 2.5E+02 0.0055 22.5 7.1 79 60-138 25-104 (121)
428 KOG0687|consensus 33.1 5.2E+02 0.011 26.0 13.7 31 251-281 103-133 (393)
429 PF04212 MIT: MIT (microtubule 33.1 61 0.0013 23.8 3.4 18 636-653 17-34 (69)
430 KOG1811|consensus 31.9 5.1E+02 0.011 28.2 10.7 52 406-464 570-621 (1141)
431 PF12583 TPPII_N: Tripeptidyl 31.7 1.5E+02 0.0032 25.2 5.5 32 44-75 90-121 (139)
432 PF04840 Vps16_C: Vps16, C-ter 31.5 3.5E+02 0.0077 27.3 9.5 81 105-198 207-287 (319)
433 PF09205 DUF1955: Domain of un 31.4 2.6E+02 0.0055 24.0 6.9 57 400-460 94-150 (161)
434 PF14929 TAF1_subA: TAF RNA Po 31.4 7.4E+02 0.016 27.2 15.1 101 566-672 323-423 (547)
435 PF12921 ATP13: Mitochondrial 31.4 3.2E+02 0.007 23.1 11.6 100 554-675 4-103 (126)
436 COG4941 Predicted RNA polymera 30.8 5.8E+02 0.013 25.8 15.7 127 512-656 263-397 (415)
437 smart00299 CLH Clathrin heavy 30.7 3.4E+02 0.0073 23.1 13.1 76 117-197 18-93 (140)
438 COG4649 Uncharacterized protei 30.1 4.2E+02 0.0091 24.0 13.6 113 86-201 72-195 (221)
439 KOG1920|consensus 29.6 1.1E+03 0.023 28.5 17.4 145 104-281 865-1028(1265)
440 PF02064 MAS20: MAS20 protein 29.5 1.3E+02 0.0028 25.2 5.0 38 255-292 66-103 (121)
441 PF12968 DUF3856: Domain of Un 29.0 3.5E+02 0.0076 22.7 9.8 46 533-580 79-128 (144)
442 COG0790 FOG: TPR repeat, SEL1 27.9 5.9E+02 0.013 25.0 18.1 116 531-654 92-221 (292)
443 cd02684 MIT_2 MIT: domain cont 27.8 92 0.002 23.5 3.6 17 637-653 19-35 (75)
444 TIGR01987 HI0074 nucleotidyltr 27.6 3.8E+02 0.0081 22.6 8.1 19 45-63 4-22 (123)
445 PF10373 EST1_DNA_bind: Est1 D 27.6 1.2E+02 0.0027 29.6 5.7 44 91-134 1-44 (278)
446 KOG2908|consensus 27.6 6.6E+02 0.014 25.5 15.0 86 366-451 89-178 (380)
447 KOG2460|consensus 26.7 7E+02 0.015 26.9 10.6 27 255-281 425-451 (593)
448 cd02681 MIT_calpain7_1 MIT: do 26.6 1E+02 0.0022 23.4 3.6 29 160-200 5-33 (76)
449 KOG0686|consensus 25.0 2.9E+02 0.0063 28.6 7.3 68 392-460 150-217 (466)
450 KOG2066|consensus 24.5 1.1E+03 0.024 27.0 23.5 28 253-280 506-533 (846)
451 PF09670 Cas_Cas02710: CRISPR- 24.3 8.2E+02 0.018 25.4 14.3 60 398-459 137-198 (379)
452 cd02678 MIT_VPS4 MIT: domain c 22.9 1.3E+02 0.0029 22.6 3.7 18 636-653 18-35 (75)
453 KOG4521|consensus 22.2 1.4E+03 0.031 27.5 17.3 147 395-583 986-1134(1480)
454 PF11817 Foie-gras_1: Foie gra 22.2 3.9E+02 0.0085 25.7 7.8 28 626-653 180-207 (247)
455 PF09670 Cas_Cas02710: CRISPR- 21.9 9.1E+02 0.02 25.1 14.9 55 527-581 142-198 (379)
456 PF06957 COPI_C: Coatomer (COP 21.9 4.3E+02 0.0093 27.8 8.2 24 562-585 310-333 (422)
457 cd02682 MIT_AAA_Arch MIT: doma 21.7 3.4E+02 0.0073 20.6 5.5 15 609-623 34-48 (75)
458 PF13929 mRNA_stabil: mRNA sta 21.6 6.4E+02 0.014 24.9 8.8 61 624-684 202-262 (292)
459 KOG1920|consensus 21.4 1.5E+03 0.032 27.4 21.6 24 254-277 941-964 (1265)
460 PRK15490 Vi polysaccharide bio 21.2 6E+02 0.013 28.0 9.4 78 43-130 21-98 (578)
461 PF14863 Alkyl_sulf_dimr: Alky 21.0 5.6E+02 0.012 22.2 7.5 71 215-287 35-105 (141)
No 1
>KOG2047|consensus
Probab=100.00 E-value=1.7e-89 Score=678.21 Aligned_cols=688 Identities=70% Similarity=1.176 Sum_probs=658.1
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
+..+++.||.-|.+||.|++.|..|+.+-......+..-+||||++.+|.|..+|..|++...++.++.|..+..+...-
T Consensus 9 ~~~EDvpfEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn 88 (835)
T KOG2047|consen 9 FENEDVPFEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVN 88 (835)
T ss_pred ccccccchHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHH
Confidence 34478999999999999999999999999866677888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q psy6461 93 NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172 (703)
Q Consensus 93 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 172 (703)
..|++++....+.|.+|+.|+++++.+|++...|+.|++||...|.+++..+|..|..|....+-++.++.+|++.|+..
T Consensus 89 ~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~ 168 (835)
T KOG2047|consen 89 NCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA 168 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchh
Q psy6461 173 PEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252 (703)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (703)
|...+.|+.++...+++++|.+.|..+++.+.|+++.|++++++|..+++++..+|+.+.+++++++++.++.+++++.+
T Consensus 169 P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g 248 (835)
T KOG2047|consen 169 PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG 248 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLE 332 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (703)
.+|..|++.|++.|.+++|+.+|+.++....++.+|.++|..|+.||+......|. +....+.+...+.+++..++.++
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888887 33333445557778889999999
Q ss_pred HHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHH
Q psy6461 333 DLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDAR 412 (703)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 412 (703)
+++++|+.+++++++++||+++..|.+++.+++|+..+.+.+|.+|+..++|...++....+|..+|++|+.+|+++.|+
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc-ccccchhhHHHHHHhhHHHHHHHHHHH
Q psy6461 413 LIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPV-AYHDEAETVQARVYKSIKLWSLYADLE 491 (703)
Q Consensus 413 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (703)
.+|+++++.+...+.+++.+|+.+|.++++..+++.|++++++|...+.+.. .+++.+.|.|.|+++|..+|.+|++++
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 9999999999888889999999999999999999999999999999877655 888999999999999999999999999
Q ss_pred HhcCCh--------------------------------------hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChh
Q psy6461 492 ESFGTF--------------------------------------KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLE 533 (703)
Q Consensus 492 ~~~~~~--------------------------------------~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 533 (703)
+..|.+ ++||++|+.|++|...++|..|+.++..+++..+++
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 999977 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHH
Q psy6461 534 RARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYER 613 (703)
Q Consensus 534 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 613 (703)
+||.+|++|++.+|...+..+|+.|+.++...|....|+++|++|....+......+|+.||.-....-+....|.+|++
T Consensus 568 raRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 568 RARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 99999999999999877788999999999999999999999999999999988999999999998888899999999999
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy6461 614 AIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQY 693 (703)
Q Consensus 614 al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 693 (703)
|++..|++......+.+|+++.+.|++++||.+|.-|.+++||.....+|..|..|+..||+.+.+++|+++.|.|++++
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsvqa~y 727 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSVQATY 727 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccc
Q psy6461 694 NTQVLFTF 701 (703)
Q Consensus 694 ~~~~~~~~ 701 (703)
||+|+|+.
T Consensus 728 n~~~~~~a 735 (835)
T KOG2047|consen 728 NTDVNSMA 735 (835)
T ss_pred hhhHHHHH
Confidence 99999875
No 2
>KOG1915|consensus
Probab=100.00 E-value=3.1e-56 Score=427.23 Aligned_cols=534 Identities=22% Similarity=0.390 Sum_probs=471.4
Q ss_pred CchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q psy6461 16 EDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNT 94 (703)
Q Consensus 16 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~ 94 (703)
.+.+||..|..|-.+...|+.|+..+. ++++.+|+++|||||..+..+..+|+.|++++.. + .++..|+++
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emk---n-----k~vNhARNv 129 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMK---N-----KQVNHARNV 129 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh---h-----hhHhHHHHH
Confidence 348999999999999999999999999 9999999999999999999999999999999654 3 557779999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q psy6461 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174 (703)
Q Consensus 95 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 174 (703)
++||+...|.-..+|..|.-++-..|++.-||.+|+|-+...|. ...|..++.|+.+.++.+.|+.+|++.+-.+|+
T Consensus 130 ~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~---eqaW~sfI~fElRykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 130 WDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD---EQAWLSFIKFELRYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence 99999999999999999999999999999999999999999995 589999999999999999999999999999988
Q ss_pred CHHHHH---HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccch
Q psy6461 175 DAEDYI---EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQL 251 (703)
Q Consensus 175 ~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (703)
-. .|+ .+-...|+..-++++|+.+++.-+ +. ...
T Consensus 207 v~-~wikyarFE~k~g~~~~aR~VyerAie~~~---------------------~d---------------------~~~ 243 (677)
T KOG1915|consen 207 VS-NWIKYARFEEKHGNVALARSVYERAIEFLG---------------------DD---------------------EEA 243 (677)
T ss_pred HH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---------------------hH---------------------HHH
Confidence 64 454 445789999999999998863110 00 011
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
..+....+.+..++..+++|+.+|+-++...|... ...+|..|..||+.+++. .+..+....++.-+|
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r-aeeL~k~~~~fEKqfGd~-----------~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGR-AEELYKKYTAFEKQFGDK-----------EGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHhcch-----------hhhHHHHhhhhhhHH
Confidence 24778899999999999999999999999988653 457999999999998642 344555666777788
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCcc---CCchhHHHHHHHHHHH-Hc
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLA---VGKLHTLWIEFGKFYE-VN 405 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~---~~~~~~~~~~~a~~~~-~~ 405 (703)
+.. ++.||.|.++|+.++.+.+ |+.+..+++|++||..+||... +..+..+|++|+-+.+ ..
T Consensus 312 E~~------------v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 312 EKE------------VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHH------------HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 885 8899999999999999876 8999999999999999888652 2456789999998876 78
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHH
Q psy6461 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWS 485 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 485 (703)
.+.+.++++|+.|+++-|+..+++..+|+.|+.++.++.+...|++++..|+..+|. ..++-
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK------------------~KlFk 441 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK------------------DKLFK 441 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc------------------hhHHH
Confidence 899999999999999999999999999999999999999999999999999999998 68999
Q ss_pred HHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 486 LYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 486 ~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 565 (703)
.|+.++...+++ |+.|.+|++-++-.|.+ +..|+.||.++...
T Consensus 442 ~YIelElqL~ef-----------------------------------DRcRkLYEkfle~~Pe~--c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 442 GYIELELQLREF-----------------------------------DRCRKLYEKFLEFSPEN--CYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHhhH-----------------------------------HHHHHHHHHHHhcChHh--hHHHHHHHHHHHHh
Confidence 999999988776 99999999999999998 67999999999999
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHH-----HcC--
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET-----KLG-- 638 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~-----~~g-- 638 (703)
|+.+.|+.+|+-|++...-+.+..+|..||+|++..|.+++||.+|++.|...+. +.+|+.+|.++. ..|
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h---~kvWisFA~fe~s~~~~~~~~~ 561 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH---VKVWISFAKFEASASEGQEDED 561 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc---chHHHhHHHHhccccccccccc
Confidence 9999999999999998877777889999999999999999999999999999875 448999999998 345
Q ss_pred ---------CHHHHHHHHHHHhcccC----CCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 639 ---------EIDRARAIYAHCSQICD----PRVTAGFWAAWKSFEITHGNEDTMREMLRI 685 (703)
Q Consensus 639 ---------~~~~A~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 685 (703)
++..|+++|++|..... .+.-..+.+.|.+++...|+..+.+.|-.+
T Consensus 562 ~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~ 621 (677)
T KOG1915|consen 562 LAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSK 621 (677)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHh
Confidence 67899999999976532 233578999999999999999998888653
No 3
>KOG0495|consensus
Probab=100.00 E-value=2.2e-45 Score=365.34 Aligned_cols=574 Identities=20% Similarity=0.294 Sum_probs=458.8
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHH
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYED 90 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (703)
++.|.|+.+..+.+.||.++.+|+.-++++. .|++.-|+.+.++.++.+|.|.++|+..++++ ..+.
T Consensus 266 DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLh------------p~d~ 333 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLH------------PPDV 333 (913)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcC------------ChHH
Confidence 5778889999999999999999999999999 99999999999999999999999999998872 3456
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
|..+...|++..|.++.+|+..+.++ .+...-.+++.+||+.+| .+..+|.....++ +++.|+.++.++++
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP--~sv~LWKaAVelE----~~~darilL~rAve 404 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAADLE---SDTKNKKRVLRKALEHIP--RSVRLWKAAVELE----EPEDARILLERAVE 404 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCC--chHHHHHHHHhcc----ChHHHHHHHHHHHH
Confidence 99999999999999999999999987 445566789999999999 5599999998884 35669999999999
Q ss_pred hCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhcc-
Q psy6461 171 LFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD- 249 (703)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 249 (703)
..|.+.+.|..+. +...|+.|.++++++- ..-++...+|+..+.+.+.++.. .-++.++.+++..+..
T Consensus 405 ccp~s~dLwlAla-rLetYenAkkvLNkaR-------e~iptd~~IWitaa~LEE~ngn~---~mv~kii~rgl~~L~~n 473 (913)
T KOG0495|consen 405 CCPQSMDLWLALA-RLETYENAKKVLNKAR-------EIIPTDREIWITAAKLEEANGNV---DMVEKIIDRGLSELQAN 473 (913)
T ss_pred hccchHHHHHHHH-HHHHHHHHHHHHHHHH-------hhCCCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHhhc
Confidence 9999998887655 6778999999999886 34567789999999998877732 1445566666554432
Q ss_pred ---chhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHH
Q psy6461 250 ---QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326 (703)
Q Consensus 250 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (703)
-.-+.|+.-+......|..-.|..+...++...-...+..+-|..-++.-.... .+.-
T Consensus 474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~-------------------~~~c 534 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRP-------------------AIEC 534 (913)
T ss_pred ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcc-------------------hHHH
Confidence 134567777777777777777777777777654444443333433322211110 0111
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH
Q psy6461 327 RLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV 404 (703)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 404 (703)
..+.|.. +++.+|..-..|+..+.+.. |..+....++.+++..+|. .+.+|+++++.++.
T Consensus 535 arAVya~------------alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk------ae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 535 ARAVYAH------------ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK------AEILWLMYAKEKWK 596 (913)
T ss_pred HHHHHHH------------HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc------chhHHHHHHHHHHh
Confidence 2222332 37778888888888777654 7788888888888887643 56688888888888
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLW 484 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
.|+...|+.++.++...+|++. ++|+.-..++.....++.|+.+|.++....|. .++|
T Consensus 597 agdv~~ar~il~~af~~~pnse----eiwlaavKle~en~e~eraR~llakar~~sgT------------------eRv~ 654 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSE----EIWLAAVKLEFENDELERARDLLAKARSISGT------------------ERVW 654 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcH----HHHHHHHHHhhccccHHHHHHHHHHHhccCCc------------------chhh
Confidence 8888888888888888888876 88888888888888888888888888887775 6888
Q ss_pred HHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHH
Q psy6461 485 SLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAK 560 (703)
Q Consensus 485 ~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 560 (703)
..++.++..+++. ++++++++.| |.+..+|+...+.... +++++.||..|..+++.+|+. +.+|+.++.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~---~~~ie~aR~aY~~G~k~cP~~--ipLWllLak 727 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQ---MENIEMAREAYLQGTKKCPNS--IPLWLLLAK 727 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHH---HHHHHHHHHHHHhccccCCCC--chHHHHHHH
Confidence 8888888877776 6778888888 6677778777754332 356799999999999999998 569999999
Q ss_pred HHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch-----------------
Q psy6461 561 LEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT----------------- 623 (703)
Q Consensus 561 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----------------- 623 (703)
++.+.|+..+|+.+++++...+|++ ..+|...+.++.+.|+.+.|+.+..+||+.+|++..
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKN--ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 9999999999999999999999998 568999999999999999999999999999997743
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6461 624 -----------RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKR 687 (703)
Q Consensus 624 -----------~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 687 (703)
..+.+..+.+.+...++++|+.+|.||+++ +|+ .++.|.++..|+..+|+.++-++|+.++.
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~-d~d-~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK-DPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 004455666667778999999999999999 566 79999999999999999999999986543
No 4
>KOG1915|consensus
Probab=100.00 E-value=1.6e-43 Score=339.98 Aligned_cols=455 Identities=25% Similarity=0.431 Sum_probs=391.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHH
Q psy6461 48 IINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRH 127 (703)
Q Consensus 48 ~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 127 (703)
+-++.||..+..+--+...|+.|++++.++ +++..|+.+|+|||..+..+..+|+.|+.++++...+..||.
T Consensus 57 RkRkefEd~irrnR~~~~~WikYaqwEesq--------~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARN 128 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRLNMQVWIKYAQWEESQ--------KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARN 128 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHH
Confidence 346788888888888999999999998876 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhccccccc
Q psy6461 128 VFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVS 207 (703)
Q Consensus 128 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 207 (703)
+++||+...| ....+|..|..++...|+...|+++|++-+...|+.
T Consensus 129 v~dRAvt~lP--RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-------------------------------- 174 (677)
T KOG1915|consen 129 VWDRAVTILP--RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-------------------------------- 174 (677)
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH--------------------------------
Confidence 9999999999 558999999999989999999999999988776654
Q ss_pred ccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCccc
Q psy6461 208 KHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRD 287 (703)
Q Consensus 208 ~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 287 (703)
.+|..++++..+.++.+.|+.+|++.+-..|.+
T Consensus 175 ---------------------------------------------qaW~sfI~fElRykeieraR~IYerfV~~HP~v-- 207 (677)
T KOG1915|consen 175 ---------------------------------------------QAWLSFIKFELRYKEIERARSIYERFVLVHPKV-- 207 (677)
T ss_pred ---------------------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHheecccH--
Confidence 579999999999999999999999988877764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCC
Q psy6461 288 FTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGK 367 (703)
Q Consensus 288 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 367 (703)
+-|..|+.||... |+
T Consensus 208 --~~wikyarFE~k~---------------------------------------------------------------g~ 222 (677)
T KOG1915|consen 208 --SNWIKYARFEEKH---------------------------------------------------------------GN 222 (677)
T ss_pred --HHHHHHHHHHHhc---------------------------------------------------------------Cc
Confidence 4567777777654 77
Q ss_pred chhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHH
Q psy6461 368 PLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEE 447 (703)
Q Consensus 368 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (703)
...++.+|++|++.+.... ....++..+|.+...++++++|+.+|+-||..-|++.. ..++-.|..++-+.|+..
T Consensus 223 ~~~aR~VyerAie~~~~d~---~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra--eeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDE---EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA--EELYKKYTAFEKQFGDKE 297 (677)
T ss_pred HHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHHhcchh
Confidence 7788999999998864432 24678899999999999999999999999999888732 388999999999988765
Q ss_pred HHHH--------HHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHH
Q psy6461 448 AALR--------LMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDI 515 (703)
Q Consensus 448 ~A~~--------~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~ 515 (703)
.... -|+.-+..+|-+ -+.|..|.++.+..|+. +.|++||...|....-..
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~n-----------------YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~ 360 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYN-----------------YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY 360 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCC-----------------chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence 4322 456667788874 79999999999999887 889999999976554444
Q ss_pred HHHHHHH-----HHHHhCCCChhHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH
Q psy6461 516 WNTYLTK-----FLSRYGGTKLERARDLFEQCLEACPPRY--AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF 588 (703)
Q Consensus 516 ~~~y~~~-----~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 588 (703)
|..|++. +.+.....+.++++++|+.|+++.|+.- ...+|+.||+++.++.+...|++++-.|+..+|++
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~--- 437 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD--- 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---
Confidence 4444432 2223345778999999999999999862 24799999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHH
Q psy6461 589 EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKS 668 (703)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 668 (703)
-+|.+||.++.+++++|++|.+|++-|+..|++.. .|..||.++.++|+.++|+.+|+-|++...-+.+..+|..|++
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~--~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY--AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH--HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 69999999999999999999999999999999887 8999999999999999999999999987445668999999999
Q ss_pred HHHHcCCHHHHHHHH
Q psy6461 669 FEITHGNEDTMREML 683 (703)
Q Consensus 669 ~~~~~g~~~~~~~~~ 683 (703)
|+...|..+.++.+.
T Consensus 516 FEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 516 FEIEEGEFEKARALY 530 (677)
T ss_pred hhhhcchHHHHHHHH
Confidence 999999999999887
No 5
>KOG0495|consensus
Probab=100.00 E-value=4.3e-34 Score=285.21 Aligned_cols=546 Identities=21% Similarity=0.297 Sum_probs=429.7
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
...++..+.+|.+.+.|+.-+++.- .+.|+.+.-.|+...|.|+.+|+..+.++ .+...-.+++.+
T Consensus 306 ~~I~~GCe~cprSeDvWLeaiRLhp---~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE-----------~~~~~K~RVlRK 371 (913)
T KOG0495|consen 306 NLIMKGCEECPRSEDVWLEAIRLHP---PDVAKTVVANAVRFLPTSVRLWLKAADLE-----------SDTKNKKRVLRK 371 (913)
T ss_pred HHHHHHHhhCCchHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCChhhhhhHHhhh-----------hHHHHHHHHHHH
Confidence 3456777889999999999888766 44588899999999999999999988875 345556889999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
||...|++..+|-....+ .+.+.||.++.||.+-.| .+.++|..+++++. ++.|.+++.++-+..|.+.+
T Consensus 372 ALe~iP~sv~LWKaAVel----E~~~darilL~rAveccp--~s~dLwlAlarLet----YenAkkvLNkaRe~iptd~~ 441 (913)
T KOG0495|consen 372 ALEHIPRSVRLWKAAVEL----EEPEDARILLERAVECCP--QSMDLWLALARLET----YENAKKVLNKAREIIPTDRE 441 (913)
T ss_pred HHHhCCchHHHHHHHHhc----cChHHHHHHHHHHHHhcc--chHHHHHHHHHHHH----HHHHHHHHHHHHhhCCCChh
Confidence 999999999999888777 455569999999999999 55899999998853 68899999999999999999
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhh--ccchh
Q psy6461 178 DYIEYL---SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRY--TDQLG 252 (703)
Q Consensus 178 ~~~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 252 (703)
.|+... ...|+.+-..++..+.+.--. ..........|+.-+......... ...-+++...+.-. .++..
T Consensus 442 IWitaa~LEE~ngn~~mv~kii~rgl~~L~--~ngv~i~rdqWl~eAe~~e~agsv---~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 442 IWITAAKLEEANGNVDMVEKIIDRGLSELQ--ANGVEINRDQWLKEAEACEDAGSV---ITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh--hcceeecHHHHHHHHHHHhhcCCh---hhHHHHHHHHHhhccccchhH
Confidence 887543 467777776677666542100 011223456677766554433221 23334554443322 23345
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLE 332 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (703)
..|+.-++.+...+-++-|+.+|..+++.+|... .+|.+...|++.++.- +...+.++
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~---slWlra~~~ek~hgt~-------------------Esl~Allq 574 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKK---SLWLRAAMFEKSHGTR-------------------ESLEALLQ 574 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh---HHHHHHHHHHHhcCcH-------------------HHHHHHHH
Confidence 6899999999999999999999999999998654 7999999998876421 11111222
Q ss_pred HHHhhhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHH
Q psy6461 333 DLMERRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLED 410 (703)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 410 (703)
+ ++...|....+|+.++.. ..|+...|+.++.++++.. +++.++|+.-.+++..+.++++
T Consensus 575 k------------av~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~------pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 575 K------------AVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN------PNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred H------------HHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC------CCcHHHHHHHHHHhhccccHHH
Confidence 2 377889999999999874 4599999999999998863 3578899999999999999999
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHH
Q psy6461 411 ARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADL 490 (703)
Q Consensus 411 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (703)
|+.+|.++....|+. .+|+.++.++.-.++.++|+.++++|++.+|.. ..+|.+.+++
T Consensus 637 aR~llakar~~sgTe-----Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f-----------------~Kl~lmlGQi 694 (913)
T KOG0495|consen 637 ARDLLAKARSISGTE-----RVWMKSANLERYLDNVEEALRLLEEALKSFPDF-----------------HKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHhccCCcc-----hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-----------------HHHHHHHhHH
Confidence 999999998887664 899999999999999999999999999999984 8999999999
Q ss_pred HHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q psy6461 491 EESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHG 566 (703)
Q Consensus 491 ~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 566 (703)
++..+++ ..|..+++.. |.+..+|..... +.+. .+.+-+||.+++++...+|++ ..+|+..++++.+.|
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~c--P~~ipLWllLak-leEk--~~~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKC--PNSIPLWLLLAK-LEEK--DGQLVRARSILDRARLKNPKN--ALLWLESIRMELRAG 767 (913)
T ss_pred HHHHHHHHHHHHHHHhccccC--CCCchHHHHHHH-HHHH--hcchhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcC
Confidence 9998887 4566666655 567778887763 3443 357899999999999999999 679999999999999
Q ss_pred ChHHHHHHHHHHhhccCcchHHHHHHHHHHHH------------------------------HHhcCchHHHHHHHHHHH
Q psy6461 567 LARHAMAVYERATGAVLPEEMFEMFNIYIKKA------------------------------AEIYGIPKTRQIYERAIE 616 (703)
Q Consensus 567 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~------------------------------~~~~~~~~A~~~~~~al~ 616 (703)
+.+.|..+..+|++.+|.+. .+|..-|-++ .....+++||.-|+++++
T Consensus 768 n~~~a~~lmakALQecp~sg--~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 768 NKEQAELLMAKALQECPSSG--LLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred CHHHHHHHHHHHHHhCCccc--hhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999874 3444333322 234678999999999999
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHH
Q psy6461 617 SLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWK 667 (703)
Q Consensus 617 ~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 667 (703)
.+|++.. +|.-+-.++...|.-+.-..+|.+|.+. +|. .+.+|....
T Consensus 846 ~d~d~GD--~wa~fykfel~hG~eed~kev~~~c~~~-EP~-hG~~W~avS 892 (913)
T KOG0495|consen 846 KDPDNGD--AWAWFYKFELRHGTEEDQKEVLKKCETA-EPT-HGELWQAVS 892 (913)
T ss_pred cCCccch--HHHHHHHHHHHhCCHHHHHHHHHHHhcc-CCC-CCcHHHHHh
Confidence 9999988 8999999999999999999999999987 555 677887644
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-33 Score=331.59 Aligned_cols=593 Identities=16% Similarity=0.093 Sum_probs=446.8
Q ss_pred CchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q psy6461 16 EDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNT 94 (703)
Q Consensus 16 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~ 94 (703)
....|+++++.+|.+...+..++..+. .|++++|...|+++++..|.+...+..++...... |++++|...
T Consensus 280 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~ 351 (899)
T TIGR02917 280 ARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL--------GRVDEAIAT 351 (899)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC--------CCHHHHHHH
Confidence 336789999999998888888887777 89999999999999999999988888877776543 889999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q psy6461 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174 (703)
Q Consensus 95 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 174 (703)
+++++...|.++.+|..++.++...|++++|...|+++++..| .....|..++.++...|++++|+..|+++++..|.
T Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 429 (899)
T TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP--ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999999999888 45777888888888889999999999999998887
Q ss_pred CHHHH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccch
Q psy6461 175 DAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQL 251 (703)
Q Consensus 175 ~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (703)
..... +..+...|++++|...+..+... .+.....|..++.+.....+. ..+...++..+...|. .
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~-~ 498 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKK-------QPDNASLHNLLGAIYLGKGDL---AKAREAFEKALSIEPD-F 498 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCCcHHHHHHHHHHHhCCCH---HHHHHHHHHHHhhCCC-c
Confidence 76543 34456789999999988887642 122334555555554433321 1334445555554443 3
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH--HH---HHHHh-hhCCCCCCcch----
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL--NK---RMEEI-AENDTPSEEDD---- 321 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~--~~---~~~~~-~~~~~~~~~~~---- 321 (703)
...+..++.++...|++++|...|++++...|.... .+..........+ +. ..... ...+.......
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 575 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR---AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ 575 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 457778888888888888888888888877665332 2222222111110 00 01111 01111000000
Q ss_pred -----HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHH
Q psy6461 322 -----IELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTL 394 (703)
Q Consensus 322 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 394 (703)
.....+...++. .+..+|.+...|..++.++. |++++|+..|++++... | ..+..
T Consensus 576 ~~~~~~~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~ 637 (899)
T TIGR02917 576 YYLGKGQLKKALAILNE------------AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-P-----DSALA 637 (899)
T ss_pred HHHHCCCHHHHHHHHHH------------HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-----CChHH
Confidence 001112222222 35667888888888777554 88888999998888763 2 24567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
|..++.++...|++++|..+|+++++..|.+. ..|..++.++...|++++|..++++.....|.+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 702 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNT----EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA----------- 702 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-----------
Confidence 88888888888999999999999988888876 788888888888899999999999888888774
Q ss_pred HHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
...+...+.++...|++ ..|++++...|.+ ..+..++.... ..|+.++|...++++++..|++
T Consensus 703 ------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~---~~g~~~~A~~~~~~~l~~~~~~- 769 (899)
T TIGR02917 703 ------ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALL---ASGNTAEAVKTLEAWLKTHPND- 769 (899)
T ss_pred ------hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCC-
Confidence 67888888888888887 5677777766554 33333332222 3678999999999999999998
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
+.++..++.++...|++++|...|+++++..|++. .++...+......|+ ++|+.+++++++..|+++. ++..+
T Consensus 770 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~--~~~~~ 843 (899)
T TIGR02917 770 -AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA--VVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA--ILDTL 843 (899)
T ss_pred -HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH--HHHHH
Confidence 67999999999999999999999999999999874 455666666667778 8899999999999999876 78899
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIK 686 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 686 (703)
+.++...|++++|..+|+++++..+. ++.++.+++......|..++|+++++..
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPE--AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999998544 6899999999999999999999998553
No 7
>KOG2047|consensus
Probab=100.00 E-value=6.5e-35 Score=290.67 Aligned_cols=547 Identities=20% Similarity=0.340 Sum_probs=405.1
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh---------cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCC
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK---------NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKV 82 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~---------~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~ 82 (703)
...+....||++++..|.|++.|..|++... ...++.....||+++-.-...+.+|+.|+++...+
T Consensus 41 p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q----- 115 (835)
T KOG2047|consen 41 PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQ----- 115 (835)
T ss_pred ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----
Confidence 3445568999999999999999999995543 24478888999999999999999999999998876
Q ss_pred CCchhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc---------------------
Q psy6461 83 ITDPSYEDVNNTFERSLVFMHK--MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT--------------------- 139 (703)
Q Consensus 83 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--------------------- 139 (703)
|++...+..|++||...|- +..+|-.|..+..+.+=.+-+.++|+|-|+..|..
T Consensus 116 ---~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~l 192 (835)
T KOG2047|consen 116 ---GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRL 192 (835)
T ss_pred ---chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHH
Confidence 8899999999999999884 66899999999888888888889999998888841
Q ss_pred ---------------cccccHHHHHHHHHhcCCh---HHHHHHHHHHHhhCCCCHH----HHHHHHHhcCCHHHHHHHHH
Q psy6461 140 ---------------QHHRVWPLYLSFVKSHAVP---ETAVRVFRRYLKLFPEDAE----DYIEYLSSIERLDEAAVKLA 197 (703)
Q Consensus 140 ---------------~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~A~~~~~ 197 (703)
.+..+|..++.+.....+. -...++++.++...|+... .++++|++.|.++.|+.+|+
T Consensus 193 a~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 193 ATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred HHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 1234444444443332111 1233455555555555443 23567899999999999998
Q ss_pred Hhhcc----ccc----------c--------c----ccCCch----hh---hHHHH----------HHHHhcCcccccc-
Q psy6461 198 YIVNK----ESF----------V--------S----KHGKSN----HQ---LWNEL----------CEMISQNPDKIRS- 233 (703)
Q Consensus 198 ~~~~~----~~~----------~--------~----~~~~~~----~~---~w~~~----------~~~l~~~~~~~~~- 233 (703)
+++.. ..| . . ..+... .+ .|... ..+++.+|.++..
T Consensus 273 eai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 273 EAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 88742 111 0 0 000000 00 01110 1344455554431
Q ss_pred ----------------ccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh-hcCCcccHHHHHHHHH
Q psy6461 234 ----------------LNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ-TVTTVRDFTQVFDAYA 296 (703)
Q Consensus 234 ----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~l~~~~~ 296 (703)
+..+++.+......++..+.+|..+|++|...|+.+.|+.+|+++++ .++++.++..+|+.|+
T Consensus 353 ~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 353 HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA 432 (835)
T ss_pred HhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 22223333333444567788999999999999999999999999999 5688889999999999
Q ss_pred HHHHHHHHH-----HHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCch
Q psy6461 297 QFEELSLNK-----RMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPL 369 (703)
Q Consensus 297 ~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~ 369 (703)
.+|....+. .+....-.|.... +.-|+.-.. ....--.+...|..++.+.+ |.++
T Consensus 433 emElrh~~~~~Al~lm~~A~~vP~~~~---------~~~yd~~~p---------vQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 433 EMELRHENFEAALKLMRRATHVPTNPE---------LEYYDNSEP---------VQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCCCchh---------hhhhcCCCc---------HHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 998765432 1211111111100 000000000 00000125678999998766 9999
Q ss_pred hHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC-CCcchHHHHHHHHHHHHHH---cCC
Q psy6461 370 DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY-TKVEDLATVWCEWAELELR---AGQ 445 (703)
Q Consensus 370 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~---~~~ 445 (703)
....+|++.++..- -.|++.++||.+++.+..++++-++|++++.+++ .++ .++|+.|..-... .-+
T Consensus 495 stk~vYdriidLri------aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v---~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 495 STKAVYDRIIDLRI------ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV---YDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH---HHHHHHHHHHHHHHhcCCC
Confidence 99999999998721 2578999999999999999999999999999843 232 4899998875443 347
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLT 521 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~ 521 (703)
++.|+.+|++|+..+|.. ....++..|+.+++..|-. ++|++|-+..+......+|..||.
T Consensus 566 lEraRdLFEqaL~~Cpp~---------------~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 566 LERARDLFEQALDGCPPE---------------HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHHHhcCCHH---------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999853 2467899999999998865 889999988887889999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 522 KFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 522 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
++.+.+| +...|.+|++|++.-|++-...+.+.+++++.+.|..+.|+.+|.-+.+..++.....+|..|-.|+.+.
T Consensus 631 kaae~yG---v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH 707 (835)
T KOG2047|consen 631 KAAEIYG---VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH 707 (835)
T ss_pred HHHHHhC---CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc
Confidence 9998886 5899999999999999986678999999999999999999999999999998877788999999999999
Q ss_pred cCchHHHHHH
Q psy6461 602 YGIPKTRQIY 611 (703)
Q Consensus 602 ~~~~~A~~~~ 611 (703)
|+-+.-++++
T Consensus 708 GnedT~keML 717 (835)
T KOG2047|consen 708 GNEDTYKEML 717 (835)
T ss_pred CCHHHHHHHH
Confidence 9976666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.4e-33 Score=326.21 Aligned_cols=598 Identities=13% Similarity=0.046 Sum_probs=456.8
Q ss_pred CCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q psy6461 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 93 (703)
+....++++++.+|.+...+...+.... .|++++|...|+++++..|.+...+...+..... .|++++|..
T Consensus 245 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~g~~~~A~~ 316 (899)
T TIGR02917 245 EAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ--------LGNLEQAYQ 316 (899)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH--------cCCHHHHHH
Confidence 3446889999999999888887777766 8999999999999999999998888777766544 389999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 173 (703)
.|+++++..|.++..+..++.++...|++++|...+++++...|. ...+|..++..+...|++++|...|+++++.+|
T Consensus 317 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 394 (899)
T TIGR02917 317 YLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD--DPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394 (899)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999884 577888899999999999999999999999999
Q ss_pred CCHHHHH---HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccc
Q psy6461 174 EDAEDYI---EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250 (703)
Q Consensus 174 ~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (703)
++...+. ..+...|++++|+..+..++...+. ....+..++.......+. ..+..+++......|.
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~- 463 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-------LGRADLLLILSYLRSGQF---DKALAAAKKLEKKQPD- 463 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-------chhhHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCC-
Confidence 9887654 3456899999999999998753321 112222222222221111 1233445555555443
Q ss_pred hhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH--HHHHHH---HHHHhh-hCCCCCCcch--H
Q psy6461 251 LGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE--ELSLNK---RMEEIA-ENDTPSEEDD--I 322 (703)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e--~~~~~~---~~~~~~-~~~~~~~~~~--~ 322 (703)
....|..+|..+...|++++|...|++++...|.... .+...+... .+..+. ....+. ..+....... .
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 540 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP---AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3568999999999999999999999999998776432 111111111 111111 111111 1111000000 0
Q ss_pred -------HHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhH
Q psy6461 323 -------ELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHT 393 (703)
Q Consensus 323 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 393 (703)
....+...+++ .+..+|.+...+..++..+. |++++|...+++++...+ ..+.
T Consensus 541 ~~~~~~~~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~ 602 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEK------------AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP------DSPE 602 (899)
T ss_pred HHHHHcCCHHHHHHHHHH------------HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC------CCHH
Confidence 00111112222 35668888888888777554 889999999998877532 3467
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
+|..++.++...|++++|+..|+++++..|.++ ..+..++.++.+.|++++|..+|+++++..|++
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 668 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA----LALLLLADAYAVMKNYAKAITSLKRALELKPDN---------- 668 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------
Confidence 899999999999999999999999999888887 788899999999999999999999999999885
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
...|..++.++...|++ .+++++....|. ....|...+.... ..|++++|...|++++...|++
T Consensus 669 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 669 -------TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK--AALGFELEGDLYL---RQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--ChHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCCCc
Confidence 78888889998888887 445555544433 3333333332222 3578999999999999999986
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK 629 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (703)
..+..++.++...|++++|...++++++..|++ ..++...+..+...|++++|..+|+++++..|+++. ++..
T Consensus 737 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~ 809 (899)
T TIGR02917 737 ---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND--AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV--VLNN 809 (899)
T ss_pred ---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH--HHHH
Confidence 478889999999999999999999999999987 456666777777889999999999999999998765 7889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
++.++...|+ .+|+..++++++.. |+ ++.++..++.++...|..++|.+.++.+-...
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLA-PN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhC-CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999 88999999999984 44 58899999999999999999999986555543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.5e-30 Score=306.71 Aligned_cols=602 Identities=11% Similarity=0.020 Sum_probs=410.8
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------cccCCCCchhH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQ--------VKGKVITDPSY 88 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--------~~~~~~~~~~~ 88 (703)
..+++++..+|++++++...+++.. .|+.++|...++++++..|.+...|.....+.... ........|++
T Consensus 49 ~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~ 128 (1157)
T PRK11447 49 QSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRT 128 (1157)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCH
Confidence 6788999999999999999999998 99999999999999999999999875332211100 00001124899
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH-HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHH
Q psy6461 89 EDVNNTFERSLVFMHKMPRIWLDYGRFL-MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR 167 (703)
Q Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 167 (703)
++|...|++++...|.++.+-..|.... ...|+.++|+..|+++++.+| .+..++..++.++...|++++|+..|++
T Consensus 129 ~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl~~l~~ 206 (1157)
T PRK11447 129 EEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGFAVLEQ 206 (1157)
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999999999998876544443333 345899999999999999999 4588899999999999999999999999
Q ss_pred HHhhCCCCHH---HHHHHHHhcCCHHHHHHHHHHhhccccc-c--------------cccCCchhhhHHHHHHHHhcCcc
Q psy6461 168 YLKLFPEDAE---DYIEYLSSIERLDEAAVKLAYIVNKESF-V--------------SKHGKSNHQLWNELCEMISQNPD 229 (703)
Q Consensus 168 ~l~~~p~~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~--------------~~~~~~~~~~w~~~~~~l~~~~~ 229 (703)
++...+.... .|.+.+...+....+...+...+...+- . ....+.... ...........+
T Consensus 207 ~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~--~~~G~~~~~~g~ 284 (1157)
T PRK11447 207 MAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA--RAQGLAAVDSGQ 284 (1157)
T ss_pred HhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH--HHHHHHHHHCCC
Confidence 9876554322 2222222222223333333222210000 0 000000000 000111111111
Q ss_pred ccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHH---HHH---HHHHHHHHHH
Q psy6461 230 KIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQ---VFD---AYAQFEELSL 303 (703)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~---l~~---~~~~~e~~~~ 303 (703)
...+...++..+...|+ ...++..+|..+.+.|++++|+..|+++++..|+...... +.. .+..+.. +
T Consensus 285 ---~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~--g 358 (1157)
T PRK11447 285 ---GGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ--G 358 (1157)
T ss_pred ---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH--H
Confidence 01344556666666654 3678999999999999999999999999998886542111 100 0000000 0
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHh
Q psy6461 304 NKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKT 381 (703)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~ 381 (703)
.... .......+...|+.+ +..+|.+..++..++.++. |++++|+..|+++++.
T Consensus 359 ~~~~------------~~g~~~eA~~~~~~A------------l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 359 DAAL------------KANNLAQAERLYQQA------------RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHHH------------HCCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0000 000122233344443 5567777777766665543 7777777777777765
Q ss_pred cCCCccC-C-----------------------------------chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC
Q psy6461 382 VDPKLAV-G-----------------------------------KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK 425 (703)
Q Consensus 382 ~~~~~~~-~-----------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 425 (703)
.+..... . -....+...+..+...|++++|+..|+++++.+|.+
T Consensus 415 ~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~ 494 (1157)
T PRK11447 415 DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494 (1157)
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3221100 0 001123345566667899999999999999999998
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhh
Q psy6461 426 VEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIA 505 (703)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~ 505 (703)
+ .+++.++.++.+.|++++|...+++++...|++ +..++.++.++...++. ++|+.
T Consensus 495 ~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-----------------~~~~~a~al~l~~~~~~---~~Al~ 550 (1157)
T PRK11447 495 V----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-----------------PEQVYAYGLYLSGSDRD---RAALA 550 (1157)
T ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------------HHHHHHHHHHHHhCCCH---HHHHH
Confidence 7 889999999999999999999999999999985 67777777777666665 33333
Q ss_pred cC---CCC----chHHHH-----HHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHH
Q psy6461 506 LF---KWP----YIFDIW-----NTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMA 573 (703)
Q Consensus 506 ~~---~~~----~~~~~~-----~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 573 (703)
.+ +.. ....+- ..++.........|+.++|+.+++ ..|.+ +..++.++.++...|++++|+.
T Consensus 551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~--~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPS--TRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCC--chHHHHHHHHHHHcCCHHHHHH
Confidence 22 111 100000 001111112224678899998877 57887 5688999999999999999999
Q ss_pred HHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 574 VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 574 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.|++++...|++ ...+...+..+...|++++|+..++++++..|+++. .+..++.++...|++++|...|+++++.
T Consensus 625 ~y~~al~~~P~~--~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~--~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 625 AYQRVLTREPGN--ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN--TQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH--HHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999999998 456677777788889999999999999999998776 7888899999999999999999999987
Q ss_pred cCCCC----ChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6461 654 CDPRV----TAGFWAAWKSFEITHGNEDTMREMLRIKR 687 (703)
Q Consensus 654 ~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 687 (703)
.+++. ...++...+.+....|..++|...++.+-
T Consensus 701 ~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 701 AKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54331 23577788999999999999999986653
No 10
>KOG4626|consensus
Probab=100.00 E-value=6.2e-33 Score=275.28 Aligned_cols=392 Identities=16% Similarity=0.163 Sum_probs=319.8
Q ss_pred HHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHH
Q psy6461 21 EEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSL 99 (703)
Q Consensus 21 e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 99 (703)
+.+++++|...+.+-.++...+ .|++..|...|+.+++..|+..+.|+.++..+..+ |+.+.|.+.|..|+
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~--------~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQ--------GDLELAVQCFFEAL 177 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhc--------CCCcccHHHHHHHH
Confidence 4456677777777777777777 77777777777777777777777777777666543 66677777777777
Q ss_pred HhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 100 VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 100 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
+.+|+..-+....++++..+|++.+|...|.+|+...| ...-+|..++.....+|+...|+..|+++++++|+..
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp--~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~--- 252 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP--CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL--- 252 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC--ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch---
Confidence 77777777777777777777777777777777777777 4567777777777777777777777777777777653
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHH
Q psy6461 180 IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLA 259 (703)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (703)
+++.+||
T Consensus 253 -------------------------------------------------------------------------dAYiNLG 259 (966)
T KOG4626|consen 253 -------------------------------------------------------------------------DAYINLG 259 (966)
T ss_pred -------------------------------------------------------------------------HHHhhHH
Confidence 6788999
Q ss_pred HHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhh
Q psy6461 260 DYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRL 339 (703)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (703)
++|...+.+++|...|.+++...|... ..+
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A---~a~----------------------------------------------- 289 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRPNHA---VAH----------------------------------------------- 289 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCcch---hhc-----------------------------------------------
Confidence 999999999999999999998777422 111
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 340 LLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDK 417 (703)
Q Consensus 340 ~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 417 (703)
-.++-++ +|..+.|++.|++|+.. .| +.++++.++|..+...|+..+|...|.+
T Consensus 290 ------------------gNla~iYyeqG~ldlAI~~Ykral~~-~P-----~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 290 ------------------GNLACIYYEQGLLDLAIDTYKRALEL-QP-----NFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred ------------------cceEEEEeccccHHHHHHHHHHHHhc-CC-----CchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 0111111 28889999999999987 34 5789999999999999999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 418 ATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
+|..+|+++ .....++.++...|++++|..+|.++++..|.. ...++.++.++..+|++
T Consensus 346 aL~l~p~ha----dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-----------------aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 346 ALRLCPNHA----DAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-----------------AAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHhCCccH----HHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-----------------hhhhhhHHHHHHhcccH
Confidence 999999998 888999999999999999999999999999984 67788888888887776
Q ss_pred hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 498 KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYER 577 (703)
Q Consensus 498 ~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 577 (703)
++|...|+.++++.|.. ...+.++|..+-..|+.+.|.+.|.+
T Consensus 405 -----------------------------------~~Ai~~YkealrI~P~f--Ada~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 405 -----------------------------------DDAIMCYKEALRIKPTF--ADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred -----------------------------------HHHHHHHHHHHhcCchH--HHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 99999999999999997 67999999999999999999999999
Q ss_pred HhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 578 ATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEME 634 (703)
Q Consensus 578 al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 634 (703)
|+..+|.- .+........+...|++.+|.+-|+.||+..||.|. .+..++..+
T Consensus 448 AI~~nPt~--AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd--A~cNllh~l 500 (966)
T KOG4626|consen 448 AIQINPTF--AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD--AYCNLLHCL 500 (966)
T ss_pred HHhcCcHH--HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch--hhhHHHHHH
Confidence 99999975 456677778888899999999999999999999887 566665544
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7.5e-29 Score=292.34 Aligned_cols=570 Identities=14% Similarity=0.077 Sum_probs=377.9
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
|...+..+.-+++.. .++.+.|+..++|++.++|++++++...+.+.... |+.++|.+.++++++..|+++
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~--------g~~~~A~~~l~~l~~~~P~~~ 96 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQ--------GDSDGAQKLLDRLSQLAPDSN 96 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHhhCCCCh
Confidence 344455566677777 99999999999999999999999999988887654 899999999999999999998
Q ss_pred HHH----------------HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHH-HHHHHhcCChHHHHHHHHHHH
Q psy6461 107 RIW----------------LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLY-LSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 107 ~~~----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~l 169 (703)
.++ +..+.++...|++++|...|+++++..|.+ ..+-..| .......|+.++|+..|++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~--~~la~~y~~~~~~~~g~~~~A~~~L~~ll 174 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPE--LDLAVEYWRLVAKLPAQRPEAINQLQRLN 174 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCC--hHHHHHHHHHHhhCCccHHHHHHHHHHHH
Confidence 875 556678888999999999999999988842 2221222 223334588999999999999
Q ss_pred hhCCCCHHHH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHH--------------HHHhcCccccc
Q psy6461 170 KLFPEDAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELC--------------EMISQNPDKIR 232 (703)
Q Consensus 170 ~~~p~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--------------~~l~~~~~~~~ 232 (703)
+.+|++...+ ..++...|++++|+..|+++...+.. .......|.... ..+..+|....
T Consensus 175 ~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~----~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 175 ADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG----RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 9999998854 45567899999999999998753321 112233443322 12222332211
Q ss_pred cccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6461 233 SLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312 (703)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 312 (703)
.......+........+. .......|..+...|++++|+..|+++++..|.... .+...+......+
T Consensus 251 ~~~A~~~L~~~~~~~~dp-~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~---a~~~Lg~~~~~~g--------- 317 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADP-AFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSE---ALGALGQAYSQQG--------- 317 (1157)
T ss_pred HHHHHHHHHHHHHhccCc-chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcC---------
Confidence 111111122111111111 111234588899999999999999999999886542 2222221111110
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcH--HHHHH------------HH--hhhcCCchhHHHHHH
Q psy6461 313 NDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNV--LEWHK------------RV--RLFDGKPLDIIRTYT 376 (703)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~--~~~~~------------~~--~~~~~~~~~a~~~~~ 376 (703)
....++..|+++ ++.+|++. ..|.. .+ .+..|++++|+..|+
T Consensus 318 ----------~~~eA~~~l~~A------------l~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 318 ----------DRARAVAQFEKA------------LALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred ----------CHHHHHHHHHHH------------HHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 112233344443 44555533 22211 11 123489999999999
Q ss_pred HHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH----------------
Q psy6461 377 EAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE---------------- 440 (703)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---------------- 440 (703)
+++... | ....++..+|.++...|++++|+..|+++++.+|.+. ..+..++.++
T Consensus 376 ~Al~~~-P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~----~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 376 QARQVD-N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT----NAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHhC-C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 999873 3 3467889999999999999999999999999999886 4444444443
Q ss_pred --------------------------HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhc
Q psy6461 441 --------------------------LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESF 494 (703)
Q Consensus 441 --------------------------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (703)
...|++++|+..|+++++..|++ +.++..++.++...
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-----------------~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-----------------VWLTYRLAQDLRQA 508 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHc
Confidence 34556666666666666666653 45555556666655
Q ss_pred CCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc--------hHHHHHHHHHHH
Q psy6461 495 GTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY--------AKTLYLLYAKLE 562 (703)
Q Consensus 495 ~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--------~~~~~~~~a~~~ 562 (703)
|+. ..|++++...|.. ...+..+...+ ...++.++|...++++.....+.. .....+..+..+
T Consensus 509 G~~~~A~~~l~~al~~~P~~--~~~~~a~al~l---~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPND--PEQVYAYGLYL---SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHH---HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 555 3344444433322 22222222111 123455566665555332211100 001233455556
Q ss_pred HHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH
Q psy6461 563 EEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDR 642 (703)
Q Consensus 563 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 642 (703)
...|++++|+.+++ ..|.+. .++......+.+.|++++|+..|+++++..|+++. .++.++.++...|++++
T Consensus 584 ~~~G~~~eA~~~l~----~~p~~~--~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~--a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 584 RDSGKEAEAEALLR----QQPPST--RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD--ARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHCCCHHHHHHHHH----hCCCCc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHH
Confidence 66667777766655 356553 35566677777889999999999999999999876 89999999999999999
Q ss_pred HHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6461 643 ARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRS 688 (703)
Q Consensus 643 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 688 (703)
|+..|+++++.. |+ +..++..++......|+.++|.+.++.+..
T Consensus 656 A~~~l~~ll~~~-p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 656 ARAQLAKLPATA-ND-SLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHhccC-CC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999999999874 44 577888889989999999999988865443
No 12
>KOG4626|consensus
Probab=100.00 E-value=5.8e-30 Score=254.31 Aligned_cols=449 Identities=15% Similarity=0.135 Sum_probs=358.2
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHH
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIW 109 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 109 (703)
...-++++.-+. .|++.+|.+...-.-+.+|.+.+-....... .....+++...+.-..+++.+|.-.+.+
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai--------~~q~~r~d~s~a~~~~a~r~~~q~ae~y 119 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAI--------FFQGSRLDKSSAGSLLAIRKNPQGAEAY 119 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhh--------hhcccchhhhhhhhhhhhhccchHHHHH
Confidence 334445554333 7889999888888888888766543332221 1122446666777777889999999999
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH---HHHHHhc
Q psy6461 110 LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY---IEYLSSI 186 (703)
Q Consensus 110 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~ 186 (703)
-++++++...|+++.|...|+.+++..| ...+.|..++..+...|+.+.|...|..+++++|+..-+. ..++...
T Consensus 120 sn~aN~~kerg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 120 SNLANILKERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh
Confidence 9999999999999999999999999999 5688999999999999999999999999999999876543 3455678
Q ss_pred CCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC
Q psy6461 187 ERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG 266 (703)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (703)
|++++|..+|.+++.. .| ...-+|..||-++..+|
T Consensus 198 Grl~ea~~cYlkAi~~------------------------qp---------------------~fAiawsnLg~~f~~~G 232 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIET------------------------QP---------------------CFAIAWSNLGCVFNAQG 232 (966)
T ss_pred cccchhHHHHHHHHhh------------------------CC---------------------ceeeeehhcchHHhhcc
Confidence 9999999998877632 11 12357999999999999
Q ss_pred chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy6461 267 LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVL 346 (703)
Q Consensus 267 ~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (703)
+...|+..|+++++..|...+ +|..+-.- |.++
T Consensus 233 ei~~aiq~y~eAvkldP~f~d------AYiNLGnV-----------------------------~ke~------------ 265 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKLDPNFLD------AYINLGNV-----------------------------YKEA------------ 265 (966)
T ss_pred hHHHHHHHHHHhhcCCCcchH------HHhhHHHH-----------------------------HHHH------------
Confidence 999999999999988775321 22211110 1111
Q ss_pred hhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc
Q psy6461 347 LRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV 426 (703)
Q Consensus 347 l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 426 (703)
+.++.|+..|.+|+.. .| +...++-++|.+|..+|.++-|+..|++++...|+-+
T Consensus 266 -------------------~~~d~Avs~Y~rAl~l-rp-----n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~ 320 (966)
T KOG4626|consen 266 -------------------RIFDRAVSCYLRALNL-RP-----NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP 320 (966)
T ss_pred -------------------hcchHHHHHHHHHHhc-CC-----cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch
Confidence 6778899999999886 34 3566788888999999999999999999999999887
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhc
Q psy6461 427 EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIAL 506 (703)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~ 506 (703)
..++.++..+-..|+..+|...|.+|+..+|+. ++..+.++.++..+|.+
T Consensus 321 ----~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-----------------adam~NLgni~~E~~~~--------- 370 (966)
T KOG4626|consen 321 ----DAYNNLANALKDKGSVTEAVDCYNKALRLCPNH-----------------ADAMNNLGNIYREQGKI--------- 370 (966)
T ss_pred ----HHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-----------------HHHHHHHHHHHHHhccc---------
Confidence 899999999989999999999999999999985 77788888777776654
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 507 FKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 507 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
++|..+|.++++..|+. .....+++.++...|++++|+.-|+.++.+.|.-
T Consensus 371 --------------------------e~A~~ly~~al~v~p~~--aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f- 421 (966)
T KOG4626|consen 371 --------------------------EEATRLYLKALEVFPEF--AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF- 421 (966)
T ss_pred --------------------------hHHHHHHHHHHhhChhh--hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-
Confidence 99999999999999997 5689999999999999999999999999999975
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHH
Q psy6461 587 MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAW 666 (703)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 666 (703)
...+.....-+...|+.+.|.+.|.+|+..+|.-. +....++.++...|++.+|+..|+.|+++ +||.+....+..
T Consensus 422 -Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A--eAhsNLasi~kDsGni~~AI~sY~~aLkl-kPDfpdA~cNll 497 (966)
T KOG4626|consen 422 -ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA--EAHSNLASIYKDSGNIPEAIQSYRTALKL-KPDFPDAYCNLL 497 (966)
T ss_pred -HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH--HHHhhHHHHhhccCCcHHHHHHHHHHHcc-CCCCchhhhHHH
Confidence 34455566666678999999999999999999743 48889999999999999999999999999 566455555444
Q ss_pred HHH
Q psy6461 667 KSF 669 (703)
Q Consensus 667 ~~~ 669 (703)
.-.
T Consensus 498 h~l 500 (966)
T KOG4626|consen 498 HCL 500 (966)
T ss_pred HHH
Confidence 333
No 13
>KOG2002|consensus
Probab=99.97 E-value=1.6e-26 Score=242.30 Aligned_cols=567 Identities=13% Similarity=0.100 Sum_probs=342.5
Q ss_pred CchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcccCCCCchhHH
Q psy6461 16 EDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY-----KLWYNYLKLRRKQVKGKVITDPSYE 89 (703)
Q Consensus 16 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~-----~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (703)
.+..|..+++.+|.+.-..+.-+.+.. .+++..|...|.+++.++|... ..|....++ +..+
T Consensus 149 A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl------------~~~~ 216 (1018)
T KOG2002|consen 149 ADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKL------------GMSE 216 (1018)
T ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhc------------cchh
Confidence 334555555555555555555555555 5555555555555555555321 222222221 4445
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHH
Q psy6461 90 DVNNTFERSLVFMHKMPRIWLDYGRFLMDQH---KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFR 166 (703)
Q Consensus 90 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 166 (703)
.|+..|+|++..+|.+..+.+.++.+..... .+..+...+.++...+| .+|.+...++..+.-.|++..+..+..
T Consensus 217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~ 294 (1018)
T KOG2002|consen 217 KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAE 294 (1018)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence 5555555555555555555555555544432 23445555555555555 235555555554445555555555555
Q ss_pred HHHhhCCCCHH---HH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHH
Q psy6461 167 RYLKLFPEDAE---DY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAII 240 (703)
Q Consensus 167 ~~l~~~p~~~~---~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 240 (703)
.++...-.... .+ ...+...|++++|.+.|.+++..
T Consensus 295 ~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-------------------------------------- 336 (1018)
T KOG2002|consen 295 HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-------------------------------------- 336 (1018)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--------------------------------------
Confidence 55443211111 11 12234455555555555554421
Q ss_pred HhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHH-HHHHHHHHHHHHHHHHHHHHhhhCCCCCCc
Q psy6461 241 RGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFT-QVFDAYAQFEELSLNKRMEEIAENDTPSEE 319 (703)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 319 (703)
.++.+.-..+.+|.+|+..|+++.+...|+++++..|+..... .+-+.|+...+
T Consensus 337 ------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~------------------- 391 (1018)
T KOG2002|consen 337 ------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAK------------------- 391 (1018)
T ss_pred ------CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh-------------------
Confidence 1111223566778888888888888888888888777644321 12222222210
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc-CCchhHHHHHHHHHHhcCCCccCCchhHHHHHH
Q psy6461 320 DDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD-GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEF 398 (703)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (703)
.......+...+.+ .++..|.+..+|+.++.+++ +++-..+..|..|++.+-..... -.+.+..+.
T Consensus 392 ~~~~~d~a~~~l~K------------~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNv 458 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGK------------VLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ-IPPEVLNNV 458 (1018)
T ss_pred hhHHHHHHHHHHHH------------HHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhH
Confidence 00111222223333 36778999999999999876 78777799999988663222111 235678888
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCC--CCcch----HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPY--TKVED----LATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
|.++...|++++|...|.+++.... .+++. ...+-+.+++++-..++++.|-..|...++.+|.-
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y--------- 529 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY--------- 529 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh---------
Confidence 9999999999999999999987711 11111 11357788888888899999999999999999974
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
.+.+...+-+....++. ..+..++... ..++.+|..+....+.. .+...|..-|+..++....
T Consensus 530 --------Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k---~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 530 --------IDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKK---SEWKPAKKKFETILKKTST 596 (1018)
T ss_pred --------HHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhh---hhhcccccHHHHHHhhhcc
Confidence 22233332222222332 2233333333 33445555444333332 1234455555555554322
Q ss_pred cchHHHHHHHHHHHHH------------cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q psy6461 549 RYAKTLYLLYAKLEEE------------HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIE 616 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 616 (703)
...+-+.+.+|+++.. .+.+++|.++|.++++.+|.| ...-++.+-.....|++..|+.+|.+..+
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN--~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKN--MYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcch--hhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 2112345666665542 345688888999999999987 23334455556667899999999999888
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhc
Q psy6461 617 SLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQ 696 (703)
Q Consensus 617 ~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 696 (703)
...+.+. +|+..|+++.-+|++-.|+++|++|+++..+.+...+..-+++.....|.+.++.+.+.+++++. ..+|+
T Consensus 675 a~~~~~d--v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~ 751 (1018)
T KOG2002|consen 675 ATSDFED--VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTS 751 (1018)
T ss_pred HHhhCCc--eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-Cccch
Confidence 7654444 89999999999999999999999999888777788899999999999999999999988888876 34556
Q ss_pred ccc
Q psy6461 697 VLF 699 (703)
Q Consensus 697 ~~~ 699 (703)
|.|
T Consensus 752 v~F 754 (1018)
T KOG2002|consen 752 VKF 754 (1018)
T ss_pred HHh
Confidence 665
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=9.6e-26 Score=250.09 Aligned_cols=432 Identities=13% Similarity=0.096 Sum_probs=306.0
Q ss_pred HHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy6461 34 WLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDY 112 (703)
Q Consensus 34 w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 112 (703)
+...+..+. .|++++|...|+++++..|+ +..|...+..+... |++++|...++++++.+|++..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l--------~~~~~Ai~~~~~al~l~p~~~~a~~~~ 200 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNAL--------GDWEKVVEDTTAALELDPDYSKALNRR 200 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 445565555 78888888888888888885 66777777766554 788888888888888888888888888
Q ss_pred HHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHH--HHhcCCHH
Q psy6461 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY--LSSIERLD 190 (703)
Q Consensus 113 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~--~~~~~~~~ 190 (703)
+.++...|++++|...|..++...+.. ....-..+.+.. ...+.......++..|.+...+..+ +....+..
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFR-NEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc-cHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCC
Confidence 888888888888888887777655431 111111111111 1344455556666666654322111 10000000
Q ss_pred HHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH---HHhCc
Q psy6461 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY---IRSGL 267 (703)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~ 267 (703)
.+...+.... ...+ .....+..++..+ ...++
T Consensus 275 ~~~~~~~~~~------------------------~~~~---------------------~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 275 PRPAGLEDSN------------------------ELDE---------------------ETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred cchhhhhccc------------------------cccc---------------------ccccchHHHHHHHHHhhhhhh
Confidence 0000000000 0000 0012223333222 23467
Q ss_pred hHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy6461 268 FERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLL 347 (703)
Q Consensus 268 ~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (703)
+++|...|++++...+..
T Consensus 310 y~~A~~~~~~al~~~~~~-------------------------------------------------------------- 327 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLG-------------------------------------------------------------- 327 (615)
T ss_pred HHHHHHHHHHHHhcCCCC--------------------------------------------------------------
Confidence 888888888888653211
Q ss_pred hcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC
Q psy6461 348 RQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK 425 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 425 (703)
|....+|..++.+ ..|++++|+..|++++... | .....|+.+|.++...|++++|+..|++++..+|.+
T Consensus 328 ---~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 398 (615)
T TIGR00990 328 ---EKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P-----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398 (615)
T ss_pred ---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 1111222222221 2389999999999999863 3 357789999999999999999999999999999998
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhh
Q psy6461 426 VEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIA 505 (703)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~ 505 (703)
+ .+|..++.++...|++++|+..|++++...|++ ...|..++.++...|++
T Consensus 399 ~----~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-----------------~~~~~~la~~~~~~g~~-------- 449 (615)
T TIGR00990 399 P----DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-----------------IFSHIQLGVTQYKEGSI-------- 449 (615)
T ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-----------------HHHHHHHHHHHHHCCCH--------
Confidence 7 899999999999999999999999999999985 66777777777766654
Q ss_pred cCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 506 LFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 506 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
++|...|+++++..|++ +.++..+|.++...|++++|+..|++++...|.+
T Consensus 450 ---------------------------~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 450 ---------------------------ASSMATFRRCKKNFPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred ---------------------------HHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999998 6799999999999999999999999999998864
Q ss_pred hHH-----HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 586 EMF-----EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 586 ~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
... .++...+......+++++|..+++++++.+|++.. .+..++.++...|++++|+..|++++++...
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~--a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI--AVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 321 11111222223358999999999999999998765 7899999999999999999999999998543
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=8.1e-25 Score=246.25 Aligned_cols=566 Identities=12% Similarity=0.034 Sum_probs=356.1
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHH
Q psy6461 17 DLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTF 95 (703)
Q Consensus 17 ~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 95 (703)
...|+++++.+|.+..++..+++++. .|++++|+..++++++.+|.+..+...++.+ +++++|..+|
T Consensus 64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i------------~~~~kA~~~y 131 (987)
T PRK09782 64 IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI------------PVEVKSVTTV 131 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh------------ccChhHHHHH
Confidence 36899999999999999999999998 9999999999999999999998888776543 5688999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHH-----HhccChHHHHHHHHHHHHhCCcccccc-cHHHHHHHHHhcCChHHHHHHHHHHH
Q psy6461 96 ERSLVFMHKMPRIWLDYGRFL-----MDQHKITQTRHVFDRALRALPITQHHR-VWPLYLSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 96 ~~al~~~p~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l 169 (703)
+++++..|++..+...++..+ +...+.++|.+.++ ++..+...++. +.....+++...++++.|+.++++.+
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999988888772 22233455555555 33333111233 33333777777888888888888888
Q ss_pred hhCCCCHHHHH----------------------------------HHHHhcCCHHHHHHHHHHhhcccccccccCCchhh
Q psy6461 170 KLFPEDAEDYI----------------------------------EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQ 215 (703)
Q Consensus 170 ~~~p~~~~~~~----------------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 215 (703)
+..|.+...+. ..+...|+.++|.+.+.+.-.... ..+.....
T Consensus 210 k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~---~~~~~~~~ 286 (987)
T PRK09782 210 QQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT---TDAQEKSW 286 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc---CCCccHHH
Confidence 87777765322 222333444444444433211100 00000001
Q ss_pred hHH-----------------------------------------HHHHHHhcCccccc-------------cccHHHHHH
Q psy6461 216 LWN-----------------------------------------ELCEMISQNPDKIR-------------SLNVDAIIR 241 (703)
Q Consensus 216 ~w~-----------------------------------------~~~~~l~~~~~~~~-------------~~~~~~~~~ 241 (703)
+|. ....++...|.... .....+..+
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 366 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLAR 366 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHH
Confidence 111 01111111111000 000000011
Q ss_pred hHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH-HHHHHHHHHHHHHHHH----HHHHHhhhCCCC
Q psy6461 242 GGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF-TQVFDAYAQFEELSLN----KRMEEIAENDTP 316 (703)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~l~~~~~~~e~~~~~----~~~~~~~~~~~~ 316 (703)
......| ...+....++-..++.|+.++|..+|+++....+. ... ..+..+.+.+...-+. ..+..+......
T Consensus 367 ~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 367 LLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD-ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc-cccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 1111111 12344555666778889999999999998875221 111 1222222222211110 001111100000
Q ss_pred CCc--chHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCC--cHHHHHHHHhhhc-CCchhHHHHHHHHHHhcCCCccCCch
Q psy6461 317 SEE--DDIELELRLARLEDLMERRLLLLNSVLLRQNPH--NVLEWHKRVRLFD-GKPLDIIRTYTEAVKTVDPKLAVGKL 391 (703)
Q Consensus 317 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~--~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~ 391 (703)
... ....+......++.+. ..+..+|. +...|..++.++. +...+|+..|.+++...|. .
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~---------~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd------~ 509 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIV---------RLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPD------A 509 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHH---------HhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCc------h
Confidence 000 0000000011111111 13556677 8888888887654 7778899988888877432 1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
...+.++..+...|++++|+..|++++...|.+ ..++.++.++.+.|++++|...+++++...|..
T Consensus 510 -~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-------- 575 (987)
T PRK09782 510 -WQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-----EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-------- 575 (987)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc--------
Confidence 124555666678999999999999987775554 457788888889999999999999999888763
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
..++...+......| ++++|...|+++++.+|+
T Consensus 576 ---------~~l~~~La~~l~~~G-----------------------------------r~~eAl~~~~~AL~l~P~--- 608 (987)
T PRK09782 576 ---------NALYWWLHAQRYIPG-----------------------------------QPELALNDLTRSLNIAPS--- 608 (987)
T ss_pred ---------HHHHHHHHHHHHhCC-----------------------------------CHHHHHHHHHHHHHhCCC---
Confidence 333333222222224 458888888888888885
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (703)
...|..++.++.+.|++++|+..|++++...|++. ..+..+.......|++++|+.+|+++++..|+++. ++..++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~--~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~--a~~nLA 684 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS--NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA--LIRQLA 684 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHH
Confidence 35788888888888888888888888888888874 46666666677778888888888888888888765 788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 632 EMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
.++...|++++|+..|++|++.. |+ ...+-..+..+....++++.+.+-+
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~-P~-~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI-DN-QALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CC-CchhhhhhhHHHHHHHHHHHHHHHH
Confidence 88888888888888888888884 44 5667777777777777666665544
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1e-23 Score=237.40 Aligned_cols=574 Identities=11% Similarity=0.021 Sum_probs=380.4
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.|++++|...|+++++.+|++..++..++.++... |++++|+..++++++.+|.+...+..++.+ +++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~--------g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~ 124 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHF--------GHDDRARLLLEDQLKRHPGDARLERSLAAI----PVE 124 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccC
Confidence 69999999999999999999999999999988764 899999999999999999998888887666 899
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHH--------HHhcCChHHHHHHHH-HHHhhCCCCHH--HH-HHHHHhcCCHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSF--------VKSHAVPETAVRVFR-RYLKLFPEDAE--DY-IEYLSSIERLD 190 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------~~~~~~~~~A~~~~~-~~l~~~p~~~~--~~-~~~~~~~~~~~ 190 (703)
++|..+|++.+...|.+ ..+....+.. +... +.|.+.++ +.+..+|.+.. .. ..++...|+++
T Consensus 125 ~kA~~~ye~l~~~~P~n--~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 125 VKSVTTVEELLAQQKAC--DAVPTLRCRSEVGQNALRLAQL---PVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred hhHHHHHHHHHHhCCCC--hhHHHHHHHHhhccchhhhhhH---HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 99999999999999965 4555555554 4444 55555554 33333333332 23 56788999999
Q ss_pred HHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHH
Q psy6461 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFER 270 (703)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (703)
+|+..+.++++.. +.....+..+..+....-.. ..+.++.+. .......+|..+++.|.+.|+.++
T Consensus 200 ~Ai~lL~~L~k~~-------pl~~~~~~~L~~ay~q~l~~---~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 200 QADTLYNEARQQN-------TLSAAERRQWFDVLLAGQLD---DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhhCH---HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999998532 22333344444433221000 112222221 222456899999999999999999
Q ss_pred HHHHHHHHHhhcCCcc-cHHHHHH--HH--------HHHHHHHHHH----HHHH--hh----------hCCCCCCcchHH
Q psy6461 271 ARDIYEEAIQTVTTVR-DFTQVFD--AY--------AQFEELSLNK----RMEE--IA----------ENDTPSEEDDIE 323 (703)
Q Consensus 271 A~~~~~~~l~~~~~~~-~~~~l~~--~~--------~~~e~~~~~~----~~~~--~~----------~~~~~~~~~~~~ 323 (703)
|..++++.-...+... +-..+|. .. ..+.+...+. +... +. ......+-+..
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 344 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM- 344 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH-
Confidence 9998887433333211 1122222 11 1111111111 1000 00 00000000000
Q ss_pred HHHHHHHHHHHHh-hhhhhhhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHH
Q psy6461 324 LELRLARLEDLME-RRLLLLNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGK 400 (703)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 400 (703)
...+.......-. .+..-.-..+.+..|.+........- +..|+..+|...|+.+... ++.... ...+-..++.
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~l~~~l~~ 421 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDARL--SQTLMARLAS 421 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-Cccccc--CHHHHHHHHH
Confidence 0000000000000 00000001134555777777666554 3448999999999998875 222111 1223336677
Q ss_pred HHHHcCC-------------------------h---HHHHHHHHHhhccCCC--CcchHHHHHHHHHHHHHHcCCHHHHH
Q psy6461 401 FYEVNDQ-------------------------L---EDARLIFDKATLVPYT--KVEDLATVWCEWAELELRAGQEEAAL 450 (703)
Q Consensus 401 ~~~~~~~-------------------------~---~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~ 450 (703)
++.+.+. + ..+...+.+++...|. ++ .+|..++.++.. +++++|.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~----~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDA----AAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCH----HHHHHHHHHHHh-CCcHHHH
Confidence 7765543 2 2233444455555565 55 899999999877 8999999
Q ss_pred HHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHH
Q psy6461 451 RLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSR 526 (703)
Q Consensus 451 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~ 526 (703)
..+.+++...|++ . .....+..+...|++ ..|++++.. ++....|...+..+.
T Consensus 497 ~a~~~Al~~~Pd~-----------------~-~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all-- 553 (987)
T PRK09782 497 YAWLQAEQRQPDA-----------------W-QHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQ-- 553 (987)
T ss_pred HHHHHHHHhCCch-----------------H-HHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHH--
Confidence 9999999999973 2 244455556677776 334444333 222233444432222
Q ss_pred hCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchH
Q psy6461 527 YGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 527 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 606 (703)
..|+.++|...|+++++..|++ ...+..++......|++++|...|++++...|+ ...+......+.+.|++++
T Consensus 554 -~~Gd~~eA~~~l~qAL~l~P~~--~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~---~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 554 -AAGNGAARDRWLQQAEQRGLGD--NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS---ANAYVARATIYRQRHNVPA 627 (987)
T ss_pred -HCCCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCHHH
Confidence 3578999999999999999987 345555555555679999999999999999995 3567788888888999999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIK 686 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 686 (703)
|...|+++++..|+++. ++..++.++...|++++|+..|++|++.. |+ ++.++.+++......|++++|...++.+
T Consensus 628 A~~~l~~AL~l~Pd~~~--a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~-~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 628 AVSDLRAALELEPNNSN--YQAALGYALWDSGDIAQSREMLERAHKGL-PD-DPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999876 89999999999999999999999999995 44 5899999999999999999999988655
Q ss_pred HHH
Q psy6461 687 RSV 689 (703)
Q Consensus 687 ~~~ 689 (703)
-.+
T Consensus 704 l~l 706 (987)
T PRK09782 704 IDD 706 (987)
T ss_pred Hhc
Confidence 443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=7.1e-25 Score=243.17 Aligned_cols=261 Identities=13% Similarity=0.094 Sum_probs=221.2
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
+.+++|+..|++++.... ..+....+|..+|.++...|++++|+..|++++..+|.+. ..|+.++.++...|+
T Consensus 308 ~~y~~A~~~~~~al~~~~---~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~----~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK---LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT----QSYIKRASMNLELGD 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCC
Confidence 567889999999987521 1124567899999999999999999999999999999887 889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|...|++++..+|++ +.+|...+.++...|++
T Consensus 381 ~~eA~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~~---------------------------- 415 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSED-----------------PDIYYHRAQLHFIKGEF---------------------------- 415 (615)
T ss_pred HHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH----------------------------
Confidence 999999999999999985 78898888888777665
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 605 (703)
++|+..|+++++.+|++ ...|..+|.++...|++++|+..|+++++.+|.+ ..++..+...+...|+++
T Consensus 416 -------~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 416 -------AQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA--PDVYNYYGELLLDQNKFD 484 (615)
T ss_pred -------HHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHH
Confidence 99999999999999998 5689999999999999999999999999999987 456667777777889999
Q ss_pred HHHHHHHHHHHhCCCcchH----HHHHHHHH-HHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHH
Q psy6461 606 KTRQIYERAIESLPEEPTR----QMCLKFAE-METKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMR 680 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~----~~~~~~a~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 680 (703)
+|+..|+++++..|++... ..++..+. ++...|++++|...+++|+++. |+ +...+..++......|..++|.
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~-~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PE-CDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC-cHHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999875321 12222232 3334699999999999999984 55 5778999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy6461 681 EMLRIKRSVQA 691 (703)
Q Consensus 681 ~~~~~~~~~~~ 691 (703)
+.++.+-.+..
T Consensus 563 ~~~e~A~~l~~ 573 (615)
T TIGR00990 563 KLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHhc
Confidence 99887766654
No 18
>KOG2002|consensus
Probab=99.96 E-value=4e-24 Score=224.41 Aligned_cols=547 Identities=12% Similarity=0.062 Sum_probs=391.0
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh--cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK--NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTF 95 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~--~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 95 (703)
..|.++|..||.....-..-+-++. .++.+.|+..|+|+++.+|.++...+.++.+.+.. .....+..+..++
T Consensus 185 ~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~-----~d~~s~~~~~~ll 259 (1018)
T KOG2002|consen 185 KYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF-----NDSDSYKKGVQLL 259 (1018)
T ss_pred HHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc-----cchHHHHHHHHHH
Confidence 4567888889976644443333443 79999999999999999999999998888776543 1235688899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc-cccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q psy6461 96 ERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT-QHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174 (703)
Q Consensus 96 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 174 (703)
.++...+|.||.+...+++.+...|++..+..+..-++...-.. .....+...++.+..+|++++|-+.|..+++.+|+
T Consensus 260 ~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 260 QRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999854210 12334667788889999999999999999999999
Q ss_pred CHH-H---HHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccc
Q psy6461 175 DAE-D---YIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250 (703)
Q Consensus 175 ~~~-~---~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (703)
+.. . +.++++..|+++.|..+|++++. ..|+.
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k------------------------~~p~~-------------------- 375 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLK------------------------QLPNN-------------------- 375 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHH------------------------hCcch--------------------
Confidence 832 2 35788999999999999998863 22321
Q ss_pred hhhHHHHHHHHHHHhC----chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHH
Q psy6461 251 LGHLWNSLADYYIRSG----LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326 (703)
Q Consensus 251 ~~~~~~~l~~~~~~~~----~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (703)
.++...+|.+|...+ ..+.|..+..+++...|... ..|...+.+..... ...
T Consensus 376 -~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~---~a~l~laql~e~~d--------------------~~~ 431 (1018)
T KOG2002|consen 376 -YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS---EAWLELAQLLEQTD--------------------PWA 431 (1018)
T ss_pred -HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH---HHHHHHHHHHHhcC--------------------hHH
Confidence 245666677776654 45667777777777665432 23332222221110 000
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHH-H--HhhhcCCchhHHHHHHHHHHhcCCCccCC----chhHHHHHHH
Q psy6461 327 RLARLEDLMERRLLLLNSVLLRQNPHNVLEWHK-R--VRLFDGKPLDIIRTYTEAVKTVDPKLAVG----KLHTLWIEFG 399 (703)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~--~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----~~~~~~~~~a 399 (703)
.+..|..+++. +.....+ -+..|+. . ..+..|++..|...|..|...+.+...+. .....-+++|
T Consensus 432 sL~~~~~A~d~-------L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 432 SLDAYGNALDI-------LESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHHHHHHHHHH-------HHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 11122222110 0011122 2222322 2 22344999999999999988743322211 1234578889
Q ss_pred HHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHh
Q psy6461 400 KFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYK 479 (703)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 479 (703)
.+++..++++.|..+|...++.+|..+ ..++.++-+....++..+|...+..++..+..+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YI----d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n---------------- 563 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYI----DAYLRLGCMARDKNNLYEASLLLKDALNIDSSN---------------- 563 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhH----HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC----------------
Confidence 999999999999999999999999887 888888877777889999999999999998774
Q ss_pred hHHHHHHHHHHHHhcCCh----hHHHhHhhcCC---CCc-hHHHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHhC
Q psy6461 480 SIKLWSLYADLEESFGTF----KAYEKGIALFK---WPY-IFDIWNTYLTKFLSRY-----GGTKLERARDLFEQCLEAC 546 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~----~~~e~al~~~~---~~~-~~~~~~~y~~~~~~~~-----~~~~~~~A~~~~~~al~~~ 546 (703)
+.+|..++.++.....+ .-|+..++... ++. ...+...|+..+.... ..+..++|.++|.++|+.+
T Consensus 564 -p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 564 -PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred -cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999888766554 33455554321 111 2222333333222111 1345789999999999999
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHH
Q psy6461 547 PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQM 626 (703)
Q Consensus 547 p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 626 (703)
|.|. -+=...|-++...|++.+|+.+|.+..+...+. ..+|...+..+..+|++..|.++|+.+++.+-.+..+.+
T Consensus 643 pkN~--yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~--~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 643 PKNM--YAANGIGIVLAEKGRFSEARDIFSQVREATSDF--EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cchh--hhccchhhhhhhccCchHHHHHHHHHHHHHhhC--CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 9982 344678888999999999999999888765533 236777778888889999999999999998764445668
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 627 CLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
...+++.....|.+.+|..++.+|+...|.+ ..+--+++-...+
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~~--~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLAPSN--TSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc--chHHhHHHHHHHH
Confidence 8889999999999999999999999986655 4444444444433
No 19
>KOG1914|consensus
Probab=99.95 E-value=5.6e-24 Score=209.33 Aligned_cols=457 Identities=16% Similarity=0.283 Sum_probs=300.8
Q ss_pred HHHHhcCCCChHHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHH
Q psy6461 21 EEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV 100 (703)
Q Consensus 21 e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 100 (703)
++.|+.||.|.++|..+++......+++++..||+.+..||.++..|..|++.++.. ++++.+..+|.|||.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s--------kdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELAS--------KDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--------hhHHHHHHHHHHHHH
Confidence 777888888888888888888844888888888888888888888888888776542 667777777777776
Q ss_pred hcCCCHHHHHHHHHHHHhc-cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 101 FMHKMPRIWLDYGRFLMDQ-HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 101 ~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
..- +..+|..|+..-.+. |+...++...-+| |+-++...
T Consensus 82 kvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qA--------------------------------y~f~l~ki------- 121 (656)
T KOG1914|consen 82 KVL-NLDLWKLYLSYVRETKGKLFGYREKMVQA--------------------------------YDFALEKI------- 121 (656)
T ss_pred HHh-hHhHHHHHHHHHHHHccCcchHHHHHHHH--------------------------------HHHHHHHh-------
Confidence 544 356666666543331 1122111111111 11111100
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHH
Q psy6461 180 IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLA 259 (703)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (703)
.-...+..+|..|+.+++ .|...|
T Consensus 122 ----------------------------g~di~s~siW~eYi~FL~----------------------------~vea~g 145 (656)
T KOG1914|consen 122 ----------------------------GMDIKSYSIWDEYINFLE----------------------------GVEAVG 145 (656)
T ss_pred ----------------------------ccCcccchhHHHHHHHHH----------------------------cccccc
Confidence 001223345555555542 233334
Q ss_pred HHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhh
Q psy6461 260 DYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRL 339 (703)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (703)
.+..++ +.+..+.+|++++...-. +...+|..|..||+.++....+++-.. -..+...+...+.+
T Consensus 146 k~ee~Q-RI~~vRriYqral~tPm~--nlEkLW~DY~~fE~~IN~~tarK~i~e------~s~~Ym~AR~~~qe------ 210 (656)
T KOG1914|consen 146 KYEENQ-RITAVRRIYQRALVTPMH--NLEKLWKDYEAFEQEINIITARKFIGE------RSPEYMNARRVYQE------ 210 (656)
T ss_pred cHHHHH-HHHHHHHHHHHHhcCccc--cHHHHHHHHHHHHHHHHHHHHHHHHHh------hCHHHHHHHHHHHH------
Confidence 444444 788889999999976432 567899999999988754332221100 00001111111111
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHh----cCCCccC--CchhHHHHHHHHHHHHcCCh-----
Q psy6461 340 LLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKT----VDPKLAV--GKLHTLWIEFGKFYEVNDQL----- 408 (703)
Q Consensus 340 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~----~~~~~~~--~~~~~~~~~~a~~~~~~~~~----- 408 (703)
.....+.+.. +||.... -...++|.+++++...++-.
T Consensus 211 --------------------------------l~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~ 258 (656)
T KOG1914|consen 211 --------------------------------LQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGT 258 (656)
T ss_pred --------------------------------HHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 0111111211 1111110 01256798899888755421
Q ss_pred ---HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 409 ---EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ--------------EEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 409 ---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
.+..-+|++++...+.++ ++|+.++.++...++ .+++.+++++++...-..
T Consensus 259 ~~~~Rv~yayeQ~ll~l~~~p----eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-------- 326 (656)
T KOG1914|consen 259 MLTRRVMYAYEQCLLYLGYHP----EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-------- 326 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH--------
Confidence 345556788888777777 999999998877776 677888888887654331
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
+..+++.+++.++..-+ .++.+..-..+++.+.+...+.
T Consensus 327 --------~~~Ly~~~a~~eE~~~~--------------------------------~n~~~~~~~~~~~ll~~~~~~~- 365 (656)
T KOG1914|consen 327 --------NKLLYFALADYEESRYD--------------------------------DNKEKKVHEIYNKLLKIEDIDL- 365 (656)
T ss_pred --------HHHHHHHHHhhHHHhcc--------------------------------cchhhhhHHHHHHHHhhhccCC-
Confidence 35666666666554322 1234667778888877655553
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (703)
..+|+.+.++-.+.-..+.||.+|.+|-+..-..-.+-+..+++.+.+ .++..-|-.+|+-.|+++|++|. ..+.|+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~--yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPE--YVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChH--HHHHHH
Confidence 368999999988999999999999999875433222445666666665 47899999999999999999887 889999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcc-cCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 632 EMETKLGEIDRARAIYAHCSQI-CDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
+++...|+-.+||.+|++++.. .+++....+|..|.+||...|+++.+.++-+
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lek 496 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEK 496 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999999999999999986 4566678999999999999999999998873
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=6.4e-24 Score=239.62 Aligned_cols=434 Identities=10% Similarity=-0.018 Sum_probs=281.1
Q ss_pred HhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhc
Q psy6461 24 ILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFM 102 (703)
Q Consensus 24 l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 102 (703)
-+.+|.+...-.-+..... .|+.++|..+++++....|.+...|..++...... |++++|..+|+++++..
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~--------g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL--------KQWQNSLTLWQKALSLE 79 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhC
Confidence 3456777777777777777 89999999999999998999999999988877654 88999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6461 103 HKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182 (703)
Q Consensus 103 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 182 (703)
|.++.++..++.++...|++++|...++++++..|. +.. |..++.++...|+++.|+..|+++++.+|++..
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~--~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~----- 151 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD--KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ----- 151 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----
Confidence 999999999999999999999999999999999995 456 888899998999999999999999999998864
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (703)
++..++..+
T Consensus 152 -----------------------------------------------------------------------~~~~la~~l 160 (765)
T PRK10049 152 -----------------------------------------------------------------------YPTEYVQAL 160 (765)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 333344444
Q ss_pred HHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6461 263 IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL 342 (703)
Q Consensus 263 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (703)
...+..+.|...++++.. .|................
T Consensus 161 ~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r------------------------------------------- 196 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVR------------------------------------------- 196 (765)
T ss_pred HHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 455555556555555443 221000000000000000
Q ss_pred hhhhhhcCCCcHHHHHHHHhhhcCCc---hhHHHHHHHHHHhcCCCcc-CCchhHHHHHHHHHHHHcCChHHHHHHHHHh
Q psy6461 343 NSVLLRQNPHNVLEWHKRVRLFDGKP---LDIIRTYTEAVKTVDPKLA-VGKLHTLWIEFGKFYEVNDQLEDARLIFDKA 418 (703)
Q Consensus 343 ~~~~l~~~p~~~~~~~~~~~~~~~~~---~~a~~~~~~a~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 418 (703)
+...+.. ...+.+ +.|+..|+.++...+.... .+....+++.....+...|++++|+..|+++
T Consensus 197 ----~~~~~~~---------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 197 ----LSFMPTR---------SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred ----hhccccc---------ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 0000000 000111 4466666666654221110 0112223333222334567788888888887
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChh
Q psy6461 419 TLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFK 498 (703)
Q Consensus 419 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (703)
++..+..| .....| ++.+++..|++++|+..|++++...|.+... .......++.++...
T Consensus 264 l~~~~~~P-~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~-------------~~~~~~~L~~a~~~~---- 323 (765)
T PRK10049 264 KAEGQIIP-PWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADL-------------SDEELADLFYSLLES---- 323 (765)
T ss_pred hccCCCCC-HHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC-------------ChHHHHHHHHHHHhc----
Confidence 77654333 111233 4667777888888888888877766642000 011222222222222
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc-------------chHHHHHHHHHHHHHc
Q psy6461 499 AYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR-------------YAKTLYLLYAKLEEEH 565 (703)
Q Consensus 499 ~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~~~~a~~~~~~ 565 (703)
+++++|...++++....|.. .-..++..++.++...
T Consensus 324 -------------------------------g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 324 -------------------------------ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred -------------------------------ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 33477777777777766531 0123556677777777
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARA 645 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 645 (703)
|++++|++++++++...|++ ..++...+......|++++|+..++++++..|+++. +++..+......|++++|..
T Consensus 373 g~~~eA~~~l~~al~~~P~n--~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~--l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGN--QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN--LEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH--HHHHHHHHHHHhCCHHHHHH
Confidence 77777777777777777776 446666666666677777777777777777777665 66777777777777777777
Q ss_pred HHHHHhcccCC
Q psy6461 646 IYAHCSQICDP 656 (703)
Q Consensus 646 ~~~~a~~~~~~ 656 (703)
.++++++..|.
T Consensus 449 ~~~~ll~~~Pd 459 (765)
T PRK10049 449 LTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHhCCC
Confidence 77777776433
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=2.4e-23 Score=229.95 Aligned_cols=349 Identities=14% Similarity=0.099 Sum_probs=260.4
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
+|+++.|..+++..+...|.+.+.+..++..... .|++++|...|++++..+|+++.+|..++.++...|++
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~--------~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA--------SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh--------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 7888888888888888888888888777755433 37788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNK 202 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 202 (703)
++|...|+++++..| .+..+|...+..+...|++++|+..+++++...|++...
T Consensus 127 ~~Ai~~l~~Al~l~P--~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a------------------------ 180 (656)
T PRK15174 127 ATVADLAEQAWLAFS--GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM------------------------ 180 (656)
T ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH------------------------
Confidence 888888888888888 446777777777778888888888888777777766422
Q ss_pred cccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc
Q psy6461 203 ESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282 (703)
Q Consensus 203 ~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 282 (703)
+..++ .+...|++++|...+++++...
T Consensus 181 ----------------------------------------------------~~~~~-~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 181 ----------------------------------------------------IATCL-SFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred ----------------------------------------------------HHHHH-HHHHcCCHHHHHHHHHHHHhcC
Confidence 22222 2456677777777777776654
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh
Q psy6461 283 TTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR 362 (703)
Q Consensus 283 ~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 362 (703)
|..... ...... .+.
T Consensus 208 ~~~~~~--~~~~l~---------------------------------------------------------------~~l 222 (656)
T PRK15174 208 ALERQE--SAGLAV---------------------------------------------------------------DTL 222 (656)
T ss_pred CCcchh--HHHHHH---------------------------------------------------------------HHH
Confidence 321100 000000 000
Q ss_pred hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHH----HHHHHHHhhccCCCCcchHHHHHHHHHH
Q psy6461 363 LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLED----ARLIFDKATLVPYTKVEDLATVWCEWAE 438 (703)
Q Consensus 363 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~ 438 (703)
...|+.++|+..|++++.. .| ..+.++..+|..+...|++++ |+..|++++...|+++ .++..++.
T Consensus 223 ~~~g~~~eA~~~~~~al~~-~p-----~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~----~a~~~lg~ 292 (656)
T PRK15174 223 CAVGKYQEAIQTGESALAR-GL-----DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV----RIVTLYAD 292 (656)
T ss_pred HHCCCHHHHHHHHHHHHhc-CC-----CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH----HHHHHHHH
Confidence 0127777788888887765 23 346788889999999998885 8999999999999887 88999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHH
Q psy6461 439 LELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNT 518 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~ 518 (703)
++.+.|++++|...+++++...|++ ..++..++.++...|++
T Consensus 293 ~l~~~g~~~eA~~~l~~al~l~P~~-----------------~~a~~~La~~l~~~G~~--------------------- 334 (656)
T PRK15174 293 ALIRTGQNEKAIPLLQQSLATHPDL-----------------PYVRAMYARALRQVGQY--------------------- 334 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHCCCH---------------------
Confidence 9999999999999999999999985 67788888777776665
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHH
Q psy6461 519 YLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKA 598 (703)
Q Consensus 519 y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 598 (703)
++|+..|++++...|++ ...+...+.++...|++++|++.|+++++..|++.
T Consensus 335 --------------~eA~~~l~~al~~~P~~--~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------ 386 (656)
T PRK15174 335 --------------TAASDEFVQLAREKGVT--SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------ 386 (656)
T ss_pred --------------HHHHHHHHHHHHhCccc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------
Confidence 89999999999999987 44566678888899999999999999999998863
Q ss_pred HHhcCchHHHHHHHHHHHhCCCc
Q psy6461 599 AEIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~ 621 (703)
...+++|+..+.+++...+..
T Consensus 387 --~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 387 --PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred --hhhHHHHHHHHHHHHHhcCCc
Confidence 124556777777777776543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=6.9e-23 Score=231.24 Aligned_cols=420 Identities=13% Similarity=0.074 Sum_probs=305.4
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..+++.+..+|.+..++..++..+. .+++++|...|+++++.+|.++..|..++...... |++++|...++
T Consensus 36 ~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~--------g~~~eA~~~l~ 107 (765)
T PRK10049 36 TVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA--------GQYDEALVKAK 107 (765)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence 4677777778999999999999998 99999999999999999999999999988877654 89999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
++++..|+++. |..++.++...|+.++|...|+++++..| .+..++..++.++...+..+.|+..++++.. .|+..
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P--~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~ 183 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP--QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEK 183 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHH
Confidence 99999999999 99999999999999999999999999999 4578888888888888888999999988776 66521
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHH
Q psy6461 177 EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWN 256 (703)
Q Consensus 177 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (703)
... .. ..+.. .+..
T Consensus 184 ~~l-~~-------~~~~~----------------------------------------------------------~~r~ 197 (765)
T PRK10049 184 RDL-EA-------DAAAE----------------------------------------------------------LVRL 197 (765)
T ss_pred HHH-HH-------HHHHH----------------------------------------------------------HHHh
Confidence 000 00 00000 0000
Q ss_pred HHHHHHHHhCch---HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHH
Q psy6461 257 SLADYYIRSGLF---ERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLED 333 (703)
Q Consensus 257 ~l~~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (703)
.++......+++ ++|+..|+.+++..|...+....+.
T Consensus 198 ~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~---------------------------------------- 237 (765)
T PRK10049 198 SFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ---------------------------------------- 237 (765)
T ss_pred hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH----------------------------------------
Confidence 011111122233 6788888888865433221100000
Q ss_pred HHhhhhhhhhhhhhhcCCCcHHHHHH-HHh-hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 334 LMERRLLLLNSVLLRQNPHNVLEWHK-RVR-LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 334 ~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~-~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
.+++. .+. +..++.++|+..|++++..-++ .|.....| ++.++...|++++|
T Consensus 238 ---------------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~---~P~~a~~~--la~~yl~~g~~e~A 291 (765)
T PRK10049 238 ---------------------RARIDRLGALLARDRYKDVISEYQRLKAEGQI---IPPWAQRW--VASAYLKLHQPEKA 291 (765)
T ss_pred ---------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC---CCHHHHHH--HHHHHHhcCCcHHH
Confidence 00000 000 1127788999999998775221 12233344 58899999999999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHh--hHHHHHHHHH
Q psy6461 412 RLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYK--SIKLWSLYAD 489 (703)
Q Consensus 412 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 489 (703)
+..|++++..+|.++.........++..+...|++++|+.+++++....|.......... +.+. ...++..++.
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~----~~p~~~~~~a~~~~a~ 367 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT----SIPNDDWLQGQSLLSQ 367 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC----CCCCchHHHHHHHHHH
Confidence 999999998877652111245666666778999999999999999998875321000000 0000 0123333344
Q ss_pred HHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChH
Q psy6461 490 LEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLAR 569 (703)
Q Consensus 490 ~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 569 (703)
++... |++++|++++++++...|++ +.+++.+|.++...|+++
T Consensus 368 ~l~~~-----------------------------------g~~~eA~~~l~~al~~~P~n--~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 368 VAKYS-----------------------------------NDLPQAEMRARELAYNAPGN--QGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHc-----------------------------------CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHH
Confidence 44433 45699999999999999999 679999999999999999
Q ss_pred HHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH
Q psy6461 570 HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 570 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 624 (703)
+|++.+++++...|++.. ++...+....+.+++++|..+++++++..|+++.+
T Consensus 411 ~A~~~l~~al~l~Pd~~~--l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 411 AAENELKKAEVLEPRNIN--LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHhhCCCChH--HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999855 44444556667889999999999999999999863
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=6.1e-23 Score=226.69 Aligned_cols=341 Identities=13% Similarity=0.033 Sum_probs=271.3
Q ss_pred CCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q psy6461 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 93 (703)
+....++..+..+|.+.+++..++.... .|+++.|...|+++++.+|+++..|...+..+... |++++|..
T Consensus 60 ~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~--------g~~~~Ai~ 131 (656)
T PRK15174 60 VGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS--------KQYATVAD 131 (656)
T ss_pred hhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--------CCHHHHHH
Confidence 3446789999999999999999998888 99999999999999999999999999998887654 89999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 173 (703)
.|+++++..|+++.+|..++.++...|++++|...+++++...|. ....+..... +...|++++|+..+++++..+|
T Consensus 132 ~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~--~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 132 LAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP--RGDMIATCLS-FLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC--CHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999995 3555544433 5578899999999998887765
Q ss_pred CCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhh
Q psy6461 174 EDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253 (703)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (703)
.... .
T Consensus 209 ~~~~---------------------------------------------------------------------------~ 213 (656)
T PRK15174 209 LERQ---------------------------------------------------------------------------E 213 (656)
T ss_pred Ccch---------------------------------------------------------------------------h
Confidence 3311 1
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHH
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLED 333 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (703)
.+..++..+...|++++|...|++++...|+... .
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~---~------------------------------------------ 248 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA---L------------------------------------------ 248 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---H------------------------------------------
Confidence 2233345566677777777777777765554221 1
Q ss_pred HHhhhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchh----HHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCC
Q psy6461 334 LMERRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLD----IIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407 (703)
Q Consensus 334 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~----a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 407 (703)
+..++.+ ..|+.++ |+..|++++... | ....++..+|.++...|+
T Consensus 249 -----------------------~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P-----~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 249 -----------------------RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S-----DNVRIVTLYADALIRTGQ 299 (656)
T ss_pred -----------------------HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C-----CCHHHHHHHHHHHHHCCC
Confidence 1111110 1155443 677888888763 3 468999999999999999
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHH
Q psy6461 408 LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLY 487 (703)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
+++|+..|++++...|.++ .++..++.++.+.|++++|+..|++++...|++ ...+...
T Consensus 300 ~~eA~~~l~~al~l~P~~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-----------------~~~~~~~ 358 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLP----YVRAMYARALRQVGQYTAASDEFVQLAREKGVT-----------------SKWNRYA 358 (656)
T ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------hHHHHHH
Confidence 9999999999999999987 889999999999999999999999999999974 3444444
Q ss_pred HHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q psy6461 488 ADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGL 567 (703)
Q Consensus 488 ~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 567 (703)
+.++...|+ .++|+..|+++++..|++. ...
T Consensus 359 a~al~~~G~-----------------------------------~deA~~~l~~al~~~P~~~--------------~~~ 389 (656)
T PRK15174 359 AAALLQAGK-----------------------------------TSEAESVFEHYIQARASHL--------------PQS 389 (656)
T ss_pred HHHHHHCCC-----------------------------------HHHHHHHHHHHHHhChhhc--------------hhh
Confidence 555555554 4999999999999999973 245
Q ss_pred hHHHHHHHHHHhhccCcc
Q psy6461 568 ARHAMAVYERATGAVLPE 585 (703)
Q Consensus 568 ~~~A~~~~~~al~~~p~~ 585 (703)
+++|+..|.+++...+..
T Consensus 390 ~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 390 FEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 568999999998877654
No 24
>PLN03077 Protein ECB2; Provisional
Probab=99.94 E-value=1.8e-21 Score=224.75 Aligned_cols=476 Identities=11% Similarity=0.051 Sum_probs=256.0
Q ss_pred ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHH
Q psy6461 141 HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNEL 220 (703)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 220 (703)
+..++..++..+.+.|+.+.|..+|++....++.+...++..+...|++++|..+|.++.... . .+ ....+..+
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~----~P-d~~ty~~l 294 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-V----DP-DLMTITSV 294 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-C----CC-ChhHHHHH
Confidence 345667777788888888888888888766665555667777888888888888888875321 0 00 01111111
Q ss_pred HHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH
Q psy6461 221 CEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300 (703)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~ 300 (703)
+.......+ ...+..+........-.....+++.++..|.+.|++++|..+|++... |+...+..+..+|.....
T Consensus 295 l~a~~~~g~---~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 295 ISACELLGD---ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHhcCC---hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCC
Confidence 111111111 112333444443333334467899999999999999999999998643 444455555444432110
Q ss_pred HHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhh-hcCCchhHHHHHHHHH
Q psy6461 301 LSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRL-FDGKPLDIIRTYTEAV 379 (703)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~-~~~~~~~a~~~~~~a~ 379 (703)
...++..|+.+.. ....|+....-.....+ ..|+.+.+.++++.++
T Consensus 370 -----------------------~~~A~~lf~~M~~----------~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 370 -----------------------PDKALETYALMEQ----------DNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred -----------------------HHHHHHHHHHHHH----------hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1112223333211 12224432221111112 2388899999999888
Q ss_pred HhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy6461 380 KTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 459 (703)
+.- . .....++..+...|.+.|++++|+.+|++..+. +. ..|..++..+.+.|+.++|..+|++....
T Consensus 417 ~~g-~----~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---d~----vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 417 RKG-L----ISYVVVANALIEMYSKCKCIDKALEVFHNIPEK---DV----ISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred HhC-C----CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---Ce----eeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 751 1 123567888889999999999999999987543 33 56999999999999999999999998754
Q ss_pred -CCCCcccccchh------hH-----------HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCC-CCchHHHHHHHH
Q psy6461 460 -PARPVAYHDEAE------TV-----------QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFK-WPYIFDIWNTYL 520 (703)
Q Consensus 460 -~p~~~~~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~-~~~~~~~~~~y~ 520 (703)
.|+.+.+..-.. .+ ...+..+..+...+++++.+.|++ ++|...|. ..++...|...+
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~---~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM---NYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH---HHHHHHHHhcCCChhhHHHHH
Confidence 444221110000 00 000001122233344444444444 22222221 023444455544
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHH
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLEA--CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKA 598 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 598 (703)
..+.. .|+.++|.++|+++.+. .|+. ..+..+...+.+.|..++|..+|+.+.+..+-.+....|...++.+
T Consensus 562 ~~~~~---~G~~~~A~~lf~~M~~~g~~Pd~---~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 562 TGYVA---HGKGSMAVELFNRMVESGVNPDE---VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHH---cCCHHHHHHHHHHHHHcCCCCCc---ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 43322 24455555555555542 3432 2344444445555555555555555553322222234555555555
Q ss_pred HHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHH
Q psy6461 599 AEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDT 678 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 678 (703)
.+.|++++|.++++++ ...|+ ..+|..+...+...|+.+.+....++.+++ +|+ +...+..+..++...|..++
T Consensus 636 ~r~G~~~eA~~~~~~m-~~~pd---~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l-~p~-~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 636 GRAGKLTEAYNFINKM-PITPD---PAVWGALLNACRIHRHVELGELAAQHIFEL-DPN-SVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HhCCCHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCC-CcchHHHHHHHHHHCCChHH
Confidence 5555555555555543 12232 224555555555555555555555555555 232 34455555555555555555
Q ss_pred HHHHHHHHH
Q psy6461 679 MREMLRIKR 687 (703)
Q Consensus 679 ~~~~~~~~~ 687 (703)
+.++.+..+
T Consensus 710 a~~vr~~M~ 718 (857)
T PLN03077 710 VARVRKTMR 718 (857)
T ss_pred HHHHHHHHH
Confidence 555554333
No 25
>PLN03077 Protein ECB2; Provisional
Probab=99.93 E-value=2.4e-21 Score=223.73 Aligned_cols=490 Identities=10% Similarity=-0.004 Sum_probs=301.9
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh--cCCCH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF--MHKMP 106 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 106 (703)
+...+..++..+. .|+++.|+.+|+++.+. +...|..++..+.+ .|++++|..+|+++... .| +.
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~--------~g~~~eAl~lf~~M~~~g~~P-d~ 288 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFE--------NGECLEGLELFFTMRELSVDP-DL 288 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCCC---CcchhHHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCC-Ch
Confidence 4455666666665 67777777777776532 34456565554433 36777777777777665 34 44
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhc
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSI 186 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 186 (703)
..+..++..+...|+.+.+++++..+.+..-. .+..+|..++..+.+.|+++.|.++|++....++.....++..+.+.
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 56666666667777777777777777664321 34566777777777777777777777776554444545566666777
Q ss_pred CCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC
Q psy6461 187 ERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG 266 (703)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (703)
|++++|..+|.++....-. +.. ..+..+......... ...+..+..............++..+++.|.+.|
T Consensus 368 g~~~~A~~lf~~M~~~g~~--Pd~----~t~~~ll~a~~~~g~---~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 368 GLPDKALETYALMEQDNVS--PDE----ITIASVLSACACLGD---LDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred CCHHHHHHHHHHHHHhCCC--CCc----eeHHHHHHHHhccch---HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 7777777777766421100 000 000000110000000 0012222333332222233445666666666666
Q ss_pred chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy6461 267 LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVL 346 (703)
Q Consensus 267 ~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (703)
++++|..+|++... ++.
T Consensus 439 ~~~~A~~vf~~m~~--~d~------------------------------------------------------------- 455 (857)
T PLN03077 439 CIDKALEVFHNIPE--KDV------------------------------------------------------------- 455 (857)
T ss_pred CHHHHHHHHHhCCC--CCe-------------------------------------------------------------
Confidence 66666666665432 222
Q ss_pred hhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC-
Q psy6461 347 LRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY- 423 (703)
Q Consensus 347 l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~- 423 (703)
..|..++..+ .|+.++|+..|++++....|+ ...+..+...+...|+++.+..++..+++...
T Consensus 456 --------vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd------~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 456 --------ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN------SVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred --------eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC------HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 2222222211 256666777777766543332 22344445555566777777777776666532
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hH
Q psy6461 424 TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KA 499 (703)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 499 (703)
.+. .++..++.+|.+.|++++|..+|++. .|+ ...|+.++..+...|+. ++
T Consensus 522 ~~~----~~~naLi~~y~k~G~~~~A~~~f~~~---~~d------------------~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 522 FDG----FLPNALLDLYVRCGRMNYAWNQFNSH---EKD------------------VVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred ccc----eechHHHHHHHHcCCHHHHHHHHHhc---CCC------------------hhhHHHHHHHHHHcCCHHHHHHH
Confidence 222 45666667777777777777777664 332 56677777777666665 44
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q psy6461 500 YEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERAT 579 (703)
Q Consensus 500 ~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 579 (703)
|+++.+.-.. ++...+...+.. +. ..|.+++|..+|+.+.+..+-.+....|..+..++.+.|++++|..++++.
T Consensus 577 f~~M~~~g~~-Pd~~T~~~ll~a-~~--~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 577 FNRMVESGVN-PDEVTFISLLCA-CS--RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHcCCC-CCcccHHHHHHH-Hh--hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 4444432211 222223332221 11 246789999999999965433322568999999999999999999999975
Q ss_pred hccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 580 GAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 580 ~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
...|+ ..+|...+..+...++.+.++...+++++..|++.. .+..+++++.+.|++++|.++.+...+.
T Consensus 652 ~~~pd---~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~--~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 652 PITPD---PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG--YYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc--hHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 34454 568999999888889999999999999999999877 7889999999999999999999888665
No 26
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.93 E-value=1.8e-21 Score=219.21 Aligned_cols=454 Identities=13% Similarity=0.075 Sum_probs=279.7
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh--cCCCH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELP--GSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF--MHKMP 106 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 106 (703)
..|...+..+. .|++++|..+|+.+....| -+...+..++.... ..++++.+..++..+++. .| ++
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~--------~~~~~~~a~~l~~~m~~~g~~~-~~ 158 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI--------ALKSIRCVKAVYWHVESSGFEP-DQ 158 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHhCCCc-ch
Confidence 47888888777 8999999999999987543 34555555554432 237788999999998876 35 68
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCHH--HHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF--PEDAE--DYIEY 182 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~--~~~~~ 182 (703)
.++..++.++.+.|+++.|+++|++..+ | +...|..++..+.+.|++++|..+|++.++.. |+... .++..
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE--R---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC--C---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 9999999999999999999999998643 3 45789999999999999999999999998754 33222 34555
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (703)
+...|..+.+.+++..+.... + . ....++..+++.|
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g-~---------------------~----------------------~d~~~~n~Li~~y 269 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTG-V---------------------V----------------------GDTFVSCALIDMY 269 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhC-C---------------------C----------------------ccceeHHHHHHHH
Confidence 677888888888776654210 0 0 1124688889999
Q ss_pred HHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6461 263 IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL 342 (703)
Q Consensus 263 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (703)
.+.|++++|..+|++... ++...+..+..+|.
T Consensus 270 ~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~---------------------------------------------- 301 (697)
T PLN03081 270 SKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYA---------------------------------------------- 301 (697)
T ss_pred HHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHH----------------------------------------------
Confidence 999999999999987532 22111111111111
Q ss_pred hhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHh-cCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q psy6461 343 NSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKT-VDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV 421 (703)
Q Consensus 343 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 421 (703)
..|+.++|.++|++.... +.| ....+..+...+.+.|++++|.++++.+++.
T Consensus 302 ---------------------~~g~~~eA~~lf~~M~~~g~~p------d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 302 ---------------------LHGYSEEALCLYYEMRDSGVSI------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred ---------------------hCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 016677777777776543 222 2335666666677777777777777777666
Q ss_pred C-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh---
Q psy6461 422 P-YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF--- 497 (703)
Q Consensus 422 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 497 (703)
. +.+. .++..++.+|.+.|++++|.++|++..+ |+ ...|+.++..+...|+.
T Consensus 355 g~~~d~----~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d------------------~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 355 GFPLDI----VANTALVDLYSKWGRMEDARNVFDRMPR--KN------------------LISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred CCCCCe----eehHHHHHHHHHCCCHHHHHHHHHhCCC--CC------------------eeeHHHHHHHHHHcCCHHHH
Confidence 3 3333 5677777777777777777777776543 22 45677777776666665
Q ss_pred -hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q psy6461 498 -KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYE 576 (703)
Q Consensus 498 -~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 576 (703)
++|+++.+... .++...+...+.... ..|.+++|.++|+.+.+..+-.+....|..++..+.+.|++++|.++++
T Consensus 411 ~~lf~~M~~~g~-~Pd~~T~~~ll~a~~---~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 411 VEMFERMIAEGV-APNHVTFLAVLSACR---YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 22222221111 111122222221111 1234456666666555432211112345555555556666666665555
Q ss_pred HHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 577 RATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQ 652 (703)
Q Consensus 577 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~ 652 (703)
++ ...|+ ..+|...+..+...|+++.|+.+++++++..|++.. .+..+++++.+.|++++|.++++...+
T Consensus 487 ~~-~~~p~---~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~--~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 487 RA-PFKPT---VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN--NYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HC-CCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc--chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 43 11222 335555555555555666666666666555555433 455555555566666666666555543
No 27
>KOG0547|consensus
Probab=99.91 E-value=2.4e-20 Score=181.88 Aligned_cols=238 Identities=19% Similarity=0.260 Sum_probs=148.2
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|+...+...|..+|.. +| ....+|+.++..|...++.++-.+.|.+|..++|.++ .+|..-+++.+-.++
T Consensus 340 g~~~~a~~d~~~~I~l-~~-----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~----dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKL-DP-----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP----DVYYHRGQMRFLLQQ 409 (606)
T ss_pred CCchhhhhhHHHHHhc-Cc-----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC----chhHhHHHHHHHHHH
Confidence 5555555555555554 22 1334455555555555555555555555555555555 555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|..-|++++.++|.+ .- .|++..+.
T Consensus 410 ~e~A~aDF~Kai~L~pe~-----------------~~-----------------------------------~~iQl~~a 437 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPEN-----------------AY-----------------------------------AYIQLCCA 437 (606)
T ss_pred HHHHHHHHHHHhhcChhh-----------------hH-----------------------------------HHHHHHHH
Confidence 555555555555555542 11 11111222
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc------chHHHHHHHHHHHHH
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP------EEMFEMFNIYIKKAA 599 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~ 599 (703)
.|..++++++...|+.+.+..|.. ++++..+|+++...+++++|.+.|+.|+..-|. +..+.+-.+.+.+..
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 222345678888888888888887 678888888888888888888888888888777 445555555555554
Q ss_pred HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 600 EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
+ ++++.|.++..+|++.+|.... .+..++.++.++|+.++|+.+|+++...... ...+...+.--+..
T Consensus 516 k-~d~~~a~~Ll~KA~e~Dpkce~--A~~tlaq~~lQ~~~i~eAielFEksa~lArt--~~E~~~a~s~aeAA 583 (606)
T KOG0547|consen 516 K-EDINQAENLLRKAIELDPKCEQ--AYETLAQFELQRGKIDEAIELFEKSAQLART--ESEMVHAYSLAEAA 583 (606)
T ss_pred h-hhHHHHHHHHHHHHccCchHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 4 7788888888888888887544 7788888888888888888888888776432 24444444444433
No 28
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.91 E-value=2.6e-20 Score=209.93 Aligned_cols=432 Identities=12% Similarity=0.054 Sum_probs=312.6
Q ss_pred hhHHHHhcC--CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q psy6461 19 PYEEEILRN--PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKE--LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93 (703)
Q Consensus 19 ~~e~~l~~~--P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 93 (703)
.|+...... +.+...+..++.... .++++.+..++..+.+. .| +...+..++..+.+ .|+++.|..
T Consensus 109 ~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k--------~g~~~~A~~ 179 (697)
T PLN03081 109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVK--------CGMLIDARR 179 (697)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhc--------CCCHHHHHH
Confidence 445544433 346677888888777 88999999999988763 44 56666666665543 489999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC-
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF- 172 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~- 172 (703)
+|+++.. | +...|..++..+.+.|++++|..+|++.++..+. .+...+..++..+...|..+.+.+++..+++..
T Consensus 180 lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~ 255 (697)
T PLN03081 180 LFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255 (697)
T ss_pred HHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC
Confidence 9999853 4 6788999999999999999999999999986543 345677788888888899999998888776543
Q ss_pred -CCC--HHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhcc
Q psy6461 173 -PED--AEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249 (703)
Q Consensus 173 -p~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (703)
|+. ...++..+.+.|++++|.++|+.+..
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------------------------------------------------ 287 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------------------------------------------------ 287 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------------------------------------------------
Confidence 322 23568889999999999999987631
Q ss_pred chhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc--CCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHH
Q psy6461 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQTV--TTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELR 327 (703)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (703)
.+...|+.++..|.+.|+.++|..+|++..... |+...+..+...+..
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~------------------------------ 337 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR------------------------------ 337 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------------------------------
Confidence 113589999999999999999999999977642 332222211111110
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhc-CCCccCCchhHHHHHHHHHHHHcC
Q psy6461 328 LARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTV-DPKLAVGKLHTLWIEFGKFYEVND 406 (703)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~ 406 (703)
.|..++|.+++..+++.- ++ ...++..++..|.+.|
T Consensus 338 -------------------------------------~g~~~~a~~i~~~m~~~g~~~------d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 338 -------------------------------------LALLEHAKQAHAGLIRTGFPL------DIVANTALVDLYSKWG 374 (697)
T ss_pred -------------------------------------ccchHHHHHHHHHHHHhCCCC------CeeehHHHHHHHHHCC
Confidence 166677777777776652 22 2345667777777888
Q ss_pred ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCCcccccchhhHHHHHHhhHHHH
Q psy6461 407 QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA--TPARPVAYHDEAETVQARVYKSIKLW 484 (703)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
++++|..+|++..+. +. ..|+.++..+.+.|+.++|.++|++..+ ..|+ ...+
T Consensus 375 ~~~~A~~vf~~m~~~---d~----~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd------------------~~T~ 429 (697)
T PLN03081 375 RMEDARNVFDRMPRK---NL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN------------------HVTF 429 (697)
T ss_pred CHHHHHHHHHhCCCC---Ce----eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC------------------HHHH
Confidence 888888888876542 22 5688888888888888888888887664 3444 4556
Q ss_pred HHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHH
Q psy6461 485 SLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAK 560 (703)
Q Consensus 485 ~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 560 (703)
...+......|.+ ++|+.+.+...-.+....|...+..+.+ .|++++|.++++++- ..|+ ...|..+..
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r---~G~~~eA~~~~~~~~-~~p~---~~~~~~Ll~ 502 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR---EGLLDEAYAMIRRAP-FKPT---VNMWAALLT 502 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh---cCCHHHHHHHHHHCC-CCCC---HHHHHHHHH
Confidence 6666666666665 4455555433333444445555443333 467899999988742 3344 468999999
Q ss_pred HHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC
Q psy6461 561 LEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL 618 (703)
Q Consensus 561 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 618 (703)
....+|+.+.|..++++.++..|.+. ..|...+..+.+.|++++|.++++.+.+..
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~--~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKL--NNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCC--cchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999863 466777888888999999999999988764
No 29
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.91 E-value=8.9e-20 Score=175.82 Aligned_cols=498 Identities=15% Similarity=0.202 Sum_probs=275.5
Q ss_pred CCCccceeeeccCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy6461 2 ESTGFTGIYTTENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80 (703)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~ 80 (703)
.++-.....+-++++.+.+...|+.||++...|.++++++. ++..++.+++|+....-+|--+..|..|+.-++..
T Consensus 13 sa~kvae~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~--- 89 (660)
T COG5107 13 SADKVAEPSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR--- 89 (660)
T ss_pred ccccccCcccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhh---
Confidence 34444566778889999999999999999999999999999 99999999999999999999999999998766543
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh--HHHHHH----HHHHHH---hCCcccccccHHHHHHH
Q psy6461 81 KVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI--TQTRHV----FDRALR---ALPITQHHRVWPLYLSF 151 (703)
Q Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~A~~~----~~~al~---~~p~~~~~~~~~~~~~~ 151 (703)
+++..+..+|.|+|+..- +..+|..|+..--+.++. .++|.. |+=.+. ..| .....|..|+.|
T Consensus 90 -----~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~--~s~~~W~ey~~f 161 (660)
T COG5107 90 -----KDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEP--QSENYWDEYGLF 161 (660)
T ss_pred -----hhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccc--cccchHHHHHHH
Confidence 778888889999887755 377888777654332211 011211 111111 223 234445554444
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcccc
Q psy6461 152 VKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKI 231 (703)
Q Consensus 152 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~ 231 (703)
..
T Consensus 162 le------------------------------------------------------------------------------ 163 (660)
T COG5107 162 LE------------------------------------------------------------------------------ 163 (660)
T ss_pred HH------------------------------------------------------------------------------
Confidence 31
Q ss_pred ccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6461 232 RSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIA 311 (703)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 311 (703)
.|..++.|. ++.+.+..+..|.+++...-+ +...+|..|..||........+++.
T Consensus 164 ----------------------~~~~~~kwE-eQqrid~iR~~Y~ral~tP~~--nleklW~dy~~fE~e~N~~TarKfv 218 (660)
T COG5107 164 ----------------------YIEELGKWE-EQQRIDKIRNGYMRALQTPMG--NLEKLWKDYENFELELNKITARKFV 218 (660)
T ss_pred ----------------------hccccccHH-HHHHHHHHHHHHHHHHcCccc--cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222223333 445566677777777764322 4456777777777665433222211
Q ss_pred hCCCCCCcchHHHHHHHHHHHHHHhh-----hhhhhhhhhhhcCCC-cHHHHHHHHhhhc-------CCc--hhHHHHHH
Q psy6461 312 ENDTPSEEDDIELELRLARLEDLMER-----RLLLLNSVLLRQNPH-NVLEWHKRVRLFD-------GKP--LDIIRTYT 376 (703)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~p~-~~~~~~~~~~~~~-------~~~--~~a~~~~~ 376 (703)
-. -......+...+.++..- +...++.+.-..-|. ....|+..+.... |+. ....-+|+
T Consensus 219 ge------~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~ 292 (660)
T COG5107 219 GE------TSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHN 292 (660)
T ss_pred cc------cCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHH
Confidence 00 001112222222222110 000000000000111 2333555555432 222 23444677
Q ss_pred HHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 377 EAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARA 456 (703)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 456 (703)
+++..++- .+++|+.+..+....++-++|...-+++...+| .+-..|+..+...++-++....|+++
T Consensus 293 q~~~y~~~------~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp-------sL~~~lse~yel~nd~e~v~~~fdk~ 359 (660)
T COG5107 293 QILDYFYY------AEEVWFDYSEYLIGISDKQKALKTVERGIEMSP-------SLTMFLSEYYELVNDEEAVYGCFDKC 359 (660)
T ss_pred HHHHHhhh------hHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC-------chheeHHHHHhhcccHHHHhhhHHHH
Confidence 77766432 467888888888888888888888888876655 45666777776777777777777766
Q ss_pred hcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHh--c---CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCC
Q psy6461 457 TATPARPVAYHDEAETVQARVYKSIKLWSLYADLEES--F---GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTK 531 (703)
Q Consensus 457 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~ 531 (703)
++.- ...|..+... . |+++...+.+ .......-.+|+.++....+. ..
T Consensus 360 ~q~L-----------------------~r~ys~~~s~~~s~~D~N~e~~~Ell-~kr~~k~t~v~C~~~N~v~r~---~G 412 (660)
T COG5107 360 TQDL-----------------------KRKYSMGESESASKVDNNFEYSKELL-LKRINKLTFVFCVHLNYVLRK---RG 412 (660)
T ss_pred HHHH-----------------------HHHHhhhhhhhhccccCCccccHHHH-HHHHhhhhhHHHHHHHHHHHH---hh
Confidence 5422 1111111110 0 0110000000 000011223444444332322 22
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH-HcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEE-EHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQI 610 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 610 (703)
++.||.+|-++-+.--.. ..+|+..|.++. ..|++..|-.+|+-++..+|++ ...-..|+.+.+..++-..||.+
T Consensus 413 l~aaR~~F~k~rk~~~~~--h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~--~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 413 LEAARKLFIKLRKEGIVG--HHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDS--TLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred HHHHHHHHHHHhccCCCC--cceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhCcHHHHHHH
Confidence 466666666655432111 234444444432 3566666666666666666665 22334566666666666666666
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhH
Q psy6461 611 YERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFW 663 (703)
Q Consensus 611 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 663 (703)
|+++++..-+....++|-.++..+..-|+...+..+=++.....|.++-..++
T Consensus 489 Fetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF 541 (660)
T COG5107 489 FETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVF 541 (660)
T ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHH
Confidence 66666655444344466666666666666666666666666655554333333
No 30
>KOG0547|consensus
Probab=99.90 E-value=4.6e-20 Score=179.85 Aligned_cols=239 Identities=15% Similarity=0.192 Sum_probs=205.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
....|.++.-.|+.-.|..-|..+++++|..+ .+|+.++.+|...++.++-...|.+|..++|.+
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~----~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n----------- 393 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN----SLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN----------- 393 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccc----hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC-----------
Confidence 45557888889999999999999999999887 889999999999999999999999999999985
Q ss_pred HHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHH
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTL 554 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 554 (703)
+++|+..+++..-.+++ ++|..-|+++++++|.+ .-.
T Consensus 394 ------~dvYyHRgQm~flL~q~-----------------------------------e~A~aDF~Kai~L~pe~--~~~ 430 (606)
T KOG0547|consen 394 ------PDVYYHRGQMRFLLQQY-----------------------------------EEAIADFQKAISLDPEN--AYA 430 (606)
T ss_pred ------CchhHhHHHHHHHHHHH-----------------------------------HHHHHHHHHHhhcChhh--hHH
Confidence 78899999988776654 99999999999999999 568
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC------cchHHHHH
Q psy6461 555 YLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE------EPTRQMCL 628 (703)
Q Consensus 555 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~ 628 (703)
++.++..+.+.+.++++++.|+.+.+.+|.. ++.+..+...+..++++++|.+.|.+|+.+.|. +...-+.-
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 9999999999999999999999999999987 567888888888889999999999999999997 54422333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhc
Q psy6461 629 KFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQ 696 (703)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 696 (703)
..+.+.++ +++.+|.+++.+|+++ +|. ...-+..++.++.+.|+.++|.++++++-.+.++-.+-
T Consensus 509 a~l~~qwk-~d~~~a~~Ll~KA~e~-Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~ 573 (606)
T KOG0547|consen 509 ALLVLQWK-EDINQAENLLRKAIEL-DPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEM 573 (606)
T ss_pred hHhhhchh-hhHHHHHHHHHHHHcc-Cch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Confidence 33333334 8999999999999999 454 68889999999999999999999999888888765543
No 31
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=2.8e-18 Score=195.10 Aligned_cols=488 Identities=11% Similarity=0.053 Sum_probs=288.0
Q ss_pred HHhhcCchhHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 39 EHKKNAPKAIINTIYERSLKELPGS--YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 39 ~~~~~~~~~~a~~~~e~al~~~P~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
.+...|+++.|+.+|+.+.+...-. .-.+..++.... ..|.+++|..+|+.+.. | +...|..++..+
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~--------~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~ 447 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK--------KQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVC 447 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH--------HCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHH
Confidence 3334778888888888877654322 222222222221 23667778777776654 4 567777888888
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCHH--HHHHHHHhcCCHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF--PEDAE--DYIEYLSSIERLDEA 192 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~--~~~~~~~~~~~~~~A 192 (703)
.+.|+++.|+++|+++.+.... .+...|..++..+.+.|+.+.|.++|+++.+.. |+... .++..+.+.|++++|
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 8888888888888887775432 345677777777778888888888888777543 33222 345667778888888
Q ss_pred HHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHH
Q psy6461 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERAR 272 (703)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 272 (703)
..+|..+.... -.| +..+|..++..|.+.|++++|.
T Consensus 527 l~lf~~M~~~G----------------------v~P----------------------D~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 527 FGAYGIMRSKN----------------------VKP----------------------DRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHcC----------------------CCC----------------------CHHHHHHHHHHHHHCCCHHHHH
Confidence 88877764210 011 1246777788888888888888
Q ss_pred HHHHHHHhh----cCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy6461 273 DIYEEAIQT----VTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLR 348 (703)
Q Consensus 273 ~~~~~~l~~----~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (703)
.+|++.... .|+...+..+...+.
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~---------------------------------------------------- 590 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACA---------------------------------------------------- 590 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHH----------------------------------------------------
Confidence 888776542 232111111111110
Q ss_pred cCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc--CCCCc
Q psy6461 349 QNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV--PYTKV 426 (703)
Q Consensus 349 ~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~ 426 (703)
-.|+.++|.++|+++.+.-. ......|..++..|.+.|++++|..+|++..+. .|+ .
T Consensus 591 ---------------k~G~ldeA~elf~~M~e~gi-----~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~ 649 (1060)
T PLN03218 591 ---------------NAGQVDRAKEVYQMIHEYNI-----KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-E 649 (1060)
T ss_pred ---------------HCCCHHHHHHHHHHHHHcCC-----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H
Confidence 01666677777776655410 113456666677777777777777777776654 222 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHh
Q psy6461 427 EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEK 502 (703)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~ 502 (703)
..|..++..+.+.|++++|.++++++.+..... +...|..++..+.+.|++ ++|++
T Consensus 650 ----~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p----------------d~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 650 ----VFFSALVDVAGHAGDLDKAFEILQDARKQGIKL----------------GTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred ----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 556667777777777777777777766543211 256666777777766665 23333
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q psy6461 503 GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA--CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATG 580 (703)
Q Consensus 503 al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 580 (703)
+.+.- -.++...|...+..+.. .|++++|.++|+++... .|+ ...|..+...+.+.|++++|..++..+++
T Consensus 710 M~~~g-~~PdvvtyN~LI~gy~k---~G~~eeAlelf~eM~~~Gi~Pd---~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 710 IKSIK-LRPTVSTMNALITALCE---GNQLPKALEVLSEMKRLGLCPN---TITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHcC-CCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22211 12344555555544433 35678999999988764 455 35677777888888999999999988887
Q ss_pred ccCcchHHHHHHHHHHHHHH----hcC-------------------chHHHHHHHHHHHhC--CCcchHHHHHHHHHHHH
Q psy6461 581 AVLPEEMFEMFNIYIKKAAE----IYG-------------------IPKTRQIYERAIESL--PEEPTRQMCLKFAEMET 635 (703)
Q Consensus 581 ~~p~~~~~~~~~~~~~~~~~----~~~-------------------~~~A~~~~~~al~~~--p~~~~~~~~~~~a~~~~ 635 (703)
.....+ ..++...+.++.+ .+. .+.|..+|+++++.. |+. ..+........
T Consensus 783 ~Gi~pd-~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~---~T~~~vL~cl~ 858 (1060)
T PLN03218 783 DGIKPN-LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM---EVLSQVLGCLQ 858 (1060)
T ss_pred cCCCCC-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhc
Confidence 643322 3355555554432 111 245666777777653 442 23444445555
Q ss_pred HcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q psy6461 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN-EDTMREMLRIKRSVQ 690 (703)
Q Consensus 636 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~ 690 (703)
+.+..+.+..+++..... +...+...++.+.+- .|. .++|-.+++.+....
T Consensus 859 ~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g---~~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 859 LPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDG---FGEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred ccccHHHHHHHHHHhccC-CCCcchhhhHHHHHh---hccChHHHHHHHHHHHHcC
Confidence 566677776666653322 211134455554442 243 346666665555433
No 32
>KOG2076|consensus
Probab=99.89 E-value=3.2e-18 Score=179.46 Aligned_cols=567 Identities=16% Similarity=0.144 Sum_probs=331.7
Q ss_pred HHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy6461 35 LRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYG 113 (703)
Q Consensus 35 ~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 113 (703)
+.-+...- .|+++.|..++..+++++|..+..|..++..+..+ |+.+++...+-.|--.+|++...|...+
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr--------Gd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR--------GDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc--------ccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 33344444 79999999999999999999999999999988765 8999999999888888999999999999
Q ss_pred HHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH--------HHHHHHHh
Q psy6461 114 RFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE--------DYIEYLSS 185 (703)
Q Consensus 114 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~~ 185 (703)
....++|++++|+-.|.||++..|.+ .........++.+.|+...|...|.+++..+|.... ..++++..
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n--~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSN--WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999953 444455578888999999999999999999983221 12355555
Q ss_pred cCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHh
Q psy6461 186 IERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRS 265 (703)
Q Consensus 186 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (703)
.+.-+.|.+.+...+... .. ....+..+.++.+++..
T Consensus 293 ~~~~e~a~~~le~~~s~~------------------------~~-------------------~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKE------------------------KD-------------------EASLEDLNILAELFLKN 329 (895)
T ss_pred hhHHHHHHHHHHHHHhhc------------------------cc-------------------cccccHHHHHHHHHHHh
Confidence 555577777776665210 00 01123456677777777
Q ss_pred CchHHHHHHHHHHHhh--cCCcccHHHHHHHHHHHHHHHHH-HHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6461 266 GLFERARDIYEEAIQT--VTTVRDFTQVFDAYAQFEELSLN-KRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL 342 (703)
Q Consensus 266 ~~~~~A~~~~~~~l~~--~~~~~~~~~l~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (703)
..++.|....-..... .++...+ .. .+.+... ...-.++...+.. ....-+..++-.++..-..-. ++
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~----~~---~~~~~~~~~~~~~~~~~~s~~-l~v~rl~icL~~L~~~e~~e~-ll 400 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEW----DT---DERRREEPNALCEVGKELSYD-LRVIRLMICLVHLKERELLEA-LL 400 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhh----hh---hhhccccccccccCCCCCCcc-chhHhHhhhhhcccccchHHH-HH
Confidence 7777765544332221 1111110 00 0000000 0000000000000 000000000000000000000 00
Q ss_pred hhhhhhcC--C-CcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 343 NSVLLRQN--P-HNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDK 417 (703)
Q Consensus 343 ~~~~l~~~--p-~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 417 (703)
.- ....+ | +.+...+..+..+. |.+.+|+..|...+.. ++. ++..+|...|.+|...|.++.|...|++
T Consensus 401 ~~-l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~----~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 401 HF-LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGY----QNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred HH-HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccc----cchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 00 12233 3 35666666666554 8899999999987765 332 3577999999999999999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 418 ATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
++...|.+. .+.+.++.++.+.|++++|.+++.+...-++.+.. . .++.+..++...+.+++...|..
T Consensus 475 vl~~~p~~~----D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e--~------~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 475 VLILAPDNL----DARITLASLYQQLGNHEKALETLEQIINPDGRNAE--A------CAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHhcCCCch----hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh--h------ccccHHHHHHHHHHHHHHHhhhH
Confidence 999999998 89999999999999999999999987633322210 0 00011122223333333333222
Q ss_pred ---------------------------------------------------------hHHHhHhhcC-------CCCchH
Q psy6461 498 ---------------------------------------------------------KAYEKGIALF-------KWPYIF 513 (703)
Q Consensus 498 ---------------------------------------------------------~~~e~al~~~-------~~~~~~ 513 (703)
...++++..- -.....
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 1111111100 001133
Q ss_pred HHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHh----CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cC
Q psy6461 514 DIWNTYLTKFLS-RYGGTKLERARDLFEQCLEA----CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA-----VL 583 (703)
Q Consensus 514 ~~~~~y~~~~~~-~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p 583 (703)
+-|-.|...+.. ....+++.+|..+...++.. .+.....++-.....+-...+++..|.....-.+.. .|
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 345444433222 22345677777777777663 222211122211122223445555555555544444 22
Q ss_pred cchHHHHHH-----------------------------------HHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 584 PEEMFEMFN-----------------------------------IYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCL 628 (703)
Q Consensus 584 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 628 (703)
. ...+|. .+.......+.+..|...|-++...+|++|.+-+.+
T Consensus 703 ~--q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 703 Y--QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 1 122333 222222334667788888888888888888766666
Q ss_pred HHHHHHHHcCC--------HHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 629 KFAEMETKLGE--------IDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 629 ~~a~~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
+.+.+...+++ .-++..++.|-.++-.++.....+-+.++..-..|-.--|.+..
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YY 843 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYY 843 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 66655555443 33455555555444333224556666777777777777776666
No 33
>KOG1914|consensus
Probab=99.89 E-value=3.2e-19 Score=176.10 Aligned_cols=442 Identities=18% Similarity=0.254 Sum_probs=301.6
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHH
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYED 90 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (703)
-+++.|..||..+...|.++.+|..+++.+. .++++...++|.|+|..- .+.++|..|+.+..+.-.... |--+.
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~---~~r~~ 109 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLF---GYREK 109 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcc---hHHHH
Confidence 4577889999999999999999999999998 999999999999999754 459999999988665322111 11123
Q ss_pred HHHHHHHHHHh---cCCCHHHHHHHHHHHHh---------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 91 VNNTFERSLVF---MHKMPRIWLDYGRFLMD---------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 91 A~~~~~~al~~---~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
..+.|+-++.. ++.+.++|..|+.++.. +++++..|++|+|||. .|..+...+|..|..|+..-+.
T Consensus 110 m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~-tPm~nlEkLW~DY~~fE~~IN~- 187 (656)
T KOG1914|consen 110 MVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV-TPMHNLEKLWKDYEAFEQEINI- 187 (656)
T ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHHHHHHH-
Confidence 44556656554 57899999999999854 4588999999999999 8987789999999999866542
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhc------cccc-----ccccCCchhhhHHHHHHHHhcC
Q psy6461 159 ETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVN------KESF-----VSKHGKSNHQLWNELCEMISQN 227 (703)
Q Consensus 159 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~------~~~~-----~~~~~~~~~~~w~~~~~~l~~~ 227 (703)
-.|+++.. .....|..|+++++++.+ ...+ .++...+.+++|..++.+.+.+
T Consensus 188 ~tarK~i~-----------------e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 188 ITARKFIG-----------------ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHH-----------------hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 23333221 123344555555555432 1111 1112223455566666666655
Q ss_pred ccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHH
Q psy6461 228 PDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRM 307 (703)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 307 (703)
|-...+.. . --.+..-+|++++...+-. ..+|..+..+-....+-..
T Consensus 251 pL~t~~~~------------------~------------~~~Rv~yayeQ~ll~l~~~---peiWy~~s~yl~~~s~l~~ 297 (656)
T KOG1914|consen 251 PLRTLDGT------------------M------------LTRRVMYAYEQCLLYLGYH---PEIWYDYSMYLIEISDLLT 297 (656)
T ss_pred Cccccccc------------------H------------HHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhHHHH
Confidence 54321000 0 0012334566666644332 2455555554443321100
Q ss_pred HHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCcc
Q psy6461 308 EEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLA 387 (703)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 387 (703)
. .-.+|.. ..-.+++.++|+++|.....
T Consensus 298 ~--------------------------------------~~d~~~a-----------~~~t~e~~~~yEr~I~~l~~--- 325 (656)
T KOG1914|consen 298 E--------------------------------------KGDVPDA-----------KSLTDEAASIYERAIEGLLK--- 325 (656)
T ss_pred H--------------------------------------hcccccc-----------hhhHHHHHHHHHHHHHHHHH---
Confidence 0 0000000 01246788999999887432
Q ss_pred CCchhHHHHHHHHHHHHcCC---hHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q psy6461 388 VGKLHTLWIEFGKFYEVNDQ---LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
.+..++..++.+.+..-+ .+..-.+|++++.+...++ .-+|+.|..+-.+......|+.+|.+|.+.....
T Consensus 326 --~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~---tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~- 399 (656)
T KOG1914|consen 326 --ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL---TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR- 399 (656)
T ss_pred --HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC---ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc-
Confidence 356678888888775444 7888899999998855444 2679999999999999999999999998765431
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
..++..-+-++.. -+++..-|-.+|+-+++
T Consensus 400 ----------------hhVfVa~A~mEy~----------------------------------cskD~~~AfrIFeLGLk 429 (656)
T KOG1914|consen 400 ----------------HHVFVAAALMEYY----------------------------------CSKDKETAFRIFELGLK 429 (656)
T ss_pred ----------------chhhHHHHHHHHH----------------------------------hcCChhHHHHHHHHHHH
Confidence 3444444333322 23455889999999999
Q ss_pred hCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA-VLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLP 619 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (703)
..++. +..-..|..++...|+-+.|+.+|++++.. .|.+-...+|..++.++..-|++..++++-++-....|
T Consensus 430 kf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 430 KFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 99998 678888999999999999999999999987 34344568999999999999999999999888888777
No 34
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.89 E-value=9e-19 Score=199.06 Aligned_cols=426 Identities=10% Similarity=0.083 Sum_probs=267.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
+...+++.+...+ +...++.....+.+.|++++|+++|+...+..........+..+...+.+.|..+.|..+++....
T Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~ 434 (1060)
T PLN03218 356 SLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN 434 (1060)
T ss_pred hHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 4455555555544 345555555666788999999999999877543222233445556677788889999998887765
Q ss_pred hCCCCHH--HHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhc
Q psy6461 171 LFPEDAE--DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYT 248 (703)
Q Consensus 171 ~~p~~~~--~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (703)
|+... .++..+...|++++|.++|..+.... . .
T Consensus 435 --pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l---------------~--------------------- 469 (1060)
T PLN03218 435 --PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------L---------------K--------------------- 469 (1060)
T ss_pred --CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------C---------------C---------------------
Confidence 54332 35666788999999999998875210 0 1
Q ss_pred cchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc--CCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHH
Q psy6461 249 DQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV--TTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326 (703)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (703)
....+|..++..|.+.|+.+.|..+|++..... |+...+..+..+|..
T Consensus 470 -pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k----------------------------- 519 (1060)
T PLN03218 470 -ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR----------------------------- 519 (1060)
T ss_pred -CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----------------------------
Confidence 123578888888999999999999998877642 332222222111110
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHh-cCCCccCCchhHHHHHHHHHHHHc
Q psy6461 327 RLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKT-VDPKLAVGKLHTLWIEFGKFYEVN 405 (703)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~~~~~~~~a~~~~~~ 405 (703)
.|+.++|..+|+++... +.| +...|..+...+.+.
T Consensus 520 --------------------------------------~G~~eeAl~lf~~M~~~Gv~P------D~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 520 --------------------------------------AGQVAKAFGAYGIMRSKNVKP------DRVVFNALISACGQS 555 (1060)
T ss_pred --------------------------------------CcCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHC
Confidence 14555555555554432 111 233455555555555
Q ss_pred CChHHHHHHHHHhhcc----CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhH
Q psy6461 406 DQLEDARLIFDKATLV----PYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSI 481 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 481 (703)
|++++|.++|+++... .|+ . ..|..++..+.+.|++++|.++|++..+..... +.
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD-~----vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p----------------~~ 614 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPD-H----ITVGALMKACANAGQVDRAKEVYQMIHEYNIKG----------------TP 614 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCc-H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----------------Ch
Confidence 5555555555555431 121 1 445555555555555555555555555443211 24
Q ss_pred HHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhC--CCcchHHHH
Q psy6461 482 KLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC--PPRYAKTLY 555 (703)
Q Consensus 482 ~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 555 (703)
..|...+..+.+.|++ .+|+++...-- .++...|...+..+.. .+++++|.++++.+.+.. |+ ...|
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k---~G~~eeA~~l~~eM~k~G~~pd---~~ty 687 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGH---AGDLDKAFEILQDARKQGIKLG---TVSY 687 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCC---HHHH
Confidence 4555555555555554 22222222111 1223333333332221 355699999999998863 33 4689
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc--cCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh--CCCcchHHHHHHHH
Q psy6461 556 LLYAKLEEEHGLARHAMAVYERATGA--VLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFA 631 (703)
Q Consensus 556 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a 631 (703)
..++..+.+.|++++|..+|+.+... .|+ ...|...+..+.+.|++++|..+|+++... .|+ ...|..++
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd---vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd---~~Ty~sLL 761 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPT---VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN---TITYSILL 761 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Confidence 99999999999999999999988654 343 467999999999999999999999988765 455 33677778
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 632 EMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
..+.+.|+++.|..++..+.+.. ...+..+++.+..++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~ 800 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Confidence 88889999999999999998763 2224677777766544
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=1.1e-17 Score=185.16 Aligned_cols=479 Identities=13% Similarity=0.050 Sum_probs=309.8
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
..|..+..-..-+.... +|+++.|+..|+++++.+|.+......++.+... .|+.++|+..+++++.-.|.
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~--------~G~~~~A~~~~eka~~p~n~ 100 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW--------AGRDQEVIDVYERYQSSMNI 100 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH--------cCCcHHHHHHHHHhccCCCC
Confidence 46776665554444444 9999999999999999999995333365555433 28899999999999944455
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH--HH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI--EY 182 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~--~~ 182 (703)
+.......+..+...|++++|..+|+++++.+|. ++.++..++..+...++.++|+..+++++..+|....... .+
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL 178 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYL 178 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence 5555556688999999999999999999999995 4778888888888899999999999999999998665422 22
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (703)
+...++..+|+..++++++. +|.. .+++..+....
T Consensus 179 ~~~~~~~~~AL~~~ekll~~------------------------~P~n---------------------~e~~~~~~~~l 213 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRL------------------------APTS---------------------EEVLKNHLEIL 213 (822)
T ss_pred HHhcchHHHHHHHHHHHHHh------------------------CCCC---------------------HHHHHHHHHHH
Confidence 33456776788888888642 2221 24556666666
Q ss_pred HHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-CCcchHHHHHHHHHHHHHHhhhhhh
Q psy6461 263 IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTP-SEEDDIELELRLARLEDLMERRLLL 341 (703)
Q Consensus 263 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (703)
.+.|-...|.++.++--...... + ..+......-+... .....+. ..........+++.++.++.+
T Consensus 214 ~~~~~~~~a~~l~~~~p~~f~~~-~--~~~l~~~~~a~~vr------~a~~~~~~~~~r~~~~d~ala~~~~l~~~---- 280 (822)
T PRK14574 214 QRNRIVEPALRLAKENPNLVSAE-H--YRQLERDAAAEQVR------MAVLPTRSETERFDIADKALADYQNLLTR---- 280 (822)
T ss_pred HHcCCcHHHHHHHHhCccccCHH-H--HHHHHHHHHHHHHh------hcccccccchhhHHHHHHHHHHHHHHHhh----
Confidence 66676666665555422211111 1 11111111111100 0000111 111122344556666665321
Q ss_pred hhhhhhhcCCCcHHHHHH----HHhh--hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHH
Q psy6461 342 LNSVLLRQNPHNVLEWHK----RVRL--FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIF 415 (703)
Q Consensus 342 ~~~~~l~~~p~~~~~~~~----~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 415 (703)
...+|.....|.. ++-. ..+++.++++.|+..-..-.+ .| ..+...+|..|...++.++|..+|
T Consensus 281 -----~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~---~P--~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 281 -----WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK---MP--DYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred -----ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC---CC--HHHHHHHHHHHHhcCCcHHHHHHH
Confidence 2345654444422 2211 228899999999875533111 12 335666789999999999999999
Q ss_pred HHhhccCCC---CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHH
Q psy6461 416 DKATLVPYT---KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEE 492 (703)
Q Consensus 416 ~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (703)
+.++...|. ++.++ .....+.-.++..+++++|..++++..+..|..+......
T Consensus 351 ~~~~~~~~~~~~~~~~~-~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~---------------------- 407 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDL-LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP---------------------- 407 (822)
T ss_pred HHHhhccccccCCCcch-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC----------------------
Confidence 999886431 11111 1123333344678899999999999988666321100000
Q ss_pred hcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHH
Q psy6461 493 SFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAM 572 (703)
Q Consensus 493 ~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 572 (703)
...|.|+........+.. ..-.|++++|.+.+++.+...|.| ..+++.+|.++...|.+.+|.
T Consensus 408 ------------~~~pn~d~~~~~~l~a~~---~~~~gdl~~Ae~~le~l~~~aP~n--~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 408 ------------GKEPNDDWIEGQTLLVQS---LVALNDLPTAQKKLEDLSSTAPAN--QNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred ------------CCCCCccHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHH
Confidence 000111111111111100 002467799999999999999999 679999999999999999999
Q ss_pred HHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH
Q psy6461 573 AVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 573 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 624 (703)
..++.+....|.+..+. .+.+.....++++++|..+....++..|+++.+
T Consensus 471 ~~~k~a~~l~P~~~~~~--~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 471 QELKAVESLAPRSLILE--RAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhhCCccHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 99999999999885443 344444555789999999999999999998863
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.7e-17 Score=183.68 Aligned_cols=447 Identities=11% Similarity=-0.019 Sum_probs=304.6
Q ss_pred CCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q psy6461 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 93 (703)
+....|+++++.+|.+......++.+.. .|+.++|+..+++++.-.|.+...-...+...... |++++|..
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~--------gdyd~Aie 123 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE--------KRWDQALA 123 (822)
T ss_pred HHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc--------CCHHHHHH
Confidence 3446899999999999644447777777 89999999999999944444444444445555443 89999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 173 (703)
+|+++++.+|+++.++..++..+...++.++|...+++++..+|.. ......+.++...++..+|+..|+++++.+|
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~---~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV---QNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch---HHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999952 2234445555556667679999999999999
Q ss_pred CCHHHHHHHH---HhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccc
Q psy6461 174 EDAEDYIEYL---SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250 (703)
Q Consensus 174 ~~~~~~~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (703)
++.+.+..++ ...|-..-|.+....- +.+.+. ....|+.. +.+.+
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~---p~~f~~----~~~~~l~~----------------~~~a~--------- 248 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKEN---PNLVSA----EHYRQLER----------------DAAAE--------- 248 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhC---ccccCH----HHHHHHHH----------------HHHHH---------
Confidence 9998765554 4566555555444321 111000 00111111 00000
Q ss_pred hhhHHHHHHHHHH-----HhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHH
Q psy6461 251 LGHLWNSLADYYI-----RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELE 325 (703)
Q Consensus 251 ~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (703)
...++.... +---.+.|..-++.++...+..+.....|... .+ .+++ ..
T Consensus 249 ----~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~-~~-Drl~--------------------aL 302 (822)
T PRK14574 249 ----QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRA-RI-DRLG--------------------AL 302 (822)
T ss_pred ----HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH-HH-HHHH--------------------HH
Confidence 001110000 11134557777777777443322211222111 00 0000 01
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHc
Q psy6461 326 LRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVN 405 (703)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 405 (703)
..+..+..+++....+-.. -..-|..+..|..-+.+..+.+++|..+|++++..-++....+........+--.+...
T Consensus 303 ~~r~r~~~vi~~y~~l~~~--~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAE--GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHhhhHHHHHHHHHHhhhc--CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 1122222333222221111 22347888888888888889999999999998875322111111122234555566789
Q ss_pred CChHHHHHHHHHhhccCC------------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 406 DQLEDARLIFDKATLVPY------------TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
+++++|..+.++..+..| .| ++........+..+.-.|+..+|.+.+++.+...|.+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn-~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n---------- 449 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN-DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN---------- 449 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Confidence 999999999999988555 12 2344666777888888999999999999999999995
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
..++..+++++...|.. .+|++.++.+....|++ ..
T Consensus 450 -------~~l~~~~A~v~~~Rg~p-----------------------------------~~A~~~~k~a~~l~P~~--~~ 485 (822)
T PRK14574 450 -------QNLRIALASIYLARDLP-----------------------------------RKAEQELKAVESLAPRS--LI 485 (822)
T ss_pred -------HHHHHHHHHHHHhcCCH-----------------------------------HHHHHHHHHHhhhCCcc--HH
Confidence 88999999998887664 99999999999999998 56
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcchH
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEM 587 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 587 (703)
+....+...+..|++.+|..+.+..+...|++..
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 8899999999999999999999999999999854
No 37
>KOG2076|consensus
Probab=99.85 E-value=1.3e-15 Score=160.08 Aligned_cols=608 Identities=13% Similarity=0.074 Sum_probs=378.4
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..+..+|+++|.+..+|..++..+. +|+.+++....=.|--.+|.+.+.|..++..-.++ |.+++|+-.|.
T Consensus 160 ~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~--------~~i~qA~~cy~ 231 (895)
T KOG2076|consen 160 EILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL--------GNINQARYCYS 231 (895)
T ss_pred HHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc--------ccHHHHHHHHH
Confidence 6788999999999999999999999 99999999998889899999999999999887665 88999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc---ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ---HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 173 (703)
+|++.+|.+-........++.+.|+...|...|.++++..|... ...+-..++..+...++-+.|.+.++.++...-
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999210 011222335555666666999999999988332
Q ss_pred C-----CHHHHHHHHHhcCCHHHHHHHHHHhhcc----cc--c-------------ccccCCchhh--hHHHHHHHHhcC
Q psy6461 174 E-----DAEDYIEYLSSIERLDEAAVKLAYIVNK----ES--F-------------VSKHGKSNHQ--LWNELCEMISQN 227 (703)
Q Consensus 174 ~-----~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~--~-------------~~~~~~~~~~--~w~~~~~~l~~~ 227 (703)
+ +...++.+++...+++.|.........+ ++ + .......++. .....+++..-+
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 2 2225677788888888887776555431 00 0 0000000111 111112222111
Q ss_pred ccccccccHHHHHHhHhhhh--ccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHH
Q psy6461 228 PDKIRSLNVDAIIRGGLRRY--TDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNK 305 (703)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~ 305 (703)
.. ...+.++....... +...++++..+++.+.+.|++.+|..+|-.++...+... .-+|...+.......
T Consensus 392 ~~----e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~a~c~~~l~-- 463 (895)
T KOG2076|consen 392 ER----ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--AFVWYKLARCYMELG-- 463 (895)
T ss_pred cc----chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--hhhhHHHHHHHHHHh--
Confidence 11 12233344333333 445677899999999999999999999999887655432 446655555544332
Q ss_pred HHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcC
Q psy6461 306 RMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVD 383 (703)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~ 383 (703)
....++..|+.+ +...|++.++...++.++. |+.++|.++++..+.- +
T Consensus 464 -----------------e~e~A~e~y~kv------------l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~-D 513 (895)
T KOG2076|consen 464 -----------------EYEEAIEFYEKV------------LILAPDNLDARITLASLYQQLGNHEKALETLEQIINP-D 513 (895)
T ss_pred -----------------hHHHHHHHHHHH------------HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC-C
Confidence 122234455554 7889999999999998876 8899888888875421 1
Q ss_pred ----CCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhh----cc---CC-----------------------------
Q psy6461 384 ----PKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKAT----LV---PY----------------------------- 423 (703)
Q Consensus 384 ----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~---~~----------------------------- 423 (703)
+...+.....+...++..+...|+.++=+.+-...+ ++ .|
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~ 593 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAR 593 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHH
Confidence 111222234455555666666665444211100000 00 00
Q ss_pred --------------------------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccc--cchhhHHH
Q psy6461 424 --------------------------TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYH--DEAETVQA 475 (703)
Q Consensus 424 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~--~~~~~~~~ 475 (703)
-+.++-.+++..++..+...++.++|..+...|+....-...-. ....-++.
T Consensus 594 ~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l 673 (895)
T KOG2076|consen 594 EKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGL 673 (895)
T ss_pred hccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 00000123444455556677889999999888887543210000 00000000
Q ss_pred H--H-HhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchH
Q psy6461 476 R--V-YKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAK 552 (703)
Q Consensus 476 ~--~-~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 552 (703)
. + ..++..|+.|++....+-++ ..++....+|..+...+.... +--.-...+.++....|++. +
T Consensus 674 ~~s~~~~d~~~a~~~lR~~i~~~~~---------~~~~~q~~l~n~~~s~~~~~~---q~v~~~R~~~~~~~~~~~~~-~ 740 (895)
T KOG2076|consen 674 KASLYARDPGDAFSYLRSVITQFQF---------YLDVYQLNLWNLDFSYFSKYG---QRVCYLRLIMRLLVKNKDDT-P 740 (895)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCccCC-c
Confidence 0 0 11233333333322211000 012345566773333222221 11223345555555666663 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHH--HHHHHHHHHHh------cCchHHHHHHHHHHHhCCCcchH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEM--FNIYIKKAAEI------YGIPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~ 624 (703)
.+.+.+|+.....+.+..|+..|-++....|+++...+ -..++....+. -..-++.....+-.+..-.....
T Consensus 741 ~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~Q 820 (895)
T KOG2076|consen 741 PLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQ 820 (895)
T ss_pred ceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHH
Confidence 58888999999999999999999999999999764433 33444444331 11223333343343433221233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC----------ChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 625 QMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV----------TAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 625 ~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
++....|+.+...|=..-|...|++++...|++. ....--++.-+++..|+...|+.+++
T Consensus 821 Ea~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 821 EAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 4889999999999999999999999999853321 13334456677888899998888774
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.5e-17 Score=175.42 Aligned_cols=162 Identities=16% Similarity=0.152 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
++..++..+...|++++|...|+++++..|.+. ..+..++.++.+.|++++|...|++++...|..
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------- 247 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCV----RASILLGDLALAQGDYAAAIEALERVEEQDPEY---------- 247 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh----------
Confidence 345667777778888888888888888877765 678888888888888888888888888777653
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
....+...+.++...|+ +++|...++++++..|+. .
T Consensus 248 ------~~~~~~~l~~~~~~~g~-----------------------------------~~~A~~~l~~~~~~~p~~---~ 283 (389)
T PRK11788 248 ------LSEVLPKLMECYQALGD-----------------------------------EAEGLEFLRRALEEYPGA---D 283 (389)
T ss_pred ------HHHHHHHHHHHHHHcCC-----------------------------------HHHHHHHHHHHHHhCCCc---h
Confidence 13444555555554444 488888888888888875 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH---hcCchHHHHHHHHHHH
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE---IYGIPKTRQIYERAIE 616 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~ 616 (703)
.+..++.++...|++++|..+++++++..|++.. +..++..... .|+.+++..++++.++
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~---~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG---FHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH---HHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 4477888888888888888888888888887532 2222222221 3355566555555553
No 39
>KOG2396|consensus
Probab=99.83 E-value=4.8e-16 Score=152.94 Aligned_cols=495 Identities=19% Similarity=0.266 Sum_probs=284.4
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh-c--------------------CchhHHHHHHHHHHhhCCCCHHHHHHH
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK-N--------------------APKAIINTIYERSLKELPGSYKLWYNY 70 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~--------------------~~~~~a~~~~e~al~~~P~~~~~w~~~ 70 (703)
.|.+.|..||-.|+..-.+.+.++.|+.++. . .-..+...+|.+|+..+|.|+.+|..|
T Consensus 32 ~Ivk~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~y 111 (568)
T KOG2396|consen 32 EIVKKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSY 111 (568)
T ss_pred HHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4566778899999877778899999998875 1 113567889999999999999999999
Q ss_pred HHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccC-hHHHHHHHHHHHHhCCcccccccHHHHH
Q psy6461 71 LKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHK-ITQTRHVFDRALRALPITQHHRVWPLYL 149 (703)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~ 149 (703)
+.+..+. +.+.+..++|.+++..+|++|.+|+..+.+++.-+. ++.||.+|.++|+.+|. .+.+|..|.
T Consensus 112 i~f~kk~--------~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd--sp~Lw~eyf 181 (568)
T KOG2396|consen 112 IAFCKKK--------KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD--SPKLWKEYF 181 (568)
T ss_pred HHHHHHh--------cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 9996543 557889999999999999999999999999998764 99999999999999994 599999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcc
Q psy6461 150 SFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPD 229 (703)
Q Consensus 150 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~ 229 (703)
+++...- ++ ...-++.+..+..+.. ....+.+.+-..+..-.+. ..+
T Consensus 182 rmEL~~~--~K-l~~rr~~~g~~~~~~~------~eie~ge~~~~~~~~s~~~-----~~~------------------- 228 (568)
T KOG2396|consen 182 RMELMYA--EK-LRNRREELGLDSSDKD------EEIERGELAWINYANSVDI-----IKG------------------- 228 (568)
T ss_pred HHHHHHH--HH-HHHHHHHhccccchhH------HHHHHHHHHHHhhccchhh-----hhc-------------------
Confidence 9976531 11 1122233333333221 0000000000000000000 000
Q ss_pred ccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy6461 230 KIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEE 309 (703)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 309 (703)
.+.+.. +. -....-..++..+ .+++......|+.. .+|...+. +..+.....
T Consensus 229 ~~k~~e-~~-------------------~~~~~d~~kel~k--~i~d~~~~~~~~np---~~~~~laq---r~l~i~~~t 280 (568)
T KOG2396|consen 229 AVKSVE-LS-------------------VAEKFDFLKELQK--NIIDDLQSKAPDNP---LLWDDLAQ---RELEILSQT 280 (568)
T ss_pred chhhcc-hH-------------------HHHHHHHHHHHHH--HHHHHHhccCCCCC---ccHHHHHH---HHHHHHHHh
Confidence 000000 00 0000000011111 11111111122211 01110000 000000000
Q ss_pred hhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc-CCchhHHHHHHHHHHhcCCCccC
Q psy6461 310 IAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD-GKPLDIIRTYTEAVKTVDPKLAV 388 (703)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~ 388 (703)
. ..+.+-..- ..+. .+......+|+.++..++
T Consensus 281 d--------------------------------------l~~~~~~~~----~~~~~~k~s~~~~v~ee~v~~l~----- 313 (568)
T KOG2396|consen 281 D--------------------------------------LQHTDNQAK----AVEVGSKESRCCAVYEEAVKTLP----- 313 (568)
T ss_pred h--------------------------------------ccchhhhhh----chhcchhHHHHHHHHHHHHHHhh-----
Confidence 0 000000000 0000 112334567888877653
Q ss_pred CchhHHHHHHHHHHHH-----cC-ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCC
Q psy6461 389 GKLHTLWIEFGKFYEV-----ND-QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARAT-ATPA 461 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~-----~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~p 461 (703)
....|-.|..+... .| .+..-..+|+.+........ ...-.|+...+......+++.+..... ....
T Consensus 314 --t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~----~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~ 387 (568)
T KOG2396|consen 314 --TESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSE----CLYKQYSVLLLCLNTLNEAREVAVKLTTELFR 387 (568)
T ss_pred --HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccc----chHHHHHHHHHHHhccchHhHHHHHhhHHHhc
Confidence 34556555555432 22 44556667777666543332 333444444333333334444333322 2333
Q ss_pred CCcccccchhhHHHHHHhhHHHHHHHHHHHHhc-CCh-hHHHh---HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHH
Q psy6461 462 RPVAYHDEAETVQARVYKSIKLWSLYADLEESF-GTF-KAYEK---GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERAR 536 (703)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~e~---al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~ 536 (703)
+ +..+|..+.+.+... .++ -.|++ .++.++..+....|...+. ... -..+.-.
T Consensus 388 ~-----------------s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~---~ds--l~~~~~~ 445 (568)
T KOG2396|consen 388 D-----------------SGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASE---GDS--LQEDTLD 445 (568)
T ss_pred c-----------------hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhh---ccc--hhHHHHH
Confidence 3 478898888877633 333 22333 3334444556666666551 000 0012222
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH--hcCchHHHHHHHHH
Q psy6461 537 DLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE--IYGIPKTRQIYERA 614 (703)
Q Consensus 537 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a 614 (703)
.++...++....+. .++-..|-.+....|...+|+++|.+.....|.+ +.++...++++.. .-++.-+|.+|+.|
T Consensus 446 ~Ii~a~~s~~~~~~-~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~s--l~l~r~miq~e~~~~sc~l~~~r~~yd~a 522 (568)
T KOG2396|consen 446 LIISALLSVIGADS-VTLKSKYLDWAYESGGYKKARKVYKSLQELPPFS--LDLFRKMIQFEKEQESCNLANIREYYDRA 522 (568)
T ss_pred HHHHHHHHhcCCce-eehhHHHHHHHHHhcchHHHHHHHHHHHhCCCcc--HHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 33444444333332 3577778888889999999999999998888876 6789999999865 34578889999999
Q ss_pred HHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 615 IESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 615 l~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+..+..++. +|+.|-.++...|..+.+-.+|.||++...++
T Consensus 523 ~~~fg~d~~--lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 523 LREFGADSD--LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHhCCChH--HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 998886544 99999999999999999999999999876554
No 40
>KOG1155|consensus
Probab=99.81 E-value=6.4e-16 Score=150.38 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=100.1
Q ss_pred CchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCH
Q psy6461 367 KPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446 (703)
Q Consensus 367 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (703)
+.+.|+..|++|++.. | .+..+|...|.-|...++...|+..|++|+.++|.+- ..|+.+|+.|--.+-.
T Consensus 345 eHEKAv~YFkRALkLN-p-----~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy----RAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLN-P-----KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY----RAWYGLGQAYEIMKMH 414 (559)
T ss_pred hHHHHHHHHHHHHhcC-c-----chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH----HHHhhhhHHHHHhcch
Confidence 3455566666666542 2 3455677777777777777777777777777777664 6677777777666666
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHH
Q psy6461 447 EAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSR 526 (703)
Q Consensus 447 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~ 526 (703)
.=|+-.|++|+...|+| +++|..+++++...+++
T Consensus 415 ~YaLyYfqkA~~~kPnD-----------------sRlw~aLG~CY~kl~~~----------------------------- 448 (559)
T KOG1155|consen 415 FYALYYFQKALELKPND-----------------SRLWVALGECYEKLNRL----------------------------- 448 (559)
T ss_pred HHHHHHHHHHHhcCCCc-----------------hHHHHHHHHHHHHhccH-----------------------------
Confidence 77777777777777764 67777777776665544
Q ss_pred hCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q psy6461 527 YGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATG 580 (703)
Q Consensus 527 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 580 (703)
++|...|.+++.....+ ...+..+|+++.+.++.++|...|++.++
T Consensus 449 ------~eAiKCykrai~~~dte--~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 449 ------EEAIKCYKRAILLGDTE--GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ------HHHHHHHHHHHhccccc--hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 67777777777765554 34667777777777777777777776665
No 41
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=1.7e-16 Score=167.40 Aligned_cols=289 Identities=17% Similarity=0.159 Sum_probs=220.7
Q ss_pred hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc
Q psy6461 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 364 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
..|++++|+..|++++.. .| .+..++..++.++...|++++|..++++++...+.........+..++..+.+.
T Consensus 47 ~~~~~~~A~~~~~~al~~-~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKV-DP-----ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred hcCChHHHHHHHHHHHhc-Cc-----ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 348899999999999986 33 356788999999999999999999999998864332212235688889999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHH
Q psy6461 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTY 519 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y 519 (703)
|++++|..+|+++++..|.+ ...+..++.++...|++ ..++++++..|.+........|
T Consensus 121 g~~~~A~~~~~~~l~~~~~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFA-----------------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred CCHHHHHHHHHHHHcCCcch-----------------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999999999999887763 67788888888888886 5556665554443332222222
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHH
Q psy6461 520 LTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAA 599 (703)
Q Consensus 520 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 599 (703)
..........+++++|...|+++++..|++ ...+..++.++...|++++|...|++++...|.+. ...+...+..+.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~l~~~~~ 260 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYL-SEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-HHHHHHHHHHHH
Confidence 222222234678999999999999999987 56899999999999999999999999999887643 245566667777
Q ss_pred HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH---cCCH
Q psy6461 600 EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT---HGNE 676 (703)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~g~~ 676 (703)
..|++++|...++++++..|+.. .+..++.++.+.|++++|..+++++++.. |+ .. .+..+...... +|..
T Consensus 261 ~~g~~~~A~~~l~~~~~~~p~~~---~~~~la~~~~~~g~~~~A~~~l~~~l~~~-P~-~~-~~~~l~~~~~~~~~~g~~ 334 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEYPGAD---LLLALAQLLEEQEGPEAAQALLREQLRRH-PS-LR-GFHRLLDYHLAEAEEGRA 334 (389)
T ss_pred HcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-cC-HH-HHHHHHHHhhhccCCccc
Confidence 88999999999999999999763 45889999999999999999999999984 44 23 34444444332 4577
Q ss_pred HHHHHHHH
Q psy6461 677 DTMREMLR 684 (703)
Q Consensus 677 ~~~~~~~~ 684 (703)
+++..+++
T Consensus 335 ~~a~~~~~ 342 (389)
T PRK11788 335 KESLLLLR 342 (389)
T ss_pred hhHHHHHH
Confidence 77776664
No 42
>KOG1070|consensus
Probab=99.81 E-value=1.5e-17 Score=180.34 Aligned_cols=260 Identities=18% Similarity=0.324 Sum_probs=225.6
Q ss_pred HHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHHHHHcCCHHHH
Q psy6461 371 IIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV-PYTKVEDLATVWCEWAELELRAGQEEAA 449 (703)
Q Consensus 371 a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A 449 (703)
-.+.|++.+.. .| +..-+|+.|..++...++.++||++.++||.. ++...++...+|..|.+++...|.-+..
T Consensus 1443 saeDferlvrs-sP-----NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1443 SAEDFERLVRS-SP-----NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CHHHHHHHHhc-CC-----CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 44566666665 33 56779999999999999999999999999986 6666566678999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCC
Q psy6461 450 LRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGG 529 (703)
Q Consensus 450 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~ 529 (703)
.++|+||-+.+.. ..++..+..++...+.+
T Consensus 1517 ~kVFeRAcqycd~------------------~~V~~~L~~iy~k~ek~-------------------------------- 1546 (1710)
T KOG1070|consen 1517 KKVFERACQYCDA------------------YTVHLKLLGIYEKSEKN-------------------------------- 1546 (1710)
T ss_pred HHHHHHHHHhcch------------------HHHHHHHHHHHHHhhcc--------------------------------
Confidence 9999999998753 57777777777766554
Q ss_pred CChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHH
Q psy6461 530 TKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQ 609 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 609 (703)
++|-++|+.+++..... ..+|+.|+.++.+...-+.|+.++.+|++..|......+-..+++++.+.|+.+++|.
T Consensus 1547 ---~~A~ell~~m~KKF~q~--~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRt 1621 (1710)
T KOG1070|consen 1547 ---DEADELLRLMLKKFGQT--RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRT 1621 (1710)
T ss_pred ---hhHHHHHHHHHHHhcch--hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHH
Confidence 99999999999998855 5799999999999999999999999999999996667888899999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-CCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6461 610 IYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC-DPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRS 688 (703)
Q Consensus 610 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 688 (703)
+|+-.|...|.-.. +|.-|++++.+.|+.+-+|.+|+|++.+. ++.....++..|.+||.++|+...++.|..+|..
T Consensus 1622 lfEgll~ayPKRtD--lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1622 LFEGLLSAYPKRTD--LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHhhCccchh--HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 99999999998655 99999999999999999999999998763 4454789999999999999999999999877776
Q ss_pred HHHHh
Q psy6461 689 VQAQY 693 (703)
Q Consensus 689 ~~~~~ 693 (703)
-..+.
T Consensus 1700 Yv~s~ 1704 (1710)
T KOG1070|consen 1700 YVESI 1704 (1710)
T ss_pred HHHHh
Confidence 44333
No 43
>KOG1258|consensus
Probab=99.79 E-value=1.5e-14 Score=146.87 Aligned_cols=443 Identities=14% Similarity=0.194 Sum_probs=271.0
Q ss_pred eccCCCchhhHHHHhcCCCChHHHHHH-------------HHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6461 11 TTENEEDLPYEEEILRNPFSVKHWLRY-------------IEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRK 76 (703)
Q Consensus 11 ~~~~~~~~~~e~~l~~~P~~~~~w~~~-------------~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~ 76 (703)
...+.......+.+...|.+...|... +..-. ..+.+.++.+|...|..+|....+|..|+.++..
T Consensus 12 ~~~~~~~~~~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~k 91 (577)
T KOG1258|consen 12 RKEDTQFSTDNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYK 91 (577)
T ss_pred hccccccCccchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHH
Confidence 333334455566666667666666553 33333 3556899999999999999999999999998765
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-ccChHHHHHHHHHHHHhCCcc-cccccHHHHHHHHHh
Q psy6461 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD-QHKITQTRHVFDRALRALPIT-QHHRVWPLYLSFVKS 154 (703)
Q Consensus 77 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~ 154 (703)
. |..+.+..+|+|++...|.+..+|+.|..+... .|+.+..+..|++|+.....+ ..+.+|..|++++..
T Consensus 92 l--------g~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~ 163 (577)
T KOG1258|consen 92 L--------GNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG 163 (577)
T ss_pred h--------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc
Confidence 4 778999999999999999999999999999877 467888999999999987742 348899999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHH----HHHHHh-----cCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHh
Q psy6461 155 HAVPETAVRVFRRYLKLFPEDAEDY----IEYLSS-----IERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMIS 225 (703)
Q Consensus 155 ~~~~~~A~~~~~~~l~~~p~~~~~~----~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~ 225 (703)
++++.....+|++.++.--.....+ .+.+.. .-..+++.+.=.....
T Consensus 164 qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~------------------------ 219 (577)
T KOG1258|consen 164 QKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAE------------------------ 219 (577)
T ss_pred cccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHh------------------------
Confidence 9999999999999998533222222 111111 0011111111000000
Q ss_pred cCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHH-HhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHH
Q psy6461 226 QNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYI-RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLN 304 (703)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~ 304 (703)
+....+.+...+.|...++--. ..+..+.+.....+.+... ..+|......+
T Consensus 220 ----------------~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~------~~~~~~s~~~~----- 272 (577)
T KOG1258|consen 220 ----------------RSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIH------EKVYQKSEEEE----- 272 (577)
T ss_pred ----------------hhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHH------HHHHHhhHhHH-----
Confidence 0000000000111111111110 1122333333333322210 11222222111
Q ss_pred HHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhc
Q psy6461 305 KRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTV 382 (703)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~ 382 (703)
.+...++..+. ||+++.. ..++.+...|..++.+.. |+...+.-.|++|+-.+
T Consensus 273 ---------------------~kr~~fE~~Ik-rpYfhvk---pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c 327 (577)
T KOG1258|consen 273 ---------------------EKRWGFEEGIK-RPYFHVK---PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC 327 (577)
T ss_pred ---------------------HHHHhhhhhcc-ccccccC---cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH
Confidence 12334444332 2333221 233446777777776543 88888888888887654
Q ss_pred CCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q psy6461 383 DPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP-YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPA 461 (703)
Q Consensus 383 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 461 (703)
. .+..+|+.|+.+.+..|+.+-|..++.++.++. |+.+ .+.+.++.+....|+++.|+.++++.....|
T Consensus 328 A------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~----~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 328 A------LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP----IIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred h------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc----HHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 2 467788888888888888888888888887773 4444 7778888888888888888888888887777
Q ss_pred CCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHH---H
Q psy6461 462 RPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARD---L 538 (703)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~---~ 538 (703)
+. ..+-..++.++.+.|++ +.+.. +
T Consensus 398 g~-----------------v~~~l~~~~~e~r~~~~-----------------------------------~~~~~~~~l 425 (577)
T KOG1258|consen 398 GL-----------------VEVVLRKINWERRKGNL-----------------------------------EDANYKNEL 425 (577)
T ss_pred ch-----------------hhhHHHHHhHHHHhcch-----------------------------------hhhhHHHHH
Confidence 64 45555666666666654 44442 2
Q ss_pred HHHHHHhCCC-cchHHHHHHHHHHHH-HcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 539 FEQCLEACPP-RYAKTLYLLYAKLEE-EHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 539 ~~~al~~~p~-~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
+.....-.-+ .....+++.++.+-. -.++.+.|+.++..+....|++ ..+|..++.++...
T Consensus 426 ~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~--k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 426 YSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC--KVLYLELIRFELIQ 488 (577)
T ss_pred HHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc--HHHHHHHHHHHHhC
Confidence 2222211111 112456677777743 3567777777777777777766 45666777776553
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.3e-18 Score=173.67 Aligned_cols=250 Identities=16% Similarity=0.212 Sum_probs=103.4
Q ss_pred cCCchhHHHHHHHHHHhc-CCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc
Q psy6461 365 DGKPLDIIRTYTEAVKTV-DPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 365 ~~~~~~a~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
.|++++|.+++.+.+... +| ..+.+|..++.+.+..++++.|+..|++++..++.++ ..+..++.+ ...
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~-----~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~----~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPP-----DDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP----QDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccc----ccccccccc-ccc
Confidence 389999999998776654 23 3568999999999999999999999999999988776 677788887 689
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHH
Q psy6461 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKF 523 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~ 523 (703)
+++++|..++.++.+..++ +..+..++.++...+++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~------------------~~~l~~~l~~~~~~~~~-------------------------- 126 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD------------------PRYLLSALQLYYRLGDY-------------------------- 126 (280)
T ss_dssp ---------------------------------------------H-HHHTT-H--------------------------
T ss_pred ccccccccccccccccccc------------------cchhhHHHHHHHHHhHH--------------------------
Confidence 9999999999998887754 56677777776666654
Q ss_pred HHHhCCCChhHHHHHHHHHHHhC--CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 524 LSRYGGTKLERARDLFEQCLEAC--PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 524 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
+++..+++++.... |.+ +.+|..+|.++.+.|+.++|+..|+++++..|++ ..+...++.+.+..
T Consensus 127 ---------~~~~~~l~~~~~~~~~~~~--~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~--~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 127 ---------DEAEELLEKLEELPAAPDS--ARFWLALAEIYEQLGDPDKALRDYRKALELDPDD--PDARNALAWLLIDM 193 (280)
T ss_dssp ---------HHHHHHHHHHHH-T---T---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTT
T ss_pred ---------HHHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHC
Confidence 77777777766544 334 5688888888888888888888888888888887 34566666677777
Q ss_pred cCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHH
Q psy6461 602 YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMRE 681 (703)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 681 (703)
|+.++++.++....+..|+++. +|..++..+...|+.++|..+|+++++..|. ++.+..+++++....|..+.|.+
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~--~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~--d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPD--LWDALAAAYLQLGRYEEALEYLEKALKLNPD--DPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCC--HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT---HHHHHHHHHHHT----------
T ss_pred CChHHHHHHHHHHHHHCcCHHH--HHHHHHHHhcccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 8888888888888888777776 7888888888888888888888888887443 48888888888888888888887
Q ss_pred HHHH
Q psy6461 682 MLRI 685 (703)
Q Consensus 682 ~~~~ 685 (703)
+.+.
T Consensus 270 ~~~~ 273 (280)
T PF13429_consen 270 LRRQ 273 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 7643
No 45
>KOG1155|consensus
Probab=99.78 E-value=2.6e-14 Score=139.37 Aligned_cols=218 Identities=20% Similarity=0.215 Sum_probs=177.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
-...|.+|.-.++.++|+..|+++++++|+.. .+|..+|.=++..++...|...|++|+.++|.|
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~----~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D----------- 397 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPKYL----SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD----------- 397 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcchh----HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-----------
Confidence 34457888889999999999999999999987 999999999999999999999999999999995
Q ss_pred HHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHH
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTL 554 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 554 (703)
.+.|+..++.++..+- +-=|.-.|++|++..|++ +.+
T Consensus 398 ------yRAWYGLGQaYeim~M-----------------------------------h~YaLyYfqkA~~~kPnD--sRl 434 (559)
T KOG1155|consen 398 ------YRAWYGLGQAYEIMKM-----------------------------------HFYALYYFQKALELKPND--SRL 434 (559)
T ss_pred ------HHHHhhhhHHHHHhcc-----------------------------------hHHHHHHHHHHHhcCCCc--hHH
Confidence 8999999998886543 256888999999999999 679
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-----CCcchHHHHHH
Q psy6461 555 YLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL-----PEEPTRQMCLK 629 (703)
Q Consensus 555 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~ 629 (703)
|..+|+++++.++.++|++-|++++.....+. ..+.-.+....+.++..+|...|++.++.. -+...+.+.+-
T Consensus 435 w~aLG~CY~kl~~~~eAiKCykrai~~~dte~--~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f 512 (559)
T KOG1155|consen 435 WVALGECYEKLNRLEEAIKCYKRAILLGDTEG--SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF 512 (559)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 99999999999999999999999998877643 344455666777889999999999999842 11113345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQA 691 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 691 (703)
++..+.+.+++++|-..-.+++.- ++ ..++++.+++-.|+.+.
T Consensus 513 LA~~f~k~~~~~~As~Ya~~~~~~-~~------------------e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 513 LAEYFKKMKDFDEASYYATLVLKG-ET------------------ECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHhhcchHHHHHHHHHHhcC-Cc------------------hHHHHHHHHHHHHHhcC
Confidence 888999999999998876666554 22 24566666666666553
No 46
>KOG2003|consensus
Probab=99.77 E-value=2.1e-15 Score=145.94 Aligned_cols=453 Identities=13% Similarity=0.062 Sum_probs=286.0
Q ss_pred hhHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHH----HHHHHHHhcCChH
Q psy6461 86 PSYEDVNNTFERSLVF--MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWP----LYLSFVKSHAVPE 159 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~----~~~~~~~~~~~~~ 159 (703)
.-+.+|...|+-.++. .|+...+-.+.+++++++.++.+|.+.|+-||...|.- +...-. .++-...+.|.++
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-nk~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-NKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-chhhHHHHHhhcCeeEEecccch
Confidence 5577899999998876 69888888899999999999999999999999999963 222222 2222234568999
Q ss_pred HHHHHHHHHHhhCCCCHHHH--HHHHHhcCCHHHHHHHHHHhhccccccccc------CCchhhhHHHHH--HHHhcCcc
Q psy6461 160 TAVRVFRRYLKLFPEDAEDY--IEYLSSIERLDEAAVKLAYIVNKESFVSKH------GKSNHQLWNELC--EMISQNPD 229 (703)
Q Consensus 160 ~A~~~~~~~l~~~p~~~~~~--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~w~~~~--~~l~~~~~ 229 (703)
.|+..|+..++..|+....+ +-.+.-.|+-++-.+.|.++++.|.++... ......+..+.+ +-++.-..
T Consensus 294 dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 294 DAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred hhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 99999999999999987654 223456788999999999999887764321 110001100000 00000000
Q ss_pred ccccccHHHHHHhHhhhhc------------------cc-h----hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcc
Q psy6461 230 KIRSLNVDAIIRGGLRRYT------------------DQ-L----GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVR 286 (703)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~------------------~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 286 (703)
.-++...+++++...-..| .+ . .++-..-+--+++.|+++.|+++++-.-+......
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 0000011122221110000 00 0 01111223445566777777766654333322111
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc
Q psy6461 287 DFT-QVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD 365 (703)
Q Consensus 287 ~~~-~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 365 (703)
..+ .-.+ .+.++.
T Consensus 454 saaa~nl~------------------------------------------------------------------~l~flq 467 (840)
T KOG2003|consen 454 SAAANNLC------------------------------------------------------------------ALRFLQ 467 (840)
T ss_pred HHHhhhhH------------------------------------------------------------------HHHHHh
Confidence 000 0000 001111
Q ss_pred --CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc
Q psy6461 366 --GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 366 --~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
.++..|...-..++.. +. -++-+..+-+.....+|++++|...|+.++..+.++. +..+..+..+...
T Consensus 468 ggk~~~~aqqyad~aln~-dr-----yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~----ealfniglt~e~~ 537 (840)
T KOG2003|consen 468 GGKDFADAQQYADIALNI-DR-----YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT----EALFNIGLTAEAL 537 (840)
T ss_pred cccchhHHHHHHHHHhcc-cc-----cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH----HHHHHhcccHHHh
Confidence 1222333333333322 11 1222334445555668899999999999998877666 7777888778888
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHH
Q psy6461 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKF 523 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~ 523 (703)
|+.++|+..|-+...+--+ +..+.+..+.+++...+
T Consensus 538 ~~ldeald~f~klh~il~n-----------------n~evl~qianiye~led--------------------------- 573 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAILLN-----------------NAEVLVQIANIYELLED--------------------------- 573 (840)
T ss_pred cCHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHhhC---------------------------
Confidence 9999999988876665544 36777777777665544
Q ss_pred HHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC
Q psy6461 524 LSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 524 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 603 (703)
+.+|.+++.++....|++ +.+...++.++.+.|+-.+|...+-.....+|.+...--|.+ .+++.-.-
T Consensus 574 --------~aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~--ayyidtqf 641 (840)
T KOG2003|consen 574 --------PAQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA--AYYIDTQF 641 (840)
T ss_pred --------HHHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH--HHHHhhHH
Confidence 378999999999999988 668889999999999999999988888888998865444443 22233335
Q ss_pred chHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCC
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN 675 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~ 675 (703)
.++|..+|+++--.-|+. +.-.+..+.++++.|++.+|..+|+..-..+|.+ .+....+.++....|.
T Consensus 642 ~ekai~y~ekaaliqp~~--~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped--ldclkflvri~~dlgl 709 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQPNQ--SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED--LDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcCccH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc--hHHHHHHHHHhccccc
Confidence 678899999988888863 2233556778888999999999998887776654 6666667777766663
No 47
>KOG1258|consensus
Probab=99.77 E-value=4.4e-14 Score=143.54 Aligned_cols=452 Identities=19% Similarity=0.261 Sum_probs=273.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcc-----cCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHH
Q psy6461 53 YERSLKELPGSYKLWYNYLKLRRKQVK-----GKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRH 127 (703)
Q Consensus 53 ~e~al~~~P~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 127 (703)
....+...|++..+|......-...-. .......+.+.++.+|...|...|.....|..++..+.+.|..+.+.+
T Consensus 21 ~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~ 100 (577)
T KOG1258|consen 21 DNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVK 100 (577)
T ss_pred cchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 345566777777777544322111100 011122445778999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHh-cCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccc
Q psy6461 128 VFDRALRALPITQHHRVWPLYLSFVKS-HAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFV 206 (703)
Q Consensus 128 ~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 206 (703)
+|+|+++..| ....+|..|+.+... .|+++..+..|++|......+-
T Consensus 101 Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF------------------------------ 148 (577)
T KOG1258|consen 101 VFERGVQAIP--LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDF------------------------------ 148 (577)
T ss_pred HHHHHHHhhh--hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccch------------------------------
Confidence 9999999999 458999999888764 4666777788888776542221
Q ss_pred cccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcc
Q psy6461 207 SKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVR 286 (703)
Q Consensus 207 ~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 286 (703)
.+.+.|..++.+...++++.....+|++.+.....
T Consensus 149 -------------------------------------------~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~-- 183 (577)
T KOG1258|consen 149 -------------------------------------------LSDPLWDKYIEFENGQKSWKRVANIYERILEIPLH-- 183 (577)
T ss_pred -------------------------------------------hccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhh--
Confidence 11367888888888888899999999998876322
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc-
Q psy6461 287 DFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD- 365 (703)
Q Consensus 287 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~- 365 (703)
.+...|..|..+.+...... +...+.+++.+.-...+..........+.|-..+.-..
T Consensus 184 ~~~~~f~~f~~~l~~~~~~~---------------------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~ 242 (577)
T KOG1258|consen 184 QLNRHFDRFKQLLNQNEEKI---------------------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTD 242 (577)
T ss_pred HhHHHHHHHHHHHhcCChhh---------------------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccC
Confidence 34566666655543311000 00111111110000000000000011111111111000
Q ss_pred --CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH----HHHHHHHHHH
Q psy6461 366 --GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL----ATVWCEWAEL 439 (703)
Q Consensus 366 --~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~ 439 (703)
+-.++......+.+. .--+++.........+..|+..++.+..++..+ -..|..|..+
T Consensus 243 ~s~~l~~~~~~l~~~~~----------------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf 306 (577)
T KOG1258|consen 243 PSKSLTEEKTILKRIVS----------------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF 306 (577)
T ss_pred ccchhhHHHHHHHHHHH----------------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh
Confidence 011111111111110 001223334455667777787777643333221 2458888888
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHH
Q psy6461 440 ELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTY 519 (703)
Q Consensus 440 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y 519 (703)
....|+++.+...|++++--+..- ..+|..|+......|..
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y-----------------~efWiky~~~m~~~~~~---------------------- 347 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALY-----------------DEFWIKYARWMESSGDV---------------------- 347 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhh-----------------HHHHHHHHHHHHHcCch----------------------
Confidence 888888888888888888776552 57777777766665543
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHH
Q psy6461 520 LTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAA 599 (703)
Q Consensus 520 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 599 (703)
+-|..++.++++..-... +.+.+.++.++...|+++.|+.++++.....|+- +.+-..++.++.
T Consensus 348 -------------~~~~~~~~~~~~i~~k~~-~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~--v~~~l~~~~~e~ 411 (577)
T KOG1258|consen 348 -------------SLANNVLARACKIHVKKT-PIIHLLEARFEESNGNFDDAKVILQRIESEYPGL--VEVVLRKINWER 411 (577)
T ss_pred -------------hHHHHHHHhhhhhcCCCC-cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch--hhhHHHHHhHHH
Confidence 667777777777643332 4678888888888888888888888888777654 455566777777
Q ss_pred HhcCchHHHH---HHHHHHHhCCCcc-hHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcC
Q psy6461 600 EIYGIPKTRQ---IYERAIESLPEEP-TRQMCLKFAEMETK-LGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 600 ~~~~~~~A~~---~~~~al~~~p~~~-~~~~~~~~a~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g 674 (703)
+.|+.+.+.. ++......--++. .....+.++++-.+ .++.+.|+.++..+.++.++ +..+|..+..|+...+
T Consensus 412 r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~--~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 412 RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPD--CKVLYLELIRFELIQP 489 (577)
T ss_pred HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc--cHHHHHHHHHHHHhCC
Confidence 7778777773 3333332211111 22356666665544 46788888888888888544 4778888888887776
Q ss_pred C
Q psy6461 675 N 675 (703)
Q Consensus 675 ~ 675 (703)
.
T Consensus 490 ~ 490 (577)
T KOG1258|consen 490 S 490 (577)
T ss_pred c
Confidence 4
No 48
>KOG1126|consensus
Probab=99.76 E-value=1.9e-16 Score=161.42 Aligned_cols=267 Identities=15% Similarity=0.172 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYA-QFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
-+...+|..|.+.+++++|..+|+.+-+..|-..+...+|.... ++.+.. .+
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v------------------------~L--- 406 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV------------------------AL--- 406 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH------------------------HH---
Confidence 34556899999999999999999988877764332222221110 011100 00
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 409 (703)
.++..-++..+|..+..|...+.++. ++.+.|+++|++|++. +| +...+|..+|.-+....+++
T Consensus 407 --------s~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-dp-----~faYayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 407 --------SYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-DP-----RFAYAYTLLGHESIATEEFD 472 (638)
T ss_pred --------HHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-CC-----ccchhhhhcCChhhhhHHHH
Confidence 01111246677888888877776653 7777888888888775 33 24455666666666777788
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHH
Q psy6461 410 DARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYAD 489 (703)
Q Consensus 410 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (703)
.|...|+.|+..+|.+. ..|+.+|.+|+++++++.|.-.|++|+.++|.+ ..+....+.
T Consensus 473 ~a~~~fr~Al~~~~rhY----nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-----------------svi~~~~g~ 531 (638)
T KOG1126|consen 473 KAMKSFRKALGVDPRHY----NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-----------------SVILCHIGR 531 (638)
T ss_pred hHHHHHHhhhcCCchhh----HHHHhhhhheeccchhhHHHHHHHhhhcCCccc-----------------hhHHhhhhH
Confidence 88888888888877775 778888888888888888888888888888774 455555556
Q ss_pred HHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChH
Q psy6461 490 LEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLAR 569 (703)
Q Consensus 490 ~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 569 (703)
++.+.|.. |+|..+|++|+..+|.+ +...+..|.++...++++
T Consensus 532 ~~~~~k~~-----------------------------------d~AL~~~~~A~~ld~kn--~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 532 IQHQLKRK-----------------------------------DKALQLYEKAIHLDPKN--PLCKYHRASILFSLGRYV 574 (638)
T ss_pred HHHHhhhh-----------------------------------hHHHHHHHHHHhcCCCC--chhHHHHHHHHHhhcchH
Confidence 66655543 77888888888888877 556777777777777888
Q ss_pred HHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 570 HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 570 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
+|...+|......|+++ .++......+.+.|+.+.|...|.=|...+|.
T Consensus 575 eal~~LEeLk~~vP~es--~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 575 EALQELEELKELVPQES--SVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHHHhCcchH--HHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 88888887777777763 34455555556666777777777666666664
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=4.3e-18 Score=169.89 Aligned_cols=263 Identities=18% Similarity=0.219 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH
Q psy6461 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDL 334 (703)
Q Consensus 255 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (703)
...++.++...|++++|.+++++.+....
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~--------------------------------------------------- 39 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIA--------------------------------------------------- 39 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc---------------------------------------------------
Confidence 34679999999999999999977665431
Q ss_pred HhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHH
Q psy6461 335 MERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDAR 412 (703)
Q Consensus 335 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 412 (703)
.|++...|..++.+.. ++.+.|+..|++.+.. ++ ..+..+..++.+ ...+++++|.
T Consensus 40 ---------------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~-----~~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 40 ---------------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DK-----ANPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------cccccccccccccccccccccccccccccccccc-cc-----cccccccccccc-cccccccccc
Confidence 1222233333333322 7888999999998875 22 245567777777 6889999999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC--CCCcccccchhhHHHHHHhhHHHHHHHHHH
Q psy6461 413 LIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP--ARPVAYHDEAETVQARVYKSIKLWSLYADL 490 (703)
Q Consensus 413 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (703)
.+++++.+..+ ++ ..+..++.++.+.++++++..+++++.... +. ++.+|..++.+
T Consensus 98 ~~~~~~~~~~~-~~----~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------~~~~~~~~a~~ 155 (280)
T PF13429_consen 98 KLAEKAYERDG-DP----RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-----------------SARFWLALAEI 155 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T------------------HHHHHHHHHH
T ss_pred ccccccccccc-cc----chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-----------------CHHHHHHHHHH
Confidence 99999988754 44 677888888899999999999999977544 33 48899999999
Q ss_pred HHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHH
Q psy6461 491 EESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARH 570 (703)
Q Consensus 491 ~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 570 (703)
+...|+. ++|+..|+++++.+|++ +.++..++.++...|+.++
T Consensus 156 ~~~~G~~-----------------------------------~~A~~~~~~al~~~P~~--~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 156 YEQLGDP-----------------------------------DKALRDYRKALELDPDD--PDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp HHHCCHH-----------------------------------HHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHH
T ss_pred HHHcCCH-----------------------------------HHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCChHH
Confidence 9888775 99999999999999998 6789999999999999999
Q ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 571 AMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 571 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
++.+++...+..|.++ .+|..+...+...|+.++|...|+++++..|+++. +...||+++...|+.++|..+++++
T Consensus 199 ~~~~l~~~~~~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~--~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 199 AREALKRLLKAAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL--WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHH-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH--HHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHCcCHH--HHHHHHHHHhccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999998888876663 46778888888899999999999999999999887 8899999999999999999999998
Q ss_pred hcc
Q psy6461 651 SQI 653 (703)
Q Consensus 651 ~~~ 653 (703)
.+.
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 764
No 50
>KOG1127|consensus
Probab=99.74 E-value=3.9e-14 Score=149.79 Aligned_cols=510 Identities=12% Similarity=0.058 Sum_probs=334.5
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..|=++++.+|.-..+|.-++.+++ ..+..+|+..|.+|.+.+|.+...|...+....+. .+++.|..+.-
T Consensus 479 ~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~--------~~we~a~~I~l 550 (1238)
T KOG1127|consen 479 HALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE--------STWEEAFEICL 550 (1238)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc--------ccHHHHHHHHH
Confidence 5677889999999999999999999 66999999999999999999999999988876553 67888888866
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q psy6461 97 RSLVFMHK--MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174 (703)
Q Consensus 97 ~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 174 (703)
++-+..|. ....|...|-.+.+.++...|...|+.||+.+| .+...|..+++.|.+.|++..|+++|.++..++|.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP--kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP--KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc--hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 66555553 336777888888999999999999999999999 56899999999999999999999999999999999
Q ss_pred CHHHH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccch
Q psy6461 175 DAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQL 251 (703)
Q Consensus 175 ~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (703)
+...- .-+....|.|++|...++.++..-. .|.. +....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s-----------~e~~---------------------------~q~gL 670 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFS-----------LERT---------------------------GQNGL 670 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----------HHHH---------------------------hhhhH
Confidence 87532 1233578999999999988763100 0000 00012
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
.+.....+..+..+|=..+|...++++++.+...-.- .+ .-..+........+.
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h-~~--~~~~~~Wi~asdac~----------------------- 724 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH-SL--QSDRLQWIVASDACY----------------------- 724 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-hh--hhhHHHHHHHhHHHH-----------------------
Confidence 3455666666666676777777777777643210000 00 000000000000000
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHH---hhhc---CC-c---hhHHHHHHHHHHhcCCCccCCchhHHHHHHHHH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRV---RLFD---GK-P---LDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKF 401 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~---~~~~---~~-~---~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 401 (703)
.+.. ++ |+-+.....-+ ++.. +. . ..+.+.+-..+.... .+..|.++|.-
T Consensus 725 ---------~f~q--~e--~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-------~~~~WyNLGin 784 (1238)
T KOG1127|consen 725 ---------IFSQ--EE--PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-------HMYPWYNLGIN 784 (1238)
T ss_pred ---------HHHH--hc--ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-------ccchHHHHhHH
Confidence 0000 01 11111110000 0000 11 1 123333333333211 13356666655
Q ss_pred HHH--------cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 402 YEV--------NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 402 ~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
|.+ +.+...|+..+.++++.+.++. ..|+.++.+ ...|++.-|...|-+++...|.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~----~~WnaLGVl-sg~gnva~aQHCfIks~~sep~----------- 848 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNE----GLWNALGVL-SGIGNVACAQHCFIKSRFSEPT----------- 848 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccH----HHHHHHHHh-hccchhhhhhhhhhhhhhcccc-----------
Confidence 443 3344688999999999988876 899999987 5678999999999999999998
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
+...|..++-+.....++ +.|...|.++..++|.+ ..
T Consensus 849 ------~~~~W~NlgvL~l~n~d~-----------------------------------E~A~~af~~~qSLdP~n--l~ 885 (1238)
T KOG1127|consen 849 ------CHCQWLNLGVLVLENQDF-----------------------------------EHAEPAFSSVQSLDPLN--LV 885 (1238)
T ss_pred ------chhheeccceeEEecccH-----------------------------------HHhhHHHHhhhhcCchh--hH
Confidence 478888887766655544 78888888888888888 45
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH--hhccCcc-hHHHHHHHHHHHHHHhcC----------chHHHHHHHHHHHhCCC
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERA--TGAVLPE-EMFEMFNIYIKKAAEIYG----------IPKTRQIYERAIESLPE 620 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~a--l~~~p~~-~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~ 620 (703)
.|+..+.+-...|+.-++..+|.-. +...... ..+..|..-...-..+|+ ...|--..++-+...|+
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~ 965 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ 965 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc
Confidence 7888888888888888888887653 3222211 123444433333333333 33444455566666777
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc----CCCCChHhHHHHHHHHHHcCCHHHHHHH
Q psy6461 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC----DPRVTAGFWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 621 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 682 (703)
... .+...+......+.+..|...+.|.+.+. +.+.....-..+.+++...|+++.|...
T Consensus 966 ~~f--Ay~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 966 LCF--AYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 544 55555666667777777777777765432 2222344566677777777777766544
No 51
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.73 E-value=2e-14 Score=139.23 Aligned_cols=446 Identities=17% Similarity=0.204 Sum_probs=278.9
Q ss_pred CCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCC-chhHHHH
Q psy6461 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVIT-DPSYEDV 91 (703)
Q Consensus 14 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~A 91 (703)
++.+..||....-+|--..+|..++..+. .+++.....+|-++|..- .+.++|..|+.+........... .-.+-+|
T Consensus 59 ~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~a 137 (660)
T COG5107 59 DAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEA 137 (660)
T ss_pred HHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHH
Confidence 45567788888889999999999999888 899999999999999764 45999999998865431111100 0112233
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh---------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 92 NNTFERSLVFMHKMPRIWLDYGRFLMD---------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 92 ~~~~~~al~~~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
.+.--.+.-+.|.+...|..|+.++.. +.++|..|+.|.|||+ .|..+...+|..|-.|+.+.++. .|+
T Consensus 138 yefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~-tP~~nleklW~dy~~fE~e~N~~-Tar 215 (660)
T COG5107 138 YEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ-TPMGNLEKLWKDYENFELELNKI-TAR 215 (660)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc-CccccHHHHHHHHHHHHHHHHHH-HHH
Confidence 333333444679999999999998744 5689999999999999 88777899999999998776543 333
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccc--------c---ccccCCchhhhHHHHHHHHhcCcccc
Q psy6461 163 RVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKES--------F---VSKHGKSNHQLWNELCEMISQNPDKI 231 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~---~~~~~~~~~~~w~~~~~~l~~~~~~~ 231 (703)
+..-. . ..-|-.|++.++++.+.-. + ..+..+.+..-|..++++...+|-..
T Consensus 216 Kfvge-------~----------sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L 278 (660)
T COG5107 216 KFVGE-------T----------SPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKL 278 (660)
T ss_pred HHhcc-------c----------CHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCccc
Confidence 32111 1 1112233334433332100 0 01122233344555555555555433
Q ss_pred ccccHHH----HHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHH
Q psy6461 232 RSLNVDA----IIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRM 307 (703)
Q Consensus 232 ~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 307 (703)
.+..... +.+.++..++ -..++|+.+......-++-++|....++++
T Consensus 279 ~~~~~~qRi~y~~~q~~~y~~-~~~evw~dys~Y~~~isd~q~al~tv~rg~---------------------------- 329 (660)
T COG5107 279 GGRPHEQRIHYIHNQILDYFY-YAEEVWFDYSEYLIGISDKQKALKTVERGI---------------------------- 329 (660)
T ss_pred CCCcHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhccHHHHHHHHHHhcc----------------------------
Confidence 2211111 1111111111 112334444443344444444444433333
Q ss_pred HHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCC
Q psy6461 308 EEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPK 385 (703)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~ 385 (703)
|.++.+-+.+.+.++ ++.+.+..+|+++++.+.
T Consensus 330 -------------------------------------------~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~-- 364 (660)
T COG5107 330 -------------------------------------------EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLK-- 364 (660)
T ss_pred -------------------------------------------cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHH--
Confidence 333334444444433 566777888988877631
Q ss_pred ccCCchhHHHHHHHHHH--HH---cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 386 LAVGKLHTLWIEFGKFY--EV---NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 386 ~~~~~~~~~~~~~a~~~--~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
..|.... .. -|+++...+++-+-.. . +..+|+.+.....+....+.|+.+|.++.+..
T Consensus 365 ----------r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k----~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~ 427 (660)
T COG5107 365 ----------RKYSMGESESASKVDNNFEYSKELLLKRIN---K----LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG 427 (660)
T ss_pred ----------HHHhhhhhhhhccccCCccccHHHHHHHHh---h----hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 2222221 11 2334333333222111 1 12678888888888889999999999988765
Q ss_pred CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy6461 461 ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE 540 (703)
Q Consensus 461 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~ 540 (703)
-- ++.++...+-++. +..++..-|-.+|+
T Consensus 428 ~~-----------------~h~vyi~~A~~E~----------------------------------~~~~d~~ta~~ife 456 (660)
T COG5107 428 IV-----------------GHHVYIYCAFIEY----------------------------------YATGDRATAYNIFE 456 (660)
T ss_pred CC-----------------CcceeeeHHHHHH----------------------------------HhcCCcchHHHHHH
Confidence 11 1344433332222 12355688999999
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 541 QCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 541 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
-++...|++ +..-..|-.++...++-+.|+.+|++++....+...-.+|..++.++.+-|++..+..+-++..+..|.
T Consensus 457 lGl~~f~d~--~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 457 LGLLKFPDS--TLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCCCc--hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 999999998 556678888899999999999999999887766554579999999999999999999999999999996
Q ss_pred cch
Q psy6461 621 EPT 623 (703)
Q Consensus 621 ~~~ 623 (703)
...
T Consensus 535 en~ 537 (660)
T COG5107 535 ENL 537 (660)
T ss_pred HhH
Confidence 544
No 52
>KOG1126|consensus
Probab=99.72 E-value=2.6e-15 Score=153.32 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIY 611 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 611 (703)
+|.|...|.+|+..+|.+ ..+|..+|-++.+.++++.|.--|++|+.++|.+. .+...+..++.+.|..|+|..+|
T Consensus 471 ~d~a~~~fr~Al~~~~rh--YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--vi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRH--YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--VILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HHhHHHHHHhhhcCCchh--hHHHHhhhhheeccchhhHHHHHHHhhhcCCccch--hHHhhhhHHHHHhhhhhHHHHHH
Confidence 366666666666666665 34666666666666666666666666666666552 34444445555556666666666
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 612 ERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIK 686 (703)
Q Consensus 612 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 686 (703)
++|+..+|.++. --+..+.++...|++++|...++...++.|.+ ..++..+..+++..|..+.|.+=+..|
T Consensus 547 ~~A~~ld~kn~l--~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e--s~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 547 EKAIHLDPKNPL--CKYHRASILFSLGRYVEALQELEELKELVPQE--SSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHhcCCCCch--hHHHHHHHHHhhcchHHHHHHHHHHHHhCcch--HHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 666666666554 33444555556666666666666655554433 555556666666666655555444333
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=3.6e-14 Score=149.09 Aligned_cols=294 Identities=10% Similarity=0.004 Sum_probs=223.7
Q ss_pred HhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH
Q psy6461 361 VRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE 440 (703)
Q Consensus 361 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 440 (703)
+.+..|++..|.+...++.+.. | .....++..|......|+++.|...|+++.+..|.+. ..+...++.++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~-~-----~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~---l~~~~~~a~l~ 163 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA-A-----EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN---ILVEIARTRIL 163 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC-C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---hHHHHHHHHHH
Confidence 3344599999999999887752 3 2334566678888899999999999999998877763 13566679999
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcC-CCCchH--
Q psy6461 441 LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALF-KWPYIF-- 513 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~-~~~~~~-- 513 (703)
++.|+++.|+..+++.++..|++ +.++..++.++...|++ ..+++..+.. .++...
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~-----------------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRH-----------------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999985 78899999999999998 3333333331 222222
Q ss_pred ---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC----cchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 514 ---DIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP----RYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 514 ---~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
..|..++.. +..++..+.+.++.+..|. + +.++..++..+...|++++|.++++++++..|++.
T Consensus 227 l~~~a~~~~l~~-------~~~~~~~~~L~~~~~~~p~~~~~~--~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 227 LEQKAEIGLLDE-------AMADEGIDGLLNWWKNQPRHRRHN--IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHHHHHHHHHH-------HHHhcCHHHHHHHHHHCCHHHhCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 334333321 1124455688888888884 4 67999999999999999999999999999999875
Q ss_pred HHH--HHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH--HhcccCCCCChHh
Q psy6461 587 MFE--MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAH--CSQICDPRVTAGF 662 (703)
Q Consensus 587 ~~~--~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~--a~~~~~~~~~~~~ 662 (703)
... .+..++.. ..++.+.++..++++++..|+++...+...+++++.+.|++++|+..|++ +++. .|+ ...
T Consensus 298 ~~~~~~l~~~~~l--~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~--~~~ 372 (409)
T TIGR00540 298 AISLPLCLPIPRL--KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLD--AND 372 (409)
T ss_pred cchhHHHHHhhhc--CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCC--HHH
Confidence 322 33333332 24677889999999999999998222888999999999999999999995 5555 454 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q psy6461 663 WAAWKSFEITHGNEDTMREMLRIKRSVQAQYN 694 (703)
Q Consensus 663 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 694 (703)
+.+++.+..+.|+.++|.++++++..+..+.+
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~ 404 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQ 404 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 67999999999999999999988877554443
No 54
>KOG1173|consensus
Probab=99.70 E-value=6e-13 Score=133.36 Aligned_cols=473 Identities=14% Similarity=0.107 Sum_probs=288.0
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKE--LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
+.+....+.+-.. +.++.-|.-+-+|.... +|.|. .|+.=.-+. .++++.|.-+..+- +..-.+.
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~-~~~aq~l~~----------~~~y~ra~~lit~~-~le~~d~ 82 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI-YWLAQVLYL----------GRQYERAAHLITTY-KLEKRDI 82 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH-HHHHHHHHh----------hhHHHHHHHHHHHh-hhhhhhH
Confidence 4444455555444 66777777777776543 34332 333222111 14455444333322 3344566
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHH------HHhCCcc-----------------cccccHHHHHHHHHhcCChHHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRA------LRALPIT-----------------QHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~a------l~~~p~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
.....++.++....+.++|..+..++ +...|.+ ....+...-+.++....+.++|+.
T Consensus 83 ~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 83 ACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHH
Confidence 66677777777777777777777633 1111211 011222333556666677789999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHh-cCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHH--h-cCccccccccHHHH
Q psy6461 164 VFRRYLKLFPEDAEDYIEYLSS-IERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMI--S-QNPDKIRSLNVDAI 239 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l--~-~~~~~~~~~~~~~~ 239 (703)
.|+.++..++...+++..+... .-...+-..++... + +. .......+.-..+-++. + .+.........+.+
T Consensus 163 ~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l---~-~a-~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl 237 (611)
T KOG1173|consen 163 KYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESL---D-LA-MLTKEDVERLEILYELKLCKNRNEESLTRNEDESL 237 (611)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcc---c-HH-hhhhhHHHHHHHHHHhhhhhhccccccccCchhhh
Confidence 9999999998887755433210 00000111111100 0 00 00000000000000000 0 00000000000000
Q ss_pred HHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCc
Q psy6461 240 IRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEE 319 (703)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 319 (703)
.. . ....++....++-+...+++.++.++.+..+..+|.......+..+ ..++.+-
T Consensus 238 ~~-----l-~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~----------------- 293 (611)
T KOG1173|consen 238 IG-----L-AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGK----------------- 293 (611)
T ss_pred hh-----h-hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcc-----------------
Confidence 00 0 1235677788889999999999999999999998865544333332 1112111
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHH
Q psy6461 320 DDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIE 397 (703)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 397 (703)
.+.-+ ++.--+++..|+.+..|+..+-.+. |+..+|+..|.++... +| .....|+.
T Consensus 294 ~n~Lf----------------~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l-D~-----~fgpaWl~ 351 (611)
T KOG1173|consen 294 SNKLF----------------LLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL-DP-----TFGPAWLA 351 (611)
T ss_pred cchHH----------------HHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc-Cc-----cccHHHHH
Confidence 00000 1111247889999999998876443 9999999999998775 33 45678999
Q ss_pred HHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHH
Q psy6461 398 FGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARV 477 (703)
Q Consensus 398 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 477 (703)
+|..+...|+.+.|...|..|-+..|.+- ...+-+|.-+.+.++.+-|.+.|.+|..++|.+
T Consensus 352 fghsfa~e~EhdQAmaaY~tAarl~~G~h----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D-------------- 413 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAARLMPGCH----LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD-------------- 413 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHHHhccCCc----chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc--------------
Confidence 99999999999999999999999988764 444445555677999999999999999999986
Q ss_pred HhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc-----hH
Q psy6461 478 YKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY-----AK 552 (703)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~ 552 (703)
+-+....+-+.... +.+.+|...|+.++...+... -.
T Consensus 414 ---plv~~Elgvvay~~-----------------------------------~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 414 ---PLVLHELGVVAYTY-----------------------------------EEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred ---chhhhhhhheeehH-----------------------------------hhhHHHHHHHHHHHHHhhhccccccchh
Confidence 55555544333222 234888888888885433221 02
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
.++.++|+.+.+.+.+++|+..|++++...|++.....-.+|+.. ..|+++.|.+.|.++|.+.|++..
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~--llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH--LLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH--HhcChHHHHHHHHHHHhcCCccHH
Confidence 478999999999999999999999999999998655444455544 478999999999999999998854
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=5.3e-14 Score=147.80 Aligned_cols=134 Identities=14% Similarity=0.056 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+.++..++..+...|++++|..+++++++..|++.......+..++ .+..++.+.+++.++++++..|++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~--~l~~~~~~~~~~~~e~~lk~~p~~------- 332 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP--RLKPEDNEKLEKLIEKQAKNVDDK------- 332 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh--hcCCCChHHHHHHHHHHHHhCCCC-------
Confidence 56788888888888999999999999999888877511000222222 223466777888888888888774
Q ss_pred hhHHHHHHhhH--HHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhC
Q psy6461 471 ETVQARVYKSI--KLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE--QCLEAC 546 (703)
Q Consensus 471 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~--~al~~~ 546 (703)
+ .+...++.++.+.|++ ++|++.|+ ++++..
T Consensus 333 ----------~~~~ll~sLg~l~~~~~~~-----------------------------------~~A~~~le~a~a~~~~ 367 (409)
T TIGR00540 333 ----------PKCCINRALGQLLMKHGEF-----------------------------------IEAADAFKNVAACKEQ 367 (409)
T ss_pred ----------hhHHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHhHHhhcC
Confidence 5 6666777777666554 77888888 566677
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q psy6461 547 PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA 581 (703)
Q Consensus 547 p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 581 (703)
|++ ..+..++.++.+.|+.++|..+|++++..
T Consensus 368 p~~---~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 368 LDA---NDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 765 34567788888888888888888877543
No 56
>KOG1156|consensus
Probab=99.68 E-value=8.9e-12 Score=126.98 Aligned_cols=480 Identities=14% Similarity=0.105 Sum_probs=294.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
.+++.......+..++..|+++...-+.|..+...|+.++|-.....+++.+| .++.-|..++-++....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999998 4588899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHH---HhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHH
Q psy6461 165 FRRYLKLFPEDAEDYIEYL---SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIR 241 (703)
Q Consensus 165 ~~~~l~~~p~~~~~~~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 241 (703)
|+.|+...|+|.+.|-.+. +..++++.....-... ++.+|.
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~L------------------------Lql~~~------------ 141 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQL------------------------LQLRPS------------ 141 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHH------------------------HHhhhh------------
Confidence 9999999999998775432 4455555433222221 112221
Q ss_pred hHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc---CCcccHHHHHHHHHH-HHHHHHHHHHHHhhhCCCCC
Q psy6461 242 GGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV---TTVRDFTQVFDAYAQ-FEELSLNKRMEEIAENDTPS 317 (703)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~-~e~~~~~~~~~~~~~~~~~~ 317 (703)
....|..++..+.-.|++..|..+.+...+.. |...++. .... +.+...
T Consensus 142 ---------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e----~se~~Ly~n~i-------------- 194 (700)
T KOG1156|consen 142 ---------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE----HSELLLYQNQI-------------- 194 (700)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH----HHHHHHHHHHH--------------
Confidence 23579999999999999999999888776654 2222110 0000 000000
Q ss_pred CcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHH
Q psy6461 318 EEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIE 397 (703)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 397 (703)
..+ .|..+.|.+-...- .+... +...+-..
T Consensus 195 ----------------------------~~E----------------~g~~q~ale~L~~~----e~~i~--Dkla~~e~ 224 (700)
T KOG1156|consen 195 ----------------------------LIE----------------AGSLQKALEHLLDN----EKQIV--DKLAFEET 224 (700)
T ss_pred ----------------------------HHH----------------cccHHHHHHHHHhh----hhHHH--HHHHHhhh
Confidence 000 02222222221110 00000 01112234
Q ss_pred HHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 398 FGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAAL-RLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 398 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
-+.++...+++++|..+|...+..+|++. .-+..+-..+..-.+.-++. .+|...-+..|...-..+-...+-.+
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~----~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNL----DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG 300 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhH----HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc
Confidence 46777788888999999999888888886 44444444443322333333 56666555444421000000000000
Q ss_pred HHhhHHHHHHHHHHHHhcCCh----------------hHHHhHhhcC----------C-------CCchHHHHHHHHHHH
Q psy6461 477 VYKSIKLWSLYADLEESFGTF----------------KAYEKGIALF----------K-------WPYIFDIWNTYLTKF 523 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~----------------~~~e~al~~~----------~-------~~~~~~~~~~y~~~~ 523 (703)
..-......|..-..+.|-. .+.++.+..+ . .++...+|..|.. .
T Consensus 301 -eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l-a 378 (700)
T KOG1156|consen 301 -EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL-A 378 (700)
T ss_pred -chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH-H
Confidence 00011112222222222111 2334443311 1 2567778988873 2
Q ss_pred HHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC
Q psy6461 524 LSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 524 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 603 (703)
......|.++.|...++.|+...|+- ++.|+.-|++....|++++|...++.+.+.+-.| .-+-..++.+..+...
T Consensus 379 qh~D~~g~~~~A~~yId~AIdHTPTl--iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD--R~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDHTPTL--IELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD--RAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhccCchH--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh--HHHHHHHHHHHHHccc
Confidence 22224678999999999999999998 7899999999999999999999999999987665 3344456666677778
Q ss_pred chHHHHHHHHHHHhCCCcch-----HH-HHHHH--HHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCC
Q psy6461 604 IPKTRQIYERAIESLPEEPT-----RQ-MCLKF--AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN 675 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~-----~~-~~~~~--a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~ 675 (703)
.++|.++..+--...- +.. .+ +|... |..+.++|++-.|.+-+-..-++.. + -..-=-.+-.++...|+
T Consensus 455 i~eA~~~~skFTr~~~-~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~-~-~~~dqfDfhtyc~rk~t 531 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGF-GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK-T-WSEDQFDFHTYCMRKGT 531 (700)
T ss_pred cHHHHHHHHHhhhccc-chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH-H-HhhhhhhHHHHHHhcCc
Confidence 8888877654433221 110 00 45433 4455667777666554433222210 0 00011135577888899
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6461 676 EDTMREMLRIKRSVQAQ 692 (703)
Q Consensus 676 ~~~~~~~~~~~~~~~~~ 692 (703)
+..+.++++-.-.|..+
T Consensus 532 lrsYv~ll~~~d~L~~~ 548 (700)
T KOG1156|consen 532 LRSYVELLEWEDNLRSS 548 (700)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 99999998766665533
No 57
>KOG0548|consensus
Probab=99.68 E-value=1.3e-13 Score=137.52 Aligned_cols=462 Identities=12% Similarity=0.042 Sum_probs=267.9
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 83 ITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
...|+++.|...|-.|+.++|.|.-++.+-...+.+.|++++|.+--.+..+..| ..+..|...+--....|++++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p--~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP--DWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC--chhhHHHHhHHHHHhcccHHHHH
Confidence 3469999999999999999999999999999999999999999999999999999 57888888888888899999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhccccccc-------ccCCchhhhHHHHHHHHhcCcccccccc
Q psy6461 163 RVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVS-------KHGKSNHQLWNELCEMISQNPDKIRSLN 235 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~w~~~~~~l~~~~~~~~~~~ 235 (703)
..|.++|+.+|++...+.++.... ..+.+. ......+.|.. .........+......+..+|..+..--
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~~---~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAY-LEDYAA---DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhh-hHHHHh---hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999999999987665544222 111010 11111111100 0011112223333444444444332100
Q ss_pred HHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc--CCcccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy6461 236 VDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV--TTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313 (703)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 313 (703)
.+ +.+...++.+.. .+.. ..+....... +..+. ....
T Consensus 167 ~d--------------~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~----------------------~~~~ 205 (539)
T KOG0548|consen 167 ND--------------PRLMKADGQLKG-VDEL----LFYASGIEILASMAEPC----------------------KQEH 205 (539)
T ss_pred cc--------------HHHHHHHHHHhc-Cccc----cccccccccCCCCCCcc----------------------cccC
Confidence 00 011111111110 0000 0010101000 00000 0000
Q ss_pred CCCCCc-chHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchh
Q psy6461 314 DTPSEE-DDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLH 392 (703)
Q Consensus 314 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 392 (703)
.+.... ...+..+ ...... + ..-+..+..-..++..+++.|..++... . ..
T Consensus 206 ~~~~~~~d~~ee~~---~k~~a~---------------~---ek~lgnaaykkk~f~~a~q~y~~a~el~-~------~i 257 (539)
T KOG0548|consen 206 NGFPIIEDNTEERR---VKEKAH---------------K---EKELGNAAYKKKDFETAIQHYAKALELA-T------DI 257 (539)
T ss_pred CCCCccchhHHHHH---HHHhhh---------------H---HHHHHHHHHHhhhHHHHHHHHHHHHhHh-h------hh
Confidence 000000 0000000 000000 0 0000000011156677888888888763 2 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHH---HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC---EWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
..+.+.+..|...|.+.+++...+++++........+..+-. .++..+...++++.|+..|.+++.....
T Consensus 258 t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt------- 330 (539)
T KOG0548|consen 258 TYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT------- 330 (539)
T ss_pred HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-------
Confidence 567888899999999999999999888875433322212222 2333556678899999999998876543
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
+++....-..+...+.. ++. .+-.|. .-..-=.....-+..+++..|...|.++++.+|++
T Consensus 331 -----------~~~ls~lk~~Ek~~k~~---e~~--a~~~pe---~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 331 -----------PDLLSKLKEAEKALKEA---ERK--AYINPE---KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred -----------HHHHHHHHHHHHHHHHH---HHH--HhhChh---HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 23333332222222111 000 000000 00000000112224678999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK 629 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (703)
..+|.+-|-++.+.|.+..|++-.+.+++.+|+.....+..+-+... .+++++|.+.|+.+++.+|++.. +.-.
T Consensus 392 --a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~--mk~ydkAleay~eale~dp~~~e--~~~~ 465 (539)
T KOG0548|consen 392 --ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA--MKEYDKALEAYQEALELDPSNAE--AIDG 465 (539)
T ss_pred --hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCchhHH--HHHH
Confidence 67999999999999999999999999999999876555555444444 45999999999999999998765 5555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHh
Q psy6461 630 FAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
|.++...+........++++++
T Consensus 466 ~~rc~~a~~~~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 466 YRRCVEAQRGDETPEETKRRAM 487 (539)
T ss_pred HHHHHHHhhcCCCHHHHHHhhc
Confidence 5555544332333445555543
No 58
>KOG1173|consensus
Probab=99.67 E-value=4.2e-14 Score=141.43 Aligned_cols=278 Identities=12% Similarity=0.085 Sum_probs=199.6
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
+.+.....++..- .+++.+-.++++..++.+|-+.+.....+..+.+. |+..+-.-+-.+.+...|+++-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el--------~~~n~Lf~lsh~LV~~yP~~a~s 314 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYEL--------GKSNKLFLLSHKLVDLYPSKALS 314 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh--------cccchHHHHHHHHHHhCCCCCcc
Confidence 4455555555555 78899999999999999998887776666555442 55555666667788888999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCC
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIER 188 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 188 (703)
|+..|..+...|++++||+.|.++...+| .....|..++..+.-.|+.++|...|..|-+..|+...
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~--~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl----------- 381 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDP--TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL----------- 381 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCc--cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-----------
Confidence 99999999999999999999999999888 56888999999888888889999999888888777631
Q ss_pred HHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCch
Q psy6461 189 LDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLF 268 (703)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (703)
...-+|.-|.+.+.+
T Consensus 382 -----------------------------------------------------------------P~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 382 -----------------------------------------------------------------PSLYLGMEYMRTNNL 396 (611)
T ss_pred -----------------------------------------------------------------hHHHHHHHHHHhccH
Confidence 233344445555666
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy6461 269 ERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLR 348 (703)
Q Consensus 269 ~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (703)
+.|...|.+++...|.++- ..-..+...|
T Consensus 397 kLAe~Ff~~A~ai~P~Dpl-v~~Elgvvay-------------------------------------------------- 425 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPL-VLHELGVVAY-------------------------------------------------- 425 (611)
T ss_pred HHHHHHHHHHHhcCCCcch-hhhhhhheee--------------------------------------------------
Confidence 6666666666665554320 0000000000
Q ss_pred cCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCcc-CCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcc
Q psy6461 349 QNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLA-VGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVE 427 (703)
Q Consensus 349 ~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 427 (703)
-.+.+.+|...|+.++...+.... ......+|.++|..+.+.+.+++|+..|+++|...|.++
T Consensus 426 ---------------~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~- 489 (611)
T KOG1173|consen 426 ---------------TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA- 489 (611)
T ss_pred ---------------hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch-
Confidence 002334444444444422111110 012345789999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 428 DLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
..+...|-++...|+++.|.+.|.+++.+.|++
T Consensus 490 ---~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 490 ---STHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred ---hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 889999999999999999999999999999986
No 59
>KOG4162|consensus
Probab=99.66 E-value=6e-13 Score=138.00 Aligned_cols=207 Identities=11% Similarity=0.057 Sum_probs=147.4
Q ss_pred CCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhc--C
Q psy6461 27 NPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFM--H 103 (703)
Q Consensus 27 ~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p 103 (703)
.-++...|-.+.-... -|+++.+.+.||+++.-.-...+.|..++-..... |.-..|..+.+..+... |
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa--------g~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA--------GSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh--------ccchHHHHHHHhhcccccCC
Confidence 3456677776665555 79999999999999988888889998887665432 56677999999999887 8
Q ss_pred CCHHHHHHHHHHHHh-ccChHHHHHHHHHHHHhCCc---ccccccHHHHHHHHHh----cCC-------hHHHHHHHHHH
Q psy6461 104 KMPRIWLDYGRFLMD-QHKITQTRHVFDRALRALPI---TQHHRVWPLYLSFVKS----HAV-------PETAVRVFRRY 168 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~----~~~-------~~~A~~~~~~~ 168 (703)
.++........++.. .+.++++...-.+++..... .-.+..+...+-.|.. ... ..++++.++++
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 888888877777655 57888888888888873211 0112223333222211 111 15688999999
Q ss_pred HhhCCCCHHHHH--HH-HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhh
Q psy6461 169 LKLFPEDAEDYI--EY-LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLR 245 (703)
Q Consensus 169 l~~~p~~~~~~~--~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (703)
++.+|.++.+.. .+ +...++.+.|.....+++..
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l------------------------------------------- 507 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL------------------------------------------- 507 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-------------------------------------------
Confidence 999999987433 32 35677788887777766531
Q ss_pred hhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCc
Q psy6461 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTV 285 (703)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 285 (703)
.++.....|..++.+....+++..|..+.+.++...+++
T Consensus 508 -~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 508 -NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred -cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 112335789999999999999999999999999887753
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=2.8e-13 Score=141.47 Aligned_cols=223 Identities=10% Similarity=0.045 Sum_probs=146.2
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHH----HHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLA----TVWCEWAELEL 441 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~~~ 441 (703)
|+++.|...+++..+.. | +++.+...++..|...|++++|..++.++.+..+.++.+.. ..|..+.....
T Consensus 167 g~~~~Al~~l~~~~~~~-P-----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 167 NENHAARHGVDKLLEVA-P-----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred CCHHHHHHHHHHHHhcC-C-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555444431 2 23445566666777777777888777777766554442222 12222222222
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHH
Q psy6461 442 RAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLT 521 (703)
Q Consensus 442 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~ 521 (703)
...+.+...+++++.....|+ ++.++..++..+...|+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~-----------------~~~~~~~~A~~l~~~g~~------------------------ 279 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRH-----------------QVALQVAMAEHLIECDDH------------------------ 279 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhC-----------------CHHHHHHHHHHHHHCCCH------------------------
Confidence 333344444444443333343 366777777777666654
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 522 KFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 522 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
++|...++++++..| + +.+...++.+ ..|+++++.+..++.++..|++ ..+...+...+.+.
T Consensus 280 -----------~~A~~~L~~~l~~~~-~--~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~--~~l~l~lgrl~~~~ 341 (398)
T PRK10747 280 -----------DTAQQIILDGLKRQY-D--ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDT--PLLWSTLGQLLMKH 341 (398)
T ss_pred -----------HHHHHHHHHHHhcCC-C--HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHC
Confidence 888888888888544 3 3556666655 3488888888888888888887 45666777777788
Q ss_pred cCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 602 YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
+++++|+..|+++++..|++. .+..++.++.+.|+.++|..+|++++...++
T Consensus 342 ~~~~~A~~~le~al~~~P~~~---~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAY---DYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 888889999999988888753 4678889999999999999999999887543
No 61
>KOG1070|consensus
Probab=99.66 E-value=1.9e-14 Score=156.82 Aligned_cols=248 Identities=19% Similarity=0.280 Sum_probs=211.0
Q ss_pred hhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC
Q psy6461 346 LLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY 423 (703)
Q Consensus 346 ~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 423 (703)
.+.-+|+....|+.|+.+. .++.+.|+++.++|+.++.+... .....+|+.|..++..-|.-+...++|+||.+.+.
T Consensus 1450 lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe-eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd 1528 (1710)
T KOG1070|consen 1450 LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE-EEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD 1528 (1710)
T ss_pred HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh-HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc
Confidence 3788999999999999754 38899999999999998755432 23467999999999999999999999999998742
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhH
Q psy6461 424 TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKG 503 (703)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 503 (703)
. ..++..+..+|...+++++|.++|+..++.+.. ...+|..|++++.++.+-
T Consensus 1529 ~-----~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-----------------~~~vW~~y~~fLl~~ne~------ 1580 (1710)
T KOG1070|consen 1529 A-----YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-----------------TRKVWIMYADFLLRQNEA------ 1580 (1710)
T ss_pred h-----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-----------------hhhHHHHHHHHHhcccHH------
Confidence 2 278999999999999999999999999998874 378999999988876543
Q ss_pred hhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q psy6461 504 IALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL 583 (703)
Q Consensus 504 l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 583 (703)
+.|+.++.+|++..|..--..+...+|+++.+.|+.++++.+|+-.+...|
T Consensus 1581 -----------------------------~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP 1631 (1710)
T KOG1070|consen 1581 -----------------------------EAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP 1631 (1710)
T ss_pred -----------------------------HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc
Confidence 889999999999999832267999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL-PEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+- ..+|..|++++++.++...+|.+|+|++++. +-....+++-.|..+|.+.|+-+.+..+=.||.+-
T Consensus 1632 KR--tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1632 KR--TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred cc--hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 86 6799999999999999999999999999873 21223458888999999999987777776777654
No 62
>KOG0624|consensus
Probab=99.65 E-value=1.9e-12 Score=121.56 Aligned_cols=207 Identities=12% Similarity=0.065 Sum_probs=135.4
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|+...++......++.. | -...++...+.+|...|+...|+.-++.+-++...+. +..+..+.+++.-|+
T Consensus 169 GD~~~ai~~i~~llEi~-~-----Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnT----e~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-P-----WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNT----EGHYKISQLLYTVGD 238 (504)
T ss_pred CchhhHHHHHHHHHhcC-c-----chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccch----HHHHHHHHHHHhhhh
Confidence 66666677766666652 2 1345677778888888888888888888877766666 777888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
.+.++...+.+++.+|+. ..-+-.|-.+-.-.+.+.- ...
T Consensus 239 ~~~sL~~iRECLKldpdH-----------------K~Cf~~YKklkKv~K~les-----------------------~e~ 278 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPDH-----------------KLCFPFYKKLKKVVKSLES-----------------------AEQ 278 (504)
T ss_pred HHHHHHHHHHHHccCcch-----------------hhHHHHHHHHHHHHHHHHH-----------------------HHH
Confidence 888888888888888874 1111122111111000000 011
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcch--HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYA--KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 603 (703)
....+++-++.+..++.++.+|.-.. ....-.+..++..-|++.+|+....+++...|++ +.++.--...++....
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d--v~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD--VQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhhHH
Confidence 11234567778888888888887421 1234445566667788888888888888888877 4445544455555567
Q ss_pred chHHHHHHHHHHHhCCCcchH
Q psy6461 604 IPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~ 624 (703)
+|.|..-|++|.+.+|++..+
T Consensus 357 YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHH
Confidence 888888888888888877653
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=7.1e-13 Score=138.46 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=99.3
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
+.+.++..++..+...|+.++|..+++++++..| ++ .+...++.+ ..++++++++.+++.++..|++
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~----~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~------ 327 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DE----RLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDT------ 327 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CH----HHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC------
Confidence 3567788888888888888888888888888543 43 455555543 3478888888888888888874
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
+.++..++.+....+++ ++|++.|+++++..|++
T Consensus 328 -----------~~l~l~lgrl~~~~~~~-----------------------------------~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 328 -----------PLLWSTLGQLLMKHGEW-----------------------------------QEASLAFRAALKQRPDA 361 (398)
T ss_pred -----------HHHHHHHHHHHHHCCCH-----------------------------------HHHHHHHHHHHhcCCCH
Confidence 77788888887777665 88888888888888875
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAV 582 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 582 (703)
..+..++.++.+.|+.++|..+|++++...
T Consensus 362 ---~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 ---YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 356778888888888888888888887654
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.64 E-value=1.1e-13 Score=138.27 Aligned_cols=223 Identities=15% Similarity=0.026 Sum_probs=171.1
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
+..+.++..+.+++...+. .++.....|+..|.++...|+.++|+..|+++++.+|+++ ..|+.+|.++...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~--~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDL--TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA----DAYNYLGIYLTQAGN 113 (296)
T ss_pred hHHHHHHHHHHHHHccccC--CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCC
Confidence 3456788888888865321 1234578899999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|...|+++++.+|++ ...|...+.++...|++
T Consensus 114 ~~~A~~~~~~Al~l~P~~-----------------~~a~~~lg~~l~~~g~~---------------------------- 148 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTY-----------------NYAYLNRGIALYYGGRY---------------------------- 148 (296)
T ss_pred HHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHCCCH----------------------------
Confidence 999999999999999985 67788887777766654
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 605 (703)
++|.+.|+++++.+|++.. ...+..+....+++++|...|++++...+.+. +.| .......|+.+
T Consensus 149 -------~eA~~~~~~al~~~P~~~~---~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~~---~~~~~~lg~~~ 213 (296)
T PRK11189 149 -------ELAQDDLLAFYQDDPNDPY---RALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WGW---NIVEFYLGKIS 213 (296)
T ss_pred -------HHHHHHHHHHHHhCCCCHH---HHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cHH---HHHHHHccCCC
Confidence 9999999999999999831 22333334567899999999988776544331 122 22223355665
Q ss_pred HHHHHHHHHHH-------hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 606 KTRQIYERAIE-------SLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 606 ~A~~~~~~al~-------~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
.+ ..++.+.+ ..|.. .+.|..++.++.+.|++++|+..|++|++..+++
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~--~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERL--CETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 54 35555553 33332 3489999999999999999999999999996555
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.64 E-value=1.1e-13 Score=123.61 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (703)
+.|.+.|++|+++.|++ ..+..+||.|+...|.+++|...|++|+..-.-......|........+.|+.+.|+..|+
T Consensus 86 ~~A~e~YrkAlsl~p~~--GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 86 DLADESYRKALSLAPNN--GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred hhHHHHHHHHHhcCCCc--cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 44444455555544444 2344444444444444555555554444331100011123333333333444555555555
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 613 RAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 613 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
++|+.+|+.+. .....++.+.+.|++-.|+..+++-.+-
T Consensus 164 raL~~dp~~~~--~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 164 RALELDPQFPP--ALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHHHhCcCCCh--HHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 55555554443 3444444555555555555555544433
No 66
>KOG0624|consensus
Probab=99.64 E-value=8.5e-13 Score=123.90 Aligned_cols=325 Identities=14% Similarity=0.139 Sum_probs=244.5
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
.+|.+++-.++++.-.. .+.+..|...|..|++.+|++.......+..++.. |....|...+.++|..-|+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAm--------Gksk~al~Dl~rVlelKpD 104 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAM--------GKSKAALQDLSRVLELKPD 104 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh--------cCCccchhhHHHHHhcCcc
Confidence 47889999999998777 99999999999999999999999888888777654 6667799999999999999
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc-----------cccHHHHHHH--HHhcCChHHHHHHHHHHHhh
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH-----------HRVWPLYLSF--VKSHAVPETAVRVFRRYLKL 171 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~~~~~~~--~~~~~~~~~A~~~~~~~l~~ 171 (703)
-..+.+..+.+++++|.+++|..-|+..|+..|.+.. ..-|...-.+ ....|+...|+......|+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 9999999999999999999999999999999995311 1112222221 22457788899999999999
Q ss_pred CCCCHHHH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhc
Q psy6461 172 FPEDAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYT 248 (703)
Q Consensus 172 ~p~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (703)
.|-+.+.+ ..-++..|....|+.-+..+.+ +.
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask---------------------------------------------Ls 219 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGEPKKAIHDLKQASK---------------------------------------------LS 219 (504)
T ss_pred CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh---------------------------------------------cc
Confidence 99887754 3556778888888877766531 11
Q ss_pred cchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHH
Q psy6461 249 DQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRL 328 (703)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (703)
.++.+..+.++.++...|+.+.+....+.+++..|+-. ..|..|..+.+-. +.+
T Consensus 220 ~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK---~Cf~~YKklkKv~-----------------------K~l 273 (504)
T KOG0624|consen 220 QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK---LCFPFYKKLKKVV-----------------------KSL 273 (504)
T ss_pred ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh---hHHHHHHHHHHHH-----------------------HHH
Confidence 13346788889999999999999999999999888643 4444444332211 111
Q ss_pred HHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCCh
Q psy6461 329 ARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408 (703)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 408 (703)
...+..+ ..+.+.++++..+..++.. |... +-....+-.++.++..-+++
T Consensus 274 es~e~~i----------------------------e~~~~t~cle~ge~vlk~e-p~~~-~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 274 ESAEQAI----------------------------EEKHWTECLEAGEKVLKNE-PEET-MIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHHH----------------------------hhhhHHHHHHHHHHHHhcC-Cccc-ceeeeeeheeeecccccCCH
Confidence 1111111 1156667777777777763 3211 11233455567777788899
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
.+|++...++|..+|+++ .+++.-+..++-...++.|+.-|++|.+.++++
T Consensus 324 ~eAiqqC~evL~~d~~dv----~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDV----QVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999887 889999999988889999999999999998875
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.63 E-value=1.3e-13 Score=150.27 Aligned_cols=262 Identities=10% Similarity=-0.014 Sum_probs=190.8
Q ss_pred cCCCcHHHHHHHHh----hhc---CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH---------cCChHHHH
Q psy6461 349 QNPHNVLEWHKRVR----LFD---GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV---------NDQLEDAR 412 (703)
Q Consensus 349 ~~p~~~~~~~~~~~----~~~---~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~---------~~~~~~A~ 412 (703)
.+|.+.++|..+.. +.. ++.++|+..|++++.. +| ++..+|..+|.++.. .+++++|.
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l-dP-----~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~ 324 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM-SP-----NSIAPYCALAECYLSMAQMGIFDKQNAMIKAK 324 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc-CC-----ccHHHHHHHHHHHHHHHHcCCcccchHHHHHH
Confidence 34555665544433 111 3467899999999987 44 356677777776552 24589999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHH
Q psy6461 413 LIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEE 492 (703)
Q Consensus 413 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (703)
..++++++.+|+++ ..|..++.++...|++++|...|+++++.+|++ ...|..++.++.
T Consensus 325 ~~~~~Al~ldP~~~----~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-----------------~~a~~~lg~~l~ 383 (553)
T PRK12370 325 EHAIKATELDHNNP----QALGLLGLINTIHSEYIVGSLLFKQANLLSPIS-----------------ADIKYYYGWNLF 383 (553)
T ss_pred HHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHH
Confidence 99999999999997 889999999999999999999999999999985 788888888887
Q ss_pred hcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHH
Q psy6461 493 SFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAM 572 (703)
Q Consensus 493 ~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 572 (703)
..|+. ++|...++++++.+|.+ +..+...+..+...|++++|+
T Consensus 384 ~~G~~-----------------------------------~eAi~~~~~Al~l~P~~--~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 384 MAGQL-----------------------------------EEALQTINECLKLDPTR--AAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HCCCH-----------------------------------HHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhccCHHHHH
Confidence 77665 89999999999999987 334444555566688999999
Q ss_pred HHHHHHhhcc-CcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 573 AVYERATGAV-LPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 573 ~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
..+++++... |.+ ...+......+...|++++|+..+.+.+...|++.. .+...+..+...| ++|...+++.+
T Consensus 427 ~~~~~~l~~~~p~~--~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 427 RLGDELRSQHLQDN--PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI--AVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHhccccC--HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH--HHHHHHHHHhccH--HHHHHHHHHHH
Confidence 9999988775 444 233444455556688999999999988887777544 5666666666677 47777777765
Q ss_pred cccCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q psy6461 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 682 (703)
+..... ..-......++.-+|+.+.+..+
T Consensus 501 ~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 501 ESEQRI--DNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHhhHh--hcCchHHHHHHHHHhhhHHHHHH
Confidence 542211 11122267777788887777665
No 68
>KOG2003|consensus
Probab=99.63 E-value=1.5e-12 Score=126.33 Aligned_cols=438 Identities=16% Similarity=0.149 Sum_probs=246.5
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC----
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLK--ELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK---- 104 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---- 104 (703)
.....++.-+. +....+|...|+-.++ .||++.-+-....+.+. ...++.+|++.|.-|+...|.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~--------kkr~fskaikfyrmaldqvpsink~ 273 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHF--------KKREFSKAIKFYRMALDQVPSINKD 273 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceee--------ehhhHHHHHHHHHHHHhhccccchh
Confidence 44445555555 6777888888888775 67777665544444332 235688899999999988874
Q ss_pred -CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCH-----
Q psy6461 105 -MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF--PEDA----- 176 (703)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~----- 176 (703)
...+..+.+-.+.+.|+++.|...|+-++...|. ....+.. .-++..-|+.++..+.|.+.+.+. |++.
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn--~~a~~nl-~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~ 350 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN--FIAALNL-IICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKE 350 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc--HHhhhhh-hhhheecCcHHHHHHHHHHHhcCCCCCCcccccCC
Confidence 2244455566667778999999999999988883 2222222 223335677788888888887641 1111
Q ss_pred ----H-HHH------HHHHh--cCCHHHHHHHH---HHhhc---ccccc--------cccCCchhhhHHH-----HHHHH
Q psy6461 177 ----E-DYI------EYLSS--IERLDEAAVKL---AYIVN---KESFV--------SKHGKSNHQLWNE-----LCEMI 224 (703)
Q Consensus 177 ----~-~~~------~~~~~--~~~~~~A~~~~---~~~~~---~~~~~--------~~~~~~~~~~w~~-----~~~~l 224 (703)
. .++ ..+.+ ..+-..|.+.. .+++. .+.|- .......+.+-.. ..+++
T Consensus 351 ~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l 430 (840)
T KOG2003|consen 351 KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL 430 (840)
T ss_pred cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 0 111 11111 11111222222 12221 11110 0000000110000 11122
Q ss_pred hcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC--chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHH
Q psy6461 225 SQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG--LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELS 302 (703)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~ 302 (703)
+ +.+- ..+-++++..-..-......+-.+|+.++.-+| ++..|...-+.++..
T Consensus 431 k-~~d~---~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------------------- 485 (840)
T KOG2003|consen 431 K-NGDI---EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------------------- 485 (840)
T ss_pred h-ccCH---HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc---------------------
Confidence 1 1110 001111111111100011122333333333322 344444444443332
Q ss_pred HHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHH
Q psy6461 303 LNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVK 380 (703)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~ 380 (703)
+-.++.+...... +..|++++|.+.|++++.
T Consensus 486 -----------------------------------------------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 486 -----------------------------------------------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred -----------------------------------------------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 1112222222221 223899999999999987
Q ss_pred hcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 381 TVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
.-. .-.++.++.+-.+...|++++|...|-+.-.+-.++. ++..+++.+|....++.+|++++-++....
T Consensus 519 nda------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~----evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 519 NDA------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA----EVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred Cch------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 521 2356788889999999999999999988766656666 889999999999999999999999999999
Q ss_pred CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHH
Q psy6461 461 ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERAR 536 (703)
Q Consensus 461 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~ 536 (703)
|++ +.+...+++++.+.|+. +-+-..-+.||.....--|..-.+ +... -.+++.
T Consensus 589 p~d-----------------p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy-idtq----f~ekai 646 (840)
T KOG2003|consen 589 PND-----------------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY-IDTQ----FSEKAI 646 (840)
T ss_pred CCC-----------------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH-HhhH----HHHHHH
Confidence 996 89999999999998876 111112223333332223332111 1111 136777
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 537 DLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 537 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
.+|+++.-+.|+. ....+..+.++.+.|++.+|..+|+.....+|.+.
T Consensus 647 ~y~ekaaliqp~~--~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 647 NYFEKAALIQPNQ--SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHhcCccH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 7777777777765 33455666667777777777777777777777663
No 69
>KOG2396|consensus
Probab=99.62 E-value=1.5e-10 Score=114.72 Aligned_cols=496 Identities=16% Similarity=0.201 Sum_probs=278.6
Q ss_pred hhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----------cccCCCCch--hHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy6461 46 KAIINTIYERSLKELPGSYKLWYNYLKLRRKQ----------VKGKVITDP--SYEDVNNTFERSLVFMHKMPRIWLDYG 113 (703)
Q Consensus 46 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~----------~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~ 113 (703)
+-+-+.-||--|+.-.-+..=.+.|++++... .+.+.+-++ -......+|++|+...+.++.+|..|+
T Consensus 33 Ivk~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi 112 (568)
T KOG2396|consen 33 IVKKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYI 112 (568)
T ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 33445566666665555555566676655411 111111111 133466789999999999999999999
Q ss_pred HHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHH
Q psy6461 114 RFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAV-PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEA 192 (703)
Q Consensus 114 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A 192 (703)
.+..+.+.+.+..++|..+|+.+| +++.+|...+.++.+.+. .+.|+++|.++|+.+|+++..|..++...=.+-+-
T Consensus 113 ~f~kk~~~~~~v~ki~~~~l~~Hp--~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~K 190 (568)
T KOG2396|consen 113 AFCKKKKTYGEVKKIFAAMLAKHP--NNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEK 190 (568)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCC--CCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 569999999998887655 79999999999999999998877665211000000
Q ss_pred HHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHH
Q psy6461 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERAR 272 (703)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 272 (703)
...-.+.+.. ... +.+ ....+|. .+-
T Consensus 191 l~~rr~~~g~------------------------~~~-----~~~-----------------------~eie~ge--~~~ 216 (568)
T KOG2396|consen 191 LRNRREELGL------------------------DSS-----DKD-----------------------EEIERGE--LAW 216 (568)
T ss_pred HHHHHHHhcc------------------------ccc-----hhH-----------------------HHHHHHH--HHH
Confidence 0000111100 000 000 0000000 000
Q ss_pred HHHHHHHhhcC-Ccc----cHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy6461 273 DIYEEAIQTVT-TVR----DFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLL 347 (703)
Q Consensus 273 ~~~~~~l~~~~-~~~----~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (703)
..+...+.... ... +-........++ ....++. ..
T Consensus 217 ~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel----------------------------~k~i~d~------------~~ 256 (568)
T KOG2396|consen 217 INYANSVDIIKGAVKSVELSVAEKFDFLKEL----------------------------QKNIIDD------------LQ 256 (568)
T ss_pred HhhccchhhhhcchhhcchHHHHHHHHHHHH----------------------------HHHHHHH------------Hh
Confidence 11110000000 000 000000000000 1111111 24
Q ss_pred hcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcc
Q psy6461 348 RQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVE 427 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 427 (703)
...|.++..|...++ ..++-...+ +... ...........-+-+....+|+.+++.-|+.
T Consensus 257 ~~~~~np~~~~~laq----------r~l~i~~~t-dl~~--------~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~-- 315 (568)
T KOG2396|consen 257 SKAPDNPLLWDDLAQ----------RELEILSQT-DLQH--------TDNQAKAVEVGSKESRCCAVYEEAVKTLPTE-- 315 (568)
T ss_pred ccCCCCCccHHHHHH----------HHHHHHHHh-hccc--------hhhhhhchhcchhHHHHHHHHHHHHHHhhHH--
Confidence 457888888865543 122211111 0000 0111122222234456678999999876654
Q ss_pred hHHHHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHH
Q psy6461 428 DLATVWCEWAELELRA------GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYE 501 (703)
Q Consensus 428 ~~~~~~~~~~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 501 (703)
..|..|+.+.+.. .....-..+++++.....-.- -.+..+.....++.....- .+
T Consensus 316 ---sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~--------------~~~~~ys~~~l~~~t~~~~--r~ 376 (568)
T KOG2396|consen 316 ---SMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSE--------------CLYKQYSVLLLCLNTLNEA--RE 376 (568)
T ss_pred ---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccc--------------chHHHHHHHHHHHhccchH--hH
Confidence 6777777665432 245556667777664332100 0133333333333333221 11
Q ss_pred hHhh----cCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhCCCcchHHHHHHHHHHHHHcCC-hHHH-HH
Q psy6461 502 KGIA----LFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE--QCLEACPPRYAKTLYLLYAKLEEEHGL-ARHA-MA 573 (703)
Q Consensus 502 ~al~----~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~a~~~~~~g~-~~~A-~~ 573 (703)
-+.. .| ..+...|..+++.+..... |-..-.++ ..++..+.+ +.+..|...- .|+ .... ..
T Consensus 377 ~a~~l~~e~f--~~s~k~~~~kl~~~~~s~s----D~q~~f~~l~n~~r~~~~s---~~~~~w~s~~--~~dsl~~~~~~ 445 (568)
T KOG2396|consen 377 VAVKLTTELF--RDSGKMWQLKLQVLIESKS----DFQMLFEELFNHLRKQVCS---ELLISWASAS--EGDSLQEDTLD 445 (568)
T ss_pred HHHHhhHHHh--cchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHhcc---hhHHHHHHHh--hccchhHHHHH
Confidence 1221 22 4678889998876554321 22222222 334444443 3455554433 233 2222 23
Q ss_pred HHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q psy6461 574 VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL--GEIDRARAIYAHCS 651 (703)
Q Consensus 574 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~--g~~~~A~~~~~~a~ 651 (703)
++-.++........+.+-..|+.+..+.+...+||.+|.+....-|-+.. ++-..+.++... -+...+|..|++|+
T Consensus 446 ~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~--l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 446 LIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLD--LFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHH--HHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 34444444444344667788999999999999999999999888776554 777788887553 23899999999999
Q ss_pred cccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q psy6461 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRS-VQAQ 692 (703)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~ 692 (703)
.... .++.+|.+|..++..+|.++.+-.+.-.|++ ++.+
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 8765 3699999999999999999999888655555 6644
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=2.5e-13 Score=132.02 Aligned_cols=203 Identities=16% Similarity=0.042 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....+..++..+...|++++|+..++++++..|.+. ..+..++.++...|++++|...+++++...|.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------- 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----LAYLALALYYQQLGELEKAEDSFRRALTLNPNN------- 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------
Confidence 467788889999999999999999999999888876 788889999999999999999999999988874
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
...+..++.++...|++ ++|...|++++...+...
T Consensus 99 ----------~~~~~~~~~~~~~~g~~-----------------------------------~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 99 ----------GDVLNNYGTFLCQQGKY-----------------------------------EQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred ----------HHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHHHhcccccc
Confidence 56777777776665554 889999999887543221
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
....+..++.++...|++++|...+++++...|.+ ...+..+.......|++++|...++++++..|+++. .+...
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ 209 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE--SLWLG 209 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH
Confidence 24578888888889999999999999999888876 345556666666778888888888888888776544 56667
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+.++...|+.+.|+.+.+.+...
T Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 210 IRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhh
Confidence 77888888888888887776544
No 71
>KOG1127|consensus
Probab=99.62 E-value=4.9e-12 Score=134.22 Aligned_cols=379 Identities=12% Similarity=0.091 Sum_probs=215.7
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHhcccCCCCchhH
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYK--LWYNYLKLRRKQVKGKVITDPSY 88 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~--~w~~~~~~~~~~~~~~~~~~~~~ 88 (703)
++.....-|.++.+.+|.++++|...++.+. ..+.+.|..+.=++-+..|--.. -|....-+ ..+.+++
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y--------yLea~n~ 578 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY--------YLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc--------ccCccch
Confidence 3444557899999999999999999999888 89999999887777777774443 34332222 2234789
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHH
Q psy6461 89 EDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168 (703)
Q Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 168 (703)
..|..-|+.|++.+|++...|..+|..|...|++..|.++|.+|....|.+.. .-...+-++...|++.+|...+...
T Consensus 579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y--~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY--GRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH--HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999995421 1122244556789999999999888
Q ss_pred HhhCCCCH-------HHHHHH---HHhcCCHHHHHHHHHHhhcccccccccC-CchhhhHHHHHHHHh----cCcccccc
Q psy6461 169 LKLFPEDA-------EDYIEY---LSSIERLDEAAVKLAYIVNKESFVSKHG-KSNHQLWNELCEMIS----QNPDKIRS 233 (703)
Q Consensus 169 l~~~p~~~-------~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~l~----~~~~~~~~ 233 (703)
+....... +.++.. +...|-+..|...+++.+..-.....+. .+....|.-..+... -.|+-+..
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~ 736 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM 736 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH
Confidence 76543222 122221 1223333333333333221000000111 222233333222110 01111100
Q ss_pred ccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCch---H---HHHHHHHHHHhhcCCcccHHHHHHHHHH-HHHHHHHHH
Q psy6461 234 LNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLF---E---RARDIYEEAIQTVTTVRDFTQVFDAYAQ-FEELSLNKR 306 (703)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~l~~~~~~~~~~~l~~~~~~-~e~~~~~~~ 306 (703)
.... .+-.-....+.. + -|...+-..++...+...+..+-..|.. |.. .
T Consensus 737 h~l~-------------------il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~-l---- 792 (1238)
T KOG1127|consen 737 HYLI-------------------ILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL-L---- 792 (1238)
T ss_pred HHHH-------------------HHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH-c----
Confidence 0000 000000011111 0 0111111111111111111111111111 000 0
Q ss_pred HHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc-CCchhHHHHHHHHHHhcCCC
Q psy6461 307 MEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD-GKPLDIIRTYTEAVKTVDPK 385 (703)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~ 385 (703)
. . +... ...++.++... ++...++...|..+.-+.. |++.-+..+|-+++...+
T Consensus 793 -------~-e-t~~~--~~~Ai~c~Kka------------V~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep-- 847 (1238)
T KOG1127|consen 793 -------G-E-TMKD--ACTAIRCCKKA------------VSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEP-- 847 (1238)
T ss_pred -------C-C-cchh--HHHHHHHHHHH------------HHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccc--
Confidence 0 0 0000 02233334432 5566777777777766544 667777777777666532
Q ss_pred ccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 386 LAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARAT 457 (703)
Q Consensus 386 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 457 (703)
...-.|.+++.++..+.+++-|...|.++..++|.+. ..|...+.+....|+.-++..+|.-..
T Consensus 848 ----~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl----~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 848 ----TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL----VQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred ----cchhheeccceeEEecccHHHhhHHHHhhhhcCchhh----HHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 2345688888888888888888888888888888776 778887777777777777777776533
No 72
>KOG4162|consensus
Probab=99.61 E-value=2.8e-11 Score=125.81 Aligned_cols=425 Identities=16% Similarity=0.091 Sum_probs=257.4
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCHHHHH
Q psy6461 103 HKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF--PEDAEDYI 180 (703)
Q Consensus 103 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 180 (703)
-+++.+|-.+.-+....|+++.+.+.|++++...- .....|..++..+...|....|+.+++..+... |.+...++
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 35788888888888888999999999999987554 347889999888888888889999999998877 66665432
Q ss_pred ---HHH-HhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHH
Q psy6461 181 ---EYL-SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWN 256 (703)
Q Consensus 181 ---~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (703)
+.+ .+.+..++++..-.++++.-+- . .. . -.+..+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~-----~---------------~~-----------------~---l~~~~~l 437 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGG-----Q---------------RS-----------------H---LKPRGYL 437 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhh-----h---------------hh-----------------h---hhhhHHH
Confidence 222 4567777777666666531000 0 00 0 0011222
Q ss_pred HHHHHHH----Hh-------CchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHH
Q psy6461 257 SLADYYI----RS-------GLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELE 325 (703)
Q Consensus 257 ~l~~~~~----~~-------~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (703)
.+|-.|. .. ....++...++++++..|++.
T Consensus 438 ~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp--------------------------------------- 478 (799)
T KOG4162|consen 438 FLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP--------------------------------------- 478 (799)
T ss_pred HHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc---------------------------------------
Confidence 2222221 11 112234445555555544433
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH
Q psy6461 326 LRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE 403 (703)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 403 (703)
.+.+..+-.+ .++.+.|.+...+++..... .....|..++-+..
T Consensus 479 -----------------------------~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~-----~~~~~whLLALvlS 524 (799)
T KOG4162|consen 479 -----------------------------LVIFYLALQYAEQRQLTSALDYAREALALNRG-----DSAKAWHLLALVLS 524 (799)
T ss_pred -----------------------------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHh
Confidence 3322222211 14555666666666665222 24556777777777
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH-HHHH-----
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV-QARV----- 477 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~-~~~~----- 477 (703)
..+++..|+.+...++...|.|. .+-..-+.++...++.++|.......+..-....+.....+-+ ..++
T Consensus 525 a~kr~~~Al~vvd~al~E~~~N~----~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 525 AQKRLKEALDVVDAALEEFGDNH----VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhh----hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 77777777777777777766654 4444444555556666666655443332111000000000000 0000
Q ss_pred ------HhhHHHHHHHHHHHHhcCChhHHHhHhhcC---CCCc-----hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy6461 478 ------YKSIKLWSLYADLEESFGTFKAYEKGIALF---KWPY-----IFDIWNTYLTKFLSRYGGTKLERARDLFEQCL 543 (703)
Q Consensus 478 ------~~~~~~~~~~~~~~~~~~~~~~~e~al~~~---~~~~-----~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al 543 (703)
............+....+....++..+..+ |.+. ...+|..-...+.. .+..++++.++.++-
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~---~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL---SGNDDEARSCLLEAS 677 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHH
Confidence 000111111111111211111223333322 2222 34455555543333 356799999999999
Q ss_pred HhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch--HHHHHHHHHHHhCCCc
Q psy6461 544 EACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP--KTRQIYERAIESLPEE 621 (703)
Q Consensus 544 ~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~ 621 (703)
+++|.. ...|..-|......|...+|...|..|+..+|++ +...........+.|+.. ..+.+...+++.+|.+
T Consensus 678 ~~~~l~--~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 678 KIDPLS--ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH--VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred hcchhh--HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC
Confidence 999987 5688999999999999999999999999999998 455666666666666544 4455999999999998
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 622 PTRQMCLKFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 622 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
+. .|..++.+..+.|+.++|-..|+-|+++.+
T Consensus 754 ~e--aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 754 HE--AWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HH--HHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 76 899999999999999999999999999843
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.61 E-value=2.5e-13 Score=121.26 Aligned_cols=203 Identities=14% Similarity=0.035 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
..+.+.+|.-|...|++..|+.-++++|+.+|++. ..|..++.++.+.|..+.|.+.|++|+...|++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~----~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-------- 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY----LAHLVRAHYYQKLGENDLADESYRKALSLAPNN-------- 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc--------
Confidence 34667778888888888888888888888888886 788888888888888888888888888888884
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc-
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY- 550 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~- 550 (703)
.++.+.|+.++..+|.+ ++|.+.|++|+.. |...
T Consensus 103 ---------GdVLNNYG~FLC~qg~~-----------------------------------~eA~q~F~~Al~~-P~Y~~ 137 (250)
T COG3063 103 ---------GDVLNNYGAFLCAQGRP-----------------------------------EEAMQQFERALAD-PAYGE 137 (250)
T ss_pred ---------cchhhhhhHHHHhCCCh-----------------------------------HHHHHHHHHHHhC-CCCCC
Confidence 78888888887776654 7788888887773 3321
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
....|.+.+-+-.+.|+++.|+..|+|++..+|..+ ...........+.|++-.|+..+++-....+-+.. ....-
T Consensus 138 ~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~--sL~L~ 213 (250)
T COG3063 138 PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--PALLELARLHYKAGDYAPARLYLERYQQRGGAQAE--SLLLG 213 (250)
T ss_pred cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH--HHHHH
Confidence 134677777777788888888888888888877763 34445556666677888888777777777663332 33333
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
+++....|+-+.|-.+=.+-...+|
T Consensus 214 iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 214 IRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC
Confidence 5777777877666655444444433
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=1.6e-13 Score=149.64 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=173.0
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR---------AGQEEAALRLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
+++++|+..|+++++.+|+++ ..|..++.++.. .+++++|...++++++.+|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a----~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~------------- 337 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSI----APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN------------- 337 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-------------
Confidence 457899999999999999987 777777765542 245899999999999999995
Q ss_pred HHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 477 VYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYL 556 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 556 (703)
...|..++.++...|++ ++|...|+++++.+|++ +..|.
T Consensus 338 ----~~a~~~lg~~~~~~g~~-----------------------------------~~A~~~~~~Al~l~P~~--~~a~~ 376 (553)
T PRK12370 338 ----PQALGLLGLINTIHSEY-----------------------------------IVGSLLFKQANLLSPIS--ADIKY 376 (553)
T ss_pred ----HHHHHHHHHHHHHccCH-----------------------------------HHHHHHHHHHHHhCCCC--HHHHH
Confidence 78888888777776654 99999999999999999 67899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-CCcchHHHHHHHHHHHH
Q psy6461 557 LYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL-PEEPTRQMCLKFAEMET 635 (703)
Q Consensus 557 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~a~~~~ 635 (703)
.+|.++...|++++|+..+++++...|.+.....+...+ ....|++++|...++++++.. |+++. .+..++.++.
T Consensus 377 ~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~--~~~~g~~eeA~~~~~~~l~~~~p~~~~--~~~~la~~l~ 452 (553)
T PRK12370 377 YYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI--TYYHTGIDDAIRLGDELRSQHLQDNPI--LLSMQVMFLS 452 (553)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH--HHhccCHHHHHHHHHHHHHhccccCHH--HHHHHHHHHH
Confidence 999999999999999999999999999875433333322 334688999999999999885 66655 6788889999
Q ss_pred HcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6461 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRS 688 (703)
Q Consensus 636 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 688 (703)
..|++++|+..+++.... +|+ ....+..........| +.+...++...+
T Consensus 453 ~~G~~~eA~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 453 LKGKHELARKLTKEISTQ-EIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred hCCCHHHHHHHHHHhhhc-cch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 999999999999997666 343 4666666666666666 466655544333
No 75
>KOG1129|consensus
Probab=99.60 E-value=2.2e-13 Score=127.03 Aligned_cols=287 Identities=14% Similarity=0.089 Sum_probs=221.6
Q ss_pred cCCCcHHHHHHHHhhhcCCchhHHHHHHHHH--HhcCCCccCCchhHHHH--HHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 349 QNPHNVLEWHKRVRLFDGKPLDIIRTYTEAV--KTVDPKLAVGKLHTLWI--EFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 349 ~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~--~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
..|.-..+.+.++-..++|...+.......+ +.-.|....+...+-|- .+|++|.+.|-+.+|...++.+++-.|
T Consensus 176 ~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~- 254 (478)
T KOG1129|consen 176 ERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP- 254 (478)
T ss_pred cChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-
Confidence 3455566667776666677766665443332 22233333334444443 469999999999999999999998754
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHh
Q psy6461 425 KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGI 504 (703)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al 504 (703)
.+ +.+..++..|.+.+++..|+.+|...+...|.+ .......+.+.+..++.
T Consensus 255 ~~----dTfllLskvY~ridQP~~AL~~~~~gld~fP~~-----------------VT~l~g~ARi~eam~~~------- 306 (478)
T KOG1129|consen 255 HP----DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD-----------------VTYLLGQARIHEAMEQQ------- 306 (478)
T ss_pred ch----hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch-----------------hhhhhhhHHHHHHHHhH-------
Confidence 34 788999999999999999999999999999986 55566666776665554
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 505 ALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 505 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
+.|.++|+.+++.+|.+ .+...-.+.-+.-.|+++-|+..|.|.++..-.
T Consensus 307 ----------------------------~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 307 ----------------------------EDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred ----------------------------HHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 99999999999999998 344433444444578999999999999998766
Q ss_pred chHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhH
Q psy6461 585 EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLP-EEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFW 663 (703)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 663 (703)
+ +++|+.....+.-.+++|-+...|++|+.... +.....+|..++.+..-.|++..|.+.|+-|+.. +++ +..-+
T Consensus 357 s--peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-d~~-h~eal 432 (478)
T KOG1129|consen 357 S--PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-DAQ-HGEAL 432 (478)
T ss_pred C--hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-Ccc-hHHHH
Confidence 5 56888777777767899999999999998754 2234569999999999999999999999999998 444 68999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcccc
Q psy6461 664 AAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699 (703)
Q Consensus 664 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (703)
++++-++...|+.+.|+..+.-+..++ +++-+|+|
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~-P~m~E~~~ 467 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVM-PDMAEVTT 467 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhC-cccccccc
Confidence 999999999999999999998777765 44445544
No 76
>KOG1174|consensus
Probab=99.59 E-value=8e-12 Score=120.34 Aligned_cols=375 Identities=13% Similarity=0.122 Sum_probs=247.5
Q ss_pred HHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH--HH-HH
Q psy6461 37 YIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI--WL-DY 112 (703)
Q Consensus 37 ~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~-~~ 112 (703)
++.++. .++-.++...|...+...|-..+.-...+..-+. | ++.+... -.++...|..+-+ |+ .+
T Consensus 136 la~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~---------g-~e~~S~~-m~~~~~~~~~dwls~wika~ 204 (564)
T KOG1174|consen 136 LARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN---------G-NEINSLV-MHAATVPDHFDWLSKWIKAL 204 (564)
T ss_pred HHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc---------c-hhhhhhh-hhheecCCCccHHHHHHHHH
Confidence 344554 3343477778888899999777666665554221 1 2222222 2344556665544 43 34
Q ss_pred HHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHH---HHHHHHhcCCH
Q psy6461 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERL 189 (703)
Q Consensus 113 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~~ 189 (703)
+.++.......-+-.+|-.-.+..| .+..+....+.++...|+.++|+-.|+++...+|.+... |.-++...|++
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr--~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLR--CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCC--ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence 5555445555566667777777788 568888899999999999999999999999999988653 22223344444
Q ss_pred HHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchH
Q psy6461 190 DEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFE 269 (703)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (703)
++-.++-..+..... ....-|+.-+......+
T Consensus 283 e~~~~L~~~Lf~~~~---------------------------------------------~ta~~wfV~~~~l~~~K--- 314 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVK---------------------------------------------YTASHWFVHAQLLYDEK--- 314 (564)
T ss_pred hhHHHHHHHHHhhhh---------------------------------------------cchhhhhhhhhhhhhhh---
Confidence 433222222110000 00112222222222222
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy6461 270 RARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQ 349 (703)
Q Consensus 270 ~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (703)
T Consensus 315 -------------------------------------------------------------------------------- 314 (564)
T KOG1174|consen 315 -------------------------------------------------------------------------------- 314 (564)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH
Q psy6461 350 NPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL 429 (703)
Q Consensus 350 ~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 429 (703)
++..|+..-+++|+.. + +....++.-|.++...|+.++|.-.|+.|..+.|...
T Consensus 315 -----------------~~~rAL~~~eK~I~~~-~-----r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--- 368 (564)
T KOG1174|consen 315 -----------------KFERALNFVEKCIDSE-P-----RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--- 368 (564)
T ss_pred -----------------hHHHHHHHHHHHhccC-c-----ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH---
Confidence 3334444445555541 2 3455677778888889999999999999998888776
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHH-HHHHhcCChhHHHhHhhcCC
Q psy6461 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYA-DLEESFGTFKAYEKGIALFK 508 (703)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~al~~~~ 508 (703)
..|..+...|+..|++.+|..+-..++...|.+ .+.....+ .+. ++
T Consensus 369 -~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-----------------A~~LtL~g~~V~---------------~~ 415 (564)
T KOG1174|consen 369 -EIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-----------------ARSLTLFGTLVL---------------FP 415 (564)
T ss_pred -HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-----------------hhhhhhhcceee---------------cc
Confidence 888899999999999999999888888888773 33333332 111 11
Q ss_pred CCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH
Q psy6461 509 WPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF 588 (703)
Q Consensus 509 ~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 588 (703)
+| .-.++|...++++++..|.. ..+-...+.+....|.++.+++++++.+..+|+.
T Consensus 416 dp-------------------~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--- 471 (564)
T KOG1174|consen 416 DP-------------------RMREKAKKFAEKSLKINPIY--TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--- 471 (564)
T ss_pred Cc-------------------hhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc---
Confidence 11 11289999999999999998 4588899999999999999999999999999985
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 589 EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL 637 (703)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 637 (703)
.+-....++..-...+.+|.+.|..||..+|++.. ...++-.++...
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~--sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR--TLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH--HHHHHHHHHhcc
Confidence 46667777777777899999999999999998764 344443444333
No 77
>KOG0548|consensus
Probab=99.59 E-value=1.2e-11 Score=123.76 Aligned_cols=445 Identities=15% Similarity=0.101 Sum_probs=261.8
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.|+++.|...|-.++..+|.+--+..+....+... |+|++|...-.+.++.+|.=+..|...|..+...|++
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~--------~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--------GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHH--------hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 79999999999999999999877776665555443 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcC-----------------Ch----HHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA-----------------VP----ETAVRVFRRYLKLFPEDAEDYIE 181 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-----------------~~----~~A~~~~~~~l~~~p~~~~~~~~ 181 (703)
++|+..|.++|+.+|+ +..+...+.+.+.... ++ -.....|...++..|.++..+-.
T Consensus 87 ~eA~~ay~~GL~~d~~--n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS--NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhcCCc--hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999999994 4666666666542210 00 00111222222222222211111
Q ss_pred HHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcc----ccccccHHHH-HHhHhhhhccchhhHHH
Q psy6461 182 YLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPD----KIRSLNVDAI-IRGGLRRYTDQLGHLWN 256 (703)
Q Consensus 182 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 256 (703)
++ .-.++..|.-.+..+-.. .+. ..+... ..-..+|. .......+.. .+. .........
T Consensus 165 ~l-~d~r~m~a~~~l~~~~~~-~~~-~~~~~~--------~~~~~~p~~~~~~~~~~~~d~~ee~~-----~k~~a~~ek 228 (539)
T KOG0548|consen 165 YL-NDPRLMKADGQLKGVDEL-LFY-ASGIEI--------LASMAEPCKQEHNGFPIIEDNTEERR-----VKEKAHKEK 228 (539)
T ss_pred cc-ccHHHHHHHHHHhcCccc-ccc-cccccc--------CCCCCCcccccCCCCCccchhHHHHH-----HHHhhhHHH
Confidence 11 111122222222111000 000 000000 00000110 0000000000 000 001123466
Q ss_pred HHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHH-HHHHHHHHHH
Q psy6461 257 SLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELE-LRLARLEDLM 335 (703)
Q Consensus 257 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 335 (703)
.+|+......+++.|...|..++... +...+.. -.+.+.++......+...-. ...+.. .....+.- |
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~-n~aA~~~e~~~~~~c~~~c~--------~a~E~gre~rad~kl-I 297 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA-TDITYLN-NIAAVYLERGKYAECIELCE--------KAVEVGRELRADYKL-I 297 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHH-HHHHHHHhccHHHHhhcchH--------HHHHHhHHHHHHHHH-H
Confidence 78888899999999999999999876 3222111 11222233222111100000 000000 00000000 0
Q ss_pred hhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHH
Q psy6461 336 ERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIF 415 (703)
Q Consensus 336 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 415 (703)
.....+ ..-+..-.++++.++..|.+++... +. ...+.+.+..+++....
T Consensus 298 -------ak~~~r---------~g~a~~k~~~~~~ai~~~~kaLte~-------Rt-------~~~ls~lk~~Ek~~k~~ 347 (539)
T KOG0548|consen 298 -------AKALAR---------LGNAYTKREDYEGAIKYYQKALTEH-------RT-------PDLLSKLKEAEKALKEA 347 (539)
T ss_pred -------HHHHHH---------hhhhhhhHHhHHHHHHHHHHHhhhh-------cC-------HHHHHHHHHHHHHHHHH
Confidence 000000 0000011166778888888877642 11 33444566677777777
Q ss_pred HHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcC
Q psy6461 416 DKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFG 495 (703)
Q Consensus 416 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (703)
++..-++|.-. .--..-+.-.++.|++.+|...|++|+..+|++ ..+|...+-++...|
T Consensus 348 e~~a~~~pe~A----~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-----------------a~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 348 ERKAYINPEKA----EEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-----------------ARLYSNRAACYLKLG 406 (539)
T ss_pred HHHHhhChhHH----HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-----------------hHHHHHHHHHHHHHh
Confidence 77666666543 333344677788999999999999999999995 888988888888877
Q ss_pred ChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q psy6461 496 TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575 (703)
Q Consensus 496 ~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 575 (703)
++ .+|.+-.+.+++++|+. ...|+.-|.++....++++|...|
T Consensus 407 ~~-----------------------------------~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 407 EY-----------------------------------PEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred hH-----------------------------------HHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 88999999999999998 579999999999999999999999
Q ss_pred HHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHH
Q psy6461 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERA 614 (703)
Q Consensus 576 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 614 (703)
..+++.+|.+. .+-..|............-.++.+++
T Consensus 450 ~eale~dp~~~--e~~~~~~rc~~a~~~~~~~ee~~~r~ 486 (539)
T KOG0548|consen 450 QEALELDPSNA--EAIDGYRRCVEAQRGDETPEETKRRA 486 (539)
T ss_pred HHHHhcCchhH--HHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence 99999999873 34444444443333444555566663
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.59 E-value=6.7e-13 Score=132.61 Aligned_cols=217 Identities=11% Similarity=0.136 Sum_probs=148.1
Q ss_pred hhhHHHHhcCCCC----hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 18 LPYEEEILRNPFS----VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 18 ~~~e~~l~~~P~~----~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
..+.++|...|.+ ...|...+..+. .|+.++|+..|+++++.+|+++..|..++...... |++++|.
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~--------g~~~~A~ 118 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQA--------GNFDAAY 118 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--------CCHHHHH
Confidence 3455667544433 455888887777 88888888888888888888888888888776553 7888888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q psy6461 93 NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172 (703)
Q Consensus 93 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 172 (703)
..|+++++.+|++..+|...|.++...|++++|...|+++++..|.+....+|. .+....+++++|+..|++.+...
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~---~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL---YLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHccCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888888888532112332 23334567888888887766543
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchh
Q psy6461 173 PEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252 (703)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (703)
+.....+.......|+..++ ..+..+... +...+. ..+...
T Consensus 196 ~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~---------------------~~~~~~-----------------l~~~~~ 236 (296)
T PRK11189 196 DKEQWGWNIVEFYLGKISEE-TLMERLKAG---------------------ATDNTE-----------------LAERLC 236 (296)
T ss_pred CccccHHHHHHHHccCCCHH-HHHHHHHhc---------------------CCCcHH-----------------HHHHHH
Confidence 22221232222344554333 233322210 000000 001224
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCC
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTT 284 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 284 (703)
++|+.+|.++...|++++|+..|++++...|.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 68999999999999999999999999997753
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.56 E-value=1.8e-12 Score=125.85 Aligned_cols=200 Identities=20% Similarity=0.145 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCC
Q psy6461 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKW 509 (703)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~ 509 (703)
...+..++..+...|++++|...+++++...|++ ...+...+.++...|++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----------------~~~~~~la~~~~~~~~~------------ 81 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-----------------YLAYLALALYYQQLGEL------------ 81 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHHcCCH------------
Confidence 4788999999999999999999999999999884 67777777777776654
Q ss_pred CchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHH
Q psy6461 510 PYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFE 589 (703)
Q Consensus 510 ~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 589 (703)
++|.+.|+++++..|.+ ...+..++.++...|++++|...+++++...+......
T Consensus 82 -----------------------~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 136 (234)
T TIGR02521 82 -----------------------EKAEDSFRRALTLNPNN--GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPAR 136 (234)
T ss_pred -----------------------HHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchH
Confidence 99999999999999988 56899999999999999999999999998643332344
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHH
Q psy6461 590 MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSF 669 (703)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 669 (703)
.+..........|++++|...+.++++..|+++. .+..++.++...|++++|...++++++. .+. .+..+...+..
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~-~~~~~~~~~~~ 212 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE--SLLELAELYYLRGQYKDARAYLERYQQT-YNQ-TAESLWLGIRI 212 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-CHHHHHHHHHH
Confidence 5666667777889999999999999999998765 7889999999999999999999999998 444 46666688888
Q ss_pred HHHcCCHHHHHHHHHHHH
Q psy6461 670 EITHGNEDTMREMLRIKR 687 (703)
Q Consensus 670 ~~~~g~~~~~~~~~~~~~ 687 (703)
....|+.+.+....+...
T Consensus 213 ~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 213 ARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 888999999987765443
No 80
>KOG0128|consensus
Probab=99.55 E-value=8.1e-11 Score=123.33 Aligned_cols=430 Identities=16% Similarity=0.203 Sum_probs=263.0
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..++.-+..++.++.....|+.+.. .|++++.+..-..+.+.+|.++.+|+.|+.-+.... ..++..++...|+
T Consensus 100 ~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt-----~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 100 RTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMT-----QSEERKEVEELFE 174 (881)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----cCcchhHHHHHHH
Confidence 4556666778999999999999988 999999999999999999999999999998765431 2367888999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhc-------cChHHHHHHHHHHHHhCCc--ccccccHHHHHHHHHhc---CChHHHHHH
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMDQ-------HKITQTRHVFDRALRALPI--TQHHRVWPLYLSFVKSH---AVPETAVRV 164 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~---~~~~~A~~~ 164 (703)
+++.. -.++.+|..+++++... ++++.-|.+|+++|..... +....+|..|.+++... -..++.+.+
T Consensus 175 kal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~ 253 (881)
T KOG0128|consen 175 KALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIAL 253 (881)
T ss_pred HHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99864 45789999999998775 4577899999999986542 12356677777765432 111333444
Q ss_pred HHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHh
Q psy6461 165 FRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244 (703)
Q Consensus 165 ~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (703)
+.+.+... .+.....
T Consensus 254 ~~~el~~~-~D~~~~~---------------------------------------------------------------- 268 (881)
T KOG0128|consen 254 FVRELKQP-LDEDTRG---------------------------------------------------------------- 268 (881)
T ss_pred HHHHHhcc-chhhhhH----------------------------------------------------------------
Confidence 44443321 1100000
Q ss_pred hhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHH
Q psy6461 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIEL 324 (703)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (703)
.-|.... ...-++....-++.+++.
T Consensus 269 --------~~~~~~s----k~h~~~~~~~~~~~a~~~------------------------------------------- 293 (881)
T KOG0128|consen 269 --------WDLSEQS----KAHVYDVETKKLDDALKN------------------------------------------- 293 (881)
T ss_pred --------HHHHHHH----hcchHHHHhccHHHHHHH-------------------------------------------
Confidence 0000000 000000000001110000
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH
Q psy6461 325 ELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV 404 (703)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 404 (703)
+ ...+..|++.+...+ ..-+-|..|..+...
T Consensus 294 ------l-------------------------------------~~~~~~~e~~~q~~~------~~~q~~~~yidfe~~ 324 (881)
T KOG0128|consen 294 ------L-------------------------------------AKILFKFERLVQKEP------IKDQEWMSYIDFEKK 324 (881)
T ss_pred ------H-------------------------------------HHHHHHHHHHhhhhH------HHHHHHHHHHHHHHh
Confidence 0 001111222222211 124468888888888
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR-AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL 483 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
.|+.-.-..++++++...+-.. .+|+.|+.+.-. .+-.+.+..++-+++..||.. ..+
T Consensus 325 ~G~p~ri~l~~eR~~~E~~~~~----~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~t-----------------gdL 383 (881)
T KOG0128|consen 325 SGDPVRIQLIEERAVAEMVLDR----ALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWT-----------------GDL 383 (881)
T ss_pred cCCchHHHHHHHHHHHhccccH----HHHhhhhhhcccccccccccccccchhhcCCchH-----------------HHH
Confidence 9998888889999887766665 889988876543 455666778888889999873 677
Q ss_pred HHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q psy6461 484 WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEE 563 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 563 (703)
|..+...+++.+.. .......+++++... ..++..+..+..
T Consensus 384 ~~rallAleR~re~----------------------------------~~vI~~~l~~~ls~~-----~~l~~~~~~~rr 424 (881)
T KOG0128|consen 384 WKRALLALERNREE----------------------------------ITVIVQNLEKDLSMT-----VELHNDYLAYRR 424 (881)
T ss_pred HHHHHHHHHhcCcc----------------------------------hhhHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 77766444443322 011111111111110 001111111111
Q ss_pred Hc------CChHHHHHHHHHHhhccC------cchHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 564 EH------GLARHAMAVYERATGAVL------PEEMFEMFNIYIKKAAE-IYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 564 ~~------g~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
.. .+++.-++.|..|..... .+....+...|..+++. .++++.||.++...+.....+- .-.|+.+
T Consensus 425 ~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i-ag~Wle~ 503 (881)
T KOG0128|consen 425 RCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI-AGKWLEA 503 (881)
T ss_pred hhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH-HHHHHHH
Confidence 11 122333333433332211 22334556666676655 6889999999998877654432 2279999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhc-ccCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQ-ICDPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
++++...|+...||.++.+|.. ..+|+....++..|.+|++..|+++......
T Consensus 504 ~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~ 557 (881)
T KOG0128|consen 504 INLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCP 557 (881)
T ss_pred HhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhH
Confidence 9999999999999999999975 4455445789999999999999988775443
No 81
>KOG1156|consensus
Probab=99.53 E-value=1.8e-09 Score=110.55 Aligned_cols=242 Identities=12% Similarity=0.074 Sum_probs=158.1
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHH
Q psy6461 32 KHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLD 111 (703)
Q Consensus 32 ~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 111 (703)
..+......+..+.+.+-.+..+..|+.+|+.++.....+-.+. ..|+.++|......+++.++.|+--|--
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~--------~lg~~~ea~~~vr~glr~d~~S~vCwHv 80 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLN--------CLGKKEEAYELVRLGLRNDLKSHVCWHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhh--------cccchHHHHHHHHHHhccCcccchhHHH
Confidence 34445555666777888888888888888888776433322111 1377888888888888888888888988
Q ss_pred HHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHH---HhcCC
Q psy6461 112 YGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYL---SSIER 188 (703)
Q Consensus 112 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~---~~~~~ 188 (703)
+|.++-...++++|.+.|..||...| ++.++|..++-+....++++.....-.+.++..|.....|+.+. .-.|+
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 88888888889999999999998888 45788888887777778888888888888888888888887775 35788
Q ss_pred HHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhcc--chhhHHHHHHHHHHHhC
Q psy6461 189 LDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD--QLGHLWNSLADYYIRSG 266 (703)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 266 (703)
+..|..+++....... .+. +...+.....++..+....+.-..+..++.....-+. +....-..-+++++..+
T Consensus 159 y~~A~~il~ef~~t~~----~~~-s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQN----TSP-SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHhhc----cCC-CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHh
Confidence 8888888876653221 001 1111111111111111111000111111111100000 01123345688999999
Q ss_pred chHHHHHHHHHHHhhcCCcccH
Q psy6461 267 LFERARDIYEEAIQTVTTVRDF 288 (703)
Q Consensus 267 ~~~~A~~~~~~~l~~~~~~~~~ 288 (703)
++++|..+|...+...|+..++
T Consensus 234 ~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred hHHhHHHHHHHHHhhCchhHHH
Confidence 9999999999999999976543
No 82
>KOG1174|consensus
Probab=99.52 E-value=1.1e-11 Score=119.30 Aligned_cols=312 Identities=12% Similarity=0.093 Sum_probs=229.4
Q ss_pred HHHhcCCCChHHHH--HH-HHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 22 EEILRNPFSVKHWL--RY-IEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 22 ~~l~~~P~~~~~w~--~~-~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.++...|.+.-.|. .- +.... ......+..++-...+.+|.++.+.-..+..+-. .|+..+|.-.|++
T Consensus 186 ~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~--------~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 186 HAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY--------NGDYFQAEDIFSS 257 (564)
T ss_pred hheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh--------hcCchHHHHHHHH
Confidence 34555666554443 22 22222 4556667778888889999999999888887543 3889999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+...+|.+...--.|+-++...|++++..++..+.+.... ....-|..-+...-...++..|...-+++++.+|.+.+
T Consensus 258 ~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 258 TLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE 335 (564)
T ss_pred HhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence 9999999999999999999999999999999999988764 33556777777666777889999999999999999999
Q ss_pred HHH---HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhH
Q psy6461 178 DYI---EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254 (703)
Q Consensus 178 ~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (703)
.++ .++...|+.++|.-.|..+... .|. ..+.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~L------------------------ap~---------------------rL~~ 370 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQML------------------------APY---------------------RLEI 370 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhc------------------------chh---------------------hHHH
Confidence 875 5678899999998888776421 121 1357
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH
Q psy6461 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDL 334 (703)
Q Consensus 255 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (703)
+..|...|...|+..+|...-..++...|.+.....++...+.+
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~------------------------------------ 414 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLF------------------------------------ 414 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeec------------------------------------
Confidence 78888889999999998888777776655433221221111111
Q ss_pred HhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHH
Q psy6461 335 MERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLI 414 (703)
Q Consensus 335 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 414 (703)
.+| ..-++|.+++++++... | .+..+-...|.++...|.++.++.+
T Consensus 415 --------------~dp--------------~~rEKAKkf~ek~L~~~-P-----~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 415 --------------PDP--------------RMREKAKKFAEKSLKIN-P-----IYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred --------------cCc--------------hhHHHHHHHHHhhhccC-C-----ccHHHHHHHHHHHHhhCccchHHHH
Confidence 011 11256777888877763 3 2445567778888888888888888
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 415 FDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
+++.+...|+. .+...++.+....+.+++|.+.|..|+.++|++
T Consensus 461 Le~~L~~~~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 461 LEKHLIIFPDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHhhcccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 88888876655 678888888888888888888888888888874
No 83
>KOG1125|consensus
Probab=99.46 E-value=1.4e-12 Score=131.44 Aligned_cols=194 Identities=14% Similarity=0.187 Sum_probs=127.1
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc------------
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVK------------ 79 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~------------ 79 (703)
+.+..+.||.+++++|.+.++|..++.... .++=..|+..++|+++.+|.+.++...++-.+.-+..
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 455668999999999999999999998887 7777889999999999999999888777655442100
Q ss_pred ----------c-----------CCCCchhHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhC
Q psy6461 80 ----------G-----------KVITDPSYEDVNNTFERSLVFMH--KMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136 (703)
Q Consensus 80 ----------~-----------~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 136 (703)
. .......+.....+|-.|...+| .+|.++..+|-++...|++++|...|+.||+..
T Consensus 381 ~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~ 460 (579)
T KOG1125|consen 381 RNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK 460 (579)
T ss_pred HhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC
Confidence 0 00001112334444444444444 455555555555555555555555555555555
Q ss_pred CcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhh
Q psy6461 137 PITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQL 216 (703)
Q Consensus 137 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 216 (703)
| ++..+|+.++..+....+.++|+..|.+++++.|..
T Consensus 461 P--nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y----------------------------------------- 497 (579)
T KOG1125|consen 461 P--NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY----------------------------------------- 497 (579)
T ss_pred C--chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-----------------------------------------
Confidence 5 335555555555444444455555555555554443
Q ss_pred HHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCC
Q psy6461 217 WNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTT 284 (703)
Q Consensus 217 w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 284 (703)
.++|+++|-.++..|.|.+|...|-.+|...+.
T Consensus 498 -----------------------------------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 -----------------------------------VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred -----------------------------------eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 367888999999999999999999998886543
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.1e-09 Score=102.79 Aligned_cols=171 Identities=15% Similarity=0.215 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV-EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
+.-.+..+|....+.++|+++-++..++.+... ...+..|+.++.-+....+.+.|+.++.+|++.+|+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~---------- 212 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK---------- 212 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc----------
Confidence 444555666667777777777777777654332 234566777777777777777777777777777776
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchH
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAK 552 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 552 (703)
+.+.-...++++...|++ +.|.+.++++++-+|... +
T Consensus 213 -------cvRAsi~lG~v~~~~g~y-----------------------------------~~AV~~~e~v~eQn~~yl-~ 249 (389)
T COG2956 213 -------CVRASIILGRVELAKGDY-----------------------------------QKAVEALERVLEQNPEYL-S 249 (389)
T ss_pred -------ceehhhhhhHHHHhccch-----------------------------------HHHHHHHHHHHHhChHHH-H
Confidence 355666666666665554 777777777777777764 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
++.-.+..+|...|+.++.+..+.++++..+..+...+ ..+........+.|.....+-|...|+
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~---l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELM---LADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHH---HHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 56666667777777777777777777777776543222 222233345667777777777777774
No 85
>KOG1125|consensus
Probab=99.44 E-value=1e-11 Score=125.35 Aligned_cols=259 Identities=15% Similarity=0.193 Sum_probs=173.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|+..+|.-.|+.++.. +| ...++|..+|.....+++-..|+..+++|++++|+|. ++...++.-|...|.
T Consensus 299 G~L~~A~LafEAAVkq-dP-----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl----eaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQ-DP-----QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL----EALMALAVSYTNEGL 368 (579)
T ss_pred CCchHHHHHHHHHHhh-Ch-----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH----HHHHHHHHHHhhhhh
Confidence 5555555555555554 22 2345555555555555555555555556655555555 555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
=.+|.+.+++=+...|.- .|..-..-....+. . ..+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y-------------------~~l~~a~~~~~~~~--------------~-----~s~~----- 405 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKY-------------------VHLVSAGENEDFEN--------------T-----KSFL----- 405 (579)
T ss_pred HHHHHHHHHHHHHhCccc-------------------hhccccCccccccC--------------C-----cCCC-----
Confidence 555555555554444431 01000000000000 0 0000
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 605 (703)
....+....++|-.+....|...++.++..+|-++.-.|+|++|+..|+.|+...|.| ..+|+-+..-.....+..
T Consensus 406 --~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~~s~ 481 (579)
T KOG1125|consen 406 --DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGNRSE 481 (579)
T ss_pred --CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCcccH
Confidence 0011245667777888888854447899999999999999999999999999999998 568999888888878899
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC--------CChHhHHHHHHHHHHcCCHH
Q psy6461 606 KTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR--------VTAGFWAAWKSFEITHGNED 677 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~g~~~ 677 (703)
+|...|.+||++-|.... ++..++-.+...|.+++|...|-.|+.+.+.. .+..+|..+..+....+..|
T Consensus 482 EAIsAY~rALqLqP~yVR--~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 482 EAISAYNRALQLQPGYVR--VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHHhcCCCeee--eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 999999999999998655 78888888889999999999999999875431 12469999998888888877
Q ss_pred HHHHHH
Q psy6461 678 TMREML 683 (703)
Q Consensus 678 ~~~~~~ 683 (703)
-+..+.
T Consensus 560 ~l~~a~ 565 (579)
T KOG1125|consen 560 LLQEAA 565 (579)
T ss_pred HHHHhc
Confidence 565543
No 86
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=9.4e-10 Score=103.24 Aligned_cols=273 Identities=15% Similarity=0.150 Sum_probs=198.2
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH-HHHHHHHHHHHHHcC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL-ATVWCEWAELELRAG 444 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~~ 444 (703)
++.++|++.|-+.++. +| ...++.+.+|.++...|+.++|+.+-+-.++. |+-+++- ......+++-|+..|
T Consensus 49 ~Q~dKAvdlF~e~l~~-d~-----~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 49 NQPDKAVDLFLEMLQE-DP-----ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred cCcchHHHHHHHHHhc-Cc-----hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhh
Confidence 7788999999988875 33 46778999999999999999999999887765 5444222 356778888899999
Q ss_pred CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhh-------cCCCCchHHHHH
Q psy6461 445 QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIA-------LFKWPYIFDIWN 517 (703)
Q Consensus 445 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~-------~~~~~~~~~~~~ 517 (703)
=++.|..+|........- -......+..++....++ ++||. .-+.+....+-.
T Consensus 122 l~DRAE~~f~~L~de~ef-----------------a~~AlqqLl~IYQ~treW---~KAId~A~~L~k~~~q~~~~eIAq 181 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEF-----------------AEGALQQLLNIYQATREW---EKAIDVAERLVKLGGQTYRVEIAQ 181 (389)
T ss_pred hhhHHHHHHHHHhcchhh-----------------hHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHcCCccchhHHHH
Confidence 999999999887764422 134455555566655554 44443 335555666666
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHH
Q psy6461 518 TYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKK 597 (703)
Q Consensus 518 ~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 597 (703)
.|...+......++.++|+..+.+|++.+|++ +.+-+.+|+++...|++.+|++.++++++.+|.-. ..+.......
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c--vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl-~evl~~L~~~ 258 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKC--VRASIILGRVELAKGDYQKAVEALERVLEQNPEYL-SEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc--eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-HHHHHHHHHH
Confidence 66655555555678899999999999999998 56888999999999999999999999999999753 2355555666
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcC
Q psy6461 598 AAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 598 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g 674 (703)
+.+.|+.++.+....++.+..++.. +-+..+.+.....-.+.|.....+-+... |+ -..+..+.++....+
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~---~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~-Pt--~~gf~rl~~~~l~da 329 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGAD---AELMLADLIELQEGIDAAQAYLTRQLRRK-PT--MRGFHRLMDYHLADA 329 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCcc---HHHHHHHHHHHhhChHHHHHHHHHHHhhC-Cc--HHHHHHHHHhhhccc
Confidence 6778999999999999999988754 34444454444444667777766666653 43 344555555554443
No 87
>KOG2376|consensus
Probab=99.44 E-value=1.1e-08 Score=103.77 Aligned_cols=448 Identities=15% Similarity=0.107 Sum_probs=250.1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
..|++++|.....+.+...|+++.+..--.-+++..++++.|..+.+.-....- .......-+.++.+.+..++|+.
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~---~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV---INSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh---cchhhHHHHHHHHHcccHHHHHH
Confidence 458999999999999999999998888777888889999998865554222111 12221233444448899999999
Q ss_pred HHHHHHhhCCC-CHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHh
Q psy6461 164 VFRRYLKLFPE-DAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRG 242 (703)
Q Consensus 164 ~~~~~l~~~p~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (703)
.++ .+...+. -.+...+.+.+.|+|++|..+|..+..+..- .....+-..+...-.. ..+. ...
T Consensus 101 ~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-----d~d~~~r~nl~a~~a~-------l~~~--~~q 165 (652)
T KOG2376|consen 101 TLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-----DQDEERRANLLAVAAA-------LQVQ--LLQ 165 (652)
T ss_pred HHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHh-------hhHH--HHH
Confidence 999 4433332 4446688999999999999999998643211 0001111111000000 0000 111
Q ss_pred HhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchH
Q psy6461 243 GLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDI 322 (703)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 322 (703)
....-++...+..++.+-.+...|++.+|+++++.++..+... ++
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~------------l~----------------------- 210 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK------------LE----------------------- 210 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh------------hc-----------------------
Confidence 1112233456788899999999999999999999987653210 00
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHH
Q psy6461 323 ELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFY 402 (703)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 402 (703)
.++.. .+.++.-+ ..+...++.++
T Consensus 211 ------------------------------------------~~d~~--eEeie~el------------~~IrvQlayVl 234 (652)
T KOG2376|consen 211 ------------------------------------------DEDTN--EEEIEEEL------------NPIRVQLAYVL 234 (652)
T ss_pred ------------------------------------------ccccc--hhhHHHHH------------HHHHHHHHHHH
Confidence 01111 11111111 11445666667
Q ss_pred HHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHH-HHHHHHHHHhcCCCCCcccccchhhHHHHHH--h
Q psy6461 403 EVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEE-AALRLMARATATPARPVAYHDEAETVQARVY--K 479 (703)
Q Consensus 403 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~--~ 479 (703)
...|+.++|..+|...++.+|.+.....-+-+.+..+-.-..=++ .++..++.-....+... ...+. +
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~---------l~~Ls~~q 305 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL---------LSKLSKKQ 305 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH---------HHHHHHHH
Confidence 778888888888888888766554222333333333211111011 12222222222211100 00000 0
Q ss_pred hHHHHHHHHHHHHhcCCh-hHHHhHhhcCCCCc--hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 480 SIKLWSLYADLEESFGTF-KAYEKGIALFKWPY--IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYL 556 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~-~~~e~al~~~~~~~--~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 556 (703)
-..++...+.+....+.. +..+...+.-+..+ .+.+...-.....+ ..+..+..++..+....|.+. ..+.+
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~----~~~~ka~e~L~~~~~~~p~~s-~~v~L 380 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVRE----KKHKKAIELLLQFADGHPEKS-KVVLL 380 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH----HHHhhhHHHHHHHhccCCchh-HHHHH
Confidence 011111111111111111 11111111111111 11111111111111 135788889999999999873 46788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHh--------hccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC----CCcc-h
Q psy6461 557 LYAKLEEEHGLARHAMAVYERAT--------GAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL----PEEP-T 623 (703)
Q Consensus 557 ~~a~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~-~ 623 (703)
..+++....|+++.|..++...+ +..-. +.+......+..+.++-+.|..++..|+..- +.+. .
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~---P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL---PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC---hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 88899999999999999999333 22211 2233334444455677777888888888642 2222 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 624 RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
..+|-..+.|..+.|+-++|...++..++..+++
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 2256677889999999999999999999986766
No 88
>KOG1129|consensus
Probab=99.41 E-value=4.8e-11 Score=111.62 Aligned_cols=222 Identities=17% Similarity=0.144 Sum_probs=188.8
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|-+.+|.+.+..++...+ .++.++.+++.|.+..+.+.|..+|..++...|.++ ...+..++++...++
T Consensus 237 gm~r~AekqlqssL~q~~-------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V----T~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFP-------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV----TYLLGQARIHEAMEQ 305 (478)
T ss_pred cChhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh----hhhhhhHHHHHHHHh
Confidence 888999999999988742 367889999999999999999999999999999988 888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
.++|.++|+.+++.+|.++..+-- .. .+ |
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAc-----------ia-----------~~-----------------------y------ 334 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIAC-----------IA-----------VG-----------------------Y------ 334 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeee-----------ee-----------ec-----------------------c------
Confidence 999999999999999987522100 00 00 0
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC-cchHHHHHHHHHHHHHHhcCc
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL-PEEMFEMFNIYIKKAAEIYGI 604 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~ 604 (703)
+-.++++-|...|.+.++.--.+ ++++.+++-+....+.++-++.-|+||+.... +.....+|..........|++
T Consensus 335 -fY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 335 -FYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred -ccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence 01467899999999999987776 78999999999999999999999999998765 333567888777777778999
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 605 PKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 605 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
.-|...|+-||..+|++.. .+..++-+..+.|+++.|+.+|..|.+..
T Consensus 412 nlA~rcfrlaL~~d~~h~e--alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDAQHGE--ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHHHhccCcchHH--HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999765 89999999999999999999999998874
No 89
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.38 E-value=3.4e-12 Score=125.80 Aligned_cols=137 Identities=24% Similarity=0.453 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHhhccCcchHHHHHH
Q psy6461 514 DIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH-GLARHAMAVYERATGAVLPEEMFEMFN 592 (703)
Q Consensus 514 ~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~ 592 (703)
.+|..|+. +.++. +..+.||.+|.+|++..+-. ..+|+.+|.+|... ++.+.|+++|+++++.+|.+ ..+|.
T Consensus 2 ~v~i~~m~-~~~r~--~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~--~~~~~ 74 (280)
T PF05843_consen 2 LVWIQYMR-FMRRT--EGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD--PDFWL 74 (280)
T ss_dssp HHHHHHHH-HHHHH--HHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHH
T ss_pred HHHHHHHH-HHHHh--CChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC--HHHHH
Confidence 36788884 44443 23788888888887544433 46888888888874 55555888888888888877 56788
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 593 IYIKKAAEIYGIPKTRQIYERAIESLPEEP-TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
.|+++++..++.+.||.+|++++...|... ...+|..|+.+|.+.|+.+.+.++++|+.+..+.+
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 888888888888888888888888887766 55688888888888888888888888888876553
No 90
>PLN02789 farnesyltranstransferase
Probab=99.37 E-value=3.2e-10 Score=112.88 Aligned_cols=220 Identities=9% Similarity=-0.004 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG-QEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
+++-.+-.++...+..++|...+.++++++|.+. .+|...+.++...| ++++++..++++++.+|++
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y----taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-------- 105 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNY----TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-------- 105 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc--------
Confidence 3444444455667889999999999999999887 89999988888877 5899999999999999985
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
..+|...+.+....|.. ..+++...++++++.+|++
T Consensus 106 ---------yqaW~~R~~~l~~l~~~---------------------------------~~~~el~~~~kal~~dpkN-- 141 (320)
T PLN02789 106 ---------YQIWHHRRWLAEKLGPD---------------------------------AANKELEFTRKILSLDAKN-- 141 (320)
T ss_pred ---------hHHhHHHHHHHHHcCch---------------------------------hhHHHHHHHHHHHHhCccc--
Confidence 78898877666555431 1256789999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH-hcCc----hHHHHHHHHHHHhCCCcchHHH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE-IYGI----PKTRQIYERAIESLPEEPTRQM 626 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~----~~A~~~~~~al~~~p~~~~~~~ 626 (703)
..+|...+.+....|++++++..++++++.+|.+...+....++..... .++. +++.....++|..+|++.. .
T Consensus 142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S--a 219 (320)
T PLN02789 142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES--P 219 (320)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC--H
Confidence 5699999999999999999999999999999998666655555543220 1222 4677788899999999987 8
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 627 CLKFAEMETK----LGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 627 ~~~~a~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
|..+..++.. .++..+|...+.++++..+. .......++++...
T Consensus 220 W~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~--s~~al~~l~d~~~~ 267 (320)
T PLN02789 220 WRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN--HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHhhcccCC--cHHHHHHHHHHHHh
Confidence 9888888877 34556788888888776333 35555666666543
No 91
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.36 E-value=6.5e-12 Score=123.78 Aligned_cols=138 Identities=24% Similarity=0.516 Sum_probs=120.1
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
-+|+.|+++.+ .+.++.||.+|++|++..+-...+|+.++.++... .++.+.|..+|+++++..|.++.+|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-------~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-------NKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-------CS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 37999999999 77799999999999977777899999999887653 25667799999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCccc-ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPITQ-HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
.|+.++...++.+.||.+|++++...|... ...+|..+++|+.+.|+.+.+.++.+++.+..|...
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999988654 567999999999999999999999999999988854
No 92
>PLN02789 farnesyltranstransferase
Probab=99.31 E-value=1.8e-09 Score=107.51 Aligned_cols=233 Identities=13% Similarity=0.114 Sum_probs=168.4
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND-QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG 444 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (703)
+..++|+..+.++|... | ....+|...+.++...| ++++++..++++++.+|++. .+|...+.+..+.|
T Consensus 51 e~serAL~lt~~aI~ln-P-----~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny----qaW~~R~~~l~~l~ 120 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-P-----GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY----QIWHHRRWLAEKLG 120 (320)
T ss_pred CCCHHHHHHHHHHHHHC-c-----hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch----HHhHHHHHHHHHcC
Confidence 67788999999998873 3 35678999888888877 67999999999999999887 88988887776776
Q ss_pred CH--HHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHH
Q psy6461 445 QE--EAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522 (703)
Q Consensus 445 ~~--~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~ 522 (703)
+. +++...++++++.+|++ ..+|...+-+....|.+
T Consensus 121 ~~~~~~el~~~~kal~~dpkN-----------------y~AW~~R~w~l~~l~~~------------------------- 158 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKN-----------------YHAWSHRQWVLRTLGGW------------------------- 158 (320)
T ss_pred chhhHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHHhhhH-------------------------
Confidence 53 67888999999999985 78888887776665544
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc---CCh----HHHHHHHHHHhhccCcchHHHHHHHHH
Q psy6461 523 FLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH---GLA----RHAMAVYERATGAVLPEEMFEMFNIYI 595 (703)
Q Consensus 523 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~~~~~ 595 (703)
+++.+.++++++.+|.+ ..+|...+.+..+. |.. +++.....+++...|.+.+.+.+...+
T Consensus 159 ----------~eeL~~~~~~I~~d~~N--~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~l 226 (320)
T PLN02789 159 ----------EDELEYCHQLLEEDVRN--NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGL 226 (320)
T ss_pred ----------HHHHHHHHHHHHHCCCc--hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 88999999999999988 45888888776655 323 467777789999999886655555444
Q ss_pred HHHH--HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHhcccC
Q psy6461 596 KKAA--EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG------------------EIDRARAIYAHCSQICD 655 (703)
Q Consensus 596 ~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g------------------~~~~A~~~~~~a~~~~~ 655 (703)
.... ..+...+|...+.+++...|.++. +...+++++.... ..++|..+++..- ..|
T Consensus 227 l~~~~~~l~~~~~~~~~~~~~~~~~~~s~~--al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~d 303 (320)
T PLN02789 227 FKDDKEALVSDPEVSSVCLEVLSKDSNHVF--ALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE-VAD 303 (320)
T ss_pred HhcCCcccccchhHHHHHHHhhcccCCcHH--HHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH-hhC
Confidence 3221 024456688888888888887765 5556666665421 2356777777653 334
Q ss_pred CCCChHhHHHH
Q psy6461 656 PRVTAGFWAAW 666 (703)
Q Consensus 656 ~~~~~~~~~~~ 666 (703)
|= -...|...
T Consensus 304 ~i-r~~yw~~~ 313 (320)
T PLN02789 304 PM-RRNYWAWR 313 (320)
T ss_pred cH-HHHHHHHH
Confidence 42 24566543
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=1.8e-08 Score=104.85 Aligned_cols=315 Identities=13% Similarity=-0.009 Sum_probs=183.7
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
...+..++.++...|+.+.+...+.++.+..+...+.....
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--------------------------------------- 46 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERA--------------------------------------- 46 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHH---------------------------------------
Confidence 46788888889889999999888888887655322110000
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH----HcCC
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE----VNDQ 407 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~ 407 (703)
.....+....|+++++.+.+++++... |. ...++.. +..+. ..+.
T Consensus 47 ------------------------~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~-----~~~a~~~-~~~~~~~~~~~~~ 95 (355)
T cd05804 47 ------------------------HVEALSAWIAGDLPKALALLEQLLDDY-PR-----DLLALKL-HLGAFGLGDFSGM 95 (355)
T ss_pred ------------------------HHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-----cHHHHHH-hHHHHHhcccccC
Confidence 000011122377788888888888763 32 2223331 22222 2444
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHH
Q psy6461 408 LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLY 487 (703)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
...+...+......+|... .....++.++...|++++|...++++++..|++ ...+..+
T Consensus 96 ~~~~~~~l~~~~~~~~~~~----~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-----------------~~~~~~l 154 (355)
T cd05804 96 RDHVARVLPLWAPENPDYW----YLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-----------------AWAVHAV 154 (355)
T ss_pred chhHHHHHhccCcCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------------cHHHHHH
Confidence 5555555554333344333 555566777788888888888888888888874 5566666
Q ss_pred HHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHc
Q psy6461 488 ADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY--AKTLYLLYAKLEEEH 565 (703)
Q Consensus 488 ~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~ 565 (703)
+.++...|++ ++|+..+++++...|.+. ....|..++.++...
T Consensus 155 a~i~~~~g~~-----------------------------------~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 155 AHVLEMQGRF-----------------------------------KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCH-----------------------------------HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 6666665554 888888888888776431 123567788888888
Q ss_pred CChHHHHHHHHHHhhccCcch-HHHHHHH-HHHHH-HHhcCchHHHHH---HHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q psy6461 566 GLARHAMAVYERATGAVLPEE-MFEMFNI-YIKKA-AEIYGIPKTRQI---YERAIESLPEEPTRQMCLKFAEMETKLGE 639 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~-~~~~~~~-~~~~~-~~~~~~~~A~~~---~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 639 (703)
|++++|..+|++++...|... ....... .+... ...|..+.+... ........|...........+......|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 888888888888876555211 1111011 11111 112323222222 22222222322222234567777778888
Q ss_pred HHHHHHHHHHHhcccCC---CC----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy6461 640 IDRARAIYAHCSQICDP---RV----TAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQ 692 (703)
Q Consensus 640 ~~~A~~~~~~a~~~~~~---~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 692 (703)
.+.|...++........ .. ...+....+-.....|+.++|.+.+..+..+.+.
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 88888888877654322 11 2334444555556778888888877666655533
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.29 E-value=6.7e-11 Score=104.07 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=57.5
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.|+++++.+|.+ |..++.... .|++++|...|++++..+|.+...|..++...... |++++|...|++
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------g~~~~A~~~y~~ 83 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML--------KEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH--------hhHHHHHHHHHH
Confidence 455555555543 333333333 55555555555555555555555555555544432 555555555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
+++.+|+++..|..+|.++...|++++|+..|+++++..|
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5555555555555555555555555555555555555555
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.28 E-value=4.3e-10 Score=109.25 Aligned_cols=192 Identities=11% Similarity=0.060 Sum_probs=137.1
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY---KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF 101 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 101 (703)
.++...+.+...+..+. .|+++.|...|+++++.+|.++ ..|...+..+... |++++|...|+++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~--------~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS--------GDYAEAIAAADRFIRL 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHH
Confidence 44667788888888776 8999999999999999999876 4666666665443 7899999999999999
Q ss_pred cCCCHH---HHHHHHHHHHhc--------cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 102 MHKMPR---IWLDYGRFLMDQ--------HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 102 ~p~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
.|+++. .|...+.++... |+.++|.+.|++++...|.+ ...+..+.......+. +..
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~~~~~~~~-------~~~--- 167 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS--EYAPDAKKRMDYLRNR-------LAG--- 167 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHH-------HHH---
Confidence 988776 577777777665 77888999999999988853 4444433322111100 000
Q ss_pred hCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccc
Q psy6461 171 LFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250 (703)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (703)
.......++...|++.+|+..|..+++. +|+.. .
T Consensus 168 ----~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------------~p~~~------------------~ 201 (235)
T TIGR03302 168 ----KELYVARFYLKRGAYVAAINRFETVVEN------------------------YPDTP------------------A 201 (235)
T ss_pred ----HHHHHHHHHHHcCChHHHHHHHHHHHHH------------------------CCCCc------------------c
Confidence 0012345567889999999888877632 22110 1
Q ss_pred hhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcC
Q psy6461 251 LGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283 (703)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 283 (703)
..++|..+|..+...|++++|...++.+....|
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 246899999999999999999999988776655
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=7.2e-09 Score=107.77 Aligned_cols=280 Identities=13% Similarity=-0.019 Sum_probs=175.2
Q ss_pred CCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcc
Q psy6461 350 NPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVE 427 (703)
Q Consensus 350 ~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 427 (703)
+|+.+..+...+.++. |+...+...+.++....++.. .........+..+...|++++|...+++++...|.+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~- 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA---TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL- 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-
Confidence 5777777766665443 667777777777666543321 2234455556667777888888888888887777765
Q ss_pred hHHHHHHH---HHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHh
Q psy6461 428 DLATVWCE---WAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGI 504 (703)
Q Consensus 428 ~~~~~~~~---~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al 504 (703)
..+.. +.......+....+...+.......|.. ...+...+.++...|
T Consensus 78 ---~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~~a~~~~~~G--------- 128 (355)
T cd05804 78 ---LALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDY-----------------WYLLGMLAFGLEEAG--------- 128 (355)
T ss_pred ---HHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCc-----------------HHHHHHHHHHHHHcC---------
Confidence 33331 1111122344455555554433333331 333334444444444
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 505 ALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 505 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
++++|...++++++..|++ +..+..++.++...|++++|+..+++++...|.
T Consensus 129 --------------------------~~~~A~~~~~~al~~~p~~--~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 129 --------------------------QYDRAEEAARRALELNPDD--AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred --------------------------CHHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 4599999999999999998 568999999999999999999999999998874
Q ss_pred ch--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHH----HHHHHHHHcCCHHHHHHH---HHHHhcccC
Q psy6461 585 EE--MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCL----KFAEMETKLGEIDRARAI---YAHCSQICD 655 (703)
Q Consensus 585 ~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~----~~a~~~~~~g~~~~A~~~---~~~a~~~~~ 655 (703)
+. ....|.....+....|++++|..+|++++...|..... ... .........|....+..+ ........+
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~ 259 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPA-LDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFP 259 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChH-HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcC
Confidence 32 23455567777888999999999999998776632221 111 222333345654444444 222211111
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy6461 656 PRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQA 691 (703)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 691 (703)
.........+........|..+.+...++..+....
T Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 260 DHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 121233334666777777999999998876655443
No 97
>KOG1840|consensus
Probab=99.25 E-value=1.5e-09 Score=112.91 Aligned_cols=257 Identities=14% Similarity=0.150 Sum_probs=178.0
Q ss_pred cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHh--------CCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC-
Q psy6461 102 MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA--------LPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF- 172 (703)
Q Consensus 102 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~- 172 (703)
.|.-......++..+..+|+++.|..++.+|++. +|. .......++.++...+++.+|+.+|++++.+-
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3555566667899999999999999999999998 442 23344557889999999999999999999752
Q ss_pred ----CCCHH---HHH---HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHh
Q psy6461 173 ----PEDAE---DYI---EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRG 242 (703)
Q Consensus 173 ----p~~~~---~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (703)
++++. .+. .++...|++++|...++.+++.-. . ++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~--------------~---~~~~~--------------- 320 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE--------------K---LLGAS--------------- 320 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH--------------H---hhccC---------------
Confidence 33332 233 346789999999999999874211 0 00011
Q ss_pred HhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchH
Q psy6461 243 GLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDI 322 (703)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 322 (703)
++........++..+...+++++|..+|+++++...+..
T Consensus 321 -----~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~------------------------------------ 359 (508)
T KOG1840|consen 321 -----HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP------------------------------------ 359 (508)
T ss_pred -----hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc------------------------------------
Confidence 112235677889999999999999999999887532110
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCcc--CCchhHHHHHH
Q psy6461 323 ELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLA--VGKLHTLWIEF 398 (703)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~--~~~~~~~~~~~ 398 (703)
-..+|.-......++.++ .|++.+|.+.|++|+.......- ..........+
T Consensus 360 ------------------------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 360 ------------------------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ------------------------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 001111111111222222 29999999999999987422111 11223455667
Q ss_pred HHHHHHcCChHHHHHHHHHhhcc----CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLV----PYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
|..+.+.+.+.+|..+|.++..+ .|.++ +....+..++.+|.+.|++++|.++.++++.
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~-~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP-DVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88888999999999999887665 34443 3347899999999999999999999988773
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.25 E-value=1.8e-10 Score=107.02 Aligned_cols=123 Identities=14% Similarity=0.159 Sum_probs=76.3
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HhccC-
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL-MDQHK- 121 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~- 121 (703)
++.+++...++++++.+|++.+.|..++..+... |++++|...|+++++..|+++.++..++.++ ...|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~--------g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR--------NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Confidence 4455666666666666666666666666655442 5666666666666666666666666666653 44454
Q ss_pred -hHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 122 -ITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 122 -~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
.++|+.+++++++.+| .+..++..++..+.+.|++++|+..|+++++.+|.+.
T Consensus 125 ~~~~A~~~l~~al~~dP--~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 125 MTPQTREMIDKALALDA--NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred CcHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3666666666666666 3455666666666666666666666666666665543
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.24 E-value=1.4e-10 Score=102.11 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=104.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHH
Q psy6461 50 NTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVF 129 (703)
Q Consensus 50 ~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 129 (703)
..+|+++++.+|++ |...+..... .|++++|...|++++..+|.++.+|..+|.++...|++++|...|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~--------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQ--------EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 37899999999986 3344444333 389999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 130 DRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 130 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
++++..+| .++..|..++.++...|++++|+..|+++++..|++...+
T Consensus 82 ~~Al~l~p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 82 GHALMLDA--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999 5689999999999999999999999999999999997655
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.24 E-value=1.8e-10 Score=107.11 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=106.9
Q ss_pred CCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchh--HHHH
Q psy6461 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPS--YEDV 91 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~A 91 (703)
+.-..++++++.+|.+.+.|..++..+. .|+++.|...|+++++..|++..+|..++...... .|+ .++|
T Consensus 57 ~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~-------~g~~~~~~A 129 (198)
T PRK10370 57 AQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQ-------AGQHMTPQT 129 (198)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------cCCCCcHHH
Confidence 3346899999999999999999999998 99999999999999999999999999999854222 244 5899
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 92 NNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 92 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
..+++++++.+|+++.++..++..+...|++++|...++++++..|.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999994
No 101
>KOG1840|consensus
Probab=99.24 E-value=2.1e-09 Score=111.86 Aligned_cols=259 Identities=14% Similarity=0.183 Sum_probs=178.4
Q ss_pred hcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCC--ccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-
Q psy6461 348 RQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPK--LAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP- 422 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~- 422 (703)
..+|.-.......+..+ .|+++.|...++.|++.+... ...+........+|.+|...+++.+|..+|++++.+.
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34455555555555443 399999999999999872110 0111233444568999999999999999999999872
Q ss_pred ----CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChh
Q psy6461 423 ----YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFK 498 (703)
Q Consensus 423 ----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (703)
+.++ ....++..++.+|...|++++|...+++|+++....... ..+++-..+..+....
T Consensus 273 ~~~G~~h~-~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~------------~~~~v~~~l~~~~~~~---- 335 (508)
T KOG1840|consen 273 EVFGEDHP-AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA------------SHPEVAAQLSELAAIL---- 335 (508)
T ss_pred HhcCCCCH-HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc------------ChHHHHHHHHHHHHHH----
Confidence 3443 556789999999999999999999999998765321000 0122222222111111
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhC-----CCc-chHHHHHHHHHHHHHcCChHHHH
Q psy6461 499 AYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC-----PPR-YAKTLYLLYAKLEEEHGLARHAM 572 (703)
Q Consensus 499 ~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~-~~~~~~~~~a~~~~~~g~~~~A~ 572 (703)
. ..+++++|..++++++++. +++ .....+..+|.++...|++++|+
T Consensus 336 --------------------------~--~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 336 --------------------------Q--SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred --------------------------H--HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence 1 1345688888888887753 222 12468999999999999999999
Q ss_pred HHHHHHhhccCc-----ch--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHh----CCCcchH-HHHHHHHHHHHHcCCH
Q psy6461 573 AVYERATGAVLP-----EE--MFEMFNIYIKKAAEIYGIPKTRQIYERAIES----LPEEPTR-QMCLKFAEMETKLGEI 640 (703)
Q Consensus 573 ~~~~~al~~~p~-----~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~-~~~~~~a~~~~~~g~~ 640 (703)
.+|++|++.... +. ...+|..-... .+.+.+.+|..+|.+++-. .|+++.+ -.+.+++..|.++|++
T Consensus 388 ~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~-~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 388 ELYKKAIQILRELLGKKDYGVGKPLNQLAEAY-EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred HHHHHHHHHHHhcccCcChhhhHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 999999987521 11 12344433333 5678889999999998864 5666543 3778999999999999
Q ss_pred HHHHHHHHHHhc
Q psy6461 641 DRARAIYAHCSQ 652 (703)
Q Consensus 641 ~~A~~~~~~a~~ 652 (703)
+.|..+.++++.
T Consensus 467 e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 467 EAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
No 102
>KOG0128|consensus
Probab=99.21 E-value=9.3e-08 Score=100.94 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=93.6
Q ss_pred CCCchhhHHHHhcCCCChHHHHHHHHHhh----cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHH
Q psy6461 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKK----NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYE 89 (703)
Q Consensus 14 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~----~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (703)
.+.+..-...-...|.++..|+.|+.-.. .++...+..+|+++| .+-+++.+|..++++....... ...+++++
T Consensus 130 ~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~-~~~~~d~k 207 (881)
T KOG0128|consen 130 EKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNV-AKKSEDYK 207 (881)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHhcccc-ccccccch
Confidence 34445566667789999999999987655 577888999999998 4678999999999998765432 23457899
Q ss_pred HHHHHHHHHHHhcC----CCHHHHHHHHHHHHh---ccChHHHHHHHHHHHHhCC
Q psy6461 90 DVNNTFERSLVFMH----KMPRIWLDYGRFLMD---QHKITQTRHVFDRALRALP 137 (703)
Q Consensus 90 ~A~~~~~~al~~~p----~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p 137 (703)
..+.+|+++++... .-..+|.+|..++.. .-..++...+|.+.|. .|
T Consensus 208 ~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~-~~ 261 (881)
T KOG0128|consen 208 KERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK-QP 261 (881)
T ss_pred hhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-cc
Confidence 99999999998853 345888888877654 3445778888988887 44
No 103
>KOG2376|consensus
Probab=99.21 E-value=3.3e-07 Score=93.34 Aligned_cols=425 Identities=15% Similarity=0.099 Sum_probs=227.9
Q ss_pred HHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHH--HhcCCHH
Q psy6461 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYL--SSIERLD 190 (703)
Q Consensus 113 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~--~~~~~~~ 190 (703)
++.....|++++|.....+.|...|++ ......-.-.....+.++.|.++.+.-....-.+.-.+-..| .+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd--~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDD--EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCc--HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHH
Confidence 455566788999999999999998853 333333333344667788877554443322112211122222 4677888
Q ss_pred HHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHH
Q psy6461 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFER 270 (703)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (703)
+|++.++.. +. ...-+....+.++.+.|++++
T Consensus 97 ealk~~~~~-~~-----------------------------------------------~~~~ll~L~AQvlYrl~~yde 128 (652)
T KOG2376|consen 97 EALKTLKGL-DR-----------------------------------------------LDDKLLELRAQVLYRLERYDE 128 (652)
T ss_pred HHHHHHhcc-cc-----------------------------------------------cchHHHHHHHHHHHHHhhHHH
Confidence 888877622 10 011255666888889999999
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcC
Q psy6461 271 ARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQN 350 (703)
Q Consensus 271 A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (703)
|.++|+.+++...+..+- .+ +. .+-.+
T Consensus 129 aldiY~~L~kn~~dd~d~------------~~------------------------r~-nl~a~---------------- 155 (652)
T KOG2376|consen 129 ALDIYQHLAKNNSDDQDE------------ER------------------------RA-NLLAV---------------- 155 (652)
T ss_pred HHHHHHHHHhcCCchHHH------------HH------------------------HH-HHHHH----------------
Confidence 999999988865432110 00 00 00000
Q ss_pred CCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-------C
Q psy6461 351 PHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP-------Y 423 (703)
Q Consensus 351 p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~ 423 (703)
+... ... ..+.+... +..+.+..++.|..+...|++.+|+++++++++++ .
T Consensus 156 ---------------~a~l-~~~-~~q~v~~v-----~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d 213 (652)
T KOG2376|consen 156 ---------------AAAL-QVQ-LLQSVPEV-----PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED 213 (652)
T ss_pred ---------------HHhh-hHH-HHHhccCC-----CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc
Confidence 0000 000 11111111 12345667778888899999999999999994432 1
Q ss_pred CCc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh--
Q psy6461 424 TKV----EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF-- 497 (703)
Q Consensus 424 ~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 497 (703)
.+. .++..+..+++-++...|+.++|..+|...++.+|.|.. .+...--.+-...++.
T Consensus 214 ~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~----------------~~Av~~NNLva~~~d~~~ 277 (652)
T KOG2376|consen 214 TNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP----------------SLAVAVNNLVALSKDQNY 277 (652)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch----------------HHHHHhcchhhhcccccc
Confidence 221 123456777777888899999999999999999887631 1111100010001110
Q ss_pred --------------hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q psy6461 498 --------------KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEE 563 (703)
Q Consensus 498 --------------~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 563 (703)
.+-+.++..+....--.++..-+ ++..+ .+..+.+++...+--...|....+.+....-..
T Consensus 278 ~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~--lL~l~-tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~-- 352 (652)
T KOG2376|consen 278 FDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA--LLALF-TNKMDQVRELSASLPGMSPESLFPILLQEATKV-- 352 (652)
T ss_pred CchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHH-hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHH--
Confidence 00111111110000000000000 11111 223344444433322233333222222222222
Q ss_pred HcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh----CCCcchHHHHHHHHH-HHHHcC
Q psy6461 564 EHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES----LPEEPTRQMCLKFAE-METKLG 638 (703)
Q Consensus 564 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~a~-~~~~~g 638 (703)
+.....+|..++....+.+|.++. .+....++..+..|++..|..+++..+.. .++-.+.+..+.++. ++.+.+
T Consensus 353 ~~~~~~ka~e~L~~~~~~~p~~s~-~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 353 REKKHKKAIELLLQFADGHPEKSK-VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIK 431 (652)
T ss_pred HHHHHhhhHHHHHHHhccCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhcc
Confidence 222678889999999999998743 35566677777789999999999833321 111111123344444 344555
Q ss_pred CHHHHHHHHHHHhcc-----cCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 639 EIDRARAIYAHCSQI-----CDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 639 ~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
+.+.|..++..|+.- .....-..+|...+.|+..+|+.+++..+++
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 544444444444331 0111146788889999999999999988874
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.19 E-value=7.9e-08 Score=93.47 Aligned_cols=295 Identities=13% Similarity=0.065 Sum_probs=211.2
Q ss_pred hhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHH
Q psy6461 362 RLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELEL 441 (703)
Q Consensus 362 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 441 (703)
.+.+|++..|.+...+.-+.- + ...-.++.-+..--..|+.++|-.++.++.+..++.. -.+.+..+++..
T Consensus 94 ~l~eG~~~qAEkl~~rnae~~-e-----~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~---l~v~ltrarlll 164 (400)
T COG3071 94 KLFEGDFQQAEKLLRRNAEHG-E-----QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT---LAVELTRARLLL 164 (400)
T ss_pred HHhcCcHHHHHHHHHHhhhcC-c-----chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch---HHHHHHHHHHHH
Confidence 345599999999988865541 1 2233455556666689999999999999999844332 256778888899
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcC------CCCc----
Q psy6461 442 RAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALF------KWPY---- 511 (703)
Q Consensus 442 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~------~~~~---- 511 (703)
..|+...|+.-++++.+..|.+ +.+.....+.+...|+++-....+... .++.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~-----------------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l 227 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRH-----------------PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL 227 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCC-----------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH
Confidence 9999999999999999999985 788888888888888872222222211 1111
Q ss_pred hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHH
Q psy6461 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMF 591 (703)
Q Consensus 512 ~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 591 (703)
....|.+.+..... .+..+.-....++.-...-++ +.+-+.++.-+...|+.++|.++.+.+++..-++. +
T Consensus 228 e~~a~~glL~q~~~---~~~~~gL~~~W~~~pr~lr~~--p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L- 298 (400)
T COG3071 228 EQQAWEGLLQQARD---DNGSEGLKTWWKNQPRKLRND--PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L- 298 (400)
T ss_pred HHHHHHHHHHHHhc---cccchHHHHHHHhccHHhhcC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-
Confidence 22344444432211 111222222333222222223 56889999999999999999999999999876542 2
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
..++... +-++...-.+..++.++..|++|. ++..++.++.+.+.+.+|...++.|++.. ++ ..-|+..+....
T Consensus 299 ~~~~~~l-~~~d~~~l~k~~e~~l~~h~~~p~--L~~tLG~L~~k~~~w~kA~~~leaAl~~~-~s--~~~~~~la~~~~ 372 (400)
T COG3071 299 CRLIPRL-RPGDPEPLIKAAEKWLKQHPEDPL--LLSTLGRLALKNKLWGKASEALEAALKLR-PS--ASDYAELADALD 372 (400)
T ss_pred HHHHhhc-CCCCchHHHHHHHHHHHhCCCChh--HHHHHHHHHHHhhHHHHHHHHHHHHHhcC-CC--hhhHHHHHHHHH
Confidence 2222222 246777888899999999999997 99999999999999999999999999884 33 678889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhhcc
Q psy6461 672 THGNEDTMREMLRIKRSVQAQYNTQV 697 (703)
Q Consensus 672 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 697 (703)
+.|....+..+.+.+-.+-.+++.++
T Consensus 373 ~~g~~~~A~~~r~e~L~~~~~~~~~s 398 (400)
T COG3071 373 QLGEPEEAEQVRREALLLTRQPNLPS 398 (400)
T ss_pred HcCChHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999877777666666543
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=1.6e-07 Score=99.24 Aligned_cols=165 Identities=17% Similarity=0.133 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchH
Q psy6461 434 CEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIF 513 (703)
Q Consensus 434 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~ 513 (703)
+.+++.+...|++++|+..+++|+...|.. ++++..-+.++...|++
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-----------------~ely~~KarilKh~G~~---------------- 244 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL-----------------VELYMTKARILKHAGDL---------------- 244 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----------------HHHHHHHHHHHHHCCCH----------------
Confidence 333555555666666666666666666652 55555555555555544
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC--cchHHHHH
Q psy6461 514 DIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL--PEEMFEMF 591 (703)
Q Consensus 514 ~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 591 (703)
++|...++.|-++++.+ --+-...+.+..+.|.+++|.+++....+... ...-..+.
T Consensus 245 -------------------~~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 245 -------------------KEAAEAMDEARELDLAD--RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred -------------------HHHHHHHHHHHhCChhh--HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 55666666666665554 33445555555566666666655554443331 11000000
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHH--HHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHH---HH
Q psy6461 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMC--LKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWA---AW 666 (703)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~ 666 (703)
+ +| ...|..+.+.|++..|.+.|....++... +.+ .+
T Consensus 304 -------------------------------c--~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~-----~~~DQfDF 345 (517)
T PF12569_consen 304 -------------------------------C--MWFETECAEAYLRQGDYGLALKRFHAVLKHFDD-----FEEDQFDF 345 (517)
T ss_pred -------------------------------H--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HhcccccH
Confidence 1 33 34456666778888888887777665321 111 23
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 667 KSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 667 ~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
-.++..-|++..+.+|++..-++.
T Consensus 346 H~Yc~RK~t~r~Y~~~L~~ed~l~ 369 (517)
T PF12569_consen 346 HSYCLRKMTLRAYVDMLRWEDKLR 369 (517)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhh
Confidence 345666677777777776555544
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.17 E-value=3e-09 Score=103.35 Aligned_cols=202 Identities=12% Similarity=-0.033 Sum_probs=144.2
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
...+.++..|..+...|+++.|+..|++++...|.++ .....++.++..+...|++++|+..|+++++..|++..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---- 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD---- 105 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc----
Confidence 4577889999999999999999999999999988775 22357899999999999999999999999999997510
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
....++..+.++...... .....++.++|.+.|+++++..|++
T Consensus 106 ----------~~~a~~~~g~~~~~~~~~---------------------------~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 106 ----------ADYAYYLRGLSNYNQIDR---------------------------VDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred ----------hHHHHHHHHHHHHHhccc---------------------------ccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 112344444444322100 0001134589999999999999998
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc-hHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP-TRQMCL 628 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~ 628 (703)
...+..+..+....+.. . .-.......+...|++.+|...|++++...|+++ ...+|.
T Consensus 149 --~~~~~a~~~~~~~~~~~-------~------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~ 207 (235)
T TIGR03302 149 --EYAPDAKKRMDYLRNRL-------A------------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALA 207 (235)
T ss_pred --hhHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHH
Confidence 33343332221110000 0 0011233445668999999999999999999875 345899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 629 KFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
..+..+.+.|++++|..+++......
T Consensus 208 ~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 208 RLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999988876553
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.16 E-value=1.6e-09 Score=118.57 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=134.2
Q ss_pred HHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh
Q psy6461 23 EILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF 101 (703)
Q Consensus 23 ~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 101 (703)
.....|.++++...+++... .|..++|..+++++++.+|++...+..++..+.++ +.+++|...+++++..
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~--------~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ--------QGIEAGRAEIELYFSG 149 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh--------ccHHHHHHHHHHHhhc
Confidence 34567899999999999998 99999999999999999999999999999988765 7899999999999999
Q ss_pred cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 102 MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIE 181 (703)
Q Consensus 102 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 181 (703)
.|+++.....++.++...|++++|..+|++++..+| ..+.+|..++..+.+.|+.++|...|++++.....-...|..
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 999999999999999999999999999999999787 458899999999999999999999999999876544444444
Q ss_pred HH
Q psy6461 182 YL 183 (703)
Q Consensus 182 ~~ 183 (703)
++
T Consensus 228 ~~ 229 (694)
T PRK15179 228 RL 229 (694)
T ss_pred HH
Confidence 44
No 108
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=2.5e-07 Score=90.13 Aligned_cols=285 Identities=13% Similarity=0.115 Sum_probs=163.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|+|.+|.+...++-+..+...-.++.-+......|+.+.+-+++.++-+.-|++ .-......+++...+|++..|+.-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-TLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhCCCchhHHHHH
Confidence 556666666666555545444445555555555566666666666665543321 1222233344555555566666666
Q ss_pred HHHHhhCCCCHHHH---HHHHHhcCCHHHHHHHHHHhhccccccccc-CCchhhhHHHHHHHHhcCccccccccHHHHHH
Q psy6461 166 RRYLKLFPEDAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKH-GKSNHQLWNELCEMISQNPDKIRSLNVDAIIR 241 (703)
Q Consensus 166 ~~~l~~~p~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 241 (703)
.+.++..|.+.... .+.+...|++.+..+++.++.+..-+.... ..-....|.....-.. ++. ..+.+.
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~-~~~-----~~~gL~- 249 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR-DDN-----GSEGLK- 249 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh-ccc-----cchHHH-
Confidence 66666666665532 345556666666555555543211100000 0000011111111000 000 011111
Q ss_pred hHhhhhc---cchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q psy6461 242 GGLRRYT---DQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSE 318 (703)
Q Consensus 242 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 318 (703)
..-+..| ...+++-..++.-+.++|+.++|.++.+.+++..-+.. +...+.
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~---------------------- 303 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP---------------------- 303 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh----------------------
Confidence 0111111 12346778889999999999999999999998643321 110000
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHH
Q psy6461 319 EDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEF 398 (703)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (703)
... -++...-++..++.+...+ ..+.++..+
T Consensus 304 -----------------------------~l~--------------~~d~~~l~k~~e~~l~~h~------~~p~L~~tL 334 (400)
T COG3071 304 -----------------------------RLR--------------PGDPEPLIKAAEKWLKQHP------EDPLLLSTL 334 (400)
T ss_pred -----------------------------hcC--------------CCCchHHHHHHHHHHHhCC------CChhHHHHH
Confidence 000 1455556666677776632 356799999
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
|.++.+++.+.+|...|+.+++..|+. .-|..++..+.+.|++.+|..+++.++.
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~~~s~-----~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKLRPSA-----SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCCh-----hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999987654 6788999999999999999999999874
No 109
>KOG3785|consensus
Probab=99.13 E-value=5.2e-06 Score=79.36 Aligned_cols=185 Identities=14% Similarity=0.136 Sum_probs=121.3
Q ss_pred HhhcCchhHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 40 HKKNAPKAIINTIYERSLKELP---GSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 40 ~~~~~~~~~a~~~~e~al~~~P---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
+....|+..|++.++-.+..+- ++.++|+.+..+++ |++++|...|.-+.....-+..+|..++-+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL----------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL----------GDYEEALNVYTFLMNKDDAPAELGVNLACCK 101 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh----------ccHHHHHHHHHHHhccCCCCcccchhHHHHH
Confidence 3336788999999888875544 47799999999865 8899999999988877655779999999999
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKL 196 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~ 196 (703)
+-.|.+.+|..+..++-+ .|- --..+..+-.+.|+ ++-+-.|...++--.++--.+.+.-...-.|.+|+.+|
T Consensus 102 FyLg~Y~eA~~~~~ka~k-~pL-----~~RLlfhlahklnd-Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPK-TPL-----CIRLLFHLAHKLND-EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHHHHHHhhCCC-ChH-----HHHHHHHHHHHhCc-HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999888643 332 11222233334444 34444444444322111112333334455688899998
Q ss_pred HHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHH
Q psy6461 197 AYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYE 276 (703)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 276 (703)
..++. .+|+-+ .+-..++..|.+..-++-+.++++
T Consensus 175 krvL~------------------------dn~ey~---------------------alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 175 KRVLQ------------------------DNPEYI---------------------ALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHHh------------------------cChhhh---------------------hhHHHHHHHHHhcchhhhHHHHHH
Confidence 88763 122110 122334555666777777888888
Q ss_pred HHHhhcCCcc
Q psy6461 277 EAIQTVTTVR 286 (703)
Q Consensus 277 ~~l~~~~~~~ 286 (703)
--+...|++.
T Consensus 210 vYL~q~pdSt 219 (557)
T KOG3785|consen 210 VYLRQFPDST 219 (557)
T ss_pred HHHHhCCCcH
Confidence 8888877654
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.11 E-value=2.9e-09 Score=93.35 Aligned_cols=112 Identities=8% Similarity=0.074 Sum_probs=91.3
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.|++++..+|.+......++.... .+++++|...|+++++.+|.++..|..++.+.... |++++|...|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML--------KEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 467888888888877777777777 88888888888888888888888888887776554 778888888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
+++.+|+++..|..++.++...|+.++|...|+++++..|.
T Consensus 77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 88888888888888888888888888888888888888884
No 111
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=99.11 E-value=2.2e-09 Score=107.98 Aligned_cols=151 Identities=24% Similarity=0.386 Sum_probs=123.9
Q ss_pred CCCchhhHHHHhcCCCChHHHHHHHHHhh-cC------------chhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy6461 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKK-NA------------PKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80 (703)
Q Consensus 14 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~------------~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~ 80 (703)
.++..+|++.++.+|.|.++|+.++.+.. .- -.++..++|++||+.+|++..+|+.|++.....
T Consensus 2 ~~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~--- 78 (321)
T PF08424_consen 2 RKRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV--- 78 (321)
T ss_pred chHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---
Confidence 34567999999999999999999998886 21 146778999999999999999999999876543
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---cChHHHHHHHHHHHHhCCccc----------------c
Q psy6461 81 KVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ---HKITQTRHVFDRALRALPITQ----------------H 141 (703)
Q Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~----------------~ 141 (703)
.+.+...+.+++++..+|+++.+|..|+.+.... .+++..+.+|.++|+...... .
T Consensus 79 -----~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~ 153 (321)
T PF08424_consen 79 -----WDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFM 153 (321)
T ss_pred -----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHH
Confidence 3567788999999999999999999999998773 478999999999998654311 1
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q psy6461 142 HRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172 (703)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 172 (703)
..+...++.|....|..+.|+.+++..++.+
T Consensus 154 l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 154 LYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 2345556778888899999999999988875
No 112
>KOG0550|consensus
Probab=99.10 E-value=1.6e-08 Score=98.15 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
.|-.-|.-..++|++..|...|..+|.++|++......+|...+.+..+.|+..+|+...+.|+.++|.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 344456666778999999999999999999998888889999999999999999999999999999874
No 113
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=3.5e-06 Score=89.30 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=83.8
Q ss_pred CCCcHHHHHHH--Hhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC
Q psy6461 350 NPHNVLEWHKR--VRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK 425 (703)
Q Consensus 350 ~p~~~~~~~~~--~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 425 (703)
.|....+|..+ ++++. |+.++|++..++||... | ..+++++.-|+++...|++++|...++.|-.+++.+
T Consensus 188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-P-----t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-P-----TLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-C-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 34445566443 55543 99999999999999984 3 468899999999999999999999999999998877
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 426 VEDLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
. .+-...+..+++.|+.++|.+++......+
T Consensus 262 R----yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 262 R----YINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred H----HHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 5 777778888999999999999998876655
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.09 E-value=2.8e-08 Score=109.58 Aligned_cols=236 Identities=10% Similarity=0.000 Sum_probs=158.2
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCccccc
Q psy6461 389 GKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHD 468 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 468 (703)
+.+..+|..++..+...|++++|..+.+.++..+|+.+ .+|+..|-++.+.++.+.+..+ +++...+.+-.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i----~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~--- 98 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI----SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK--- 98 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce----ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc---
Confidence 45788999999999999999999999999999999998 8888888899999999988777 77777665411
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 469 EAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
..+-..+.......+. +-.+...++ ..+. .+|+.++|.++|+++++.+|+
T Consensus 99 ------------~~~ve~~~~~i~~~~~---------------~k~Al~~LA-~~Yd--k~g~~~ka~~~yer~L~~D~~ 148 (906)
T PRK14720 99 ------------WAIVEHICDKILLYGE---------------NKLALRTLA-EAYA--KLNENKKLKGVWERLVKADRD 148 (906)
T ss_pred ------------hhHHHHHHHHHHhhhh---------------hhHHHHHHH-HHHH--HcCChHHHHHHHHHHHhcCcc
Confidence 1111111111110110 001111111 1111 245679999999999999999
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH----
Q psy6461 549 RYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR---- 624 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---- 624 (703)
+ +.+...+|.++... +.++|+.++.+|+..+- ..+++..+..+|++.+...|++...
T Consensus 149 n--~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i----------------~~kq~~~~~e~W~k~~~~~~~d~d~f~~i 209 (906)
T PRK14720 149 N--PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI----------------KKKQYVGIEEIWSKLVHYNSDDFDFFLRI 209 (906)
T ss_pred c--HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH----------------hhhcchHHHHHHHHHHhcCcccchHHHHH
Confidence 9 67889999998888 99999999999987632 2335666666666666666655432
Q ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHH---HHHHHHHcCCHHHHHHHH
Q psy6461 625 --------------QMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAA---WKSFEITHGNEDTMREML 683 (703)
Q Consensus 625 --------------~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~ 683 (703)
.++...-..+....++++++.+++++++.. +.+.....+. |..-+..+-.++++.++.
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s 284 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYKEKYKDHSLLEDYLKMS 284 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHHHHccCcchHHHHHHHh
Confidence 123333345556778999999999999995 4433333332 333333334566666664
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.08 E-value=1.6e-08 Score=111.50 Aligned_cols=268 Identities=10% Similarity=0.108 Sum_probs=165.3
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhC
Q psy6461 57 LKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136 (703)
Q Consensus 57 l~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 136 (703)
....|.+.+.|..++..+... +++++|.++++.+++.+|+++.+|+..|.++.+.+++..+..+ +++...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~--------~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSE--------NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 456789999999999887554 8899999999999999999999999999999998888887777 777766
Q ss_pred CcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCch
Q psy6461 137 PITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSN 213 (703)
Q Consensus 137 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (703)
+.+ .-|.....++...+ ..|++..++ ...|...|+.++|...+++++..
T Consensus 94 ~~~---~~~~~ve~~~~~i~--------------~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----------- 145 (906)
T PRK14720 94 SQN---LKWAIVEHICDKIL--------------LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA----------- 145 (906)
T ss_pred ccc---cchhHHHHHHHHHH--------------hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------
Confidence 642 11322222222211 123333222 23345667777777776666532
Q ss_pred hhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHH
Q psy6461 214 HQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFD 293 (703)
Q Consensus 214 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~ 293 (703)
+|. ...+.+.+|-.|... ++++|+..+.+++...-+..++..+..
T Consensus 146 -------------D~~---------------------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e 190 (906)
T PRK14720 146 -------------DRD---------------------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEE 190 (906)
T ss_pred -------------Ccc---------------------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 121 135677888888877 888999999888875322111111111
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHH
Q psy6461 294 AYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIR 373 (703)
Q Consensus 294 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~ 373 (703)
-|.. .+..+|++++.++...
T Consensus 191 ~W~k------------------------------------------------~~~~~~~d~d~f~~i~------------ 210 (906)
T PRK14720 191 IWSK------------------------------------------------LVHYNSDDFDFFLRIE------------ 210 (906)
T ss_pred HHHH------------------------------------------------HHhcCcccchHHHHHH------------
Confidence 1110 1233344333332222
Q ss_pred HHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-----------
Q psy6461 374 TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR----------- 442 (703)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----------- 442 (703)
++....... +....++..+-..|...+++++++.+++.+|+.+|+|. .....++..+..
T Consensus 211 --~ki~~~~~~----~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~----~a~~~l~~~y~~kY~~~~~~ee~ 280 (906)
T PRK14720 211 --RKVLGHREF----TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN----KAREELIRFYKEKYKDHSLLEDY 280 (906)
T ss_pred --HHHHhhhcc----chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch----hhHHHHHHHHHHHccCcchHHHH
Confidence 222211110 12344555566677788899999999999999998887 444444444422
Q ss_pred -------c--CCHHHHHHHHHHHhcCCCCCcccc
Q psy6461 443 -------A--GQEEAALRLMARATATPARPVAYH 467 (703)
Q Consensus 443 -------~--~~~~~A~~~~~~a~~~~p~~~~~~ 467 (703)
+ .++..|+.-|++-+...+.+.-++
T Consensus 281 l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 281 LKMSDIGNNRKPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred HHHhccccCCccHHHHHHHHHHHeeecCCCEEEE
Confidence 1 346778888888888777765333
No 116
>KOG3060|consensus
Probab=99.04 E-value=1.6e-07 Score=85.69 Aligned_cols=195 Identities=12% Similarity=0.034 Sum_probs=148.8
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHH---HHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFY---EVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR 442 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 442 (703)
.+.++.++.+...+...+.. .. -.+.|..+-++. ...|+.+-|...+++.....|++. .+-...|..+--
T Consensus 26 rnseevv~l~~~~~~~~k~~-~~--g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~----RV~~lkam~lEa 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG-AL--GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK----RVGKLKAMLLEA 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc-cc--CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHH
Confidence 45677777777766553222 11 134555554443 468899999999999888889887 777778887878
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHH
Q psy6461 443 AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522 (703)
Q Consensus 443 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~ 522 (703)
.|++++|.++|++.++-+|.+ ...+-.-+.+...+|.
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~-----------------~v~~KRKlAilka~GK-------------------------- 135 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTD-----------------TVIRKRKLAILKAQGK-------------------------- 135 (289)
T ss_pred hhchhhHHHHHHHHhccCcch-----------------hHHHHHHHHHHHHcCC--------------------------
Confidence 999999999999999999985 3444444444455444
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH--
Q psy6461 523 FLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE-- 600 (703)
Q Consensus 523 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-- 600 (703)
.-+|.+-+..-++.++.+ .++|..++.+|...|++++|.-.+|..+-..|.+ +..+..|.+...-
T Consensus 136 ---------~l~aIk~ln~YL~~F~~D--~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n--~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 136 ---------NLEAIKELNEYLDKFMND--QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN--PLYFQRLAEVLYTQG 202 (289)
T ss_pred ---------cHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHh
Confidence 368888899999999998 7899999999999999999999999999999987 4455555555433
Q ss_pred -hcCchHHHHHHHHHHHhCCCcch
Q psy6461 601 -IYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 601 -~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
..++.-||++|.++++.+|.+..
T Consensus 203 g~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred hHHHHHHHHHHHHHHHHhChHhHH
Confidence 45678899999999999996544
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.03 E-value=4e-09 Score=92.50 Aligned_cols=117 Identities=14% Similarity=0.130 Sum_probs=105.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHH
Q psy6461 51 TIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFD 130 (703)
Q Consensus 51 ~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 130 (703)
+.|+++++..|++...-..++...... |++++|...|++++..+|.++.+|..++.++...|++++|...|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--------GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999988777777766553 889999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 131 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+++...|. ....|..++.++...|+++.|+..|+++++.+|++..
T Consensus 76 ~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 76 LAAALDPD--DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 99999994 5788888899999999999999999999999998864
No 118
>KOG1128|consensus
Probab=99.02 E-value=2.6e-08 Score=103.72 Aligned_cols=220 Identities=14% Similarity=0.131 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
...+-..++..+...|-...|..+|++. +.|...+.+|...|+..+|..+..+-++.+|+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d-------- 456 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD-------- 456 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc--------
Confidence 4556677889999999999999999984 77888888999999999999999999996665
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
+.+|...+++. ++.+.||++.+.+.+-.. .+-..+. ...+..+++.++...++..++.+|-.
T Consensus 457 ----------~~lyc~LGDv~---~d~s~yEkawElsn~~sa-rA~r~~~---~~~~~~~~fs~~~~hle~sl~~nplq- 518 (777)
T KOG1128|consen 457 ----------PRLYCLLGDVL---HDPSLYEKAWELSNYISA-RAQRSLA---LLILSNKDFSEADKHLERSLEINPLQ- 518 (777)
T ss_pred ----------chhHHHhhhhc---cChHHHHHHHHHhhhhhH-HHHHhhc---cccccchhHHHHHHHHHHHhhcCccc-
Confidence 56776666654 344778888877632211 1000000 00113578899999999999999998
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
...|+.+|.+..+.++...|.+.|.+++...|++ .+-|+.....+++.++..+|...++.|++.+-++.. +|.+|
T Consensus 519 -~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~--~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~--iWENy 593 (777)
T KOG1128|consen 519 -LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN--AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ--IWENY 593 (777)
T ss_pred -hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc--hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe--eeech
Confidence 5699999999999999999999999999999998 788999999999999999999999999999866555 99999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
-.+-...|.++.|.+.|.+.+.+
T Consensus 594 mlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 594 MLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhhcccHHHHHHHHHHHHHh
Confidence 99999999999999999999876
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.01 E-value=5.1e-08 Score=106.98 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (703)
++|...++.+++..|++ ..++..++.++.+.+.+++|+..+++++...|++. ...........+.|++++|..+|+
T Consensus 103 ~ea~~~l~~~~~~~Pd~--~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~--~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 103 DEGLAVWRGIHQRFPDS--SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA--REILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred HHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHhcchHHHHHHHH
Confidence 88999999999999988 56888999999999999999999999999988874 445556666777889999999999
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 613 RAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 613 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+++..+|+++. .|+.++..+...|+.++|...|++|++...+.
T Consensus 179 ~~~~~~p~~~~--~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 179 RLSRQHPEFEN--GYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHhcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99988887655 88999999999999999999999998875544
No 120
>KOG3060|consensus
Probab=98.99 E-value=1.8e-07 Score=85.38 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=151.2
Q ss_pred cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy6461 43 NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ 119 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 119 (703)
.-+.++..++.+..+.-.+.. .+.|..|=+.....+. .|+..-|...+.+.-...|+|+++-...+..+...
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld-----~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD-----TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEAT 99 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 566778888888887766655 6788776555444332 26788899999998888999999999999999999
Q ss_pred cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH---HHHHhcCCHHHHHHHH
Q psy6461 120 HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI---EYLSSIERLDEAAVKL 196 (703)
Q Consensus 120 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~---~~~~~~~~~~~A~~~~ 196 (703)
|++++|..+|++.|+.+|+ +..++..-..+...+|+.-.|++.+...++.+|++.++|. .++...|++++|.-+|
T Consensus 100 ~~~~~A~e~y~~lL~ddpt--~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPT--DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccCcc--hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 9999999999999999995 4566666677777899999999999999999999999985 5678999999999999
Q ss_pred HHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC---chHHHHH
Q psy6461 197 AYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG---LFERARD 273 (703)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~ 273 (703)
++++-..+| + +.....|++++.-.| ++..|++
T Consensus 178 EE~ll~~P~------------------------n---------------------~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 178 EELLLIQPF------------------------N---------------------PLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred HHHHHcCCC------------------------c---------------------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 998743322 1 123445555555544 5677999
Q ss_pred HHHHHHhhcCC
Q psy6461 274 IYEEAIQTVTT 284 (703)
Q Consensus 274 ~~~~~l~~~~~ 284 (703)
.|.++++..|.
T Consensus 213 yy~~alkl~~~ 223 (289)
T KOG3060|consen 213 YYERALKLNPK 223 (289)
T ss_pred HHHHHHHhChH
Confidence 99999998874
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.93 E-value=1e-07 Score=87.85 Aligned_cols=168 Identities=12% Similarity=0.063 Sum_probs=142.8
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.+-+....+|.+.+. ..+...+. .|+-+....+..+++-..|.+..+...+++..... |++..|...+.+
T Consensus 55 al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~--------g~~~~A~~~~rk 125 (257)
T COG5010 55 ALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN--------GNFGEAVSVLRK 125 (257)
T ss_pred HHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHh--------cchHHHHHHHHH
Confidence 445566789999999 77777776 88888888999999999999999887777665443 899999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+....|++.++|..++-++.+.|+.+.|+.-|.++++..| +.+.+...++-.+.-.|+.+.|+.++.++....+.+..
T Consensus 126 A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP--NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 9999999999999999999999999999999999999999 56888888888888999999999999999887776655
Q ss_pred HHHH---HHHhcCCHHHHHHHHH
Q psy6461 178 DYIE---YLSSIERLDEAAVKLA 197 (703)
Q Consensus 178 ~~~~---~~~~~~~~~~A~~~~~ 197 (703)
.... .....|++.+|.++-.
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhcc
Confidence 4333 3357899998877753
No 122
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.6e-08 Score=93.36 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=79.9
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..++..|..||+|.+.|.-+++.+. +++++.|...|.+|++..|+++++|..|++.+.-... .....++..+|+
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-----~~~ta~a~~ll~ 217 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-----QQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----CcccHHHHHHHH
Confidence 4566667777777777777777776 7777777777777777777777777777766554321 123456777777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
++++.+|.++.....++.-++.+|++.+|...++..|...|.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 777777777777777777777777777777777777777663
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.88 E-value=2.7e-07 Score=85.20 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=104.4
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHH
Q psy6461 411 ARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADL 490 (703)
Q Consensus 411 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (703)
+...+-+....+|.+. .+ ..+...+...|+-+.+..+..++...+|.+ ..+...++..
T Consensus 52 a~~al~~~~~~~p~d~----~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-----------------~~ll~~~gk~ 109 (257)
T COG5010 52 AAAALGAAVLRNPEDL----SI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-----------------RELLAAQGKN 109 (257)
T ss_pred HHHHHHHHHhcCcchH----HH-HHHHHHHHhcccccchHHHHhhhhccCccc-----------------HHHHHHHHHH
Confidence 3333333444445554 55 666666666666666666666655555553 4455455555
Q ss_pred HHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHH
Q psy6461 491 EESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARH 570 (703)
Q Consensus 491 ~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 570 (703)
..+.|++ .+|...+.++....|++ ..+|..+|-.+.+.|+++.
T Consensus 110 ~~~~g~~-----------------------------------~~A~~~~rkA~~l~p~d--~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 110 QIRNGNF-----------------------------------GEAVSVLRKAARLAPTD--WEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHhcch-----------------------------------HHHHHHHHHHhccCCCC--hhhhhHHHHHHHHccChhH
Confidence 5555554 66777777777777766 4567777777777777777
Q ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 571 AMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYA 648 (703)
Q Consensus 571 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 648 (703)
|+..|.++++..|.++.+ .......+.-.|+...|+.++..+...-+.+.. +-..++......|++..|..+-.
T Consensus 153 Ar~ay~qAl~L~~~~p~~--~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~--v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 153 ARRAYRQALELAPNEPSI--ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR--VRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHhccCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH--HHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777776666433 223333333356667777777666666554443 55566666667777777776643
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=2.8e-07 Score=92.26 Aligned_cols=149 Identities=11% Similarity=0.054 Sum_probs=124.3
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
|....+|...+.... .+++++|+..+...+...|+|+-+|.....+..+. ++.++|.+.+++++...|+++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~--------nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEA--------NKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhcCCCcc
Confidence 677777777765555 88999999999999999999999998888887664 788999999999999999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhc
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSI 186 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 186 (703)
-+|+.|++.+++.|+..+|.+.+++.+..+| .++..|..+++.+..+|+..+|...+ ...+...
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~ 438 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALA 438 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhC
Confidence 9999999999999999999999999999999 56889999999999998876655443 3444567
Q ss_pred CCHHHHHHHHHHhh
Q psy6461 187 ERLDEAAVKLAYIV 200 (703)
Q Consensus 187 ~~~~~A~~~~~~~~ 200 (703)
|++++|+..+..+.
T Consensus 439 G~~~~A~~~l~~A~ 452 (484)
T COG4783 439 GRLEQAIIFLMRAS 452 (484)
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888887765
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.84 E-value=6e-08 Score=83.46 Aligned_cols=103 Identities=9% Similarity=0.095 Sum_probs=86.4
Q ss_pred cC-CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 26 RN-PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 26 ~~-P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
.. |.+.+....++-... .|+++.|.+.|+-.+..+|.+...|..++...... |++++|+..|.+|+..+|
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~--------g~~~~AI~aY~~A~~L~~ 100 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ--------KHWGEAIYAYGRAAQIKI 100 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHhcCC
Confidence 34 666677777776555 88999999999999999999999998888877664 888899999999999999
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhC
Q psy6461 104 KMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 136 (703)
++|......+.+++..|+.+.|++.|+.++...
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999888865
No 126
>KOG1128|consensus
Probab=98.84 E-value=1.2e-07 Score=98.85 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHH
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQA 475 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 475 (703)
..+|.....+++++++.+.+++.++++|-.. ..|+.++-..++.++++.|.+.|.+++...|++
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~----~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~------------ 552 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQL----GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN------------ 552 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccch----hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc------------
Confidence 3334444456778888888888887777776 778888777777888888888888888888774
Q ss_pred HHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHH
Q psy6461 476 RVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLY 555 (703)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 555 (703)
...|+.....+...++. .+|...+.+|++-+-.+ ..+|
T Consensus 553 -----~eaWnNls~ayi~~~~k-----------------------------------~ra~~~l~EAlKcn~~~--w~iW 590 (777)
T KOG1128|consen 553 -----AEAWNNLSTAYIRLKKK-----------------------------------KRAFRKLKEALKCNYQH--WQIW 590 (777)
T ss_pred -----hhhhhhhhHHHHHHhhh-----------------------------------HHHHHHHHHHhhcCCCC--Ceee
Confidence 56677776666655443 67777777777776555 3577
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc
Q psy6461 556 LLYAKLEEEHGLARHAMAVYERATGA 581 (703)
Q Consensus 556 ~~~a~~~~~~g~~~~A~~~~~~al~~ 581 (703)
.+|..+-.+.|.+++|.+.+.+.+..
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHh
Confidence 77777777777777777777777654
No 127
>KOG0550|consensus
Probab=98.79 E-value=4e-07 Score=88.74 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHHHhCCCcch----------HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH--HHHHHHHHH
Q psy6461 530 TKLERARDLFEQCLEACPPRYA----------KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF--EMFNIYIKK 597 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~ 597 (703)
.+.+.+...|+++|..+|++.. ...|-.-|.-..+.|++.+|-..|..|+.++|.+... .+|..-...
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 3445566666666666665420 1234444444445566666666666666666654321 222233333
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 598 AAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 598 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..++|+..+|..-...+++++|. .+..++..|.+..-.++++.|.+-|++|++.
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~s--yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSS--YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666666554 2335555555555566666666666666555
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=4.9e-06 Score=83.60 Aligned_cols=151 Identities=19% Similarity=0.107 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCC
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWP 510 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~ 510 (703)
..++..+..+++.|++++|+..++..+...|++ +-++...++++...++.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-----------------~~~~~~~~~i~~~~nk~------------- 356 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-----------------PYYLELAGDILLEANKA------------- 356 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCh-------------
Confidence 778888888999999999999999999999985 77777888887776554
Q ss_pred chHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHH
Q psy6461 511 YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEM 590 (703)
Q Consensus 511 ~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 590 (703)
++|.+.+++++..+|+. ..++++||+.+.+.|++.+|+.++.+.+...|++ ...
T Consensus 357 ----------------------~~A~e~~~kal~l~P~~--~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d--p~~ 410 (484)
T COG4783 357 ----------------------KEAIERLKKALALDPNS--PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED--PNG 410 (484)
T ss_pred ----------------------HHHHHHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--chH
Confidence 99999999999999998 5799999999999999999999999999999998 467
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 591 FNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 591 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
|......+...|+..+ ....++..+.-.|+++.|+..+.+|.+....
T Consensus 411 w~~LAqay~~~g~~~~-------------------a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 411 WDLLAQAYAELGNRAE-------------------ALLARAEGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHHHHHHHHHhCchHH-------------------HHHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 8887877777666544 4456677777899999999999999887543
No 129
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=8.6e-05 Score=87.62 Aligned_cols=246 Identities=9% Similarity=-0.008 Sum_probs=154.4
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC----cchHHHHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK----VEDLATVWCEWAELEL 441 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~ 441 (703)
|+++.|...+++++..................++..+...|+++.|...+++++...... ......++..++.++.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 888999999999886532211111123455677888889999999999999988762111 0011234556777888
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHH
Q psy6461 442 RAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLT 521 (703)
Q Consensus 442 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~ 521 (703)
..|++++|...+.+++........ . .....+...+.+....|
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~---~---------~~~~~~~~la~~~~~~G-------------------------- 626 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQP---Q---------QQLQCLAMLAKISLARG-------------------------- 626 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCc---h---------HHHHHHHHHHHHHHHcC--------------------------
Confidence 899999999999998876432100 0 00222233333444444
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhCCCcc-hHH--HHHH--HHHHHHHcCChHHHHHHHHHHhhccCcchH--HHHHHHH
Q psy6461 522 KFLSRYGGTKLERARDLFEQCLEACPPRY-AKT--LYLL--YAKLEEEHGLARHAMAVYERATGAVLPEEM--FEMFNIY 594 (703)
Q Consensus 522 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~--~~~~--~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~ 594 (703)
+.++|...++++....+... ... .... ........|+.+.|...+.......+.... ...+...
T Consensus 627 ---------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 627 ---------DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred ---------CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 45888888888876533211 000 1111 113334578899998888776653322211 1123344
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC
Q psy6461 595 IKKAAEIYGIPKTRQIYERAIESLPEEP----TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV 658 (703)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~ 658 (703)
.......|++++|..++++++....... .+.....++..+...|+.++|+..+.+|++...+.+
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 5555667899999999999987632211 234677788899999999999999999999876653
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.2e-07 Score=87.04 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=94.9
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH--- 120 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--- 120 (703)
...+.....++.-|..+|+|.+-|..++..+... |++..|...|.+|++..|+|+.++..|+..+..+.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--------~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~ 207 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMAL--------GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQ 207 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--------cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCc
Confidence 3467777888888888888888888888887664 77888888888888888888888888888876643
Q ss_pred ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 121 KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 121 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
...+++.+|+++|+.+|+ +......++.-+.++|++.+|+..++..++..|.+.
T Consensus 208 ~ta~a~~ll~~al~~D~~--~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 208 MTAKARALLRQALALDPA--NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred ccHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 346788888888888884 345555555555578888888888888888777664
No 131
>KOG3617|consensus
Probab=98.72 E-value=0.00013 Score=77.38 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=80.8
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHH------------HHHHHHHHhCCcccccccHHHHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTR------------HVFDRALRALPITQHHRVWPLYLSFV 152 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~------------~~~~~al~~~p~~~~~~~~~~~~~~~ 152 (703)
.|+.+.|.+..+-. ++..+|.+++.+..+..++|-|. +.++++.+ +|.. ... ..+-+-
T Consensus 741 iG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e--~ea--kvAvLA 810 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEE--DEA--KVAVLA 810 (1416)
T ss_pred eccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhh--HHHHHH
Confidence 46666666544432 46789999998887765444332 33445544 4421 222 222233
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccc
Q psy6461 153 KSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIR 232 (703)
Q Consensus 153 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~ 232 (703)
.+.|-.++|..+|++.-+.+ .+-.++...|.+++|..+-+ ..+.+.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE-----------------------------~~DRiH 856 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAE-----------------------------TKDRIH 856 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHh-----------------------------hcccee
Confidence 35577788888888765543 44566667777777665532 111110
Q ss_pred cccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHH
Q psy6461 233 SLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAI 279 (703)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 279 (703)
.-..++.++..+...++.+.|.+.|+++-
T Consensus 857 ------------------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 857 ------------------LRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred ------------------hhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 11468888999999999999999999843
No 132
>KOG0553|consensus
Probab=98.71 E-value=8.3e-08 Score=90.18 Aligned_cols=92 Identities=10% Similarity=0.148 Sum_probs=86.9
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
..++|++|...|.+||+++|+|+-++.+.+.++.+.|.++.|.+-.++||+++| ....+|..++..+..+|++++|+.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcHHHHHH
Confidence 358899999999999999999999999999999999999999999999999999 568888888889999999999999
Q ss_pred HHHHHHhhCCCCHH
Q psy6461 164 VFRRYLKLFPEDAE 177 (703)
Q Consensus 164 ~~~~~l~~~p~~~~ 177 (703)
.|+++|.++|++..
T Consensus 171 aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 171 AYKKALELDPDNES 184 (304)
T ss_pred HHHhhhccCCCcHH
Confidence 99999999999974
No 133
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=9.9e-05 Score=87.14 Aligned_cols=283 Identities=12% Similarity=0.035 Sum_probs=181.7
Q ss_pred cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHHHHHHH
Q psy6461 365 DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYT--KVEDLATVWCEWAELELR 442 (703)
Q Consensus 365 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~ 442 (703)
.|+++.+...+++++...+... ..........++..+...|++++|+..+++++..... ...........++.++..
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTW-YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 4889999999999987533211 1111234566777888999999999999999876322 111112345677888889
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHH
Q psy6461 443 AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522 (703)
Q Consensus 443 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~ 522 (703)
.|++++|...+++++........ ...+ ....++...+.++...
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~---~~~~------~~~~~~~~la~~~~~~---------------------------- 586 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHL---EQLP------MHEFLLRIRAQLLWEW---------------------------- 586 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc---cccc------HHHHHHHHHHHHHHHh----------------------------
Confidence 99999999999998865322100 0000 0011122233333333
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhCCCc---chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHH-----HH
Q psy6461 523 FLSRYGGTKLERARDLFEQCLEACPPR---YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFN-----IY 594 (703)
Q Consensus 523 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----~~ 594 (703)
|++++|+..+.+++...... .....+...+.+....|+++.|...++++....+.......+. ..
T Consensus 587 -------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 587 -------ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred -------cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 44589999999888763321 1134666788889999999999999999976533211000111 11
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC----ChHhHHHHHH
Q psy6461 595 IKKAAEIYGIPKTRQIYERAIESLPEEPT--RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV----TAGFWAAWKS 668 (703)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~ 668 (703)
+......|+.+.|.....+.....+.... ...+...+..+...|+.++|...+++|+......+ .......++.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 12223367888888887776653332221 11356778888899999999999999988643221 2345666778
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Q psy6461 669 FEITHGNEDTMREMLRIKRSVQAQ 692 (703)
Q Consensus 669 ~~~~~g~~~~~~~~~~~~~~~~~~ 692 (703)
.....|+.++|...++.+-.+...
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCc
Confidence 888899999999999777766533
No 134
>KOG3617|consensus
Probab=98.68 E-value=0.00012 Score=77.59 Aligned_cols=268 Identities=16% Similarity=0.171 Sum_probs=141.1
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|-.++|..+|+++-+. -.+-++|...|..++|.++-+-=-.++- ...|..|+..+...++
T Consensus 814 gMlEeA~~lYr~ckR~--------------DLlNKlyQs~g~w~eA~eiAE~~DRiHL------r~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY--------------DLLNKLYQSQGMWSEAFEIAETKDRIHL------RNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHHHHHH--------------HHHHHHHHhcccHHHHHHHHhhccceeh------hhhHHHHHHHHHhhcc
Confidence 6666777777765432 1223566666767766666553222222 2446666666666666
Q ss_pred HHHHHHHHHHHhc----------CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCc
Q psy6461 446 EEAALRLMARATA----------TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPY 511 (703)
Q Consensus 446 ~~~A~~~~~~a~~----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~ 511 (703)
.+.|++.|+++-. -+|..+. ..-+-.+++.+|.-|++.++..|++ .+|+.|-..|
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e-------~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f---- 942 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIE-------QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF---- 942 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHH-------HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh----
Confidence 7777777766421 1111100 0001112456677777777777766 2222221111
Q ss_pred hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHh------hccCcc
Q psy6461 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERAT------GAVLPE 585 (703)
Q Consensus 512 ~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al------~~~p~~ 585 (703)
....-..-.|+.++|-++-++ ..+ ..+...+|+.|...|+.-+|+..|.||- .+...+
T Consensus 943 ---------s~VrI~C~qGk~~kAa~iA~e-----sgd--~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn 1006 (1416)
T KOG3617|consen 943 ---------SMVRIKCIQGKTDKAARIAEE-----SGD--KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN 1006 (1416)
T ss_pred ---------hheeeEeeccCchHHHHHHHh-----ccc--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000000124555666554433 223 3478899999999999999999888763 222222
Q ss_pred h-HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHH---------HHHhcccC
Q psy6461 586 E-MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY---------AHCSQICD 655 (703)
Q Consensus 586 ~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~---------~~a~~~~~ 655 (703)
+ ...+|+..+.. ...+.-.|..+|+. .|.+. -.-..+|.+.|.+.+|..+- +-.-+-.+
T Consensus 1007 d~~d~L~nlal~s--~~~d~v~aArYyEe----~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1007 DMKDRLANLALMS--GGSDLVSAARYYEE----LGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred CHHHHHHHHHhhc--CchhHHHHHHHHHH----cchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 1 12233321111 01122222333332 12111 11122344556665555432 11111235
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy6461 656 PRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQA 691 (703)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 691 (703)
++.++.+.+.-++|-..+.++++|..++-++|+.+.
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666899999999999999999999999988888654
No 135
>KOG3785|consensus
Probab=98.67 E-value=0.00036 Score=67.10 Aligned_cols=434 Identities=11% Similarity=0.066 Sum_probs=225.2
Q ss_pred hhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMH---KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
.++..|+.+++-.+.... ++..+|+.+ +++..|++++|..+|.-+.+... .+..+|..++.+..=.|.+.+|.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~--C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAH--CYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHH--HHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHH
Confidence 568888888887765532 355777654 55578999999999998777433 45778877766544456677776
Q ss_pred HHHHHHHhhCCCCHH---HHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHH
Q psy6461 163 RVFRRYLKLFPEDAE---DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAI 239 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 239 (703)
.+-.+ .|.++- .+..+..+.++-++-....+.+-
T Consensus 112 ~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~Lq--------------------------------------- 148 (557)
T KOG3785|consen 112 SIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ--------------------------------------- 148 (557)
T ss_pred HHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh---------------------------------------
Confidence 65444 355542 23444455555444333333221
Q ss_pred HHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCc
Q psy6461 240 IRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEE 319 (703)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 319 (703)
+..+-...++.+...+..+.+|+++|++++...|.... ..+|.+.-.+.....+..
T Consensus 149 ----------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a-lNVy~ALCyyKlDYydvs------------- 204 (557)
T KOG3785|consen 149 ----------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA-LNVYMALCYYKLDYYDVS------------- 204 (557)
T ss_pred ----------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh-hHHHHHHHHHhcchhhhH-------------
Confidence 11133456777777788899999999999987664321 122221111111111100
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh----hhcCCchhHHHHHHHHHHhcCCCccCCchhHHH
Q psy6461 320 DDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR----LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLW 395 (703)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~----~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 395 (703)
.++++- -+++.|++..+....+- ++.|...+ +......+..+. .
T Consensus 205 ------------qevl~v--------YL~q~pdStiA~NLkacn~fRl~ngr~ae--~E~k~ladN~~~-----~----- 252 (557)
T KOG3785|consen 205 ------------QEVLKV--------YLRQFPDSTIAKNLKACNLFRLINGRTAE--DEKKELADNIDQ-----E----- 252 (557)
T ss_pred ------------HHHHHH--------HHHhCCCcHHHHHHHHHHHhhhhccchhH--HHHHHHHhcccc-----c-----
Confidence 001100 15566666555433321 22343321 111121111110 0
Q ss_pred HHHHHHHHHc-----CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 396 IEFGKFYEVN-----DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 396 ~~~a~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
+-.+....++ .+-+.|.+++-..+++-| +....++-.++++++..+|..+.+. .+|..
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP-------EARlNL~iYyL~q~dVqeA~~L~Kd---l~Ptt------- 315 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP-------EARLNLIIYYLNQNDVQEAISLCKD---LDPTT------- 315 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhCh-------HhhhhheeeecccccHHHHHHHHhh---cCCCC-------
Confidence 1112222222 123566666666666655 5566777777777788877777654 44431
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCCh-------hHHHhHhhcC-------CCCchHHHHHHHHHHHHHHhCCCChhHHH
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTF-------KAYEKGIALF-------KWPYIFDIWNTYLTKFLSRYGGTKLERAR 536 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~al~~~-------~~~~~~~~~~~y~~~~~~~~~~~~~~~A~ 536 (703)
+.-+..-+-...+.|+- +.-++-+... ..-+-.....+|. .+.. ++|...
T Consensus 316 ----------P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f-FL~~-----qFddVl 379 (557)
T KOG3785|consen 316 ----------PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF-FLSF-----QFDDVL 379 (557)
T ss_pred ----------hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH-HHHH-----HHHHHH
Confidence 33333334343333332 1111111100 0001222233333 1122 247776
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHH-HHHHhcCchHHHHHHHHHH
Q psy6461 537 DLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIK-KAAEIYGIPKTRQIYERAI 615 (703)
Q Consensus 537 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al 615 (703)
.++...-...-++ -...+++++.....|++.+|.++|-+.....-.+. .++..++. .++..+...-|- +..|
T Consensus 380 ~YlnSi~sYF~Nd--D~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~--~~Y~s~LArCyi~nkkP~lAW---~~~l 452 (557)
T KOG3785|consen 380 TYLNSIESYFTND--DDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK--ILYKSMLARCYIRNKKPQLAW---DMML 452 (557)
T ss_pred HHHHHHHHHhcCc--chhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh--HHHHHHHHHHHHhcCCchHHH---HHHH
Confidence 6666554555544 24788999999999999999999987765443331 23443333 334566666554 4445
Q ss_pred HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHH
Q psy6461 616 ESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAA 665 (703)
Q Consensus 616 ~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 665 (703)
+.+..+....+.--.|+-..+.|++==|-+.|.- +++.+|. +.-|+-
T Consensus 453 k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~-lE~lDP~--pEnWeG 499 (557)
T KOG3785|consen 453 KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDE-LEILDPT--PENWEG 499 (557)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHccCCC--ccccCC
Confidence 5544332222333445566677776555555553 4555664 556653
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.65 E-value=1.3e-06 Score=93.27 Aligned_cols=156 Identities=10% Similarity=0.061 Sum_probs=123.5
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh------cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK------NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~------~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
+.++....-|.+.++|-.+.+-.. .++..+|+.+|++|++.+|+....|..++..............++...+.
T Consensus 325 e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~ 404 (517)
T PRK10153 325 MQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALS 404 (517)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 344455667899999999876543 34588999999999999999998888765543222111111123466777
Q ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 93 NTFERSLVF--MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 93 ~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
...++++.. +|.++.++..++......|++++|...|++|+..+|. ...|..++.++...|++++|+..|++++.
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS---WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888887775 7888899999999888999999999999999999993 46788889999999999999999999999
Q ss_pred hCCCCHH
Q psy6461 171 LFPEDAE 177 (703)
Q Consensus 171 ~~p~~~~ 177 (703)
++|..+.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9999875
No 137
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.64 E-value=5.1e-07 Score=92.52 Aligned_cols=93 Identities=10% Similarity=0.191 Sum_probs=69.1
Q ss_pred HHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 38 IEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 38 ~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
+.... .++++.|+..|+++++.+|.+..+|..++..+... |++++|...+++++..+|+++.+|..+|.++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~--------g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL--------GNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 44333 67777777777777777777777777777666543 6777777777777777777777777777777
Q ss_pred HhccChHHHHHHHHHHHHhCCc
Q psy6461 117 MDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~ 138 (703)
...|++++|...|+++++..|.
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCC
Confidence 7777777777777777777774
No 138
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=3.4e-06 Score=83.25 Aligned_cols=249 Identities=14% Similarity=0.097 Sum_probs=102.2
Q ss_pred hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH
Q psy6461 363 LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR 442 (703)
Q Consensus 363 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 442 (703)
++.|++..++..++ +....+ ...........+.+...|+++..+.-....- +|.. .....++.++..
T Consensus 12 fy~G~Y~~~i~e~~--~~~~~~----~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l-----~av~~la~y~~~ 78 (290)
T PF04733_consen 12 FYLGNYQQCINEAS--LKSFSP----ENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPEL-----QAVRLLAEYLSS 78 (290)
T ss_dssp HCTT-HHHHCHHHH--CHTSTC----HHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCC-----HHHHHHHHHHCT
T ss_pred HHhhhHHHHHHHhh--ccCCCc----hhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhH-----HHHHHHHHHHhC
Confidence 44477777776555 222222 1233445555677777887766554433211 2222 445555655544
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHH
Q psy6461 443 AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522 (703)
Q Consensus 443 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~ 522 (703)
.++.+.+..-++..+...... .++.+...-+.++...|++ +.|++........+...-.+..
T Consensus 79 ~~~~e~~l~~l~~~~~~~~~~---------------~~~~~~~~~A~i~~~~~~~---~~AL~~l~~~~~lE~~al~Vqi 140 (290)
T PF04733_consen 79 PSDKESALEELKELLADQAGE---------------SNEIVQLLAATILFHEGDY---EEALKLLHKGGSLELLALAVQI 140 (290)
T ss_dssp STTHHCHHHHHHHCCCTS------------------CHHHHHHHHHHHHCCCCHH---HHHHCCCTTTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccc---------------ccHHHHHHHHHHHHHcCCH---HHHHHHHHccCcccHHHHHHHH
Confidence 445666666665544332210 0122223333344444443 4555444322222222211111
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhc
Q psy6461 523 FLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIY 602 (703)
Q Consensus 523 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 602 (703)
++. .+++|.|.+.++++-+.+.++....+...|..+..-.+++.+|.-+|+...+.++.+ +.+..+.+...+..|
T Consensus 141 ~L~---~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t--~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 141 LLK---MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST--PKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHH---TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S--HHHHHHHHHHHHHCT
T ss_pred HHH---cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhC
Confidence 111 334455555555544444443211111111111111123455555555544444333 233444444444455
Q ss_pred CchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q psy6461 603 GIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEI-DRARAIYAH 649 (703)
Q Consensus 603 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~ 649 (703)
++++|..++++++..+|.++. .+...+-+....|+. +.+.+.+.+
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d--~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPD--TLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHH--HHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 555555555555555555443 344444444444544 333334433
No 139
>KOG0553|consensus
Probab=98.62 E-value=2.8e-07 Score=86.74 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=92.6
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.+++.+|+..|.+||+.+|.+..+....+..+.+. |.++.|...+++||.++|....+|..++..+..+|++
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L--------g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL--------GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh--------cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 58999999999999999999999999998887664 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
++|...|.+||.++|. +...|..+-..+...+..
T Consensus 166 ~~A~~aykKaLeldP~--Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPD--NESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHHhhhccCCC--cHHHHHHHHHHHHHhcCC
Confidence 9999999999999995 455555554444444443
No 140
>KOG2053|consensus
Probab=98.56 E-value=0.0024 Score=69.23 Aligned_cols=183 Identities=9% Similarity=0.047 Sum_probs=121.2
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
++++.+|.+..++.++..|+.+-+-..-+-...+.|+.++|..+++ ++...+. ++......+-.++.+.++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCC-CchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4789999999999999999999888888888999999999996666 5554443 3455556667788889999999999
Q ss_pred HHHHHhhCCCCHHHHHHH---HHhcCCHH----HHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcc--cccccc
Q psy6461 165 FRRYLKLFPEDAEDYIEY---LSSIERLD----EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPD--KIRSLN 235 (703)
Q Consensus 165 ~~~~l~~~p~~~~~~~~~---~~~~~~~~----~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~--~~~~~~ 235 (703)
|+++++.+|+ .+...++ +.+.+.|. -|+++|+.. ++..+-+|....-++...+. .....-
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~----------pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNF----------PKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CcccchHHHHHHHHHHhccCCcccccch
Confidence 9999999999 5544333 45555553 466666644 44456677776555543222 211101
Q ss_pred ----HHHHHHhHhhhh-ccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 236 ----VDAIIRGGLRRY-TDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 236 ----~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
++...+..+..- +-....-...+-.+...+|++++|..++..-+.
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la 218 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA 218 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 111122222221 111222234455666788999999999865444
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.55 E-value=8.2e-06 Score=80.55 Aligned_cols=170 Identities=14% Similarity=0.116 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
++.+.+.-|.++...|+++.|.+++.++ .+. +.......++++.++++.|.+.++++.+.+.+.+
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~------ 165 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSL----ELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI------ 165 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCH----HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Ccc----cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH------
Confidence 3445555567777889999999888765 333 6666777888999999999999999988876621
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
-.++...|+.+.. +..++.+|..+|+......|..
T Consensus 166 ---------l~qLa~awv~l~~-----------------------------------g~e~~~~A~y~f~El~~~~~~t- 200 (290)
T PF04733_consen 166 ---------LTQLAEAWVNLAT-----------------------------------GGEKYQDAFYIFEELSDKFGST- 200 (290)
T ss_dssp ---------HHHHHHHHHHHHH-----------------------------------TTTCCCHHHHHHHHHHCCS--S-
T ss_pred ---------HHHHHHHHHHHHh-----------------------------------CchhHHHHHHHHHHHHhccCCC-
Confidence 0122222222211 2345799999999988877766
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhCCCcch
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGI-PKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~ 623 (703)
+.+....+.+.+..|++++|.++++.++...|.+. .+....+......|+. +.+.....+.-..+|+++.
T Consensus 201 -~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~--d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 201 -PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP--DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH--HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 67888999999999999999999999999999884 3444556666566666 6677888888888999764
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.54 E-value=1.1e-06 Score=71.11 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=57.7
Q ss_pred HHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy6461 34 WLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDY 112 (703)
Q Consensus 34 w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 112 (703)
|..++..+. .+++++|...++++++..|.+...|..++...... +++++|...|++++...|.++..|..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL--------GKYEEALEDYEKALELDPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 444454444 56666666666666666666666665555554433 556666666666666666666666666
Q ss_pred HHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 113 GRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 113 ~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
+.++...|+++.|...+.++++..|
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHccCC
Confidence 6666666666666666666665544
No 143
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.53 E-value=7.6e-06 Score=82.50 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccC----CCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHH
Q psy6461 49 INTIYERSLKELPGSYKLWYNYLKLRRKQVKGK----VITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQ 124 (703)
Q Consensus 49 a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 124 (703)
-...|++.++.+|+|++.|+.++.+........ .....-.+.-..+|++||+.+|++..+++.|.....+..+.++
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 346789999999999999999999865443211 1111224556789999999999999999999999998889999
Q ss_pred HHHHHHHHHHhCCcccccccHHHHHHHHHhc---CChHHHHHHHHHHHhh
Q psy6461 125 TRHVFDRALRALPITQHHRVWPLYLSFVKSH---AVPETAVRVFRRYLKL 171 (703)
Q Consensus 125 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~ 171 (703)
..+.+++++..+| +...+|..|+.+.... ..++..+.+|.++++.
T Consensus 84 l~~~we~~l~~~~--~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 84 LAKKWEELLFKNP--GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHHHCC--CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999999 5699999999997652 2457778888887754
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.51 E-value=2.3e-06 Score=73.86 Aligned_cols=100 Identities=15% Similarity=-0.006 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (703)
.+....+|..+...|++++|.++|+-....+|.+ ..-|.++...+...|++.+|...|.+|+...|++|. .....+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~--~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~--~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS--FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ--APWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch--HHHHHH
Confidence 3567788888889999999999999999999987 567778888888889999999999999999999887 688888
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 632 EMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
.++...|+.+.|++.|+.|+..+.
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999998863
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.50 E-value=5.3e-06 Score=73.36 Aligned_cols=120 Identities=18% Similarity=0.082 Sum_probs=92.1
Q ss_pred CCChhHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch-HHHHHHHHHHHHHHhcCchH
Q psy6461 529 GTKLERARDLFEQCLEACPPR-YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE-MFEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~ 606 (703)
.++.+.+...+++.++..|+. ......+.++......|++++|...|+.++...|++. ...........+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 456688888999999999987 3456888899999999999999999999999876543 22233344555667889999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
|...++.. ...+ ....++...++++.+.|++++|+..|++|+
T Consensus 104 Al~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99888662 2222 233477888999999999999999999875
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.49 E-value=3.5e-06 Score=76.99 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=84.0
Q ss_pred CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 29 FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 29 ~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
.....+..++..+. .|++++|...|+++++..|.. ...|..++..... .|++++|...|++++...|+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS--------NGEHDKALEYYHQALELNPK 104 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCcc
Confidence 44445566666666 788888888888888776654 3456555555443 27778888888888888888
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLS 184 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 184 (703)
++..+..++.++...|+...+..-++.++. .+++|.+.+++++..+|++......++.
T Consensus 105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~----------------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 162 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEA----------------------LFDKAAEYWKQAIRLAPNNYIEAQNWLK 162 (172)
T ss_pred cHHHHHHHHHHHHHcCChHhHhhCHHHHHH----------------------HHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence 777777777777777776655554444432 1466778888888888887544444443
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=98.48 E-value=9.5e-06 Score=82.08 Aligned_cols=171 Identities=9% Similarity=-0.019 Sum_probs=134.2
Q ss_pred HhcCCCCh---HHH--HHHHHHhh------cCchhHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhc--ccCCCCchh
Q psy6461 24 ILRNPFSV---KHW--LRYIEHKK------NAPKAIINTIYERSL---KELPGSYKLWYNYLKLRRKQV--KGKVITDPS 87 (703)
Q Consensus 24 l~~~P~~~---~~w--~~~~~~~~------~~~~~~a~~~~e~al---~~~P~~~~~w~~~~~~~~~~~--~~~~~~~~~ 87 (703)
...-|.+. ++| -.|.+-.. ..+.++|..+|.+|+ +.+|.....+..++..+.... +... ...+
T Consensus 241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~ 319 (458)
T PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELA 319 (458)
T ss_pred hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHH
Confidence 34447787 888 44443222 356788999999999 999988888777776665442 2222 3456
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHH
Q psy6461 88 YEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR 167 (703)
Q Consensus 88 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 167 (703)
..+|..+-++|+..+|.++.+....|......++++.|..+|++|+..+| +...+|...+-...-.|+.++|+..+++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P--n~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST--DIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78899999999999999999999999988888999999999999999999 5688898888888889999999999999
Q ss_pred HHhhCCCCHHH-----HHHHHHhcCCHHHHHHHHHH
Q psy6461 168 YLKLFPEDAED-----YIEYLSSIERLDEAAVKLAY 198 (703)
Q Consensus 168 ~l~~~p~~~~~-----~~~~~~~~~~~~~A~~~~~~ 198 (703)
+++++|.-..+ |+.+|. ...+++|+++|-+
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 99999987653 343332 4456778877743
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.48 E-value=3.5e-06 Score=86.34 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCch
Q psy6461 433 WCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYI 512 (703)
Q Consensus 433 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~ 512 (703)
+..-|...+..|++++|+..|+++++.+|++ ..+|..++.++...|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-----------------~~a~~~~a~~~~~~g~~--------------- 52 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----------------AELYADRAQANIKLGNF--------------- 52 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH---------------
Confidence 3445667778999999999999999999985 78888888888777665
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHH
Q psy6461 513 FDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFN 592 (703)
Q Consensus 513 ~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 592 (703)
++|...+++++.++|++ ..+|..+|.++...|++++|+..|++++...|.+..+..|.
T Consensus 53 --------------------~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 53 --------------------TEAVADANKAIELDPSL--AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred --------------------HHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999998 67899999999999999999999999999999998777777
Q ss_pred HHHHHHH
Q psy6461 593 IYIKKAA 599 (703)
Q Consensus 593 ~~~~~~~ 599 (703)
..+...+
T Consensus 111 ~~~~~kl 117 (356)
T PLN03088 111 KECDEKI 117 (356)
T ss_pred HHHHHHH
Confidence 6664444
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.48 E-value=8.8e-07 Score=66.94 Aligned_cols=67 Identities=21% Similarity=0.378 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHhCC
Q psy6461 63 SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH-KITQTRHVFDRALRALP 137 (703)
Q Consensus 63 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 137 (703)
++..|...+...... |++++|...|+++++.+|+++.+|..++.++...| ++++|...|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~--------~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ--------GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT--------THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445566666555443 66666666666666666666666666666666666 56666666666666665
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.47 E-value=3.2e-06 Score=76.95 Aligned_cols=101 Identities=12% Similarity=0.163 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH-------hc
Q psy6461 86 PSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK-------SH 155 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-------~~ 155 (703)
|++++|...|++++...|++ +.+|..++.++...|++++|+..|++++...|. ....|..++.++. ..
T Consensus 49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~--~~~~~~~la~i~~~~~~~~~~~ 126 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF--LPQALNNMAVICHYRGEQAIEQ 126 (168)
T ss_pred CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHhhHHHHHc
Confidence 45555555555555554432 235555555555556666666666666655552 2334444444444 34
Q ss_pred CCh-------HHHHHHHHHHHhhCCCCHHHHHHHHHhcCC
Q psy6461 156 AVP-------ETAVRVFRRYLKLFPEDAEDYIEYLSSIER 188 (703)
Q Consensus 156 ~~~-------~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 188 (703)
|++ ++|...|++++..+|.+......++...|+
T Consensus 127 g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 127 GDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 443 356667777777777766544444444443
No 151
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.44 E-value=2.6e-07 Score=86.45 Aligned_cols=133 Identities=19% Similarity=0.271 Sum_probs=106.1
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh-cC-------------------c---hhHHHHHHHHHHhhCCCCHHHHH
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NA-------------------P---KAIINTIYERSLKELPGSYKLWY 68 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~-------------------~---~~~a~~~~e~al~~~P~~~~~w~ 68 (703)
.+.+.|..||..|...-.....+..|+.++. .. | ..+..-.|.|+...+|+++.+|.
T Consensus 32 ~IvktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~ 111 (435)
T COG5191 32 RIVKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIWS 111 (435)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHHHH
Confidence 4556678899999877778889999988775 10 0 12333456788889999999999
Q ss_pred HHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-ccChHHHHHHHHHHHHhCCcccccccHHH
Q psy6461 69 NYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD-QHKITQTRHVFDRALRALPITQHHRVWPL 147 (703)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 147 (703)
.|+.+.... +-+.+...+|-.+++.+|.+..+|+--+.+... .++++.+|.+|.++|+.+| ..+.+|..
T Consensus 112 ~y~~Y~~k~--------k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~--~~p~iw~e 181 (435)
T COG5191 112 QYAAYVIKK--------KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS--RSPRIWIE 181 (435)
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC--CCchHHHH
Confidence 999886654 678889999999999999999999886666544 6899999999999999999 45899999
Q ss_pred HHHHHHh
Q psy6461 148 YLSFVKS 154 (703)
Q Consensus 148 ~~~~~~~ 154 (703)
|.+++..
T Consensus 182 yfr~El~ 188 (435)
T COG5191 182 YFRMELM 188 (435)
T ss_pred HHHHHHH
Confidence 9988754
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.43 E-value=2.4e-06 Score=69.13 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|++++|...++++++..|.++.+|..++.++...+++++|...|++++...|. ....|..++.++...|+++.|...+
T Consensus 14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NAKAYYNLGLAYYKLGKYEEALEAY 91 (100)
T ss_pred hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHHHHHHHHHHhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999884 4578888888888999999999999
Q ss_pred HHHHhhCCC
Q psy6461 166 RRYLKLFPE 174 (703)
Q Consensus 166 ~~~l~~~p~ 174 (703)
.+++..+|.
T Consensus 92 ~~~~~~~~~ 100 (100)
T cd00189 92 EKALELDPN 100 (100)
T ss_pred HHHHccCCC
Confidence 999888773
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.43 E-value=4.8e-07 Score=68.37 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCC
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG-QEEAALRLMARATATPA 461 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p 461 (703)
.+.+|..+|..+...|++++|+..|+++++.+|+++ .+|..+|.++...| ++++|+..++++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 356899999999999999999999999999999987 89999999999999 79999999999999887
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.42 E-value=6.4e-06 Score=70.11 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc-ccccHHHHHHHHHhcCChHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ-HHRVWPLYLSFVKSHAVPETA 161 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A 161 (703)
|++++|...|++++...|++ +.++..++.++...|+++.|...|++++...|.+. .+.+|...+.++...|+++.|
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 95 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKA 95 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHH
Confidence 88999999999999999876 57888999999999999999999999999988532 256788888999899999999
Q ss_pred HHHHHHHHhhCCCCHH
Q psy6461 162 VRVFRRYLKLFPEDAE 177 (703)
Q Consensus 162 ~~~~~~~l~~~p~~~~ 177 (703)
+..|++++...|++..
T Consensus 96 ~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 96 KATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHCcCChh
Confidence 9999999999999864
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=1.1e-05 Score=71.18 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=68.5
Q ss_pred cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---PRIWLDYGRFL 116 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~ 116 (703)
.++...+...+++.++.+|++ ...++.++..... .|++++|...|+.++...|+. +.+++.++.++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~--------~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE--------QGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 566666666677777777766 2333333333332 266777777777777665443 24556666677
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 169 (703)
..+|++++|...++.. ...+ ..+..+...+.++...|+.++|+..|+++|
T Consensus 96 ~~~~~~d~Al~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 96 LQQGQYDEALATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHcCCHHHHHHHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7777777777776542 1111 234455556666666777777777766653
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.41 E-value=6e-06 Score=70.28 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=86.6
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC--
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM-- 105 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 105 (703)
+.+...+.... +|++++|...|+++++.+|++ ...+..++...... |+++.|...|++++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ--------GKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHHCCCCCc
Confidence 56677777777 999999999999999999987 45666677666553 88999999999999998885
Q ss_pred -HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc
Q psy6461 106 -PRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT 139 (703)
Q Consensus 106 -~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 139 (703)
+.++..++.++...|+.++|...+++++...|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 6789999999999999999999999999999953
No 157
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.38 E-value=0.00093 Score=65.35 Aligned_cols=253 Identities=20% Similarity=0.162 Sum_probs=171.3
Q ss_pred hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH--HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH
Q psy6461 363 LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE--VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE 440 (703)
Q Consensus 363 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 440 (703)
+.+|+++.|++-|+-++.. |. ....-..|-+++ ..|+.+.|+.+-+++-..-|.-+ -.|.....-.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d--PE------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~----WA~~AtLe~r 198 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD--PE------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP----WAARATLEAR 198 (531)
T ss_pred HhcCchHHHHHHHHHHhcC--hH------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc----hHHHHHHHHH
Confidence 4569999999999988763 31 112222233333 68999999999999988888765 4455555555
Q ss_pred HHcCCHHHHHHHHHHHhcC---CCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHH
Q psy6461 441 LRAGQEEAALRLMARATAT---PARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWN 517 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~ 517 (703)
+..|+++.|+++++..... .++. .-...+-++.. ++
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~-------------------aeR~rAvLLtA--------kA-------------- 237 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDV-------------------AERSRAVLLTA--------KA-------------- 237 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhh-------------------HHHHHHHHHHH--------HH--------------
Confidence 6789999999999876542 2221 00011111100 00
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHH
Q psy6461 518 TYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKK 597 (703)
Q Consensus 518 ~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 597 (703)
... -..+...|+..-..++++.|+- ...-+.-+..+.+.|+..++-+++|.+.+..|. +.||..|...
T Consensus 238 ------~s~-ldadp~~Ar~~A~~a~KL~pdl--vPaav~AAralf~d~~~rKg~~ilE~aWK~ePH---P~ia~lY~~a 305 (531)
T COG3898 238 ------MSL-LDADPASARDDALEANKLAPDL--VPAAVVAARALFRDGNLRKGSKILETAWKAEPH---PDIALLYVRA 305 (531)
T ss_pred ------HHH-hcCChHHHHHHHHHHhhcCCcc--chHHHHHHHHHHhccchhhhhhHHHHHHhcCCC---hHHHHHHHHh
Confidence 000 0234578999999999999987 346677788888999999999999999999997 4688888765
Q ss_pred HHHhcCchHHHHHHHHH---HHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHc-
Q psy6461 598 AAEIYGIPKTRQIYERA---IESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITH- 673 (703)
Q Consensus 598 ~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 673 (703)
.. |+ .+..-.+++ -...|++.. ..+..+..-..-|++..|+.--+.+.... | -..++..+++++..+
T Consensus 306 r~--gd--ta~dRlkRa~~L~slk~nnae--s~~~va~aAlda~e~~~ARa~Aeaa~r~~-p--res~~lLlAdIeeAet 376 (531)
T COG3898 306 RS--GD--TALDRLKRAKKLESLKPNNAE--SSLAVAEAALDAGEFSAARAKAEAAAREA-P--RESAYLLLADIEEAET 376 (531)
T ss_pred cC--CC--cHHHHHHHHHHHHhcCccchH--HHHHHHHHHHhccchHHHHHHHHHHhhhC-c--hhhHHHHHHHHHhhcc
Confidence 42 23 333333333 234677654 55666666667899999999888887773 4 367888999999888
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy6461 674 GNEDTMREMLRIKRSVQA 691 (703)
Q Consensus 674 g~~~~~~~~~~~~~~~~~ 691 (703)
|+-.+++.++ ++.|..
T Consensus 377 GDqg~vR~wl--Aqav~A 392 (531)
T COG3898 377 GDQGKVRQWL--AQAVKA 392 (531)
T ss_pred CchHHHHHHH--HHHhcC
Confidence 9988888887 666543
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.38 E-value=2.1e-05 Score=71.87 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=91.9
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
.....+..+|..+...|++++|...|+++++..|+.. ....++..++.++.+.|++++|+..+.+++...|++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ------ 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------
Confidence 4566789999999999999999999999998866543 123689999999999999999999999999999985
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA 545 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~ 545 (703)
...+..++.++...|+. ..+++++.. +++|.+++++++..
T Consensus 106 -----------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~-------------------------~~~A~~~~~~a~~~ 149 (172)
T PRK02603 106 -----------PSALNNIAVIYHKRGEKAEEAGDQDEAEAL-------------------------FDKAAEYWKQAIRL 149 (172)
T ss_pred -----------HHHHHHHHHHHHHcCChHhHhhCHHHHHHH-------------------------HHHHHHHHHHHHhh
Confidence 66777778777777664 112222211 37788888888888
Q ss_pred CCCc
Q psy6461 546 CPPR 549 (703)
Q Consensus 546 ~p~~ 549 (703)
+|++
T Consensus 150 ~p~~ 153 (172)
T PRK02603 150 APNN 153 (172)
T ss_pred Cchh
Confidence 8876
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.37 E-value=1.1e-06 Score=65.55 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=57.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 397 EFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 397 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
.+|..+...|++++|+..|+++++.+|.++ .+|..++.++.+.|++++|+..|+++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNP----EAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH----HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 468888999999999999999999999987 999999999999999999999999999999974
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.36 E-value=0.00013 Score=72.62 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV---EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
.+...+|.++...|++++|+.+|++.....-.+. ......++..+-+++..|++..|...+++....+|...+.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s--- 232 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS--- 232 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc---
Confidence 4567778888999999999999999877532221 1223556677777888999999999999999999864210
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHH
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYL 520 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~ 520 (703)
. ...+....+... ..|+...|..++..|..-...+-|..-+
T Consensus 233 -~--------E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~ld~w~~~~ 273 (282)
T PF14938_consen 233 -R--------EYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISRLDNWKTKM 273 (282)
T ss_dssp -H--------HHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS---HHHHHH
T ss_pred -H--------HHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCccHHHHHHH
Confidence 0 122333322222 3345555666666665444455555433
No 161
>KOG4340|consensus
Probab=98.36 E-value=0.001 Score=62.56 Aligned_cols=161 Identities=14% Similarity=0.021 Sum_probs=111.7
Q ss_pred hcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 25 LRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 25 ~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
+.+|.+--....++-.+- ..++..|-..|+.....+|.-.+.-.-+++.+-.. +.+.+|.++.... .
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A--------~i~ADALrV~~~~----~ 105 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA--------CIYADALRVAFLL----L 105 (459)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh--------cccHHHHHHHHHh----c
Confidence 578888777777777666 88899999999999999998887776666554332 4455666655443 3
Q ss_pred CCHHHHHHHHH----HHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH-H
Q psy6461 104 KMPRIWLDYGR----FLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE-D 178 (703)
Q Consensus 104 ~~~~~~~~~~~----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~ 178 (703)
+++.+...-.+ +..+.+++..++.+.++ .|..+........+.+..+.|+++.|.+-|+.+++...-.+- +
T Consensus 106 D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllA 181 (459)
T KOG4340|consen 106 DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLA 181 (459)
T ss_pred CCHHHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhH
Confidence 33444433333 33456788888888775 564334455555666666889999999999999987654443 3
Q ss_pred HH-HH-HHhcCCHHHHHHHHHHhhc
Q psy6461 179 YI-EY-LSSIERLDEAAVKLAYIVN 201 (703)
Q Consensus 179 ~~-~~-~~~~~~~~~A~~~~~~~~~ 201 (703)
|. .+ ..+.++++.|.+..+++++
T Consensus 182 YniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 182 YNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 32 22 2578999999999998874
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.35 E-value=1.5e-05 Score=72.51 Aligned_cols=116 Identities=10% Similarity=0.001 Sum_probs=91.9
Q ss_pred CCchhhHHHHhcCCCC--hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccCCCCchhH
Q psy6461 15 EEDLPYEEEILRNPFS--VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY---KLWYNYLKLRRKQVKGKVITDPSY 88 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~--~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~---~~w~~~~~~~~~~~~~~~~~~~~~ 88 (703)
.....+.+.++.++.+ ...|..++.... .+++++|...|++++...|++. ..|..++..+... |++
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~--------g~~ 88 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN--------GEH 88 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc--------CCH
Confidence 3334555555667766 577788888887 8999999999999999987643 4777777766543 899
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------hccChH-------HHHHHHHHHHHhCCc
Q psy6461 89 EDVNNTFERSLVFMHKMPRIWLDYGRFLM-------DQHKIT-------QTRHVFDRALRALPI 138 (703)
Q Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------~~~~~~-------~A~~~~~~al~~~p~ 138 (703)
++|...|++++...|.....|..++.++. ..|+++ +|..+|++++..+|.
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999888 666655 667777778887884
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.34 E-value=0.0002 Score=69.02 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccccc-ccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 104 KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHH-RVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
.++..+...+.-....|++++|...|++.+...|.+... .....++..+.+.++++.|+..+++.++.+|+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 356777778888888999999999999999999964221 12234455555889999999999999999999864
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.33 E-value=2.2e-06 Score=67.58 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHK--MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
|+++.|...|+++++..|. +...|..++.++...|++++|..++++ ++..| .+......+++++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555555553 234455555555555555555555555 44444 223333344555555555555555
Q ss_pred HHHH
Q psy6461 164 VFRR 167 (703)
Q Consensus 164 ~~~~ 167 (703)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.32 E-value=1.7e-06 Score=64.41 Aligned_cols=52 Identities=27% Similarity=0.478 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
|++++|...|+++++..|+++.+|..+|.++..+|++++|..+|+++++..|
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4555555555555555555555555555555555555555555555555555
No 166
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.32 E-value=0.00021 Score=67.09 Aligned_cols=72 Identities=13% Similarity=0.232 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc-ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ-HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
++..+...|.-.+..|++++|...|++.+...|.+. .+.+...++..+...|+++.|+..|++.++.+|++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 456677778888899999999999999999988642 245556666666788999999999999999999886
No 167
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.32 E-value=7.3e-07 Score=83.50 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=85.6
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..|.+..-..|+|+..|..|+.+.. .+.+.+..++|..+++.+|.++++|+-.+.++... .++++.++++|.
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~-------~ani~s~Ra~f~ 166 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE-------IANIESSRAMFL 166 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhh-------hccHHHHHHHHH
Confidence 4677888889999999999999999 88999999999999999999999999888776654 478999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHh
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMD 118 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~ 118 (703)
++++.+|++|.+|..|.+++..
T Consensus 167 ~glR~N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 167 KGLRMNSRSPRIWIEYFRMELM 188 (435)
T ss_pred hhhccCCCCchHHHHHHHHHHH
Confidence 9999999999999999998765
No 168
>KOG3616|consensus
Probab=98.31 E-value=0.008 Score=63.53 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 459 (703)
.|-..+.-|...|+++.|..+|.++ .++..-+.+|.+.|+++.|.++-.++...
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~------------~~~~dai~my~k~~kw~da~kla~e~~~~ 820 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA------------DLFKDAIDMYGKAGKWEDAFKLAEECHGP 820 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc------------chhHHHHHHHhccccHHHHHHHHHHhcCc
Confidence 3445577777899999999999875 33455567788999999999988876543
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.29 E-value=3.3e-05 Score=82.56 Aligned_cols=153 Identities=12% Similarity=0.058 Sum_probs=112.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------cChHH
Q psy6461 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ--------HKITQ 124 (703)
Q Consensus 53 ~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------~~~~~ 124 (703)
.+++...-|.+.+.|..|++-.... .. ...++...|+.+|++|++.+|++..+|..++.++... .+...
T Consensus 326 ~~~~~~~~~~~~~Ay~~~lrg~~~~-~~--~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 326 QERLQQGLPHQGAALTLFYQAHHYL-NS--GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 4455577889999998888764321 11 1235688999999999999999998888876655332 23455
Q ss_pred HHHHHHHHHHh--CCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q psy6461 125 TRHVFDRALRA--LPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNK 202 (703)
Q Consensus 125 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 202 (703)
+....++++.. +| ..+.++..++......|++++|...|++++..+|. .
T Consensus 403 a~~~~~~a~al~~~~--~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~-------------------------- 453 (517)
T PRK10153 403 LSTELDNIVALPELN--VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-W-------------------------- 453 (517)
T ss_pred HHHHHHHhhhcccCc--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-H--------------------------
Confidence 66666666664 44 33566777766666778888888888888887763 2
Q ss_pred cccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc
Q psy6461 203 ESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282 (703)
Q Consensus 203 ~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 282 (703)
..|..+|.++...|++++|...|++++...
T Consensus 454 --------------------------------------------------~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 454 --------------------------------------------------LNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred --------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 468888999999999999999999999998
Q ss_pred CCccc
Q psy6461 283 TTVRD 287 (703)
Q Consensus 283 ~~~~~ 287 (703)
|....
T Consensus 484 P~~pt 488 (517)
T PRK10153 484 PGENT 488 (517)
T ss_pred CCCch
Confidence 87664
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.28 E-value=0.00027 Score=68.01 Aligned_cols=206 Identities=8% Similarity=-0.102 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+..++..|.-....|++++|+..|++++...|.++ ......+.++..+.+.+++++|+..+++.++..|++-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~------ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP------ 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC------
Confidence 455667778888889999999999999999999875 2234567888889999999999999999999999861
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
+.+.+++..+......+.. .+..+...+ ...........|...|++.++..|++.
T Consensus 104 --------~~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~------------~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 104 --------NIDYVLYMRGLTNMALDDS-----ALQGFFGVD------------RSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred --------chHHHHHHHHHhhhhcchh-----hhhhccCCC------------ccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 1234444444332222210 000000000 000001112567789999999999862
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH-HHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR-QMCLK 629 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~ 629 (703)
+..- |...+..+......+ ++ .-+.++.+.|.+..|..-|+.+++..|+.+.. +....
T Consensus 159 ----ya~~------------A~~rl~~l~~~la~~---e~--~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~ 217 (243)
T PRK10866 159 ----YTTD------------ATKRLVFLKDRLAKY---EL--SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPL 217 (243)
T ss_pred ----hHHH------------HHHHHHHHHHHHHHH---HH--HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 1111 111111111111110 11 12344555677888888888888888877753 35666
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q psy6461 630 FAEMETKLGEIDRARAIYAH 649 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~ 649 (703)
.+..+...|..++|..+...
T Consensus 218 l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 218 MENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCChHHHHHHHHH
Confidence 67778888988888877653
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=2.4e-06 Score=64.32 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLS 150 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 150 (703)
|++++|...|++++..+|+++.+++.++.++...|++++|+.++++++...|+ ++.+|..++.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~--~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD--NPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT--HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--HHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999994 3566655543
No 172
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.24 E-value=0.00013 Score=68.54 Aligned_cols=194 Identities=15% Similarity=0.030 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+..+...|..+...|++.+|+..|++++...|.++ -.....+.++..+.+.|++++|+..+++.+...|++-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~------ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP------ 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc------
Confidence 355677778888899999999999999999988775 3347788889999999999999999999999999851
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
..+.+++..+........ ..+ ......+...+|...|+..++..|++.
T Consensus 77 --------~~~~A~Y~~g~~~~~~~~-----~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 77 --------KADYALYMLGLSYYKQIP-----GIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp --------THHHHHHHHHHHHHHHHH-----HHH--------------------TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred --------chhhHHHHHHHHHHHhCc-----cch-------------------hcccChHHHHHHHHHHHHHHHHCcCch
Confidence 113333333332221100 000 000012234688889999999999872
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH-HHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR-QMCLK 629 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~ 629 (703)
+. .+|...+..+....-.+ .+ ..+.++.+.|.+..|..-++.+++..|+.+.. +.+..
T Consensus 125 ----y~------------~~A~~~l~~l~~~la~~---e~--~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~ 183 (203)
T PF13525_consen 125 ----YA------------EEAKKRLAELRNRLAEH---EL--YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALAR 183 (203)
T ss_dssp ----TH------------HHHHHHHHHHHHHHHHH---HH--HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred ----HH------------HHHHHHHHHHHHHHHHH---HH--HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 11 11111111111111110 11 12344445667777777777777777776643 35566
Q ss_pred HHHHHHHcCCHHHHH
Q psy6461 630 FAEMETKLGEIDRAR 644 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~ 644 (703)
++..+.+.|..+.|.
T Consensus 184 l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 184 LAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHTT-HHHHH
T ss_pred HHHHHHHhCChHHHH
Confidence 666777777766443
No 173
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=2.4e-05 Score=79.83 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=84.3
Q ss_pred HHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 38 IEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 38 ~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
+.+.. .++++.|+.+|++..+.+|+ .+..+++..... ++-.+|.+++.++++..|.+..++...+.++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~--------~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLM--------NEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc--------CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444 67788888888888887775 334445544321 4456778888888888888888888888888
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR 167 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 167 (703)
++.++++.|..+.+++.+..|. .-..|..++.+|...|+++.|+..+..
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~--~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPS--EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8888888888888888888884 467788888888888888877766654
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.23 E-value=2.8e-06 Score=67.00 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=65.4
Q ss_pred ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHH---HHHHHHhcCCHHHHHHH
Q psy6461 119 QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERLDEAAVK 195 (703)
Q Consensus 119 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~A~~~ 195 (703)
+|+++.|..+|++++...|.+.....|..++.++...|++++|+.++++ .+.+|.+... +...+...|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999999999999999532566788889999999999999999999 8788877553 23556899999999999
Q ss_pred HHHh
Q psy6461 196 LAYI 199 (703)
Q Consensus 196 ~~~~ 199 (703)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9864
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.22 E-value=4e-06 Score=63.08 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=58.5
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGR 114 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 114 (703)
.|++++|...|+++++.+|++.++|..++.++... |++++|...+++++...|+++.+|..+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ--------GQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT--------T-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 68999999999999999999999999999998875 99999999999999999999888877665
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.21 E-value=0.00012 Score=63.86 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=118.2
Q ss_pred chhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhccChH
Q psy6461 45 PKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF-MHKMPRIWLDYGRFLMDQHKIT 123 (703)
Q Consensus 45 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~ 123 (703)
|+++......+.+...|...+- +.+++...+ .|++.+|...|++++.- ..+++.+.+.+++..+..++..
T Consensus 71 dP~R~~Rea~~~~~~ApTvqnr-~rLa~al~e--------lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 71 DPERHLREATEELAIAPTVQNR-YRLANALAE--------LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHHH-HHHHHHHHH--------hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 3444444444555555543322 233333333 38999999999999987 5789999999999999999999
Q ss_pred HHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH--HHHHHHHhcCCHHHHHHHHHHhh
Q psy6461 124 QTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE--DYIEYLSSIERLDEAAVKLAYIV 200 (703)
Q Consensus 124 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~A~~~~~~~~ 200 (703)
.|...+++..+.+|.-..++....+++.+...|.+..|+..|+.++...|+... .|..++...|+..++...+..+.
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999999999999997677888999999999999999999999999999998765 46788999999999988887765
No 177
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=2.4e-05 Score=79.84 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=100.9
Q ss_pred CChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHH
Q psy6461 530 TKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQ 609 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 609 (703)
++++.|+.+|++..+.+|+ +...++.++...++-.+|++++.++++..|.+ ..+......++...++++.|..
T Consensus 183 ~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHH
Confidence 4579999999999999876 45668888888999999999999999999987 5678888999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 610 IYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 610 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
+.+++++..|++.. .|..++.++.+.|++++|...+..|
T Consensus 256 iAk~av~lsP~~f~--~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 256 IAKKAVELSPSEFE--TWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHhCchhHH--HHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999766 8999999999999999999888755
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.18 E-value=3.6e-05 Score=74.59 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc-
Q psy6461 64 YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT- 139 (703)
Q Consensus 64 ~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 139 (703)
...|...+..+... .|++++|...|++.++..|++ +.++..+|.++...|++++|...|+++++..|.+
T Consensus 142 e~~~Y~~A~~l~~~-------~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 142 ANTDYNAAIALVQD-------KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 35666665543211 278999999999999999998 5899999999999999999999999999998853
Q ss_pred cccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 140 QHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
..+.+|..++.++...|+.+.|+..|+++++..|++..
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 23677777788888899999999999999999999863
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.15 E-value=4.3e-05 Score=74.06 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHh-h-cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 30 SVKHWLRYIEHK-K-NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 30 ~~~~w~~~~~~~-~-~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
+...+...+... . .+++++|...|+++++.+|++ +..+..++..+... |++++|...|+++++..|+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~--------g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK--------GKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHCCC
Confidence 457777776654 4 799999999999999999998 34555555554443 8999999999999999877
Q ss_pred ---CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc
Q psy6461 105 ---MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT 139 (703)
Q Consensus 105 ---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 139 (703)
.+.+|..++.++...|+.++|+.+|+++++..|.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 56889999999999999999999999999999964
No 180
>PRK11906 transcriptional regulator; Provisional
Probab=98.15 E-value=6.2e-05 Score=76.34 Aligned_cols=146 Identities=11% Similarity=0.028 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHH---HhCCCcchHHHHHHHHHHHHH-------cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 532 LERARDLFEQCL---EACPPRYAKTLYLLYAKLEEE-------HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 532 ~~~A~~~~~~al---~~~p~~~~~~~~~~~a~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
.++|..+|.+|+ ..+|+...+..++.+.++... .....+|+..-++|++.+|.|+......+.+... .
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~--~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL--S 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--h
Confidence 478999999999 889988433333333333321 2235678889999999999987665555555554 4
Q ss_pred cCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHH
Q psy6461 602 YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMRE 681 (703)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 681 (703)
++++.|...|++|+..+|+... .|..++.+..-.|+.++|+...++|++..|-.....+...|.+.+..++ .+++.+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~--~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIAS--LYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHH--HHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 5799999999999999999766 8999999999999999999999999999665555677777775555444 334443
Q ss_pred H
Q psy6461 682 M 682 (703)
Q Consensus 682 ~ 682 (703)
+
T Consensus 429 ~ 429 (458)
T PRK11906 429 L 429 (458)
T ss_pred H
Confidence 3
No 181
>KOG4340|consensus
Probab=98.15 E-value=0.0078 Score=56.92 Aligned_cols=147 Identities=15% Similarity=0.074 Sum_probs=76.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
..+++.|+.++.--.+..|.+-.....++-++-.. .++..|..-|++.-...|.-....+-+++-+.+.+.+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~--------Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRL--------QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 45566677777777777775544433333322221 4577777777777777777666666667777777777
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CHHHHHH---HHHhcCCHHHHHHHHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE--DAEDYIE---YLSSIERLDEAAVKLA 197 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~---~~~~~~~~~~A~~~~~ 197 (703)
..|.++...... .|. -.......-+.+....++.-.++.+.++ -|. .....+. +....|++++|.+.|+
T Consensus 95 ADALrV~~~~~D-~~~-L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 95 ADALRVAFLLLD-NPA-LHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHHHhcC-CHH-HHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHH
Confidence 777766654432 121 0111111112222234444444444433 232 1112222 2346677777777777
Q ss_pred Hhhccc
Q psy6461 198 YIVNKE 203 (703)
Q Consensus 198 ~~~~~~ 203 (703)
.++...
T Consensus 169 aAlqvs 174 (459)
T KOG4340|consen 169 AALQVS 174 (459)
T ss_pred HHHhhc
Confidence 776433
No 182
>PRK15331 chaperone protein SicA; Provisional
Probab=98.11 E-value=5.4e-05 Score=65.73 Aligned_cols=99 Identities=6% Similarity=-0.039 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
..+.-..++-..- +|+++.|...|.-.+..+|.+++.|..++..+... +++++|...|..|....+++|..
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~--------k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK--------KQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHcccCCCCc
Confidence 3344444443333 78888888888888888888888888888776654 77888888888888888888888
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
....|.+++..|+.+.|+..|+.++. .|
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~ 135 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RT 135 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Cc
Confidence 88888888888888888888888877 45
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.11 E-value=0.012 Score=57.88 Aligned_cols=289 Identities=15% Similarity=0.088 Sum_probs=170.1
Q ss_pred chhHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKM--PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
.|+-..|++.-.++-+....+ |-+.+.-++.-+-.|+++.|++-|+..+. +|....-.+--.|+... +.|..+.|+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq-r~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ-RLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH-hcccHHHHH
Confidence 477788898888887665443 44555556666678999999999998887 88532222222233322 478889999
Q ss_pred HHHHHHHhhCCCCHHHHH---HHHHhcCCHHHHHHHHHHhhccccccc-ccCCc-hhhhHHHHHHHHhcCccccccccHH
Q psy6461 163 RVFRRYLKLFPEDAEDYI---EYLSSIERLDEAAVKLAYIVNKESFVS-KHGKS-NHQLWNELCEMISQNPDKIRSLNVD 237 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~-~~~~w~~~~~~l~~~~~~~~~~~~~ 237 (703)
..-+++-..-|.-.-++. .-....|++++|+++.+......-... ...+. .+-+-.....++..+|. .+.
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~-----~Ar 249 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA-----SAR 249 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH-----HHH
Confidence 999999998888765543 334678999999999875542110000 00000 01111111222222322 111
Q ss_pred HHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy6461 238 AIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPS 317 (703)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~ 317 (703)
.......+-. ......-..-+..+.+.|+..++..+++.+-+..|++. ++..|...
T Consensus 250 ~~A~~a~KL~-pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~a------------------- 305 (531)
T COG3898 250 DDALEANKLA-PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD----IALLYVRA------------------- 305 (531)
T ss_pred HHHHHHhhcC-CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH----HHHHHHHh-------------------
Confidence 1122222211 22344555667777888888888888888888777643 33333321
Q ss_pred CcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHH--HHhcCCCccCCchhHHH
Q psy6461 318 EEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEA--VKTVDPKLAVGKLHTLW 395 (703)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a--~~~~~~~~~~~~~~~~~ 395 (703)
-.|+. +++.++++ +..+.| ++....
T Consensus 306 ----------------------------------------------r~gdt--a~dRlkRa~~L~slk~-----nnaes~ 332 (531)
T COG3898 306 ----------------------------------------------RSGDT--ALDRLKRAKKLESLKP-----NNAESS 332 (531)
T ss_pred ----------------------------------------------cCCCc--HHHHHHHHHHHHhcCc-----cchHHH
Confidence 11221 22222222 222233 233344
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCC
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA-GQEEAALRLMARATATPAR 462 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~ 462 (703)
+..+..-...|++..|+.--+.+....|.. .++..++.++.-. |+-.+++.++-++++...+
T Consensus 333 ~~va~aAlda~e~~~ARa~Aeaa~r~~pre-----s~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 333 LAVAEAALDAGEFSAARAKAEAAAREAPRE-----SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhhCchh-----hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 555666667788888888888888777764 6788888877654 8888888888888876543
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.10 E-value=0.00016 Score=71.88 Aligned_cols=209 Identities=17% Similarity=0.156 Sum_probs=123.2
Q ss_pred HHHHHHcCChHHHHHHHHHhhccC--CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVP--YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
|..+...|++++|...|.++.... -++...-...+...+.++.+. ++++|...+++|+...-....
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~----------- 109 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR----------- 109 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-----------
Confidence 556666788888888888775542 223222345566666665444 888999999888765321100
Q ss_pred HHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc----chH
Q psy6461 477 VYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR----YAK 552 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~ 552 (703)
.......+...+.+++.. .+++++|++.|++|+...... ...
T Consensus 110 ~~~aA~~~~~lA~~ye~~----------------------------------~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQ----------------------------------LGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHHHHHHCCT----------------------------------T--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------------------------cCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 001133444444444443 034589999999999863221 124
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch--HH---HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC---cchH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE--MF---EMFNIYIKKAAEIYGIPKTRQIYERAIESLPE---EPTR 624 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 624 (703)
..+...+.++...|++++|..+|++.....-.+. .. ..+...+-...-.|+...|+..+++....+|. +...
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 6889999999999999999999999987643321 11 22222233334468899999999999988873 3233
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHhcc
Q psy6461 625 QMCLKFAEMETK--LGEIDRARAIYAHCSQI 653 (703)
Q Consensus 625 ~~~~~~a~~~~~--~g~~~~A~~~~~~a~~~ 653 (703)
.+...++..... ...++.|..-|++...+
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 344444443332 23477777777665444
No 185
>KOG3616|consensus
Probab=98.07 E-value=0.025 Score=60.03 Aligned_cols=274 Identities=16% Similarity=0.166 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH-HHHH---H
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE-DYIE---Y 182 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~---~ 182 (703)
..+-..+..+...|+++.|.++|-++ .++...+.+|.+.|+++.|-++-.+... |.... .|+. =
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaed 833 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAED 833 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHh
Confidence 34445567777778888888888753 3456667777788888877766555432 33322 3332 2
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (703)
+...|++.+|.++|--+-..+ .. +....++. ..+.+++..-+..++...+....++.-+
T Consensus 834 ldehgkf~eaeqlyiti~~p~--------~a-------iqmydk~~------~~ddmirlv~k~h~d~l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIGEPD--------KA-------IQMYDKHG------LDDDMIRLVEKHHGDHLHDTHKHFAKEL 892 (1636)
T ss_pred HHhhcchhhhhheeEEccCch--------HH-------HHHHHhhC------cchHHHHHHHHhChhhhhHHHHHHHHHH
Confidence 356778887777763321100 00 01111111 1223444444444555567788899999
Q ss_pred HHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6461 263 IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL 342 (703)
Q Consensus 263 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (703)
...|++..|...|-++-.-... ..+|.....++..+.-+.. ..+.+ .+-........+
T Consensus 893 e~~g~lkaae~~flea~d~kaa----vnmyk~s~lw~dayriakt-----egg~n----~~k~v~flwaks--------- 950 (1636)
T KOG3616|consen 893 EAEGDLKAAEEHFLEAGDFKAA----VNMYKASELWEDAYRIAKT-----EGGAN----AEKHVAFLWAKS--------- 950 (1636)
T ss_pred HhccChhHHHHHHHhhhhHHHH----HHHhhhhhhHHHHHHHHhc-----ccccc----HHHHHHHHHHHh---------
Confidence 9999999999888775543221 1233322223322211000 00000 000000000000
Q ss_pred hhhhhhcCCC-cHHHHHHHH------hhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHH
Q psy6461 343 NSVLLRQNPH-NVLEWHKRV------RLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARL 413 (703)
Q Consensus 343 ~~~~l~~~p~-~~~~~~~~~------~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 413 (703)
...+ .+.+..+.. .+. .+.++-|-+.-+-+.+. ..+.+++.++.+++..|.+++|-+
T Consensus 951 ------iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--------k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 951 ------IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--------KMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred ------hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--------cCccchhHHhhhhhhccchhhhhH
Confidence 0000 000011111 110 13344444444433332 245688999999999999999999
Q ss_pred HHHHhhccCCCCcchHHHHHHHHH-----HHHHHcC-CHHHHHHHHH
Q psy6461 414 IFDKATLVPYTKVEDLATVWCEWA-----ELELRAG-QEEAALRLMA 454 (703)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~A~~~~~ 454 (703)
.|-.+++++.-|. .|++-. .-.++.| ++++|..+|-
T Consensus 1017 hyveaiklntyni-----twcqavpsrfd~e~ir~gnkpe~av~mfi 1058 (1636)
T KOG3616|consen 1017 HYVEAIKLNTYNI-----TWCQAVPSRFDAEFIRAGNKPEEAVEMFI 1058 (1636)
T ss_pred hhHHHhhcccccc-----hhhhcccchhhHHHHHcCCChHHHHHHhh
Confidence 9999999875442 344321 1113444 5666666653
No 186
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.00 E-value=0.001 Score=59.74 Aligned_cols=196 Identities=19% Similarity=0.210 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
..+.+..|.+|-..|-..-|+.-|.+++.+.|.-+ .+++-+|-.+...|+++.|.+.|+..++.+|..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~----~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-------- 132 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-------- 132 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH----HHHHHHHHHHHhcccchHHHHHhhhHhccCCcc--------
Confidence 33455556677777888889999999999999887 899999999999999999999999999999973
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
.|+.+ .|+|..+ -.|++.-|.+-+.+--..+|+++-
T Consensus 133 --------------~Ya~l----------NRgi~~Y--------------------Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 133 --------------NYAHL----------NRGIALY--------------------YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred --------------hHHHh----------ccceeee--------------------ecCchHhhHHHHHHHHhcCCCChH
Confidence 12111 1222111 135668888888888888998854
Q ss_pred HHHHHHHHHHHHHcCChHHHHH-HHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch-----HH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMA-VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT-----RQ 625 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~ 625 (703)
..+|+.+.. ..-++.+|.. +.+|+.+...+ .|-.++--.. .|.+ .-..+++++.+...++.. .+
T Consensus 169 R~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e-----~WG~~iV~~y-Lgki-S~e~l~~~~~a~a~~n~~~Ae~LTE 238 (297)
T COG4785 169 RSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKE-----QWGWNIVEFY-LGKI-SEETLMERLKADATDNTSLAEHLTE 238 (297)
T ss_pred HHHHHHHHH---hhCCHHHHHHHHHHHHHhccHh-----hhhHHHHHHH-Hhhc-cHHHHHHHHHhhccchHHHHHHHHH
Confidence 456666543 4457777766 55777766543 2322222111 2222 234566777666555432 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 626 MCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.+..++..+...|+.++|..+|+-|+..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 5667778888899999999999998875
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.97 E-value=0.00018 Score=60.08 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcc-hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch-HHHHHHHH
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT-RQMCLKFA 631 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~a 631 (703)
+++..+..+...|+.++|+..|++++...... .....+..+...+...|++++|..++++++..+|+++. ..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 56777888888899999999999988865433 23455666667777788899999999999888887321 22666677
Q ss_pred HHHHHcCCHHHHHHHHHHHhc
Q psy6461 632 EMETKLGEIDRARAIYAHCSQ 652 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~ 652 (703)
..+...|+.++|..++-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 788889999999998877765
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.96 E-value=3.8e-05 Score=58.66 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=57.0
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
..++...+++++|+.++++++..+|.++ .+|..+|.++.+.|++++|+..|+++++..|++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP----ELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc----hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 4567789999999999999999999998 999999999999999999999999999999985
No 189
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.0011 Score=59.45 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=131.5
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
..+-++|.-.|||.+- -+|..+| .-|+..|.+++.+.|+.|.+++-+|-.+...|++
T Consensus 59 l~~eeRA~l~fERGvl--YDSlGL~---------------------~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f 115 (297)
T COG4785 59 LTDEERAQLLFERGVL--YDSLGLR---------------------ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 115 (297)
T ss_pred CChHHHHHHHHHhcch--hhhhhHH---------------------HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc
Confidence 3567889999999863 2344444 3478889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHH--HHHHHHhcCCHHHHHHHHH-Hh
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED--YIEYLSSIERLDEAAVKLA-YI 199 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~~~~~~~~~~~A~~~~~-~~ 199 (703)
+.|-..|+..++.+|+.+...+-..++-+ =-|++.-|..-+.+.-+.+|+++-. |.-+-...-+..+|..-+. ..
T Consensus 116 daa~eaFds~~ELDp~y~Ya~lNRgi~~Y--Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~ 193 (297)
T COG4785 116 DAAYEAFDSVLELDPTYNYAHLNRGIALY--YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRA 193 (297)
T ss_pred hHHHHHhhhHhccCCcchHHHhccceeee--ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 99999999999999964222222222222 3478899999999999999999853 3333334456677765553 33
Q ss_pred hcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhc------cchhhHHHHHHHHHHHhCchHHHHH
Q psy6461 200 VNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYT------DQLGHLWNSLADYYIRSGLFERARD 273 (703)
Q Consensus 200 ~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~ 273 (703)
... +.+.|--.+.-..- ..+..+++.+....... +--.+.++-+|..+...|+.++|..
T Consensus 194 ~~~----------d~e~WG~~iV~~yL-----gkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 194 EKS----------DKEQWGWNIVEFYL-----GKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred Hhc----------cHhhhhHHHHHHHH-----hhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 211 11223222111000 01122333332222211 1124678999999999999999999
Q ss_pred HHHHHHhh
Q psy6461 274 IYEEAIQT 281 (703)
Q Consensus 274 ~~~~~l~~ 281 (703)
+|+-++..
T Consensus 259 LfKLaian 266 (297)
T COG4785 259 LFKLAVAN 266 (297)
T ss_pred HHHHHHHH
Confidence 99998874
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=0.0011 Score=57.94 Aligned_cols=127 Identities=16% Similarity=0.145 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPY-TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+-.+.++..+.+.|++.+|+..|++++.-.+ .++ .+.+.+++..+..+++..|...+++..+.+|..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~------- 157 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF------- 157 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-------
Confidence 44567888888899999999999999988633 343 788889999999999999999999999988874
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
++++-...++..+...|.. ..|+..|+.++...|+
T Consensus 158 --------r~pd~~Ll~aR~laa~g~~-----------------------------------a~Aesafe~a~~~ypg-- 192 (251)
T COG4700 158 --------RSPDGHLLFARTLAAQGKY-----------------------------------ADAESAFEVAISYYPG-- 192 (251)
T ss_pred --------CCCCchHHHHHHHHhcCCc-----------------------------------hhHHHHHHHHHHhCCC--
Confidence 2466667777777766653 8899999999999888
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVY 575 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~ 575 (703)
+...+.|+.++.+.|..++|..-+
T Consensus 193 -~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 193 -PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred -HHHHHHHHHHHHHhcchhHHHHHH
Confidence 578899999999999776665443
No 191
>KOG0543|consensus
Probab=97.92 E-value=0.00042 Score=68.66 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
++++++.++.+.+++..|+....++|...|+|+ ...+.-++.+...|+++.|+..|.++++..|.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~----KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNV----KALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 578899999999999999999999999999998 889999999999999999999999999999985
No 192
>KOG2053|consensus
Probab=97.92 E-value=0.058 Score=59.02 Aligned_cols=221 Identities=11% Similarity=0.058 Sum_probs=112.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.+.+.+|.+...+.++.+|+..-.-..-+-.+.+. |..++|...++..-..-|++....--+-.++...++.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~--------gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRL--------GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHh--------cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 56677888888888888887754433322222222 6667777666543333455555555666777777888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh----HHHHHHHHHHHhhCCCCHH-HH--HHHHHh-c---CC---
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP----ETAVRVFRRYLKLFPEDAE-DY--IEYLSS-I---ER--- 188 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~l~~~p~~~~-~~--~~~~~~-~---~~--- 188 (703)
++|..+|+++++.+|. ..+...+...+.+.+++ ..|.++|+ ..|.+.. .| ++++.. . ..
T Consensus 94 d~~~~~Ye~~~~~~P~---eell~~lFmayvR~~~yk~qQkaa~~LyK----~~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPS---EELLYHLFMAYVREKSYKKQQKAALQLYK----NFPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred hHHHHHHHHHHhhCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCcccchHHHHHHHHHHhccCCccccc
Confidence 8888888888888874 23333333333343433 33455555 4555543 23 222210 0 00
Q ss_pred ---HHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHh
Q psy6461 189 ---LDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRS 265 (703)
Q Consensus 189 ---~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (703)
.-=|.+..+.++..++.. .......++..........+. ..+.+........+..+...-+.-.+++...
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~--~s~aE~~Lyl~iL~~~~k~~e-----al~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKI--ESEAEIILYLLILELQGKYQE-----ALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred chhHHHHHHHHHHHhccCCcc--chHHHHHHHHHHHHhcccHHH-----HHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 112444555555332100 000111122222222211111 1111112222223333333444567788888
Q ss_pred CchHHHHHHHHHHHhhcCCc
Q psy6461 266 GLFERARDIYEEAIQTVTTV 285 (703)
Q Consensus 266 ~~~~~A~~~~~~~l~~~~~~ 285 (703)
+++.+.-++-.+++...++.
T Consensus 240 ~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred cChHHHHHHHHHHHHhCCcc
Confidence 99999999999999887763
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.88 E-value=7.6e-05 Score=56.95 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=56.8
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYG 113 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 113 (703)
++++++|..+++++++.+|.++.+|..++.++... |++++|...|+++++..|+++......+
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--------g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQL--------GRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh--------ccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 89999999999999999999999999999998765 8999999999999999999887654443
No 194
>KOG0543|consensus
Probab=97.77 E-value=0.00055 Score=67.87 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCC----Ccch-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYT----KVED-------LATVWCEWAELELRAGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
-..|..+.+.|++..|...|++|++.... +..+ ...+++.++..+++.+.+.+|+....+++...|++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N- 290 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN- 290 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc-
Confidence 44577888899999999999998776321 1100 12345566666666677777777777777777664
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
....+..+..+...+++ +.|+..|+++++
T Consensus 291 ----------------~KALyRrG~A~l~~~e~-----------------------------------~~A~~df~ka~k 319 (397)
T KOG0543|consen 291 ----------------VKALYRRGQALLALGEY-----------------------------------DLARDDFQKALK 319 (397)
T ss_pred ----------------hhHHHHHHHHHHhhccH-----------------------------------HHHHHHHHHHHH
Confidence 55555556555554443 667777777777
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCh-HHHHHHHHHHhhccC
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHGLA-RHAMAVYERATGAVL 583 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~p 583 (703)
..|.| ..+...++.+-.+...+ ++.+++|.+++...+
T Consensus 320 ~~P~N--ka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 320 LEPSN--KAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77776 44555555554443333 233555555555443
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.77 E-value=0.0007 Score=56.61 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
.+++..|..+...|+.++|+.+|++++....... .....++.++..+...|++++|..++++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3577888888899999999999999988754432 33478889999999999999999999999988786
No 196
>KOG1130|consensus
Probab=97.76 E-value=0.0024 Score=62.87 Aligned_cols=94 Identities=10% Similarity=-0.085 Sum_probs=60.1
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc--CCCCcchHHHHHHHHHHHHHHc
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV--PYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
|+++.++..-+.-+..-..-.....-..++.+++..+.-.|+++.|++.|++.+.+ .-.+...-+...+.++..|.-.
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll 288 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL 288 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH
Confidence 66666666555433321000000012346777888888899999999999987654 2222222245677888888888
Q ss_pred CCHHHHHHHHHHHhcC
Q psy6461 444 GQEEAALRLMARATAT 459 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~ 459 (703)
..+++|+..+.+-+.+
T Consensus 289 ~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 289 KEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999998886654
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.74 E-value=5.3e-05 Score=50.88 Aligned_cols=42 Identities=17% Similarity=0.384 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHH
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAE 438 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 438 (703)
.+|+.+|..|...|++++|+.+|+++++.+|+++ .+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~----~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP----EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH----HHHHHhhh
Confidence 5789999999999999999999999999999998 88988875
No 198
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.72 E-value=0.01 Score=55.62 Aligned_cols=72 Identities=13% Similarity=-0.033 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
.+..|..-|.-....|++++|...|+.+.+.+|.++-. ....+.++-..++.++++.|+..+++-+...|.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 45667777888888999999999999999998877633 5778888888899999999999999999999985
No 199
>KOG3081|consensus
Probab=97.72 E-value=0.038 Score=51.82 Aligned_cols=165 Identities=18% Similarity=0.160 Sum_probs=111.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHH
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQA 475 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 475 (703)
..-+.++...|++++|.+...++..+ ++.-.=..+..+..+++-|.+.++++.+.+.+.
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~l---------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~------------ 170 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENL---------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDA------------ 170 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH------------
Confidence 33355667888999998888874332 333333445567778888888888888887541
Q ss_pred HHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHH
Q psy6461 476 RVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLY 555 (703)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 555 (703)
....++ ..|..... +.+++..|--+|+....+.|.. +.+.
T Consensus 171 -------tLtQLA-------------------------~awv~la~------ggek~qdAfyifeE~s~k~~~T--~~ll 210 (299)
T KOG3081|consen 171 -------TLTQLA-------------------------QAWVKLAT------GGEKIQDAFYIFEELSEKTPPT--PLLL 210 (299)
T ss_pred -------HHHHHH-------------------------HHHHHHhc------cchhhhhHHHHHHHHhcccCCC--hHHH
Confidence 111121 12222221 2345688999999999977665 6788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHhCCCcch
Q psy6461 556 LLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK-TRQIYERAIESLPEEPT 623 (703)
Q Consensus 556 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~ 623 (703)
...+.+.+..|++++|..+++.++...++++ ......+......|..++ ......+....+|+++-
T Consensus 211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp--etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDP--ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 8999999999999999999999999999874 344444444444555433 34566677777888653
No 200
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.71 E-value=0.017 Score=55.45 Aligned_cols=204 Identities=20% Similarity=0.131 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhc--cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATL--VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
......+..+...+.+..+...+..++. ..+... ..+...+......+++..+...+.+++...+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 128 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLA----EALLNLGLLLEALGKYEEALELLEKALALDPDP------- 128 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH----HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-------
Confidence 3456666777778888888888888775 344433 677777788878888888888888888877653
Q ss_pred hhHHHHHHhhHHHHHHHHH-HHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC-
Q psy6461 471 ETVQARVYKSIKLWSLYAD-LEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP- 548 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 548 (703)
......... ++.. .++.+.|...|++++...|.
T Consensus 129 ----------~~~~~~~~~~~~~~-----------------------------------~~~~~~a~~~~~~~~~~~~~~ 163 (291)
T COG0457 129 ----------DLAEALLALGALYE-----------------------------------LGDYEEALELYEKALELDPEL 163 (291)
T ss_pred ----------chHHHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHhcCCCc
Confidence 111111111 2222 24458888888888776662
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 549 RYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCL 628 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 628 (703)
......+...+......|++..+...+.+++...+.. ....+......+...+.++.|...+.+++...|.... .+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 240 (291)
T COG0457 164 NELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAE--ALY 240 (291)
T ss_pred cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHH--HHh
Confidence 1113455555555667788888888888888888772 1223444444455556788888888888888886332 455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 629 KFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
..+..+...|..+.+...+.++++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 241 NLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 555555566778888888888888743
No 201
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.69 E-value=0.00027 Score=62.03 Aligned_cols=75 Identities=13% Similarity=-0.024 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--cccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q psy6461 46 KAIINTIYERSLKELPGSYKLWYNYLKLRRKQ--VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH 120 (703)
Q Consensus 46 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 120 (703)
|+.|++.++.....+|.+.+.+..++..+++. .........-+++|..-|+.||.++|+...+...+|+.+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 67899999999999999999888877666543 2111111245888999999999999999999999999987765
No 202
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.66 E-value=0.0097 Score=55.82 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh-------c
Q psy6461 86 PSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS-------H 155 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-------~ 155 (703)
|++++|...|+.+.+.+|.+ ..+.++++-...+.++++.|+...++-++..|++.+ .-|..|...... .
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~~~~ 126 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQIDDVT 126 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCCccc
Confidence 56666666666666665543 355556666666666666666666666666664322 223333332221 1
Q ss_pred CC---hHHHHHHHHHHHhhCCCCHH--------------------HHHHHHHhcCCHHHHHHHHHHhhcccccccccCCc
Q psy6461 156 AV---PETAVRVFRRYLKLFPEDAE--------------------DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKS 212 (703)
Q Consensus 156 ~~---~~~A~~~~~~~l~~~p~~~~--------------------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 212 (703)
.+ ...|..-|+..+...|++.- ....++.+.|.+..|...++.++..
T Consensus 127 rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~---------- 196 (254)
T COG4105 127 RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN---------- 196 (254)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc----------
Confidence 11 14455556666666666542 1235667778888888887777632
Q ss_pred hhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCc
Q psy6461 213 NHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTV 285 (703)
Q Consensus 213 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 285 (703)
.|+.. ...+....+.+.|...|-.++|...-+-+-...|+.
T Consensus 197 --------------y~~t~------------------~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 197 --------------YPDTS------------------AVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred --------------ccccc------------------chHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 11110 113566777788888888888766654444455553
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.66 E-value=0.00012 Score=49.11 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLK 72 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~ 72 (703)
+.+|..+++.+. .|++++|+.+|+++++.+|+++.+|..+++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368999999998 999999999999999999999999998764
No 204
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.65 E-value=0.0018 Score=54.99 Aligned_cols=113 Identities=20% Similarity=0.251 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHc----CChHHHHHHHHHHhhccCcch-------HHHHHHHHHHHHHH
Q psy6461 533 ERARDLFEQCLEACP-PRYAKTLYLLYAKLEEEH----GLARHAMAVYERATGAVLPEE-------MFEMFNIYIKKAAE 600 (703)
Q Consensus 533 ~~A~~~~~~al~~~p-~~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~ 600 (703)
++.++.|++.+.... .+.+...|..|....... |.-..-..++++++..+.++. -+.+|..|+.
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~---- 77 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD---- 77 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----
Confidence 344555666665544 222235666666554432 344555566666666654432 1234444443
Q ss_pred hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 601 IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
..+.++++|..+....-....+.+|..||.++.+.|++++|..+|++++
T Consensus 78 --~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 78 --LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 2336777777777765444455678888888888888888888887764
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=97.53 E-value=0.0013 Score=57.39 Aligned_cols=96 Identities=9% Similarity=-0.053 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEM 633 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~ 633 (703)
....+|.-+...|++++|..+|.-....+|.+ ...|.++...+...+++++|...|..|....+++|. .....+.+
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~--p~f~agqC 114 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR--PVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC--ccchHHHH
Confidence 34455555556777777777777777766666 345666666666677777777777777777777776 45566677
Q ss_pred HHHcCCHHHHHHHHHHHhcc
Q psy6461 634 ETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 634 ~~~~g~~~~A~~~~~~a~~~ 653 (703)
+...|+.+.|+..|+.+++.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 77777777788777777774
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.52 E-value=0.0029 Score=53.86 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc-cccHHHHHHHHHhcCC---
Q psy6461 85 DPSYEDVNNTFERSLVFMHK---MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH-HRVWPLYLSFVKSHAV--- 157 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~--- 157 (703)
.|++++|+..|+......|. .+.+.+.++-.+...+++++|...+++.++++|.+.. +.++...+-....+..
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~ 102 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSL 102 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHH
Confidence 38899999999999998875 4588888899999999999999999999999996432 1222222222222222
Q ss_pred ------------hHHHHHHHHHHHhhCCCCH
Q psy6461 158 ------------PETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 158 ------------~~~A~~~~~~~l~~~p~~~ 176 (703)
...|...|++.+...|++.
T Consensus 103 ~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 103 QSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 3567777888888888774
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.51 E-value=0.095 Score=50.04 Aligned_cols=220 Identities=21% Similarity=0.181 Sum_probs=153.1
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCCcccccchhhHHHHHHhhHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA--TPARPVAYHDEAETVQARVYKSIK 482 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~ 482 (703)
.+....+...+..++...+.. .........+..+...+++..+...+..+.. ..+. ...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 96 (291)
T COG0457 36 LGELAEALELLEEALELLPNS--DLAGLLLLLALALLKLGRLEEALELLEKALELELLPN-----------------LAE 96 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc--cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc-----------------hHH
Confidence 445566666777666665542 0015677777778889999999999998886 3443 245
Q ss_pred HHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHH-H
Q psy6461 483 LWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAK-L 561 (703)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~-~ 561 (703)
.+...+......++ +..+...+.+++...+... ........ +
T Consensus 97 ~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 139 (291)
T COG0457 97 ALLNLGLLLEALGK-----------------------------------YEEALELLEKALALDPDPD--LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHhh-----------------------------------HHHHHHHHHHHHcCCCCcc--hHHHHHHHHH
Confidence 55555555444433 3789999999999877762 34444444 7
Q ss_pred HHHcCChHHHHHHHHHHhhccCc-chHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHcCC
Q psy6461 562 EEEHGLARHAMAVYERATGAVLP-EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE-EPTRQMCLKFAEMETKLGE 639 (703)
Q Consensus 562 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~a~~~~~~g~ 639 (703)
+...|+++.|...|++++...|. .................++.+.+...+.+++...|. ... .+...+..+...|+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE--ALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchH--HHHHhhHHHHHccc
Confidence 88999999999999999886662 222223333333345578999999999999999988 344 78888888889999
Q ss_pred HHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 640 IDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 640 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
++.|...+.+++...+. ....+..........|..+.+...+.
T Consensus 218 ~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 218 YEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred HHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998544 23444444444445566777766653
No 208
>KOG3081|consensus
Probab=97.51 E-value=0.036 Score=51.97 Aligned_cols=104 Identities=11% Similarity=0.116 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHhCCCcch---HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 532 LERARDLFEQCLEACPPRYA---KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.|-|++.++++...+-+..- ...|+.++ ...+.+.+|.-+|+..-++.|.. ..+.++.+-..+..+++++|.
T Consensus 153 ~d~A~~~lk~mq~ided~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~~~T--~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKTPPT--PLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcccCCC--hHHHccHHHHHHHhcCHHHHH
Confidence 35555555555555444311 11222222 12233555555555555533332 223344444444455555555
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH
Q psy6461 609 QIYERAIESLPEEPTRQMCLKFAEMETKLGEIDR 642 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 642 (703)
.+.+.+|...|++|. .....+-.-...|...+
T Consensus 228 ~lL~eaL~kd~~dpe--tL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 228 SLLEEALDKDAKDPE--TLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHhccCCCHH--HHHHHHHHHHHhCCChH
Confidence 555555555555444 34444333334454433
No 209
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.48 E-value=0.0016 Score=55.28 Aligned_cols=111 Identities=17% Similarity=0.260 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhccC-cchHHHHHHHHHHHHHHh----cCchHHHHHHHHHHHhCCCcch-------HHHHHHHHHHHHH
Q psy6461 569 RHAMAVYERATGAVL-PEEMFEMFNIYIKKAAEI----YGIPKTRQIYERAIESLPEEPT-------RQMCLKFAEMETK 636 (703)
Q Consensus 569 ~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~-------~~~~~~~a~~~~~ 636 (703)
++.++.|+..+.... .+++...|..|+....+. +....-..++++|+..+.+++. ..+|+.||++
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~--- 78 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL--- 78 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH---
Confidence 456788888888877 677799999999998773 4556778899999998765432 4588888775
Q ss_pred cCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 637 LGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRI 685 (703)
Q Consensus 637 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 685 (703)
.+.++.+|+...+..=....+.+|..|+.+....|+..+|.++++.
T Consensus 79 ---~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 79 ---SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp ---BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ---ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3388999988876533344699999999999999999999999854
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.47 E-value=0.0028 Score=53.95 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS-----YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
...+..-+.... .|++++|++.|+.....+|.+ ..+|+.++-+. .++++.|...+++-++.+|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----------~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----------QGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHHhCCC
Confidence 355555565555 899999999999999999966 47888887763 38899999999999999998
Q ss_pred CHH---HHHHHHHHHHhccC---------------hHHHHHHHHHHHHhCCcc
Q psy6461 105 MPR---IWLDYGRFLMDQHK---------------ITQTRHVFDRALRALPIT 139 (703)
Q Consensus 105 ~~~---~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~p~~ 139 (703)
++. ++...|...+.+.. ...|..-|++.++..|.+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 873 34444444444433 678889999999999954
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.0025 Score=60.26 Aligned_cols=91 Identities=12% Similarity=0.184 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc-ccccHHHHHHHHHhcCChHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP---RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ-HHRVWPLYLSFVKSHAVPETA 161 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A 161 (703)
|++..|...|..-++..|++. .+.+=+|+.+..+|+++.|..+|.++.+..|.+. .++....++.+..+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 445555555555555555422 3333345555555666666666666655555331 234455555555555555666
Q ss_pred HHHHHHHHhhCCCCH
Q psy6461 162 VRVFRRYLKLFPEDA 176 (703)
Q Consensus 162 ~~~~~~~l~~~p~~~ 176 (703)
..+|+..++..|++.
T Consensus 235 ~atl~qv~k~YP~t~ 249 (262)
T COG1729 235 CATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHCCCCH
Confidence 666666666666554
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.0014 Score=61.98 Aligned_cols=87 Identities=16% Similarity=0.283 Sum_probs=70.9
Q ss_pred HHHhccChHHHHHHHHHHHHhCCccc-ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH---HHHHHH---HHhcC
Q psy6461 115 FLMDQHKITQTRHVFDRALRALPITQ-HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA---EDYIEY---LSSIE 187 (703)
Q Consensus 115 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~---~~~~~ 187 (703)
-+...|++..|...|...++..|.+. .+.....+++.+..+|+++.|...|.++.+..|.+. +.++.+ ..+.|
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 34566889999999999999999642 255566677777799999999999999999988765 456554 35789
Q ss_pred CHHHHHHHHHHhhc
Q psy6461 188 RLDEAAVKLAYIVN 201 (703)
Q Consensus 188 ~~~~A~~~~~~~~~ 201 (703)
+.++|+..|.++++
T Consensus 230 ~~d~A~atl~qv~k 243 (262)
T COG1729 230 NTDEACATLQQVIK 243 (262)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999985
No 213
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.37 E-value=0.00024 Score=44.33 Aligned_cols=33 Identities=3% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHH
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTR 126 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~ 126 (703)
.|++||+.+|+++.+|..+|.++...|+.++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999886
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.36 E-value=0.0007 Score=68.79 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=63.6
Q ss_pred hcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccccc---ccHHHHHHHHHhcCChHHHHHHHHHHHhh
Q psy6461 101 FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHH---RVWPLYLSFVKSHAVPETAVRVFRRYLKL 171 (703)
Q Consensus 101 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 171 (703)
.+|+++..|++++..+...|++++|...|+++|+.+|. +. .+|...+.++...|+.++|+..|+++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd--~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN--PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999995 34 35889999999999999999999999997
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.35 E-value=0.00092 Score=67.97 Aligned_cols=70 Identities=11% Similarity=-0.016 Sum_probs=64.5
Q ss_pred hhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhccChHHHHHHHHHHHH
Q psy6461 58 KELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI---WLDYGRFLMDQHKITQTRHVFDRALR 134 (703)
Q Consensus 58 ~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~ 134 (703)
..+|++...|.+++..+... |++++|...|++|++.+|++... |++.+.++..+|++++|...+++|++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~l--------GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSK--------GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47899999999999887654 89999999999999999999854 99999999999999999999999999
Q ss_pred h
Q psy6461 135 A 135 (703)
Q Consensus 135 ~ 135 (703)
.
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 6
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.32 E-value=0.00065 Score=52.54 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhcc---CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLV---PYTKVEDLATVWCEWAELELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 459 (703)
...++..+|.++...|++++|+..|++++.+ .+.........+..+|.++...|++++|+..+++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999876 22222234678999999999999999999999998864
No 217
>KOG2796|consensus
Probab=97.31 E-value=0.087 Score=49.24 Aligned_cols=168 Identities=11% Similarity=0.071 Sum_probs=109.4
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc----hHHHHHHHHHHHHHHhcC
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE----EMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~ 603 (703)
+.+++.-...++.+.++.+|... +.+...++.+.+..|+.+.|...|++.-+....- ....+...........++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~-p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn 267 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQE-PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN 267 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence 34555778889999999885432 5788999999999999999999999665432211 111222233333344678
Q ss_pred chHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC--ChHhHHHHHHHHHHcCCHHHHHH
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV--TAGFWAAWKSFEITHGNEDTMRE 681 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~ 681 (703)
+..|...|.+++..+|.++. ....-|-++.-.|+...|++..+.+++..|... ...+++.-..+|...-+..+.+.
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~--a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~~~~k~ 345 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAV--ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRSMQKKQ 345 (366)
T ss_pred hHHHHHHHhhccccCCCchh--hhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhhhhHHH
Confidence 88898899999999998765 556666677779999999999999999865321 22333333333333333333332
Q ss_pred HHH--HHHHHHHHhhhccc
Q psy6461 682 MLR--IKRSVQAQYNTQVL 698 (703)
Q Consensus 682 ~~~--~~~~~~~~~~~~~~ 698 (703)
.+. ++++..-+++|+.|
T Consensus 346 ~l~~~ia~~~~d~f~~~c~ 364 (366)
T KOG2796|consen 346 ALLEAVAGKEGDSFNTQCL 364 (366)
T ss_pred HHHHHHhccCCCcccchhh
Confidence 222 35656666666654
No 218
>KOG1941|consensus
Probab=97.24 E-value=0.12 Score=50.62 Aligned_cols=219 Identities=16% Similarity=0.088 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL--ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
++.+.++..+...+.++++...|+++++..-.+-+.. -.++..++.++.+..++++|.-...+|..+...- .-..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~---~l~d 199 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY---GLKD 199 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc---CcCc
Confidence 4566678888888999999999999988732221111 3678999999999999999998888877643210 0000
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhC---C
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC---P 547 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~---p 547 (703)
-..+.| .-..+.++-.+.. .|++-.|.+..+.+.++. .
T Consensus 200 ~~~kyr----~~~lyhmaValR~-----------------------------------~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 200 WSLKYR----AMSLYHMAVALRL-----------------------------------LGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred hhHHHH----HHHHHHHHHHHHH-----------------------------------hcccccHHHHHHHHHHHHHHhC
Confidence 000000 0111111111122 234466777777766652 1
Q ss_pred Cc-chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc--c--hHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHh
Q psy6461 548 PR-YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP--E--EMFEMFNIYIKKAAEIYGI-----PKTRQIYERAIES 617 (703)
Q Consensus 548 ~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~~~~~~~~~~~~~~-----~~A~~~~~~al~~ 617 (703)
+. .-.....-+++++...|+.+.|..-|+.|+..-.. | ..++...+........+-. =+|.+.-.++++.
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~lev 320 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEV 320 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 11 11346678999999999999999999999876432 1 1223333333322222222 2477777777776
Q ss_pred CCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 618 LPEEP----TRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 618 ~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
...-. ...+...++.+|...|.-++-+..+.+|-+.
T Consensus 321 A~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 321 ASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 43221 2346678899999999888777777776554
No 219
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.21 E-value=0.005 Score=54.28 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
++.|++.++.....+|.+ .+.++.++..+..+.+++-...+..
T Consensus 7 FE~ark~aea~y~~nP~D-----------------adnL~~WG~ALLELAqfk~g~es~~-------------------- 49 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD-----------------ADNLTNWGGALLELAQFKQGPESKK-------------------- 49 (186)
T ss_dssp HHHHHHHHHHHHHH-TT------------------HHHHHHHHHHHHHHHHHS-HHHHHH--------------------
T ss_pred HHHHHHHHHHHHHhCcHh-----------------HHHHHHHHHHHHHHHhccCcchHHH--------------------
Confidence 688999999999999985 7888888877766544311011100
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHhhccCcc
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHG-----------LARHAMAVYERATGAVLPE 585 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g-----------~~~~A~~~~~~al~~~p~~ 585 (703)
-+++|.+-|+.|+.++|+. ...+..+|..+...+ .+++|...|++|....|.+
T Consensus 50 -----miedAisK~eeAL~I~P~~--hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 50 -----MIEDAISKFEEALKINPNK--HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp -----HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred -----HHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1378999999999999998 446666666665543 2456666666666666665
No 220
>KOG1585|consensus
Probab=97.19 E-value=0.19 Score=46.58 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH----HHHHHHHHHHHHhcC
Q psy6461 532 LERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF----EMFNIYIKKAAEIYG 603 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~~~~~~ 603 (703)
+.++..+|++|+...-.+. .....-.-+.+ ....++++|+.+|.+++..+..+.+. .++......+.+...
T Consensus 87 lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 87 LSEVVDLYEKASELYVECGSPDTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 3566666666665422111 11222222222 34557777777777777666554322 223333333334445
Q ss_pred chHHHHHHHHHHHh------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC---CCCChHhHHHHHHHHHHcC
Q psy6461 604 IPKTRQIYERAIES------LPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICD---PRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 604 ~~~A~~~~~~al~~------~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~g 674 (703)
+++|-..+.+-... .|+ .-..++..+-++.-..++..|..+|+.+.++.. ++ .....+++..++ ..|
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~--~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se-d~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNS--QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE-DSRSLENLLTAY-DEG 241 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhccc--HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH-HHHHHHHHHHHh-ccC
Confidence 55555444433221 122 112455555555666789999999999888721 22 344555554433 458
Q ss_pred CHHHHHHHHH
Q psy6461 675 NEDTMREMLR 684 (703)
Q Consensus 675 ~~~~~~~~~~ 684 (703)
+.+.+.+|+.
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 8888888863
No 221
>KOG4234|consensus
Probab=97.17 E-value=0.0072 Score=53.77 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=49.7
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYTKVEDL-ATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
|.-+..+|++++|..-|..||..+|...... .-+|..-+...++.++++.|+.-..+|+++.|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 4556678899999999999998888765333 345666677778888899999999999888886
No 222
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.16 E-value=0.00081 Score=41.67 Aligned_cols=31 Identities=32% Similarity=0.672 Sum_probs=28.7
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLR 74 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~ 74 (703)
|+++.|+.+|++++..+|.++.+|..|++++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5688999999999999999999999999875
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.13 E-value=0.075 Score=53.74 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC-cchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcCCCCCccc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK-VEDLATVWCEWAELELR---AGQEEAALRLMARATATPARPVAY 466 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~ 466 (703)
.+++.+.+--.|...++++.-+++.+..-.. |.. ......+-..||..+.+ .|+.++|+.++..++......
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~--- 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP--- 215 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC---
Confidence 3456667767788899999999999877655 221 11223788899999998 899999999999976555443
Q ss_pred ccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHH--hCCCChhHHHHHHHHHHH
Q psy6461 467 HDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSR--YGGTKLERARDLFEQCLE 544 (703)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~A~~~~~~al~ 544 (703)
+++.+-..+.++... +... ......++|...|.++.+
T Consensus 216 -------------~~d~~gL~GRIyKD~----------------------------~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 216 -------------DPDTLGLLGRIYKDL----------------------------FLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred -------------ChHHHHHHHHHHHHH----------------------------HHHcCccchHHHHHHHHHHHHHHc
Confidence 477777777776542 0110 012235899999999999
Q ss_pred hCCCcchHHHHHHHHHHHHHcCChHHH----HHHH---HHHh-hc--cCcchHHHHHHHHHHHHHHhcCchHHHHHHHHH
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHGLARHA----MAVY---ERAT-GA--VLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERA 614 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g~~~~A----~~~~---~~al-~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 614 (703)
..|+..+ =++++-++...|...+. +++- ...+ +. ..+....+....++....-.+++++|.+.++++
T Consensus 255 ~~~~~Y~---GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 255 IEPDYYS---GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred CCccccc---hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987642 34555555555542222 2222 0001 11 111122344445555555566777777777777
Q ss_pred HHhCC
Q psy6461 615 IESLP 619 (703)
Q Consensus 615 l~~~p 619 (703)
++..|
T Consensus 332 ~~l~~ 336 (374)
T PF13281_consen 332 FKLKP 336 (374)
T ss_pred hhcCC
Confidence 76654
No 224
>KOG4642|consensus
Probab=97.12 E-value=0.0079 Score=55.15 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=83.1
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
..++..|+..|-|++.++|..+.+|.+-+..+++. ++++.+.....+|+.+.|+.......++.+.+....+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~--------~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL--------KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh--------hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 35678888999999999999999999888887764 6788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---CCcccccccHHHHHHH
Q psy6461 123 TQTRHVFDRALRA---LPITQHHRVWPLYLSF 151 (703)
Q Consensus 123 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~ 151 (703)
+.|..++++|... .|.+....+|..+...
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 9999999998443 3333456777776655
No 225
>KOG1586|consensus
Probab=97.08 E-value=0.24 Score=45.64 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVED---LATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
....+..+.+-...+++.+|+.+|++.....-.|.-. ...-++.-+...+-..+.-.+...+++-...+|..
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 3456777777778889999999999877664444300 01222333333444577778888888888899974
No 226
>KOG4234|consensus
Probab=97.07 E-value=0.0032 Score=55.88 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=72.0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 84 TDPSYEDVNNTFERSLVFMHKMP-----RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
..|++++|..-|..||...|..+ -++.+.+.+.++++..+.|..-..+++++.|+ ...+...-+..|.+...+
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt--y~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT--YEKALERRAEAYEKMEKY 184 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch--hHHHHHHHHHHHHhhhhH
Confidence 35889999999999999888644 35556677778888888999999999998884 455555556677777888
Q ss_pred HHHHHHHHHHHhhCCCCHH
Q psy6461 159 ETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 159 ~~A~~~~~~~l~~~p~~~~ 177 (703)
+.|+.-|+++++.+|...+
T Consensus 185 eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHHHHHHHHhCcchHH
Confidence 8999999999998888753
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.085 Score=50.59 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=113.5
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.++..+|...|..++...|.+ ..+-+.++.++...|+.+.|..++...-.....+.... ....+.+..+....++..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAAATPEIQ 223 (304)
T ss_pred ccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHhcCCCHH
Confidence 466799999999999999998 57999999999999999999999886544444432222 334566666655555544
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHH
Q psy6461 609 QIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMR 680 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 680 (703)
. +++.+..+|++.. .-+.+|..+...|+.+.|...+-..+.......+...-..+.++....|+.+-+-
T Consensus 224 ~-l~~~~aadPdd~~--aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 224 D-LQRRLAADPDDVE--AALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred H-HHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 3 4566778998766 8899999999999999999999888887555556888888999999999766643
No 228
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.98 E-value=0.0009 Score=41.73 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHH
Q psy6461 538 LFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMA 573 (703)
Q Consensus 538 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 573 (703)
+|+++|+.+|++ +.+|..+|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n--~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN--AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC--HHHHHHHHHHHHHCcCHHhhcC
Confidence 478999999999 6799999999999999998863
No 229
>KOG4555|consensus
Probab=96.97 E-value=0.0084 Score=49.32 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=76.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch--HHHHHHHHHHHHH
Q psy6461 559 AKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT--RQMCLKFAEMETK 636 (703)
Q Consensus 559 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~ 636 (703)
+-.....|+.+.|+..|.+++...|..+ ..|+.-.+.+.-.|+.++|.+-+.++++...+... -+.++..+.++..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3445578899999999999999999874 46677777777788999999999999998665432 2477888889999
Q ss_pred cCCHHHHHHHHHHHhcccCC
Q psy6461 637 LGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 637 ~g~~~~A~~~~~~a~~~~~~ 656 (703)
.|+.+.||.-|++|-++-++
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 99999999999999888443
No 230
>KOG4642|consensus
Probab=96.90 E-value=0.0047 Score=56.55 Aligned_cols=93 Identities=13% Similarity=0.196 Sum_probs=80.8
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcC
Q psy6461 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA 156 (703)
Q Consensus 77 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 156 (703)
+-++.|.....+..|..-|.+|+..+|..+..|.+-+.++++..+.+.+..-..+|++.+| +.......++.+.....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~--N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP--NLVKAHYFLGQWLLQSK 92 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--HHHHHHHHHHHHHHhhc
Confidence 4456677777899999999999999999999999999999999999999999999999999 55677777777777777
Q ss_pred ChHHHHHHHHHHHhh
Q psy6461 157 VPETAVRVFRRYLKL 171 (703)
Q Consensus 157 ~~~~A~~~~~~~l~~ 171 (703)
.++.|+..+.++...
T Consensus 93 ~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSL 107 (284)
T ss_pred cccHHHHHHHHHHHH
Confidence 889999999998543
No 231
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.89 E-value=0.028 Score=47.15 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 605 PKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAH 649 (703)
Q Consensus 605 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (703)
++.+++|..+....-....+.++..||.++.+.|++.+|..+|++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 335666666665544444445666777777777777777776653
No 232
>KOG1130|consensus
Probab=96.88 E-value=0.025 Score=56.05 Aligned_cols=118 Identities=13% Similarity=0.069 Sum_probs=64.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc--CCCCcchHHHHHHHHHHHHHHc
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV--PYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
|+....+.+|+.|++.-..+ .....-+|..++..|.-.+++++|.++-.--+.+ .-.+...-+..--.++..+--.
T Consensus 31 gdcraGv~ff~aA~qvGTeD--l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTED--LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred cchhhhHHHHHHHHHhcchH--HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 78888999999998862221 1234567777777888888888887764322111 0011000012223445555556
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCC
Q psy6461 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGT 496 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (703)
|.+++|+....+-+..... +..|+. ..+.++..+.++...|.
T Consensus 109 G~fdeA~~cc~rhLd~are----------LgDrv~-e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARE----------LGDRVL-ESRALYNLGNVYHAKGK 150 (639)
T ss_pred cccchHHHHHHHHhHHHHH----------HhHHHh-hhHHHhhhhhhhhhccc
Confidence 7788877766654432211 111111 13556666777766554
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.82 E-value=0.0052 Score=47.37 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc-hHHHHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP-TRQMCLKFA 631 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~a 631 (703)
.++..+|.++...|++++|+..|+++++.... ..++++ ....+..++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------------------------------~~~~~~~~a~~~~~lg 53 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQ--------------------------------LGDDHPDTANTLNNLG 53 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--------------------------------TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------------HCCCCHHHHHHHHHHH
Confidence 45666666666677777777766666654110 011111 133667778
Q ss_pred HHHHHcCCHHHHHHHHHHHhcc
Q psy6461 632 EMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.++...|++++|...+++|+++
T Consensus 54 ~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 54 ECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888888888888888775
No 234
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.81 E-value=0.023 Score=47.60 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=72.6
Q ss_pred HHHHHHHHh-hccCcchHHHHHHHHHHHHHHh---c-CchHHHHHHHHHHHhCCCc------c-hHHHHHHHHHHHHHcC
Q psy6461 571 AMAVYERAT-GAVLPEEMFEMFNIYIKKAAEI---Y-GIPKTRQIYERAIESLPEE------P-TRQMCLKFAEMETKLG 638 (703)
Q Consensus 571 A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~---~-~~~~A~~~~~~al~~~p~~------~-~~~~~~~~a~~~~~~g 638 (703)
-++.|+..+ .....+++...|.-|+....+. | .-..-..++++|++.+-++ + ...+|+.|+++ ++
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~---~~ 80 (125)
T smart00777 4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN---CD 80 (125)
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh---cC
Confidence 355566665 4455555677777777776541 2 2234467777777764322 2 24599999886 34
Q ss_pred CHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 639 EIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 639 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
.++.+|+...+..=....+.+|+.|+.+....|...+|.+|++
T Consensus 81 ---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 ---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred ---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567777665542233369999999999999999999999984
No 235
>KOG1586|consensus
Probab=96.75 E-value=0.43 Score=44.06 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=10.2
Q ss_pred hcCchHHHHHHHHHHHhCCCc
Q psy6461 601 IYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~ 621 (703)
++++.+|..+|++.....-++
T Consensus 167 leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 445555555555554444333
No 236
>KOG4555|consensus
Probab=96.74 E-value=0.026 Score=46.51 Aligned_cols=90 Identities=19% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch--HHHHHHHHHHHHHHhcCch
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE--MFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~ 605 (703)
..++++.|.+.|.+++...|.. +.+|.+-++.+.-.|+.++|..-+.+|++...+.. ..+.|.--..++...|+.+
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred hccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 4688999999999999999998 56999999999999999999999999998765432 2344444455566688999
Q ss_pred HHHHHHHHHHHhCC
Q psy6461 606 KTRQIYERAIESLP 619 (703)
Q Consensus 606 ~A~~~~~~al~~~p 619 (703)
.||.-|+.+-+...
T Consensus 133 ~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 133 AARADFEAAAQLGS 146 (175)
T ss_pred HHHHhHHHHHHhCC
Confidence 99999998887653
No 237
>KOG0985|consensus
Probab=96.72 E-value=1.5 Score=49.27 Aligned_cols=273 Identities=10% Similarity=0.120 Sum_probs=143.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD-QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
++-+++|..+|++- ..+.+ ..+++.. -+++|.|-..-+++ +.+.+|..++......|...+|+.
T Consensus 1061 ~~LyEEAF~ifkkf----~~n~~----A~~VLie~i~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKF----DMNVS----AIQVLIENIGSLDRAYEFAERC-------NEPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhHHHHHHHHHHHh----cccHH----HHHHHHHHhhhHHHHHHHHHhh-------CChHHHHHHHHHHHhcCchHHHHH
Confidence 35677888877752 22222 2333333 36777777776664 336789999988888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhH
Q psy6461 164 VFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGG 243 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (703)
-|-++ -+|.+....++...+.|.+++-++.+.-+.+.-. .+....++-..|++.-+ +.+.
T Consensus 1126 Syika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~----E~~id~eLi~AyAkt~r--------------l~el 1185 (1666)
T KOG0985|consen 1126 SYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR----EPYIDSELIFAYAKTNR--------------LTEL 1185 (1666)
T ss_pred HHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc----CccchHHHHHHHHHhch--------------HHHH
Confidence 87765 3566665667788889999998888865542110 00111111111111100 0000
Q ss_pred hhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHH
Q psy6461 244 LRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIE 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 323 (703)
-.-..+++..-....|+-+...|.++.|+-+|... .+|+.+-.....+.
T Consensus 1186 E~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------SN~a~La~TLV~Lg------------------------ 1234 (1666)
T KOG0985|consen 1186 EEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------SNFAKLASTLVYLG------------------------ 1234 (1666)
T ss_pred HHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------hhHHHHHHHHHHHH------------------------
Confidence 00011122333455677777788888887777652 23333322222221
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH
Q psy6461 324 LELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE 403 (703)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 403 (703)
.|..+.+ ...-..+...|-......- + .+.|+-| +.+.-... --.+-.-.+..+|.
T Consensus 1235 ------eyQ~AVD----------~aRKAns~ktWK~VcfaCv---d--~~EFrlA-QiCGL~ii--vhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1235 ------EYQGAVD----------AARKANSTKTWKEVCFACV---D--KEEFRLA-QICGLNII--VHADELEELIEYYQ 1290 (1666)
T ss_pred ------HHHHHHH----------HhhhccchhHHHHHHHHHh---c--hhhhhHH-HhcCceEE--EehHhHHHHHHHHH
Confidence 1111111 0111223344433322110 0 0011110 00110000 01233456678889
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRL 452 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 452 (703)
..|-+++-+.+++.++-+..-+. .++..++-+|.+. ++++-++.
T Consensus 1291 ~rGyFeElIsl~Ea~LGLERAHM----gmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLERAHM----GMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred hcCcHHHHHHHHHhhhchhHHHH----HHHHHHHHHHHhc-CHHHHHHH
Confidence 99999999999999998876665 7788888777654 34444443
No 238
>KOG1941|consensus
Probab=96.70 E-value=0.39 Score=47.24 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHHHhCCCcch----HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc----c--hH--HHHHHHHHHHH
Q psy6461 531 KLERARDLFEQCLEACPPRYA----KTLYLLYAKLEEEHGLARHAMAVYERATGAVLP----E--EM--FEMFNIYIKKA 598 (703)
Q Consensus 531 ~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~--~~--~~~~~~~~~~~ 598 (703)
.++++.+.|+.|++....+.+ ..++..++.++....++++|.-...+|...... + .. ......+.-.+
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 358889999999987433321 248899999999999999999888888765421 1 11 11112223334
Q ss_pred HHhcCchHHHHHHHHHHHhC---CCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 599 AEIYGIPKTRQIYERAIESL---PEEP-TRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~---p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..+|...+|.+..+.+.+.. .|.+ +..-..-++++++..|+.+.|..-|+.|+..
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 45788888998888887763 2322 1224567899999999999999999999876
No 239
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.69 E-value=0.0031 Score=37.74 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6461 45 PKAIINTIYERSLKELPGSYKLWYNYLKLR 74 (703)
Q Consensus 45 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~ 74 (703)
.+++|+.+|||.+...|+ +..|+.|++++
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhh
Confidence 578999999999999875 99999999885
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.55 E-value=0.0043 Score=38.68 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
+|..+|.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666554
No 241
>KOG4648|consensus
Probab=96.53 E-value=0.013 Score=56.64 Aligned_cols=60 Identities=18% Similarity=0.001 Sum_probs=49.5
Q ss_pred HHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q psy6461 398 FGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPA 461 (703)
Q Consensus 398 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 461 (703)
-|.-|.++|.+++|+..|.+++...|.|+ ..+..-+..|++.+++..|..-...|+..+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~Np----V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNP----VYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCc----cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 36677788999999999999999988887 7788888888888888888888777777653
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.51 E-value=0.99 Score=44.68 Aligned_cols=247 Identities=15% Similarity=0.110 Sum_probs=135.6
Q ss_pred HHHcCChHHHHHHHHHhhcc----CCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 402 YEVNDQLEDARLIFDKATLV----PYTKVEDLATVWCEWAELELRAG-QEEAALRLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 402 ~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
.++.|+++.|..+|.|+-.. +|+....+..+.+..|.-....+ +++.|..++++|..................
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~-- 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS-- 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH--
Confidence 35688999999999887443 45555556777888888888888 999999999999877422000000000000
Q ss_pred HHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 477 VYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYL 556 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 556 (703)
..-..+...++..+...+.. ...++|..+++.+-...|+. +.++.
T Consensus 81 -elr~~iL~~La~~~l~~~~~--------------------------------~~~~ka~~~l~~l~~e~~~~--~~~~~ 125 (278)
T PF08631_consen 81 -ELRLSILRLLANAYLEWDTY--------------------------------ESVEKALNALRLLESEYGNK--PEVFL 125 (278)
T ss_pred -HHHHHHHHHHHHHHHcCCCh--------------------------------HHHHHHHHHHHHHHHhCCCC--cHHHH
Confidence 00123333344444333322 12367888888887788887 45666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccC-cchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh--CCCcc-hH-HHHHHHH
Q psy6461 557 LYAKLEEEHGLARHAMAVYERATGAVL-PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEP-TR-QMCLKFA 631 (703)
Q Consensus 557 ~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~-~~-~~~~~~a 631 (703)
....+..+.++.+.+..++.+++...+ .+..+.....-+..... .....+...+...|.. .|... .. ...+...
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~ 204 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRV 204 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666668889999999999998876 33333333333322222 2344555555555543 22211 11 1222332
Q ss_pred HHHHHcCC------HHHHHHHHHHHhcccCC--CC------ChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6461 632 EMETKLGE------IDRARAIYAHCSQICDP--RV------TAGFWAAWKSFEITHGNEDTMREMLRIKR 687 (703)
Q Consensus 632 ~~~~~~g~------~~~A~~~~~~a~~~~~~--~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 687 (703)
.+..+.++ .+....++.+..+.... +. ...+|+. +.-....+++++|.++++.+-
T Consensus 205 ~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 205 LLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 22222222 33344444433222111 10 2334443 445566789999999987654
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.46 E-value=0.41 Score=49.40 Aligned_cols=189 Identities=13% Similarity=0.036 Sum_probs=111.2
Q ss_pred HHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHh
Q psy6461 400 KFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYK 479 (703)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 479 (703)
.-.++..+.++-++.-.+||+++|.+. ..|+.++. -......+|..+|++|++........
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCA----dAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~------------- 236 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCA----DAYILLAE--EEASTIVEAEELLRQAVKAGEASLGK------------- 236 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhh----HHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhch-------------
Confidence 344567778888888899999999887 77777764 33556899999999998765432110
Q ss_pred hHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 480 SIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYA 559 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 559 (703)
.......|.. ++- +..-...+...+-.++...+. ..|+.++|.+.+...++..|....-.++..+.
T Consensus 237 --------s~~~~~~g~~--~e~-~~~Rdt~~~~y~KrRLAmCar---klGr~~EAIk~~rdLlke~p~~~~l~IrenLi 302 (539)
T PF04184_consen 237 --------SQFLQHHGHF--WEA-WHRRDTNVLVYAKRRLAMCAR---KLGRLREAIKMFRDLLKEFPNLDNLNIRENLI 302 (539)
T ss_pred --------hhhhhcccch--hhh-hhccccchhhhhHHHHHHHHH---HhCChHHHHHHHHHHHhhCCccchhhHHHHHH
Confidence 0000111110 000 000000111112222221122 35788999999999999888642245888899
Q ss_pred HHHHHcCChHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHhc-----------Cc----hHHHHHHHHHHHhCCCcc
Q psy6461 560 KLEEEHGLARHAMAVYERATGA-VLPEEMFEMFNIYIKKAAEIY-----------GI----PKTRQIYERAIESLPEEP 622 (703)
Q Consensus 560 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~-----------~~----~~A~~~~~~al~~~p~~~ 622 (703)
..+...+.+.++.+++.+-=+. .|+++ ...|..-+......+ +. ..|.+...||++.+|.-|
T Consensus 303 e~LLelq~Yad~q~lL~kYdDi~lpkSA-ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 303 EALLELQAYADVQALLAKYDDISLPKSA-TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHhcCCHHHHHHHHHHhccccCCchH-HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999885433 24432 222332221111111 11 245688999999998644
No 244
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.45 E-value=0.0062 Score=37.52 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy6461 87 SYEDVNNTFERSLVFMHKMPRIWLDYGRFLM 117 (703)
Q Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 117 (703)
+.+.|+.+|+++++..|.++.+|+.|+.++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 4567788888888888888888888877753
No 245
>KOG4648|consensus
Probab=96.44 E-value=0.0072 Score=58.22 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=81.2
Q ss_pred HhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhc
Q psy6461 76 KQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH 155 (703)
Q Consensus 76 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 155 (703)
.+-++.+...|.|++|+..|.+++...|.|+-.+.+.+..|+++.++..|..-+..|+.++- ....+|..-+..-...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARESL 178 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHHH
Confidence 34456667789999999999999999999999999999999999999999999999998765 2233333333333356
Q ss_pred CChHHHHHHHHHHHhhCCCCHHH
Q psy6461 156 AVPETAVRVFRRYLKLFPEDAED 178 (703)
Q Consensus 156 ~~~~~A~~~~~~~l~~~p~~~~~ 178 (703)
|..++|.+-++.+|++.|++.+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHH
Confidence 77899999999999999998653
No 246
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.43 E-value=0.067 Score=47.14 Aligned_cols=100 Identities=15% Similarity=0.270 Sum_probs=65.5
Q ss_pred cCchhHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGSY------KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~------~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
.++...+...+++++....... .-|.. ..+..++... ..+...++..+
T Consensus 19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~--------------------~~r~~l~~~~------~~~~~~l~~~~ 72 (146)
T PF03704_consen 19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVE--------------------PERERLRELY------LDALERLAEAL 72 (146)
T ss_dssp TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHH--------------------HHHHHHHHHH------HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHH--------------------HHHHHHHHHH------HHHHHHHHHHH
Confidence 6788899999999998765332 13332 2233333321 24455667777
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
...|++++|..++++++..+| .+..+|..+...+...|+...|++.|++...
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 778888888888888888888 4577888888888888888888888877643
No 247
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.34 E-value=0.0095 Score=37.08 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 106 PRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
+.+|..+|.++...|++++|+..|+++++..|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 356778888888888888888888888888873
No 248
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.28 E-value=0.0063 Score=36.46 Aligned_cols=30 Identities=33% Similarity=0.646 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q psy6461 531 KLERARDLFEQCLEACPPRYAKTLYLLYAKLEE 563 (703)
Q Consensus 531 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 563 (703)
.+|+||.+|++.+...|+ +..|+.||.++.
T Consensus 2 E~dRAR~IyeR~v~~hp~---~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE---VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC---chHHHHHHHhhc
Confidence 358999999999999887 468999998874
No 249
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.24 E-value=0.0062 Score=38.00 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
+|..+|.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 5666666666666666666666666666654
No 250
>KOG2796|consensus
Probab=96.18 E-value=1.2 Score=42.08 Aligned_cols=139 Identities=9% Similarity=0.003 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccC-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVP-YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
-..++.++...|++.-...++.+.++.+ |..+ .+...++++.++.|+.+.|...|++.-+....-. -.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p----~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~-~~------ 248 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP----QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD-GL------ 248 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH----HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh-cc------
Confidence 3445666667788888888888888875 4444 7777888888888888888888876543221100 00
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
.......... ..-..+.+++-.|...|.+++..+|.+ +.
T Consensus 249 ------q~~~~V~~n~---------------------------------a~i~lg~nn~a~a~r~~~~i~~~D~~~--~~ 287 (366)
T KOG2796|consen 249 ------QGKIMVLMNS---------------------------------AFLHLGQNNFAEAHRFFTEILRMDPRN--AV 287 (366)
T ss_pred ------chhHHHHhhh---------------------------------hhheecccchHHHHHHHhhccccCCCc--hh
Confidence 0000000000 000113456788888888888888887 45
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
.....|-+.+-.|+..+|++..+.++...|..
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 66777777778888888888888888888875
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.14 E-value=0.052 Score=55.69 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=88.3
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChH
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKIT 123 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 123 (703)
.+..+..+.-.+||+++|++.+.|+.+++-. .....+|..+|+++++....+.. ........|..-
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEe----------A~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~~g~~~ 247 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEEE----------ASTIVEAEELLRQAVKAGEASLG----KSQFLQHHGHFW 247 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccccc----------ccCHHHHHHHHHHHHHHHHHhhc----hhhhhhcccchh
Confidence 5567777888999999999999999887531 23478899999999987543211 111111122111
Q ss_pred HHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH-----HHHHHHHhcCCHHHHHHHHHH
Q psy6461 124 QTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE-----DYIEYLSSIERLDEAAVKLAY 198 (703)
Q Consensus 124 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~~~A~~~~~~ 198 (703)
+ ....| +.+....+-..++.+..+.|+.++|++.++..++.+|.... .++..+...+++.++.+++.+
T Consensus 248 e--~~~~R-----dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 248 E--AWHRR-----DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred h--hhhcc-----ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 11111 11112233345677777889999999999999988876322 346777889999999888876
Q ss_pred h
Q psy6461 199 I 199 (703)
Q Consensus 199 ~ 199 (703)
-
T Consensus 321 Y 321 (539)
T PF04184_consen 321 Y 321 (539)
T ss_pred h
Confidence 4
No 252
>KOG2610|consensus
Probab=96.10 E-value=0.31 Score=47.37 Aligned_cols=152 Identities=10% Similarity=-0.030 Sum_probs=97.8
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-cCcchHHHHHHHHHHHH-HHhcCch
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA-VLPEEMFEMFNIYIKKA-AEIYGIP 605 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~-~~~~~~~ 605 (703)
+.|+..+|-...++.++..|.+. ..|-.--..+...|+-..-+..+++.+-. +|+-+......+...|. ...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDl--la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDL--LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhh--hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45677888888999999999883 34544445555678888888888888876 44432222223333333 4578889
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHH--HHHHHHHHcCCHHHHHHHH
Q psy6461 606 KTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWA--AWKSFEITHGNEDTMREML 683 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~ 683 (703)
+|.+.-.++++++|.+.= .....++++.-.|+++++..+..+--..=.........+ +++-|.-..+.++.+.+++
T Consensus 193 dAEk~A~ralqiN~~D~W--a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCW--ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCCCcchH--HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999999999887643 445677788888888888888765422211111222222 3445555557777777776
No 253
>KOG1585|consensus
Probab=96.09 E-value=0.28 Score=45.58 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=52.3
Q ss_pred CchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc--CCCCcchHHHHHHHHHHHHHHcC
Q psy6461 367 KPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV--PYTKVEDLATVWCEWAELELRAG 444 (703)
Q Consensus 367 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~ 444 (703)
++++|+.+|.+++..+........-..++-..+..+.+...+.+|-..+.+-... ...+.......+...+-+++...
T Consensus 125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~ 204 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAH 204 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHH
Confidence 4455566666555543332222222344555566666677777766666543222 11111122356777777777778
Q ss_pred CHHHHHHHHHHHhcCC
Q psy6461 445 QEEAALRLMARATATP 460 (703)
Q Consensus 445 ~~~~A~~~~~~a~~~~ 460 (703)
++..|...++..-+++
T Consensus 205 Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 205 DYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHHHhcchhcCc
Confidence 8889988888766554
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.07 E-value=0.014 Score=36.41 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
.+|...|.++...|++++|...|+++|+.+|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56778888888888888888888888888773
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.02 E-value=0.16 Score=44.76 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 593 IYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..+......|+++.|..+.++++..+|-+.. +|..+...+...|+...|...|+++.+.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~--~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEE--AYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH--HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3444445567788888888888888887655 7777788888888888888888877554
No 256
>KOG2610|consensus
Probab=95.93 E-value=0.24 Score=48.10 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=110.9
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHh-CCcc-cccccHHHHHHHHHhcCChHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA-LPIT-QHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~-~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
.|++.+|...+++.++..|.+.-.|.---..++-.|+.+.-+..+++.+-. +|+- -...+.-.|+-.+.+.|-+++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 378888999999999999999888877777777889999999999988765 4421 11233344555566789999999
Q ss_pred HHHHHHHhhCCCCHHH---HHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHH
Q psy6461 163 RVFRRYLKLFPEDAED---YIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAI 239 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 239 (703)
+.-+++++++|.+.-+ ....+...|+.+++.+...+-- ..|.+ ...+
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te--------------d~Wr~-s~ml--------------- 245 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE--------------DDWRQ-SWML--------------- 245 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc--------------cchhh-hhHH---------------
Confidence 9999999999988542 2345667889988877654321 11221 0000
Q ss_pred HHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 240 IRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
....|-..+.++++.+.++.|..+|++-+-
T Consensus 246 -----------asHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 246 -----------ASHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred -----------HhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 023455678888889999999999998554
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.82 Score=44.09 Aligned_cols=131 Identities=16% Similarity=0.025 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHH
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQA 475 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 475 (703)
+.-+.-....|++..|...|..++...|.+. .+-..|++.+...|+.+.|..++...-......
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~------------ 201 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENS----EAKLLLAECLLAAGDVEAAQAILAALPLQAQDK------------ 201 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHcCChHHHHHHHHhCcccchhh------------
Confidence 3334455578999999999999999999886 889999999999999999999987633333221
Q ss_pred HHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHH
Q psy6461 476 RVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLY 555 (703)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 555 (703)
........+.++.+.... ++. ..+++.+..+|++ ...-
T Consensus 202 ----~~~~l~a~i~ll~qaa~~-----------------------------------~~~-~~l~~~~aadPdd--~~aa 239 (304)
T COG3118 202 ----AAHGLQAQIELLEQAAAT-----------------------------------PEI-QDLQRRLAADPDD--VEAA 239 (304)
T ss_pred ----HHHHHHHHHHHHHHHhcC-----------------------------------CCH-HHHHHHHHhCCCC--HHHH
Confidence 011111222232222211 222 3456667889998 6799
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 556 LLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 556 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
+.++..+...|+.+.|...+-..++.+-.
T Consensus 240 ~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 240 LALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 99999999999999998887777766543
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.93 E-value=0.96 Score=48.44 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch---HHHHHHHHHHHHHHhcCchH
Q psy6461 530 TKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE---MFEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~ 606 (703)
...+.|.++++...+..|+. ....+.-|+++...|+.++|+..|++++.....-. ...+|.... ...-..++++
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s--~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w-~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNS--ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAW-CHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHH-HHHHHchHHH
Confidence 45689999999999999997 56778889999999999999999999985332211 122232211 1223579999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCH-------HHHHHHHHHHhcc
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEI-------DRARAIYAHCSQI 653 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~-------~~A~~~~~~a~~~ 653 (703)
|...|.+.++....+.. ......|-++...|+. ++|...+.++-..
T Consensus 324 A~~~f~~L~~~s~WSka-~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKA-FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccccHHH-HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999998776543 2344456677888888 8888888877543
No 259
>KOG0890|consensus
Probab=95.84 E-value=7.3 Score=48.41 Aligned_cols=284 Identities=15% Similarity=0.190 Sum_probs=166.4
Q ss_pred HHHHHHHhhhc--CCchhHHHHHHHHHHhcCCC-ccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHH
Q psy6461 355 LEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPK-LAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLAT 431 (703)
Q Consensus 355 ~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 431 (703)
+.|..+.+... ....+-+-.+++++....-. ........+|+.+|++....|.++.|....-.|.+..+ + +
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~----~ 1703 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--P----E 1703 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--c----h
Confidence 55666665443 22344444555555442111 22345788999999999999999999999988877643 2 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCC-CCCcccccchhhHH-HHHHhhHHHHHHHHHHHHhcCCh------hHHHhH
Q psy6461 432 VWCEWAELELRAGQEEAALRLMARATATP-ARPVAYHDEAETVQ-ARVYKSIKLWSLYADLEESFGTF------KAYEKG 503 (703)
Q Consensus 432 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~e~a 503 (703)
++...|.++.+.|+-..|+.++++.++.+ |+....+.+....+ ..+++ .+...+....+..+++ +.|..+
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~--~~~L~~~~~~~es~n~~s~~ilk~Y~~~ 1781 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFK--KAKLKITKYLEESGNFESKDILKYYHDA 1781 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhh--hHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 89999999999999999999999999654 33221111110000 11111 2333444445555555 778888
Q ss_pred hhcCCCCc--hHHHHHHHHHHHHHHh------CCCChhH---HHHHHHHHHHhCCCcc----h--HHHHHHHHHHHHH--
Q psy6461 504 IALFKWPY--IFDIWNTYLTKFLSRY------GGTKLER---ARDLFEQCLEACPPRY----A--KTLYLLYAKLEEE-- 564 (703)
Q Consensus 504 l~~~~~~~--~~~~~~~y~~~~~~~~------~~~~~~~---A~~~~~~al~~~p~~~----~--~~~~~~~a~~~~~-- 564 (703)
.+..|.-. ++.+- .|..+++... ..|++.. +...|.+++.....+. + ..+|+.++-....
T Consensus 1782 ~ail~ewe~~hy~l~-~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~e 1860 (2382)
T KOG0890|consen 1782 KAILPEWEDKHYHLG-KYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVE 1860 (2382)
T ss_pred HHHcccccCceeeHH-HHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccc
Confidence 88876322 22222 3444444443 2344444 4444557776543331 0 2578776433322
Q ss_pred --------cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh-cCchHHHHHHHHHH----HhCCCcchHHHHHHHH
Q psy6461 565 --------HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI-YGIPKTRQIYERAI----ESLPEEPTRQMCLKFA 631 (703)
Q Consensus 565 --------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al----~~~p~~~~~~~~~~~a 631 (703)
.++.....+..+.++...|. ...+.+|-++..+. ...++.-.+..+.+ ...|... +|...|
T Consensus 1861 k~~r~ei~s~~~~~in~~i~~~~~~lp~---Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~---lW~~~a 1934 (2382)
T KOG0890|consen 1861 KAPRGEIVSKNLKLINSLIEEALEHLPT---YQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQT---LWQSAA 1934 (2382)
T ss_pred cCChhhhhhhhHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHH---HHHHHH
Confidence 23344555666777777786 34556677766653 34455555555544 4567532 788877
Q ss_pred HHHHHc-CCHHHHHHHHHHHhcc
Q psy6461 632 EMETKL-GEIDRARAIYAHCSQI 653 (703)
Q Consensus 632 ~~~~~~-g~~~~A~~~~~~a~~~ 653 (703)
.+=... ...+++..++.++..+
T Consensus 1935 ~~kS~~p~R~~R~keIL~k~~~~ 1957 (2382)
T KOG0890|consen 1935 LSKSNVPSRVERCKEILTKSRRQ 1957 (2382)
T ss_pred HHhcccHHHHHHHHHHHHHHHhc
Confidence 652221 2466788888888776
No 260
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.11 Score=46.44 Aligned_cols=102 Identities=19% Similarity=0.154 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
.-+.++..+...|++++|...++.++.. |.+..-..-+-+.++++..+.|++++|+..++......-.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~----------- 158 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA----------- 158 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-----------
Confidence 4466788888999999999999999876 3332122356788899999999999999998753332211
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
..+-...++++...|+ -++||..|++++...++.
T Consensus 159 -------~~~~elrGDill~kg~-----------------------------------k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 159 -------AIVAELRGDILLAKGD-----------------------------------KQEARAAYEKALESDASP 192 (207)
T ss_pred -------HHHHHHhhhHHHHcCc-----------------------------------hHHHHHHHHHHHHccCCh
Confidence 2333444555555554 499999999999998654
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.79 E-value=1.9 Score=43.86 Aligned_cols=91 Identities=8% Similarity=-0.013 Sum_probs=65.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH---cCChHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV---NDQLEDARLIFDKATLV-PYTKVEDLATVWCEWAELEL 441 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~ 441 (703)
.+++..++..+. +...|.+. ....+.+-..||-.+-+ .|+.++|+.++..++.. .+.++ +.+...|+++-
T Consensus 155 qdydamI~Lve~-l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~----d~~gL~GRIyK 228 (374)
T PF13281_consen 155 QDYDAMIKLVET-LEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP----DTLGLLGRIYK 228 (374)
T ss_pred hhHHHHHHHHHH-hhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh----HHHHHHHHHHH
Confidence 566767776664 33333222 33456778888888887 89999999999995554 44554 77788887763
Q ss_pred H---------cCCHHHHHHHHHHHhcCCCC
Q psy6461 442 R---------AGQEEAALRLMARATATPAR 462 (703)
Q Consensus 442 ~---------~~~~~~A~~~~~~a~~~~p~ 462 (703)
. ....++|+..|.++.+..|+
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 3 22478899999999999976
No 262
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.40 E-value=0.19 Score=39.67 Aligned_cols=79 Identities=11% Similarity=0.012 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHH
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 169 (703)
....+++.+..+|+++...+.++..++..|+++.|...+-..++.+|.......-..+..+....|..+.....|++-|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999865445555666666666665554555555433
No 263
>KOG2471|consensus
Probab=95.33 E-value=1.4 Score=45.21 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhcc---------CCCCcch-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLV---------PYTKVED-----LATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
-+|.++|-++.+.|.+..+..+|.+|++. .|..... -.++.+..+-.++..|++-.|.+.|.++++
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 44555666666666666666666666541 0100000 124555555556666666666666666665
Q ss_pred CCCC
Q psy6461 459 TPAR 462 (703)
Q Consensus 459 ~~p~ 462 (703)
.+..
T Consensus 364 vfh~ 367 (696)
T KOG2471|consen 364 VFHR 367 (696)
T ss_pred HHhc
Confidence 5443
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.23 E-value=0.027 Score=35.02 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPY 423 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 423 (703)
+|+.+|.++...|++++|...|+++++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566677777777777777777777776655
No 265
>KOG1308|consensus
Probab=95.09 E-value=0.027 Score=54.70 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=95.6
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHH
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKT 607 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A 607 (703)
..|.++.|++.|..++.++|.. ..++..-+.++.+.++...|++-+..|+.++|+.+...-|.+|.... +|++.+|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~--a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl--lg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPL--AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL--LGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCCch--hhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH--hhchHHH
Confidence 4677899999999999999998 67899999999999999999999999999999988777888887765 6799999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 608 RQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 608 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+..+..+.+.+-+-. ...|+. .+.-+.+..++=+..|+++.+.
T Consensus 202 a~dl~~a~kld~dE~-~~a~lK--eV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA-NSATLK--EVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhccccHH-HHHHHH--HhccchhhhhhchhHHHHHHHH
Confidence 999999999865422 223332 3444566677777777777653
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.07 E-value=4.8 Score=41.42 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=57.0
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
.....|+.++++..+.|.++.|...+.++....+........+.+.++.+....|+..+|...++..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999998864222111227888999999999999999999998887
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.98 E-value=0.89 Score=40.97 Aligned_cols=118 Identities=16% Similarity=0.029 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch-HHHHHHHHHHHHHHhcCchHHHHHH
Q psy6461 534 RARDLFEQCLEACPPR-YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE-MFEMFNIYIKKAAEIYGIPKTRQIY 611 (703)
Q Consensus 534 ~A~~~~~~al~~~p~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~ 611 (703)
+.....++....+|.. .....-+..+..+...|++++|...++.++....+.. ...+-.-......+.|.+|.|..+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5556666666666554 2345567778888889999999999999987654431 1112222333445578888888766
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 612 ERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 612 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
...-.. +-...+-...++++...|+.++||.-|++|+++.
T Consensus 150 ~t~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 543221 1122245567899999999999999999999985
No 268
>KOG1464|consensus
Probab=94.97 E-value=1.7 Score=41.14 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=38.1
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
..+.++|+.-|++.+...+...+=-.....+.+.+.++.+++++-...|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 347888999999988887654321124556677778888888888887776553
No 269
>KOG0376|consensus
Probab=94.88 E-value=0.029 Score=57.21 Aligned_cols=99 Identities=8% Similarity=0.059 Sum_probs=77.3
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.++|+.|.-.|-+|++.+|++..+|-..+...+. .+++..|...+.+|++.+|.....++.-|...+..+.+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK--------~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK--------VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee--------echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 5788888888889999888888887666533322 26788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSF 151 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 151 (703)
.+|...|+......|. .+.+-..+.++
T Consensus 89 ~~A~~~l~~~~~l~Pn--d~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPN--DPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhcCcC--cHHHHHHHHHH
Confidence 8888888888888883 45665555554
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.84 E-value=1.5 Score=47.00 Aligned_cols=157 Identities=17% Similarity=0.056 Sum_probs=103.9
Q ss_pred cCchhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcccCCC---CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy6461 43 NAPKAIINTIYERSLKELP-GSYKLWYNYLKLRRKQVKGKVI---TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD 118 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 118 (703)
.||.+.....+.++.+..- +++-.-+.++-++.- +...+. .....+.|.++++...+..|++.-.....|+++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~-~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLV-VPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH-HHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5899999999999877322 222111111111111 111111 24568889999999999999988888888999999
Q ss_pred ccChHHHHHHHHHHHHhCCc-cc-ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH--HH--HHHhcCCH---
Q psy6461 119 QHKITQTRHVFDRALRALPI-TQ-HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY--IE--YLSSIERL--- 189 (703)
Q Consensus 119 ~~~~~~A~~~~~~al~~~p~-~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~--~~--~~~~~~~~--- 189 (703)
.|++++|...|++++..... .+ ....+..++-++..+.++++|...|.+.++.+.-+...| +. .+...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 99999999999998852221 01 122233334455568899999999999998776654432 22 23566776
Q ss_pred ----HHHHHHHHHhh
Q psy6461 190 ----DEAAVKLAYIV 200 (703)
Q Consensus 190 ----~~A~~~~~~~~ 200 (703)
++|...+.++.
T Consensus 360 ~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 360 KEHKKEAEELFRKVP 374 (468)
T ss_pred hhhHHHHHHHHHHHH
Confidence 77777777664
No 271
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.77 E-value=0.069 Score=32.74 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhhcCC
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTT 284 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 284 (703)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5778899999999999999999999999886
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.77 E-value=0.059 Score=33.42 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
.+|..+|.++...|++++|...|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 47888899999999999999999999888873
No 273
>KOG0545|consensus
Probab=94.62 E-value=0.88 Score=42.35 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=46.4
Q ss_pred cCchhHHHHHHHHHHh--------hCCCCHH----------HHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 43 NAPKAIINTIYERSLK--------ELPGSYK----------LWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~--------~~P~~~~----------~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
.|++.+|...|..|+. .-|.+++ +.++|+++++. .|++-++.......|+..|+
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~--------~~e~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK--------KEEYYEVLEHCSEILRHHPG 262 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh--------HHHHHHHHHHHHHHHhcCCc
Confidence 4788888888887763 4455543 22233333222 14455555555555555555
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
|..+++.-+......=+.++|+.-|.++|+.+|
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 555555555544444455555555555555555
No 274
>KOG0551|consensus
Probab=94.47 E-value=2.9 Score=40.99 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=57.5
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
|..|.+.+++..|+..|.++|+....++.....+|..-+...+..|++-.|+.-..+|+..+|.+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 67778888999999999999998777766667889999999889999999999999999999986
No 275
>KOG0890|consensus
Probab=94.38 E-value=19 Score=45.10 Aligned_cols=281 Identities=15% Similarity=0.158 Sum_probs=145.2
Q ss_pred cCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhc---cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 382 VDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATL---VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 382 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
..+........+-|-+....-....+..+-+-.+++++- ..|+.-....++|+.+|++...+|+++.|...+-+|.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 334333333445666554433333334444444555422 23433345679999999999999999999999998888
Q ss_pred CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhh-cCCC--------Cc--hHHHHH---HHH
Q psy6461 459 TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIA-LFKW--------PY--IFDIWN---TYL 520 (703)
Q Consensus 459 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~-~~~~--------~~--~~~~~~---~y~ 520 (703)
..+ +.+....+.++...|+. .++++.++ .++. |. +..+-. -.+
T Consensus 1699 ~r~-------------------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~ 1759 (2382)
T KOG0890|consen 1699 SRL-------------------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKI 1759 (2382)
T ss_pred ccc-------------------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHH
Confidence 774 46788888888888775 55566664 3332 11 111111 111
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH------------cCChHH---HHHHHHHHhhccCcc
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE------------HGLARH---AMAVYERATGAVLPE 585 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~------------~g~~~~---A~~~~~~al~~~p~~ 585 (703)
..+.+.-+....+.....|..+.+..|.... -+..+|.++.+ .|++.. ++-.|.+++.....+
T Consensus 1760 ~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~--~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1760 TKYLEESGNFESKDILKYYHDAKAILPEWED--KHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQH 1837 (2382)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHcccccC--ceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchh
Confidence 1222322334556677788888888775422 33344433321 344444 333445666655544
Q ss_pred h---HHHHHHHHHHHHH-------------HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy6461 586 E---MFEMFNIYIKKAA-------------EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG-EIDRARAIYA 648 (703)
Q Consensus 586 ~---~~~~~~~~~~~~~-------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~ 648 (703)
. .+.+...|+++-. ..++....-.+.+.+++..|- ...+..|..+..+.- ..++.-.++.
T Consensus 1838 iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~---Y~f~ta~sQLlSRicH~~~dV~~vl~ 1914 (2382)
T KOG0890|consen 1838 LYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPT---YQFYTAYSQLLSRICHPNQDVARVLK 1914 (2382)
T ss_pred HHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 2 2334444555310 011222333445556666663 224556666665533 3444555555
Q ss_pred HHhccc---CCCCChHhHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q psy6461 649 HCSQIC---DPRVTAGFWAAWKSFEITH-GNEDTMREMLRIKRS 688 (703)
Q Consensus 649 ~a~~~~---~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~ 688 (703)
+.+... =| ...+|.-.+.+-... -..+..++++++++.
T Consensus 1915 ~II~~l~~~YP--qq~lW~~~a~~kS~~p~R~~R~keIL~k~~~ 1956 (2382)
T KOG0890|consen 1915 HIIAKLVLAYP--QQTLWQSAALSKSNVPSRVERCKEILTKSRR 1956 (2382)
T ss_pred HHHHHHHHhCc--hHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 544321 12 255666655544333 123444444444433
No 276
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.35 E-value=0.058 Score=33.10 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556677777777777777777777776665
No 277
>KOG0545|consensus
Probab=94.27 E-value=0.29 Score=45.45 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHHHHHh--------cCCCH----------HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHH
Q psy6461 85 DPSYEDVNNTFERSLVF--------MHKMP----------RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWP 146 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 146 (703)
.|++.+|..-|..|+.. -|.+| .+.++|.+++...|++-++.......|+..|. +..++.
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~--nvKA~f 268 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG--NVKAYF 268 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc--hHHHHH
Confidence 46777777777777644 25443 56677778888888888888888888888883 456666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 147 LYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 147 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
.-+......=+..+|..-|.++|+.+|.-..
T Consensus 269 rRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 269 RRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 5566555555567777888888888776543
No 278
>KOG1308|consensus
Probab=94.26 E-value=0.027 Score=54.77 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=75.4
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
+.|.++.|+..|-+++..+|.+..++...+.++++.++...|.+-+..|+.++|++....-|..+++- ..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r--llg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER--LLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH--HhhchHHHHH
Confidence 35889999999999999999999999999999999999999999999999999976555556666555 6788999999
Q ss_pred HHHHHHhhCCC
Q psy6461 164 VFRRYLKLFPE 174 (703)
Q Consensus 164 ~~~~~l~~~p~ 174 (703)
.|..+++++-+
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 99999887643
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.11 E-value=0.11 Score=32.71 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhh
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEEAIQT 281 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 281 (703)
+|..+|.+|.+.|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3788999999999999999999996653
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.10 E-value=8 Score=39.75 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=93.5
Q ss_pred CCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc-CCC--
Q psy6461 350 NPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV-PYT-- 424 (703)
Q Consensus 350 ~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~-- 424 (703)
.......|+..+.+.. |.++.|...+.++....++.. ...+.+.+.++++.+..|+..+|+..++..++. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~--~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE--SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 3456778888888765 899999999988776432211 114668899999999999999999999888871 110
Q ss_pred ---------------------------CcchHHHHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 425 ---------------------------KVEDLATVWCEWAELELRA------GQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 425 ---------------------------~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
.......++..+|.+.... +..+++...|..+++.+|..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-------- 291 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-------- 291 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH--------
Confidence 1122357788888887777 88999999999999999973
Q ss_pred hHHHHHHhhHHHHHHHHHHHHh
Q psy6461 472 TVQARVYKSIKLWSLYADLEES 493 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~ 493 (703)
...|..++.+...
T Consensus 292 ---------~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 ---------EKAWHSWALFNDK 304 (352)
T ss_pred ---------HHHHHHHHHHHHH
Confidence 6788888776543
No 281
>KOG3824|consensus
Probab=94.05 E-value=0.12 Score=49.48 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=56.6
Q ss_pred HHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 114 RFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIE 181 (703)
Q Consensus 114 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 181 (703)
.-....|+.++|.++|+-||...| .++++...++.|....++.-+|..+|-+++...|.+.++++.
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP--~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAP--TNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCC--CCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 334557999999999999999999 568999999999888888889999999999999999876543
No 282
>KOG3824|consensus
Probab=94.04 E-value=0.17 Score=48.46 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=63.5
Q ss_pred hcCCCCh-HHHHHH---HHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHH
Q psy6461 25 LRNPFSV-KHWLRY---IEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV 100 (703)
Q Consensus 25 ~~~P~~~-~~w~~~---~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 100 (703)
+.+|... ++-..+ .+...+|+.++|..+|+.|+...|.++++.+.+..+.... +++-+|-..|-+|+.
T Consensus 107 e~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~--------~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 107 ENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH--------NEIVEADQCYVKALT 178 (472)
T ss_pred ccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh--------hhhHhhhhhhheeee
Confidence 5667655 333322 2344489999999999999999999999999999987543 678889999999999
Q ss_pred hcCCCHHHHHHHH
Q psy6461 101 FMHKMPRIWLDYG 113 (703)
Q Consensus 101 ~~p~~~~~~~~~~ 113 (703)
+.|.+..+..+..
T Consensus 179 isP~nseALvnR~ 191 (472)
T KOG3824|consen 179 ISPGNSEALVNRA 191 (472)
T ss_pred eCCCchHHHhhhh
Confidence 9999987765443
No 283
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.03 E-value=2.4 Score=43.49 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=91.0
Q ss_pred hHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCC--------------------------CCHHHHHHHHH
Q psy6461 20 YEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELP--------------------------GSYKLWYNYLK 72 (703)
Q Consensus 20 ~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P--------------------------~~~~~w~~~~~ 72 (703)
+-..|+.+|..++..+++..... +|+.+.|....||||=.+- +|-.+|+.+-+
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 44567899999999999999999 9999998888888863221 34455555444
Q ss_pred HHHHhcccCCCCchhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHH-HhccChHHHHHHHHHHHH--------hCCccccc
Q psy6461 73 LRRKQVKGKVITDPSYEDVNNTFERSLVFMHK-MPRIWLDYGRFL-MDQHKITQTRHVFDRALR--------ALPITQHH 142 (703)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~--------~~p~~~~~ 142 (703)
....... .|.+.-|.+..+-.++.+|. +|-.-...+..+ .+.++++--..+++.... ..|. -
T Consensus 109 ~i~~L~~-----RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~ 180 (360)
T PF04910_consen 109 YIQSLGR-----RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---F 180 (360)
T ss_pred HHHHHHh-----cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---H
Confidence 4333222 36788888888888888887 653333333333 234555555555555433 2331 1
Q ss_pred ccHHHHHHHHHhcCCh---------------HHHHHHHHHHHhhCCCCHH
Q psy6461 143 RVWPLYLSFVKSHAVP---------------ETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 143 ~~~~~~~~~~~~~~~~---------------~~A~~~~~~~l~~~p~~~~ 177 (703)
..-..++.+. .++. +.|...+.+++...|.-..
T Consensus 181 a~S~aLA~~~--l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 181 AFSIALAYFR--LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred HHHHHHHHHH--hcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 1111223332 2333 6788888888888877643
No 284
>KOG2300|consensus
Probab=93.43 E-value=11 Score=39.10 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=112.1
Q ss_pred hhcCCchhHHHHHHHHHHhcC--CC--ccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHH
Q psy6461 363 LFDGKPLDIIRTYTEAVKTVD--PK--LAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAE 438 (703)
Q Consensus 363 ~~~~~~~~a~~~~~~a~~~~~--~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 438 (703)
+..|+..+|+.....+.+-.. |. ......+++...+|.+...-|-++.|...|..|++.- ++.+-...+-..++-
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAI 412 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHH
Confidence 334777777766655544321 21 1112346777777877778899999999999999873 232222445667788
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHH
Q psy6461 439 LELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNT 518 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~ 518 (703)
.|++.|+.+.-.++++..-..+... +..+ .. -..+++.++-+...
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p~nt~s--~ssq----~l----~a~~~~v~glfaf~------------------------- 457 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGPLNTNS--LSSQ----RL----EASILYVYGLFAFK------------------------- 457 (629)
T ss_pred HHHHhccHHHHHHHHHhcCCCCCCc--chHH----HH----HHHHHHHHHHHHHH-------------------------
Confidence 8999998888777777633222221 1000 00 01223333333332
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhCCC-c---chHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc---CcchHHHHH
Q psy6461 519 YLTKFLSRYGGTKLERARDLFEQCLEACPP-R---YAKTLYLLYAKLEEEHGLARHAMAVYERATGAV---LPEEMFEMF 591 (703)
Q Consensus 519 y~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 591 (703)
.+++.+|+..+.+.++.... + ...-....++.+....|+-.+++.+..-+++.. |+ -.+.+|
T Consensus 458 ----------qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D-i~vqLw 526 (629)
T KOG2300|consen 458 ----------QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD-IPVQLW 526 (629)
T ss_pred ----------hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC-chHHHH
Confidence 34568999999988886421 1 112356778888889999999999888887643 33 345666
Q ss_pred HH
Q psy6461 592 NI 593 (703)
Q Consensus 592 ~~ 593 (703)
..
T Consensus 527 s~ 528 (629)
T KOG2300|consen 527 SS 528 (629)
T ss_pred HH
Confidence 53
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.10 E-value=0.17 Score=31.89 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGA 581 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~ 581 (703)
.|..+|.++...|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678899999999999999999996543
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.88 E-value=11 Score=37.40 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=64.5
Q ss_pred CCchhHHHHHHHHHHhc---CCCccCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHhhccC----C---CCcc---hHHH
Q psy6461 366 GKPLDIIRTYTEAVKTV---DPKLAVGKLHTLWIEFGKFYEVND-QLEDARLIFDKATLVP----Y---TKVE---DLAT 431 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~---~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~----~---~~~~---~~~~ 431 (703)
|+.+.|...|.++-... +|.. .....++.+..|......+ +++.|...++++.... . .+++ --..
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~-~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDM-AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHH-HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 88899999999986643 2221 1234677888888888888 9999999999987772 1 1111 1134
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHhcCCCCC
Q psy6461 432 VWCEWAELELRAGQE---EAALRLMARATATPARP 463 (703)
Q Consensus 432 ~~~~~~~~~~~~~~~---~~A~~~~~~a~~~~p~~ 463 (703)
+...++..++..+.. ++|..+++.+....|+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~ 120 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNK 120 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC
Confidence 566677777776554 45666666666666663
No 287
>KOG1464|consensus
Probab=92.65 E-value=8.9 Score=36.45 Aligned_cols=127 Identities=11% Similarity=0.133 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHhh--cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC----
Q psy6461 30 SVKHWLRYIEHKK--NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH---- 103 (703)
Q Consensus 30 ~~~~w~~~~~~~~--~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---- 103 (703)
+++.=.+|-..-. ..+++.|.+.|++.++..|+-.+.-...+ .++.+.+...+++++....|.+.+....
T Consensus 25 dVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKAL----KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 25 DVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKAL----KQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHH----HHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4444444433322 67899999999999999987665333322 2334444455788888888777765421
Q ss_pred --CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHH----HHHHHHhcCChHH
Q psy6461 104 --KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPL----YLSFVKSHAVPET 160 (703)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~----~~~~~~~~~~~~~ 160 (703)
.+...-.....+.....+.+--...|+..|....+..+..+|.. ++.++...+++.+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~k 163 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTK 163 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHH
Confidence 12222233333333455666677777776665443345677754 3444444444433
No 288
>KOG0376|consensus
Probab=92.60 E-value=0.16 Score=52.05 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=81.3
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
.+.++.|..+|-+|+..+|++..+|-+-+..+.+.+++..|..=+.+|++.+|. ....+..-+......+.+.+|...
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~--~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT--YIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch--hhheeeeccHHHHhHHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999999999994 456666666777788888999999
Q ss_pred HHHHHhhCCCCHHH
Q psy6461 165 FRRYLKLFPEDAED 178 (703)
Q Consensus 165 ~~~~l~~~p~~~~~ 178 (703)
|+......|+...+
T Consensus 95 l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 95 LEKVKKLAPNDPDA 108 (476)
T ss_pred HHHhhhcCcCcHHH
Confidence 99999999999754
No 289
>KOG0530|consensus
Probab=92.57 E-value=9.8 Score=36.20 Aligned_cols=227 Identities=9% Similarity=0.045 Sum_probs=139.6
Q ss_pred HHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhh
Q psy6461 402 YEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR-AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKS 480 (703)
Q Consensus 402 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 480 (703)
+.+...-.+|.++-+.++.++|-+. .+|.---.++.. ..+..+-+..+++.++-+|++
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnY----TVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN----------------- 111 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANY----TVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN----------------- 111 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccc----hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-----------------
Confidence 3345667899999999999999876 666544333322 345778889999999999985
Q ss_pred HHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 481 IKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLE-RARDLFEQCLEACPPRYAKTLYLLYA 559 (703)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~a 559 (703)
-++|...-.+.+..|+. . +-....+.++..+.++ ..+|..--
T Consensus 112 YQvWHHRr~ive~l~d~-----------------------------------s~rELef~~~~l~~DaKN--YHaWshRq 154 (318)
T KOG0530|consen 112 YQVWHHRRVIVELLGDP-----------------------------------SFRELEFTKLMLDDDAKN--YHAWSHRQ 154 (318)
T ss_pred hhHHHHHHHHHHHhcCc-----------------------------------ccchHHHHHHHHhccccc--hhhhHHHH
Confidence 78888776666655553 2 4556677777777777 45777777
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC-----chHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 560 KLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG-----IPKTRQIYERAIESLPEEPTRQMCLKFAEME 634 (703)
Q Consensus 560 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 634 (703)
.+....|.++.-++.....++.+--+.+.+...-|.-... .|- .++-.......+...|++.. .|..+.-++
T Consensus 155 W~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~-~~~~~~~~le~El~yt~~~I~~vP~NeS--aWnYL~G~l 231 (318)
T KOG0530|consen 155 WVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNT-KGVISKAELERELNYTKDKILLVPNNES--AWNYLKGLL 231 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEec-cCCccHHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHH
Confidence 7777788888888888888877655543333322221111 112 22334566677888999887 798887777
Q ss_pred HH-cC--CHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH------cCCHHHHHHHHHHHHHHH
Q psy6461 635 TK-LG--EIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT------HGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 635 ~~-~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~ 690 (703)
.. .| ...+......... ...+...+.+.....++... .+..+-+.++...+..++
T Consensus 232 ~~d~gl~s~s~vv~f~~~l~-~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La 295 (318)
T KOG0530|consen 232 ELDSGLSSDSKVVSFVENLY-LQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLA 295 (318)
T ss_pred HhccCCcCCchHHHHHHHHh-hccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 75 55 1222333322222 11233345555555555422 233333455555555555
No 290
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.55 E-value=1.7 Score=34.33 Aligned_cols=74 Identities=9% Similarity=-0.022 Sum_probs=51.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhccChHHHHH
Q psy6461 50 NTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM--PRIWLDYGRFLMDQHKITQTRH 127 (703)
Q Consensus 50 ~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~ 127 (703)
...+++.++.+|.+......++..+... |++++|...+-.+++.+|+. ......++.++...|.-+....
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~--------g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~ 79 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAA--------GDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVS 79 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHT--------T-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHH
Confidence 4678999999999999999999887764 99999999999999998754 4555566666655555443333
Q ss_pred HHHH
Q psy6461 128 VFDR 131 (703)
Q Consensus 128 ~~~~ 131 (703)
-|.|
T Consensus 80 ~~RR 83 (90)
T PF14561_consen 80 EYRR 83 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 291
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.52 E-value=4.8 Score=42.54 Aligned_cols=98 Identities=19% Similarity=0.274 Sum_probs=63.9
Q ss_pred hccChHHHHHHHH--HHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHH
Q psy6461 118 DQHKITQTRHVFD--RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVK 195 (703)
Q Consensus 118 ~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~ 195 (703)
..++++++.+... +.+...| .......+.|+.++|.++.|..+ ..++..-..++...|+++.|...
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~----~~~~~~i~~fL~~~G~~e~AL~~--------~~D~~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP----KDQGQSIARFLEKKGYPELALQF--------VTDPDHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHH--------SS-HHHHHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCC----hhHHHHHHHHHHHCCCHHHHHhh--------cCChHHHhHHHHhcCCHHHHHHH
Confidence 3577887766665 2233344 34467788999999988877655 22334567888899999988777
Q ss_pred HHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHH
Q psy6461 196 LAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIY 275 (703)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 275 (703)
..+. .....|..||+...++|+++-|...|
T Consensus 341 a~~~--------------------------------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 341 AKEL--------------------------------------------------DDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp CCCC--------------------------------------------------STHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHhc--------------------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4322 12358999999999999999999999
Q ss_pred HH
Q psy6461 276 EE 277 (703)
Q Consensus 276 ~~ 277 (703)
++
T Consensus 371 ~k 372 (443)
T PF04053_consen 371 QK 372 (443)
T ss_dssp HH
T ss_pred Hh
Confidence 88
No 292
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.42 E-value=0.24 Score=29.55 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPY 423 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 423 (703)
+|..+|.++...|+++.|...|+++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455566666666666666666666666554
No 293
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.75 E-value=0.21 Score=45.85 Aligned_cols=56 Identities=25% Similarity=0.339 Sum_probs=39.3
Q ss_pred HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 600 EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+.++.+.|.++|.++++..|+... -|..++.+..+.|+++.|-+-|++.+++.|++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~--gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAA--GWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhh--hhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345666777777777777776554 67777777777777777777777777775444
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.67 E-value=6.8 Score=35.61 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc-hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC--cchH--HHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE--EPTR--QMC 627 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~--~~~ 627 (703)
..+..+|.++.+.|+.++|.+.|.++....... ....++...+...+..+++..+.....++-...-. +... .+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 688999999999999999999999998876443 35677788888888889999999888888765322 1111 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 628 LKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 628 ~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..-+-.....|++..|-..|-.+..-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 33344445688999999888776544
No 295
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.56 E-value=9.1 Score=39.36 Aligned_cols=166 Identities=12% Similarity=0.042 Sum_probs=93.9
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHH--HHhcCCh
Q psy6461 420 LVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADL--EESFGTF 497 (703)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 497 (703)
+.+|-++ ...++++.++.++|+.+.|.++++||+-.... .+...+..+ ....|..
T Consensus 34 ~~~PyHi----dtLlqls~v~~~~gd~~~A~~lleRALf~~e~-------------------~~~~~F~~~~~~~~~g~~ 90 (360)
T PF04910_consen 34 QKNPYHI----DTLLQLSEVYRQQGDHAQANDLLERALFAFER-------------------AFHPSFSPFRSNLTSGNC 90 (360)
T ss_pred HHCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------------HHHHHhhhhhcccccCcc
Confidence 4478887 88899999999999999999999998754321 011111000 0111111
Q ss_pred hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHH-HHcCChHHHHHHHH
Q psy6461 498 KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLE-EEHGLARHAMAVYE 576 (703)
Q Consensus 498 ~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~ 576 (703)
-=-+..+.+..+|.............|-+..|.+..+-.+..+|.+. +..-+.+++++ .+.+.++=-+.+++
T Consensus 91 ------rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~D-P~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 91 ------RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDED-PLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred ------ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 00011122333333322211111124667899999999999999932 33444444443 46778877777777
Q ss_pred HHhhc--------cCcchHHHHHHHHHHHHHHhcCc---------------hHHHHHHHHHHHhCCC
Q psy6461 577 RATGA--------VLPEEMFEMFNIYIKKAAEIYGI---------------PKTRQIYERAIESLPE 620 (703)
Q Consensus 577 ~al~~--------~p~~~~~~~~~~~~~~~~~~~~~---------------~~A~~~~~~al~~~p~ 620 (703)
..... .|+ +..-.+...+. .++- +.|....++|+..+|.
T Consensus 164 ~~~~~~~~~~~~~lPn---~a~S~aLA~~~--l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 164 SPLAKCYRNWLSLLPN---FAFSIALAYFR--LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hHhhhhhhhhhhhCcc---HHHHHHHHHHH--hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 65442 232 11112222222 3344 8999999999999884
No 296
>KOG2041|consensus
Probab=91.29 E-value=25 Score=38.28 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=25.1
Q ss_pred cCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q psy6461 102 MHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133 (703)
Q Consensus 102 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 133 (703)
+| +|++|..++......-.++.|...|-|.=
T Consensus 689 nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NP-HPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 56 68999999998887778888888887753
No 297
>KOG0985|consensus
Probab=91.21 E-value=32 Score=39.36 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
+..+.|...-+++ +.|.+|..++......|.+.+|...|-+|= +| ..+....+...+.|.+++-++.+
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyikad--Dp-----s~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DP-----SNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhcC--Cc-----HHHHHHHHHHHhcCcHHHHHHHH
Confidence 4566666666655 568999999999999999999999998862 44 44788888888899999988888
Q ss_pred HHHHhh--CCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhH
Q psy6461 166 RRYLKL--FPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGG 243 (703)
Q Consensus 166 ~~~l~~--~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (703)
.-+-+. .|.-...++-.+.++++..+-...+. |+..+. -.+.++- ...+.+++.+
T Consensus 1157 ~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~------------gpN~A~-i~~vGdr----------cf~~~~y~aA 1213 (1666)
T KOG0985|consen 1157 LMARKKVREPYIDSELIFAYAKTNRLTELEEFIA------------GPNVAN-IQQVGDR----------CFEEKMYEAA 1213 (1666)
T ss_pred HHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc------------CCCchh-HHHHhHH----------HhhhhhhHHH
Confidence 776654 34444456656667777765444331 110000 0000000 0011111111
Q ss_pred hhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHH
Q psy6461 244 LRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAI 279 (703)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 279 (703)
.-.+ .....|..++.-+...|++..|...-+++-
T Consensus 1214 kl~y--~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1214 KLLY--SNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHH--HHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1001 123568888888899999988887777643
No 298
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.08 E-value=3.7 Score=33.40 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=70.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHH
Q psy6461 437 AELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIW 516 (703)
Q Consensus 437 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~ 516 (703)
+.-+++.|+.-+|+++.+..+...+++.+ ...++..-+.+...+... -.+..+-
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~--------------~~~lh~~QG~if~~lA~~------------ten~d~k 56 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDES--------------SWLLHRLQGTIFYKLAKK------------TENPDVK 56 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCc--------------hHHHHHHHhHHHHHHHHh------------ccCchHH
Confidence 34457899999999999999988877510 123333334443332211 1233444
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q psy6461 517 NTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAV 582 (703)
Q Consensus 517 ~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 582 (703)
..|+ -.+.+.|.++....|.. +.+.+.+|+-.-....|+++..-.++++...
T Consensus 57 ~~yL------------l~sve~~s~a~~Lsp~~--A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 57 FRYL------------LGSVECFSRAVELSPDS--AHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHH------------HHhHHHHHHHhccChhH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 4454 46889999999999987 5677777776655667788888888877653
No 299
>KOG0530|consensus
Probab=91.03 E-value=15 Score=35.08 Aligned_cols=129 Identities=9% Similarity=0.068 Sum_probs=86.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
..+..+|..+-+.++..+|.+..+|-=.-.. +..+. .+..+=...++..+..+|+|.++|-.---+....|+.
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~i-L~~l~------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~ 128 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVI-LRHLM------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP 128 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHH-HHHhH------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc
Confidence 5677889999999999999999999433222 22221 3466667888888888999999998776666666766
Q ss_pred H-HHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 123 T-QTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 123 ~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
. .-.....+++..+. .+-.+|..--=+....+.++.-...-...++.+--+-.+|-
T Consensus 129 s~rELef~~~~l~~Da--KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDDA--KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred ccchHHHHHHHHhccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 6 55666777777555 45667766544444556666666666666666554444554
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.97 E-value=2.9 Score=38.03 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCC
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTT 284 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 284 (703)
-..+..+|++|.+.|+.+.|.+.|.++...+.+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~ 68 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS 68 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Confidence 468899999999999999999999998876544
No 301
>KOG4507|consensus
Probab=90.60 E-value=1.4 Score=46.31 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.|+...|..++..|+...|.... ...+.+|++..+.|--..|-..+-+++.+.... +..+.....+...+++++.|.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se--pl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSE--PLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC--chHHHhcchhHHHHhhhHHHH
Confidence 57788899999999988887532 357788888888888888888888888877433 445555666666677899999
Q ss_pred HHHHHHHHhCCCcchHH
Q psy6461 609 QIYERAIESLPEEPTRQ 625 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~ 625 (703)
+.|.+|+++.|+++..+
T Consensus 697 ~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECE 713 (886)
T ss_pred HHHHHHHhcCCCChhhH
Confidence 99999999999887644
No 302
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.57 E-value=0.35 Score=44.42 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=36.9
Q ss_pred HHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 116 LMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 116 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
....++.+.+..+|.++|...| .....|...+.+..+.|+.+.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap--~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAP--EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCc--hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3445566666666666666666 3455666666666666666666666666666666653
No 303
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.16 E-value=0.51 Score=27.98 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
..|..++.++...++++.|...|+++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4566667777777777777777777776665
No 304
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.89 E-value=38 Score=37.97 Aligned_cols=165 Identities=8% Similarity=0.052 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHhh--cCchhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC-
Q psy6461 30 SVKHWLRYIEHKK--NAPKAIINTIYERSLKELPG--SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK- 104 (703)
Q Consensus 30 ~~~~w~~~~~~~~--~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 104 (703)
.....++++..+. ..+++.|+..++|++..... -.++ .-.+.+.+..+.. ..+...|....++++...-.
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~-k~~~~~ll~~i~~----~~~~~~a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL-KFRCQFLLARIYF----KTNPKAALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhcc
Confidence 3456677787766 78999999999999887754 2222 1111222211111 12233499999999888533
Q ss_pred CHHHHHHHHHHH-----HhccChHHHHHHHHHHHHhCCccccccc--HHHH--HHHHHhcCChHHHHHHHHHHHhh----
Q psy6461 105 MPRIWLDYGRFL-----MDQHKITQTRHVFDRALRALPITQHHRV--WPLY--LSFVKSHAVPETAVRVFRRYLKL---- 171 (703)
Q Consensus 105 ~~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~--~~~~--~~~~~~~~~~~~A~~~~~~~l~~---- 171 (703)
....|.-..+++ ...++...|...++.+....-....+.+ ...+ +.+....+.++.+++.++++...
T Consensus 133 ~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 234444443333 2236899999999998885421112222 1222 22233456677787777766332
Q ss_pred --CCCC----HHHHH---HH--HHhcCCHHHHHHHHHHh
Q psy6461 172 --FPED----AEDYI---EY--LSSIERLDEAAVKLAYI 199 (703)
Q Consensus 172 --~p~~----~~~~~---~~--~~~~~~~~~A~~~~~~~ 199 (703)
+|.. ...|. ++ ....|+++.+...++.+
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 11232 33 25678877777666554
No 305
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.61 E-value=3.1 Score=39.08 Aligned_cols=97 Identities=21% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCchhHHHHHHHHHHhcCCCc-cCCchhHHHHHHHHHHHHcCC-------hHHHHHHHHHhhccC--CCCcchHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKL-AVGKLHTLWIEFGKFYEVNDQ-------LEDARLIFDKATLVP--YTKVEDLATVWCE 435 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~~~--~~~~~~~~~~~~~ 435 (703)
.+.+.|+..|.-|+-...-.. .+.....+++.+|=+|...|+ +..|...|++++... |.....-..+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 456778888887765411110 111345678887777777776 466778888887763 2222223467788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 436 WAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 436 ~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
+|.+..+.|++++|...|.+.+.....
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 899999999999999999999987654
No 306
>KOG1538|consensus
Probab=89.13 E-value=37 Score=36.77 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhCchHHHHHHHHH
Q psy6461 255 WNSLADYYIRSGLFERARDIYEE 277 (703)
Q Consensus 255 ~~~l~~~~~~~~~~~~A~~~~~~ 277 (703)
|..++.--...-+++-|++.|.+
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~r 610 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIR 610 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHH
Confidence 55555555555555555555555
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.78 E-value=36 Score=36.17 Aligned_cols=137 Identities=16% Similarity=0.148 Sum_probs=72.9
Q ss_pred HhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH
Q psy6461 361 VRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE 440 (703)
Q Consensus 361 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 440 (703)
..+..++++.+....+.. .+-|.. ..+.....+.++.++|-.+.|..+- +++ ...+.++
T Consensus 270 ~av~~~d~~~v~~~i~~~--~ll~~i----~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~----~~rFeLA--- 328 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS--NLLPNI----PKDQGQSIARFLEKKGYPELALQFV--------TDP----DHRFELA--- 328 (443)
T ss_dssp HHHHTT-HHH-----HHH--HTGGG------HHHHHHHHHHHHHTT-HHHHHHHS--------S-H----HHHHHHH---
T ss_pred HHHHcCChhhhhhhhhhh--hhcccC----ChhHHHHHHHHHHHCCCHHHHHhhc--------CCh----HHHhHHH---
Confidence 334446766665554311 111111 1234567778888888777776652 222 4444444
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHH
Q psy6461 441 LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYL 520 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~ 520 (703)
++.|+++.|.++.+. . + ++..|...++....+|++
T Consensus 329 l~lg~L~~A~~~a~~---~--~-----------------~~~~W~~Lg~~AL~~g~~----------------------- 363 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE---L--D-----------------DPEKWKQLGDEALRQGNI----------------------- 363 (443)
T ss_dssp HHCT-HHHHHHHCCC---C--S-----------------THHHHHHHHHHHHHTTBH-----------------------
T ss_pred HhcCCHHHHHHHHHh---c--C-----------------cHHHHHHHHHHHHHcCCH-----------------------
Confidence 578888888776421 1 1 267888888888877776
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
+-|..+|+++- + +-.+.-++...|+.++-.++.+.|......+
T Consensus 364 ------------~lAe~c~~k~~----d------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n 406 (443)
T PF04053_consen 364 ------------ELAEECYQKAK----D------FSGLLLLYSSTGDREKLSKLAKIAEERGDIN 406 (443)
T ss_dssp ------------HHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH
T ss_pred ------------HHHHHHHHhhc----C------ccccHHHHHHhCCHHHHHHHHHHHHHccCHH
Confidence 66666666532 2 2233344556788777777777766655443
No 308
>KOG0551|consensus
Probab=87.87 E-value=2.5 Score=41.37 Aligned_cols=99 Identities=10% Similarity=-0.018 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE--MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
.-+-.=|+.+.+.++|..|+..|..+++....+. ...+|..-.....-.|++.+|..=..++++..|.+. ..++.=
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~--Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL--KAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh--hhhhhh
Confidence 3444445555566666666666666665543332 112333333333334566666666666666666543 244444
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
|.+......++.|.++.+..+++
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Confidence 55555555555555555555444
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.37 E-value=20 Score=31.63 Aligned_cols=66 Identities=17% Similarity=0.015 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
..+.....-...++.+.+..++.-.-...|+.+ ++-+.-+.+.++.|++.+|+.+|+......|..
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~----e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFP----ELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 344444555567899999999998877789887 777788888899999999999999988887763
No 310
>KOG2422|consensus
Probab=87.23 E-value=20 Score=38.19 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=93.0
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhh-----CC----------------CCHHHHHHHHHHHHHhcccCCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKE-----LP----------------GSYKLWYNYLKLRRKQVKGKVI 83 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~-----~P----------------~~~~~w~~~~~~~~~~~~~~~~ 83 (703)
-+|..++..+.++.+.. +|+.+-+..+.+|+|=. .| .+-.+.+.+-+.......
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~---- 354 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQ---- 354 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHh----
Confidence 46889999999999999 99988877777776632 12 222333322222221111
Q ss_pred CchhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-hccChHHHHHHHHHH-----HHhCCcccccccHHHHHHHHHhcC
Q psy6461 84 TDPSYEDVNNTFERSLVFMHK-MPRIWLDYGRFLM-DQHKITQTRHVFDRA-----LRALPITQHHRVWPLYLSFVKSHA 156 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~-~~~~~~~A~~~~~~a-----l~~~p~~~~~~~~~~~~~~~~~~~ 156 (703)
.|.+.-|....+-.++.+|. +|-.-+-.+..+. +..++.=.+..++.. |...|. -..-..++.|+....
T Consensus 355 -RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN---~~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 355 -RGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN---FGYSLALARFFLRKN 430 (665)
T ss_pred -cCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC---chHHHHHHHHHHhcC
Confidence 37788899999999999987 7766555555553 345666666666655 344552 223345677777655
Q ss_pred C---hHHHHHHHHHHHhhCCCCH
Q psy6461 157 V---PETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 157 ~---~~~A~~~~~~~l~~~p~~~ 176 (703)
. ...|...+.+|+..+|.-.
T Consensus 431 ~~~~rqsa~~~l~qAl~~~P~vl 453 (665)
T KOG2422|consen 431 EEDDRQSALNALLQALKHHPLVL 453 (665)
T ss_pred ChhhHHHHHHHHHHHHHhCcHHH
Confidence 4 4678889999999988654
No 311
>PRK10941 hypothetical protein; Provisional
Probab=87.07 E-value=6.9 Score=38.18 Aligned_cols=54 Identities=11% Similarity=-0.056 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 530 TKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
+++++|..+.+..+...|++ +.-|..-|-++.+.|.+..|+.-++..+..+|++
T Consensus 195 ~~~~~AL~~~e~ll~l~P~d--p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 195 KQMELALRASEALLQFDPED--PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 34444444444444444444 3334444444444444444444444444444443
No 312
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.01 E-value=8.2 Score=37.25 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=41.3
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHH
Q psy6461 110 LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168 (703)
Q Consensus 110 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 168 (703)
...+..+...|.+.+|..+.+++++.+| -+...|..+...+...|+--.|.+.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp--L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP--LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh--hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3446666777888888888888888888 34677778777777777766666666654
No 313
>PRK10941 hypothetical protein; Provisional
Probab=86.37 E-value=6.8 Score=38.25 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=26.7
Q ss_pred hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 601 IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
.++++.|..+.++.+...|+++. -|-..+-++.+.|.+..|+.=++..++.+|.
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~dp~--e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 194 EKQMELALRASEALLQFDPEDPY--EIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34445555555555555555443 3444444555555555555555555555443
No 314
>KOG0529|consensus
Probab=85.69 E-value=6.8 Score=39.78 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=64.2
Q ss_pred CchhhHHHHhcCCCChHHHHHHHHHhh---cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 16 EDLPYEEEILRNPFSVKHWLRYIEHKK---NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 16 ~~~~~e~~l~~~P~~~~~w~~~~~~~~---~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
+-...+.+|+.||.++.+|..-.-... ..++..=..+.+++++.+|.|...| .|-++...+..... ....+=.
T Consensus 94 eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W-~YRRfV~~~~~~~~---~~~~~El 169 (421)
T KOG0529|consen 94 ELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW-HYRRFVVEQAERSR---NLEKEEL 169 (421)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch-HHHHHHHHHHhccc---ccchhHH
Confidence 334566778888888888888776555 3456777788888888888888888 45555554432211 1233446
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 93 NTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 93 ~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
+...+++..++.|.++|..-..++
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHH
Confidence 677777777888888886544443
No 315
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.65 E-value=9.8 Score=35.80 Aligned_cols=96 Identities=22% Similarity=0.241 Sum_probs=60.3
Q ss_pred CChhHHHHHHHHHHHh----CCCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCc
Q psy6461 530 TKLERARDLFEQCLEA----CPPR-YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGI 604 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~----~p~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 604 (703)
..+++|.+.|.-|+-. .++. .-..+++.+|.++...|+-+.....+
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl----------------------------- 141 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFL----------------------------- 141 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHH-----------------------------
Confidence 3457777777766653 1111 11357888888888777743333333
Q ss_pred hHHHHHHHHHHHhC--CCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 605 PKTRQIYERAIESL--PEEP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 605 ~~A~~~~~~al~~~--p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
..|...|+++++.. |..+ ...+....|.+..+.|++++|.++|.+.+...
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33555566666543 2221 12256667889999999999999999999873
No 316
>KOG2300|consensus
Probab=85.60 E-value=50 Score=34.57 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=87.1
Q ss_pred CCChhHHHHHHHHHHHh---CCCc-----chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHH--HHHHHH
Q psy6461 529 GTKLERARDLFEQCLEA---CPPR-----YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFN--IYIKKA 598 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~---~p~~-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~ 598 (703)
.+++.+|..-...+..- .|.- ..+.+...+|.+-...|-++.|..-|..|++.....+. ..+. ...-.+
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl-~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL-QAFCNLNLAISY 414 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH-HHHHHHhHHHHH
Confidence 45566666555555443 3431 11234455555555667778888888777776544321 1111 111122
Q ss_pred HHhcCchHHHHHHHHHHHhCCCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC----ChHhHHHH
Q psy6461 599 AEIYGIPKTRQIYERAIESLPEEPT--------RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV----TAGFWAAW 666 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~ 666 (703)
.+.++ +..+++-.-...|.+.. ..+.+-++-+....|++.+|+..+...+++...+. .+.....+
T Consensus 415 L~~~~---~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 415 LRIGD---AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HHhcc---HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 22333 33344333334554321 12556677777888899999988888888742221 12223334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Q psy6461 667 KSFEITHGNEDTMREMLRIKRSVQAQYNT 695 (703)
Q Consensus 667 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 695 (703)
.-+....|+-.+.+++++=+-.+.+.++.
T Consensus 492 s~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 44455667777777777666666655543
No 317
>KOG2041|consensus
Probab=85.51 E-value=62 Score=35.52 Aligned_cols=75 Identities=11% Similarity=-0.012 Sum_probs=44.3
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|.+++|.+.|-.+=+. ++ -..+..+.|++-+..++++.+-.-... ......|...+........
T Consensus 748 g~feeaek~yld~drr-----------DL---Aielr~klgDwfrV~qL~r~g~~d~dD--~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR-----------DL---AIELRKKLGDWFRVYQLIRNGGSDDDD--EGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred cchhHhhhhhhccchh-----------hh---hHHHHHhhhhHHHHHHHHHccCCCcch--HHHHHHHHHHHHHHHHHHH
Confidence 7777777777654221 01 123444566776666666654332111 2234677788877777777
Q ss_pred HHHHHHHHHHH
Q psy6461 446 EEAALRLMARA 456 (703)
Q Consensus 446 ~~~A~~~~~~a 456 (703)
+++|.+.|..+
T Consensus 812 We~A~~yY~~~ 822 (1189)
T KOG2041|consen 812 WEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHhc
Confidence 88888887654
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.80 E-value=17 Score=33.30 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC--cchHHHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE--EPTRQMCLKF 630 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~ 630 (703)
.+|..|.+ .|+ +.|+..|-++-+...-+ .+.+....+.++. ..+.++++.++-++|+..+. +..+++...+
T Consensus 112 llYy~Wsr----~~d-~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sL 184 (203)
T PF11207_consen 112 LLYYHWSR----FGD-QEALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSL 184 (203)
T ss_pred HHHHHhhc----cCc-HHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 56777753 344 56777777655443222 2456666677775 46888999999999987543 3456688899
Q ss_pred HHHHHHcCCHHHHHHH
Q psy6461 631 AEMETKLGEIDRARAI 646 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~ 646 (703)
+.++.+.|+++.|--+
T Consensus 185 as~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 185 ASIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHHHhcchhhhhhh
Confidence 9999999998887543
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.29 E-value=7.7 Score=37.83 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
...++..++..+...|+++.+...+++.+..+|.+. .+|..+...+.+.|+...|+..|++.-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E----~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDE----PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345678888889999999999999999999999886 8999999999999999999999987654
No 320
>KOG4507|consensus
Probab=84.13 E-value=5.7 Score=42.05 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP-RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
|+...|.+-+.+|+-..|... -....+++++...|-.-.|-.++.++|.++- ..+..+...++.+....+.+.|++.
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~--sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS--SEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc--cCchHHHhcchhHHHHhhhHHHHHH
Confidence 677788888888888877533 3345778888888877788888888888774 2356666677777777888899999
Q ss_pred HHHHHhhCCCCHHH
Q psy6461 165 FRRYLKLFPEDAED 178 (703)
Q Consensus 165 ~~~~l~~~p~~~~~ 178 (703)
|+.+++.+|++...
T Consensus 699 ~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 699 FRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHhcCCCChhh
Confidence 99999988888763
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.51 E-value=2.6 Score=27.15 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhc
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTV 282 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 282 (703)
..+..+|..|...|++++|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467899999999999999999999998753
No 322
>PF13041 PPR_2: PPR repeat family
Probab=83.14 E-value=4.2 Score=27.68 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhh--cCCcccHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQT--VTTVRDFTQ 290 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~ 290 (703)
..|+.+...+.+.|++++|.++|++..+. .|+...+..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 57999999999999999999999998885 354444333
No 323
>KOG2471|consensus
Probab=83.12 E-value=65 Score=33.83 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQF 298 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~ 298 (703)
.++.++.|-.|...|++-.|-+.|..+++.+-.. .++|.+.++-
T Consensus 335 ~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n---PrlWLRlAEc 378 (696)
T KOG2471|consen 335 MEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN---PRLWLRLAEC 378 (696)
T ss_pred hhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 4678889999999999999999999999875432 3677766654
No 324
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.84 E-value=9.9 Score=26.43 Aligned_cols=24 Identities=8% Similarity=-0.107 Sum_probs=13.9
Q ss_pred HHHcCChHHHHHHHHHHhhccCcc
Q psy6461 562 EEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 562 ~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
..+.|++++|++..+.+++..|++
T Consensus 11 ~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHhhhHHHHHHHHHHHHhhCCCc
Confidence 346666666666666666666665
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.59 E-value=7.1 Score=27.14 Aligned_cols=32 Identities=13% Similarity=-0.121 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccCCCCc
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKV 426 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 426 (703)
.+.+|-.+.+.|++++|+...+.+|++.|.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 45556777889999999999999999999886
No 326
>KOG1538|consensus
Probab=81.51 E-value=77 Score=34.50 Aligned_cols=215 Identities=13% Similarity=0.160 Sum_probs=102.8
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccC-----------CCCchhHHHHHHHHHHH
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGK-----------VITDPSYEDVNNTFERS 98 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~-----------~~~~~~~~~A~~~~~~a 98 (703)
...|..++.... .-+++-|+..|.|.- +. -|+.++--+.++-.+. |.-.|++.+|.++|.+.
T Consensus 585 ~~DW~~LA~~ALeAL~f~~ARkAY~rVR-----dl-~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 585 DTDWRELAMEALEALDFETARKAYIRVR-----DL-RYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred cchHHHHHHHHHhhhhhHHHHHHHHHHh-----cc-HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 367999988877 788999999998873 22 2444442222111111 11246677777777652
Q ss_pred HHhcCCCHHHH--------HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHH---
Q psy6461 99 LVFMHKMPRIW--------LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR--- 167 (703)
Q Consensus 99 l~~~p~~~~~~--------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--- 167 (703)
....++. .++++=++..|.-++-..+.++--...-+-..+ ...++++...|+.++|+.+.-.
T Consensus 659 ----G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~~d~gW 731 (1081)
T KOG1538|consen 659 ----GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEICGDHGW 731 (1081)
T ss_pred ----CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhhhcccH
Confidence 2222221 133343444555444444443322211100011 2345555566666665543211
Q ss_pred -------HHhhCC---CCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHH
Q psy6461 168 -------YLKLFP---EDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVD 237 (703)
Q Consensus 168 -------~l~~~p---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 237 (703)
+-+++. ++......++.....+--|.++|.++-+-... .+.-....-|.+...+-.++|+-
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksi--VqlHve~~~W~eAFalAe~hPe~------- 802 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSL--VQLHVETQRWDEAFALAEKHPEF------- 802 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHH--hhheeecccchHhHhhhhhCccc-------
Confidence 111111 11112223333333333344444433110000 00111223344444444444432
Q ss_pred HHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 238 AIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
..++++-+|.|+.+..++++|.+.|-++-.
T Consensus 803 -------------~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 803 -------------KDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred -------------cccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 236888999999999999999999887654
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.85 E-value=11 Score=36.72 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 106 PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
..+...++..+...|+++.+...+++.+..+| .+...|..+...+...|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555677777778888888888888888888 4578888888888888888888888887654
No 328
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.71 E-value=40 Score=29.79 Aligned_cols=87 Identities=15% Similarity=0.048 Sum_probs=60.7
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.++.+.+..++...--..|.. +.+-+.-+.+....|++.+|+.+|+......|... .-...+.++....+-..-|
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~--~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p---~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEF--PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP---YAKALLALCLYALGDPSWR 97 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHcCChHHH
Confidence 346788889998888889988 56777778888889999999999998877766542 2334444444444445556
Q ss_pred HHHHHHHHhCCC
Q psy6461 609 QIYERAIESLPE 620 (703)
Q Consensus 609 ~~~~~al~~~p~ 620 (703)
..-+.+++..|+
T Consensus 98 ~~A~evle~~~d 109 (160)
T PF09613_consen 98 RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHhcCCC
Confidence 666666665543
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.22 E-value=3.2 Score=23.75 Aligned_cols=22 Identities=5% Similarity=0.173 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFD 416 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~ 416 (703)
.+.++..+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4455556666666666665554
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.94 E-value=4.3 Score=26.91 Aligned_cols=28 Identities=21% Similarity=-0.008 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccC
Q psy6461 556 LLYAKLEEEHGLARHAMAVYERATGAVL 583 (703)
Q Consensus 556 ~~~a~~~~~~g~~~~A~~~~~~al~~~p 583 (703)
+.+|..|...|+.+.|+.+++..+...+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 5678888888999999999888885433
No 331
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.63 E-value=1.1e+02 Score=34.28 Aligned_cols=115 Identities=13% Similarity=0.187 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH------HHHHHHHHHH
Q psy6461 47 AIINTIYERSLKELPGSY----KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP------RIWLDYGRFL 116 (703)
Q Consensus 47 ~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~ 116 (703)
..|+..++.+++.++-++ .+.+.++..+..+ ..+++.|+..+++++.....+. .....++.++
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~e-------T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~ 110 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEE-------TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIY 110 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 355677777776555443 4556666666654 2568888888888887764321 1222345665
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH-----hcCChHHHHHHHHHHHh
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK-----SHAVPETAVRVFRRYLK 170 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----~~~~~~~A~~~~~~~l~ 170 (703)
.+.+... |.+..+++++..-. .....|....++.. ..+++..|...++.+..
T Consensus 111 ~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~ 167 (608)
T PF10345_consen 111 FKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQ 167 (608)
T ss_pred HhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5556555 88888888875442 12344555555431 12455555555555543
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.49 E-value=2.7 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhccChHHHHHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFD 130 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~ 130 (703)
.+...++..+..+|+.++|+.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 455667777777777777777765
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.47 E-value=4.4 Score=26.00 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHh
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRA 135 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 135 (703)
..+..++.++..+|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34566777777778888888888877764
No 334
>KOG3364|consensus
Probab=79.28 E-value=37 Score=28.90 Aligned_cols=72 Identities=10% Similarity=0.033 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHhh-ccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH
Q psy6461 552 KTLYLLYAKLEEEHGL---ARHAMAVYERATG-AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~---~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 624 (703)
....+.++..+.+..+ ..+.+.+++..++ ..|......+|..-+. ..+.+++++++.+....|+..|+|.++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg-~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVG-HYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHH-HHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3567777777766554 4566778888886 5555443333332222 235689999999999999999988764
No 335
>PF12854 PPR_1: PPR repeat
Probab=78.41 E-value=4.6 Score=24.92 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEE 277 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 277 (703)
.-.|..++..+.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35799999999999999999999986
No 336
>PF12854 PPR_1: PPR repeat
Probab=78.41 E-value=4.5 Score=24.98 Aligned_cols=27 Identities=7% Similarity=0.013 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDR 131 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~ 131 (703)
+...|..++..+.+.|++++|.++|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 568888999999999999999999886
No 337
>KOG3807|consensus
Probab=77.75 E-value=31 Score=34.03 Aligned_cols=127 Identities=14% Similarity=0.107 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHH
Q psy6461 47 AIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTR 126 (703)
Q Consensus 47 ~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~ 126 (703)
..-++.-..||+++|++....+.+++-+. ..+.+|.++|++|++....... -.+-...+|...+|
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa----------~Ti~~AE~l~k~ALka~e~~yr----~sqq~qh~~~~~da- 265 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEA----------TTIVDAERLFKQALKAGETIYR----QSQQCQHQSPQHEA- 265 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhh----------hhHHHHHHHHHHHHHHHHHHHh----hHHHHhhhccchhh-
Confidence 33455667789999999999888876432 3477899999999987542211 11112222322222
Q ss_pred HHHHHHHHhCCcccccccH--HHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH-----HHHHHHHhcCCHHHHHHHH
Q psy6461 127 HVFDRALRALPITQHHRVW--PLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE-----DYIEYLSSIERLDEAAVKL 196 (703)
Q Consensus 127 ~~~~~al~~~p~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~~~A~~~~ 196 (703)
..+.+. +..++ ..++.+-.+.|+..+|++.++...+-.|-... .++..+....-|.+...++
T Consensus 266 -----~~rRDt---nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 266 -----QLRRDT---NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred -----hhhccc---chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222232 22333 34566677889999999999998888884322 2344444555555544444
No 338
>KOG4814|consensus
Probab=77.71 E-value=12 Score=40.28 Aligned_cols=101 Identities=19% Similarity=0.213 Sum_probs=74.8
Q ss_pred HHHHHHHhhhc-CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHH
Q psy6461 355 LEWHKRVRLFD-GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVW 433 (703)
Q Consensus 355 ~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (703)
.+|......++ .++..+++.|...+..++.+........+...++-+|....++++|.+++++|-+.+|.++ -..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~----l~q 431 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP----LCQ 431 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH----HHH
Confidence 45666666555 7888899999999988766555445566777788889999999999999999999999886 333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy6461 434 CEWAELELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 434 ~~~~~~~~~~~~~~~A~~~~~~a~~~ 459 (703)
+.........|+-++|+.........
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 33333445678888888877665543
No 339
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=76.32 E-value=19 Score=29.42 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=25.0
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYN 69 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~ 69 (703)
.|+.-+|.++.|..+...+++...|..
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~l 35 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWLL 35 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHHH
Confidence 799999999999999999999999844
No 340
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.22 E-value=9.4 Score=30.39 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=28.6
Q ss_pred CCchhHHHHHHHHHHhcCCCccCC---chhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVG---KLHTLWIEFGKFYEVNDQLEDARLIFDKATLV 421 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 421 (703)
+|+..|.+.+.+..+......... ......+.++.++...|++++|...+++++++
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666666666665555422211111 12334455555555566666666666666555
No 341
>KOG0529|consensus
Probab=75.83 E-value=70 Score=32.87 Aligned_cols=131 Identities=11% Similarity=0.173 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc-CCC---CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-
Q psy6461 46 KAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG-KVI---TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH- 120 (703)
Q Consensus 46 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~-~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~- 120 (703)
-+.+.++=...++.+|.-..+|----......... ... ....+++-..+...+++.+|++..+|.....++.+++
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~ 124 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH 124 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence 45677777788899999999994332222211110 000 0123555677888999999999999999999888765
Q ss_pred -ChHHHHHHHHHHHHhCCcccccccHHHHHHHHH----hc-CChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 121 -KITQTRHVFDRALRALPITQHHRVWPLYLSFVK----SH-AVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 121 -~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~-~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
+...=.++.+++|+.+|. +-..|..- +|-. .. +...+-+....+++..++.+..+|
T Consensus 125 ~~~~~EL~lcek~L~~D~R--Nfh~W~YR-RfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaW 186 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPR--NFHAWHYR-RFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAW 186 (421)
T ss_pred chHHHHHHHHHHHHhcCcc--cccchHHH-HHHHHHHhcccccchhHHHHHHHHHhccchhhhHH
Confidence 357778899999999995 45666542 2221 11 112334566667777677776665
No 342
>KOG3783|consensus
Probab=75.70 E-value=1.2e+02 Score=32.49 Aligned_cols=70 Identities=10% Similarity=-0.069 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
.....+..++.+...|+.+.|+.+++.++...-.. -..-.++..+-...-..++..|-..+.........
T Consensus 266 ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ--~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW 335 (546)
T KOG3783|consen 266 GALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQ--VKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW 335 (546)
T ss_pred CccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Confidence 34456777888888888999999999888721111 11223444444445566788888888777766655
No 343
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.46 E-value=1.2e+02 Score=32.30 Aligned_cols=30 Identities=7% Similarity=-0.059 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 433 WCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 433 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
...+..+..++.+..-...+..+.+....+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~ 98 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGES 98 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcch
Confidence 444444555555556666666666665543
No 344
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=74.99 E-value=4.5 Score=23.84 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
+|..+.+.|.+.|++++|..+|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 478899999999999999999998665
No 345
>KOG3807|consensus
Probab=74.90 E-value=42 Score=33.14 Aligned_cols=130 Identities=14% Similarity=0.026 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIY 611 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 611 (703)
..+-.+.-..+++++|.. ...|+.++.-+ .--..+|.++|++|++..... +.. -+.....+...
T Consensus 200 p~~RI~~A~~ALeIN~eC--A~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~-----yr~-sqq~qh~~~~~------ 263 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNEC--ATAYVLLAEEE--ATTIVDAERLFKQALKAGETI-----YRQ-SQQCQHQSPQH------ 263 (556)
T ss_pred cHHHHHHHHHHHhcCchh--hhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH-----Hhh-HHHHhhhccch------
Confidence 355556667789999997 56888887644 346788999999998865432 110 00000111111
Q ss_pred HHHHHhCCCcchHHHH--HHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHH
Q psy6461 612 ERAIESLPEEPTRQMC--LKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMR 680 (703)
Q Consensus 612 ~~al~~~p~~~~~~~~--~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 680 (703)
+...+.+.+ +.++ -.++.+-++.|+..+|.+.+....+-.|-.....+.+++.+.+.....+.|..
T Consensus 264 da~~rRDtn---vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 264 EAQLRRDTN---VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred hhhhhcccc---hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122221 2233 35677778889988888888776655443323445555544444333333333
No 346
>KOG0276|consensus
Probab=74.89 E-value=48 Score=35.67 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 133 (703)
|+++.|..+..+ .+++.=|..++...++.+++..|.+.|.++-
T Consensus 651 grl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 651 GRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred CcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 555555554433 3577888888888888888888888888764
No 347
>KOG2422|consensus
Probab=74.33 E-value=1.3e+02 Score=32.41 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=46.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHH-HHhcCchHHHHHHHHH-----HHhCCCcchHHHHHHHH
Q psy6461 558 YAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKA-AEIYGIPKTRQIYERA-----IESLPEEPTRQMCLKFA 631 (703)
Q Consensus 558 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a-----l~~~p~~~~~~~~~~~a 631 (703)
+.....+.|=+..|....+-.++..|..++..+.. .|+.+ .+..++.=.+.+++.. |...|+-+ .-+.+|
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~-~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~---yS~AlA 423 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILY-LIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG---YSLALA 423 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHH-HHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch---HHHHHH
Confidence 33444456667777777776677666533222211 12222 2233444444444433 33445422 345556
Q ss_pred HHHHHcCC---HHHHHHHHHHHhcccC
Q psy6461 632 EMETKLGE---IDRARAIYAHCSQICD 655 (703)
Q Consensus 632 ~~~~~~g~---~~~A~~~~~~a~~~~~ 655 (703)
.++.+... -..|...+.+|+.+.|
T Consensus 424 ~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 424 RFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 66555444 4556666666666643
No 348
>KOG1550|consensus
Probab=73.82 E-value=85 Score=34.64 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=85.0
Q ss_pred CChhHHHHHHHHHHH-------hCCCcchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHhhccCcchHHHHHHHHHHH
Q psy6461 530 TKLERARDLFEQCLE-------ACPPRYAKTLYLLYAKLEEEHG-----LARHAMAVYERATGAVLPEEMFEMFNIYIKK 597 (703)
Q Consensus 530 ~~~~~A~~~~~~al~-------~~p~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 597 (703)
.+++.|...|+.+.+ .- . +.....++.++.+.. +.+.|..+|.++......+... ..+.+..
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~--~--~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~--~lg~~~~ 336 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKG--L--PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQY--LLGVLYE 336 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc--C--CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHH--HHHHHHH
Confidence 456777777777766 22 1 235667777776643 6788999999998887666433 3333322
Q ss_pred HHH-hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 598 AAE-IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL----GEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 598 ~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
... ..+..+|..+|..|-+.. ++...+.++.++..- -+...|..+|+++.++..+ ...|....-++..
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~---~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAG----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP---SAAYLLGAFYEYG 409 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh---hhHHHHHHHHHHc
Confidence 211 246779999999998764 233566666665542 3688999999999988422 3344443333333
Q ss_pred cCCHHHH
Q psy6461 673 HGNEDTM 679 (703)
Q Consensus 673 ~g~~~~~ 679 (703)
.|..+.+
T Consensus 410 ~~~~~~~ 416 (552)
T KOG1550|consen 410 VGRYDTA 416 (552)
T ss_pred cccccHH
Confidence 3544443
No 349
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.93 E-value=18 Score=28.72 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 626 MCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
.++..+.+....|+.++|...++.|+++...
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 5677788888899999999999999887543
No 350
>PF13041 PPR_2: PPR repeat family
Probab=72.72 E-value=14 Score=25.09 Aligned_cols=31 Identities=6% Similarity=-0.045 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHh
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRA 135 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 135 (703)
|...|..+...+.+.|++++|.++|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3456666677777777777777777776664
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.74 E-value=84 Score=29.00 Aligned_cols=74 Identities=14% Similarity=0.032 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc--hHHHHHHHHHHHHHHhcCchHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE--EMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
+.|+..|-++-. .|.--.+++...+|.+|. .-+.++++.++-+++...+.+ ..+.++...+....+.++++.|-
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 788888877433 343223688999999886 468999999999999876544 34678888888888888887764
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.44 E-value=1.9e+02 Score=33.04 Aligned_cols=244 Identities=16% Similarity=0.091 Sum_probs=126.0
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccC--CCCc--chH-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP--YTKV--EDL-ATVWCEWAELELRAGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~--~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
.++.+.+.++=......++.+|..+..++...- |... .+. .+.--.-+.+....|++++|.++.+.++..-|..-
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 345566666666667888888888887765432 2211 111 22222234455678999999999999998887642
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
.+. ........+.+..-. |++++|+.+..++.+
T Consensus 493 ~~~------------r~~~~sv~~~a~~~~-----------------------------------G~~~~Al~~~~~a~~ 525 (894)
T COG2909 493 YRS------------RIVALSVLGEAAHIR-----------------------------------GELTQALALMQQAEQ 525 (894)
T ss_pred chh------------hhhhhhhhhHHHHHh-----------------------------------chHHHHHHHHHHHHH
Confidence 111 011122222222222 445778877777776
Q ss_pred hC----CCcchHHHHHHH--HHHHHHcCC--hHHHHHHHHHH----hhccCcchHHHHHHHHHHHHHH----hcCchHHH
Q psy6461 545 AC----PPRYAKTLYLLY--AKLEEEHGL--ARHAMAVYERA----TGAVLPEEMFEMFNIYIKKAAE----IYGIPKTR 608 (703)
Q Consensus 545 ~~----p~~~~~~~~~~~--a~~~~~~g~--~~~A~~~~~~a----l~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~ 608 (703)
.. ... -.+|..+ +.+....|. +.+..+.|... +...|-+. -...+++..... .+.-.+++
T Consensus 526 ~a~~~~~~~--l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~--f~~~~r~~ll~~~~r~~~~~~ear 601 (894)
T COG2909 526 MARQHDVYH--LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE--FLVRIRAQLLRAWLRLDLAEAEAR 601 (894)
T ss_pred HHHHcccHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch--hHHHHHHHHHHHHHHHhhhhHHhh
Confidence 52 222 2355444 444556672 22222333222 12222211 122222222211 23334455
Q ss_pred HHHHHHHHhCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHH-----HHHHHHcCCHHHHHHH
Q psy6461 609 QIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAW-----KSFEITHGNEDTMREM 682 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~ 682 (703)
.-++-.....|.....- ....++.++...|+.++|...+..+............|... ..+....|+.+.+...
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~ 681 (894)
T COG2909 602 LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEW 681 (894)
T ss_pred hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHH
Confidence 55554444455432211 22467888889999999999998876543222123334332 2333455787777666
Q ss_pred HH
Q psy6461 683 LR 684 (703)
Q Consensus 683 ~~ 684 (703)
..
T Consensus 682 l~ 683 (894)
T COG2909 682 LL 683 (894)
T ss_pred HH
Confidence 53
No 353
>KOG1310|consensus
Probab=71.04 E-value=22 Score=37.47 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ---HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
+....++..|.+++...|....++..++.++++. |+.-.|.+-...|++.+| ..-..|..++++....+++.+|+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~--s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP--SIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh--HHHHHHHHHHHHHHHHhhHHHhh
Confidence 4567789999999999999999999999999885 566678888888999999 45788888899988889999999
Q ss_pred HHHHHHHhhCCCCH
Q psy6461 163 RVFRRYLKLFPEDA 176 (703)
Q Consensus 163 ~~~~~~l~~~p~~~ 176 (703)
.....+...+|.+.
T Consensus 466 ~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 466 SCHWALQMSFPTDV 479 (758)
T ss_pred hhHHHHhhcCchhh
Confidence 98888888888553
No 354
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.56 E-value=11 Score=23.77 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCChHHHHHH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLI 414 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~ 414 (703)
.|..+|-.+..+|++++|+.+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 455566666666777777777
No 355
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=70.24 E-value=53 Score=33.99 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC--------
Q psy6461 568 ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGE-------- 639 (703)
Q Consensus 568 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~-------- 639 (703)
.-+|..++|.++...|.+....+|. +..+...|-.+.|..+|...=-+.-.... ..++.+-+ ....|.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlL--vrlY~~LG~~~~A~~~~~~L~iK~IQ~DT-L~h~~~~r-~~~~~~~~~~~~~~ 274 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLL--VRLYSLLGAGSLALEHYESLDIKNIQLDT-LGHLILDR-LSTLGPFKSAPENL 274 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHH--HHHHHHcCCHHHHHHHHHhcChHHHHHHH-hHHHHHHH-HhccCcccccchHH
Confidence 4567777777777777775444444 33444466777777777543221100000 01111111 111233
Q ss_pred HHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q psy6461 640 IDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYN 694 (703)
Q Consensus 640 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 694 (703)
++.+..+|..+..- ...+......+|++.+..++++-.+++.+|..
T Consensus 275 ~~~~~~fy~~~~~~---------~~e~i~~af~~gsysKi~ef~~F~~rL~~S~~ 320 (365)
T PF09797_consen 275 LENALKFYDNSEKE---------TPEFIIKAFENGSYSKIEEFIEFRERLRNSLQ 320 (365)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence 33444444443321 11234444567999999999888888887765
No 356
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.09 E-value=74 Score=27.72 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=46.0
Q ss_pred HHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 401 FYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 401 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
.-...++++++..++...-...|+.+ ++-+.-+.+.+..|++.+|..+|++.....+.
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~----e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLK----ELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcc----ccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 33347888999999887777778887 66666777788999999999999987777655
No 357
>KOG4279|consensus
Probab=69.57 E-value=86 Score=34.78 Aligned_cols=55 Identities=9% Similarity=-0.042 Sum_probs=39.0
Q ss_pred HcCChHHHHHHHHHhhccC-CCCcchHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcCCCC
Q psy6461 404 VNDQLEDARLIFDKATLVP-YTKVEDLATVWCEWAELELR---------AGQEEAALRLMARATATPAR 462 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~p~ 462 (703)
+.|+-++|..+.-.+++.. |..+ .+++.-+++|-- .+..+.|.++|++|.+..|.
T Consensus 255 r~GDRakAL~~~l~lve~eg~vap----Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAP----DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCC----ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 3578888888888777763 3343 566666666522 35677889999999998886
No 358
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=69.29 E-value=12 Score=24.26 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHH
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQ 124 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 124 (703)
.|.+|+-.+|++...++.|+.++..+|+.+.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~r 34 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPAR 34 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHH
Confidence 4556666777777777777777777776643
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.34 E-value=1.7e+02 Score=31.16 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=37.6
Q ss_pred HHHHHcCChHHHHHHHHHhhccCCCCcchHH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 400 KFYEVNDQLEDARLIFDKATLVPYTKVEDLA----------------TVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
..|....++.+|+.+..-.++.+-.+.-+-. +-|+....+.....++..+..-|++-+.....+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 3344566777777777777776554441100 111112222222456778888888887776665
Q ss_pred cccc
Q psy6461 464 VAYH 467 (703)
Q Consensus 464 ~~~~ 467 (703)
.-|+
T Consensus 293 FVfH 296 (711)
T COG1747 293 FVFH 296 (711)
T ss_pred eEEe
Confidence 5443
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.20 E-value=31 Score=35.84 Aligned_cols=123 Identities=9% Similarity=0.015 Sum_probs=82.5
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.|++-.|-+-+..+++..|.. +......+.+....|+++.+...+..+-+.....++ .....+.-..+++.++.|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~--p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~--~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQD--PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS--TLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCC--chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch--HHHHHHHhhhchhhHHHHH
Confidence 466677777788889999988 567888899999999999999888655444332211 2223334444578888888
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 609 QIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
.+-+..|...-+.+. +.---+---...|=+++|...|++.+.+.+|+
T Consensus 378 s~a~~~l~~eie~~e--i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEE--VLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChh--heeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 888877765444433 11111112234677899999999998886654
No 361
>KOG2066|consensus
Probab=67.72 E-value=2.1e+02 Score=32.13 Aligned_cols=77 Identities=12% Similarity=0.038 Sum_probs=49.6
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHH
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVY 478 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 478 (703)
..++.+.+.+++|..+-+......|.. ...++|..|+.-++-.|++++|-...-+...-+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~--~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~------------------ 422 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERF--VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNN------------------ 422 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcccc--chHHHHHHHHHHHHhcchHHHHHhhhHHHhcch------------------
Confidence 456677888888888877655543321 123778888887888888888877655544332
Q ss_pred hhHHHHHHHHHHHHhcCCh
Q psy6461 479 KSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~ 497 (703)
...|..........++.
T Consensus 423 --~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 423 --AAEWELWVFKFAELDQL 439 (846)
T ss_pred --HHHHHHHHHHhcccccc
Confidence 45666666555555554
No 362
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=67.57 E-value=11 Score=22.75 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhh
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEEAIQT 281 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 281 (703)
.|+.+...|.+.|++++|..+|++....
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4788899999999999999999997653
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.57 E-value=11 Score=24.97 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCchHHHHHHHHHHHhh
Q psy6461 256 NSLADYYIRSGLFERARDIYEEAIQT 281 (703)
Q Consensus 256 ~~l~~~~~~~~~~~~A~~~~~~~l~~ 281 (703)
+.++..|...|+.+.|+.+++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46889999999999999999999964
No 364
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=67.56 E-value=10 Score=24.59 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=25.0
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAII 49 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a 49 (703)
..|.++|..+|.+-..++-|++... +|+..++
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 4677888888888888888888887 7777543
No 365
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=67.55 E-value=74 Score=31.17 Aligned_cols=130 Identities=12% Similarity=0.030 Sum_probs=75.4
Q ss_pred HhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy6461 40 HKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQ-VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD 118 (703)
Q Consensus 40 ~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 118 (703)
+...+++++....|++..+....+......|....... +.........-......++.=++..|+|...|+..|.++..
T Consensus 10 LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~ 89 (277)
T PF13226_consen 10 LLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVH 89 (277)
T ss_pred HHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 33489999999999999876655333332233221110 00000000111246777788888899999999999998755
Q ss_pred ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6461 119 QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYL 183 (703)
Q Consensus 119 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 183 (703)
.. .--|.-....+ ....-|.....+ .+.|...+.+++.++|....++..++
T Consensus 90 ~A-------w~~RG~~~A~~-V~~~~W~~~~~~------~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 90 RA-------WDIRGSGYAST-VTEAQWLGAHQA------CDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred HH-------HHHHccchhcc-cCHHHHHHHHHH------HHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 32 11111111111 224556655444 27788888888988888887655443
No 366
>KOG2581|consensus
Probab=67.19 E-value=1.6e+02 Score=30.37 Aligned_cols=126 Identities=10% Similarity=0.106 Sum_probs=69.7
Q ss_pred CChhHHHHHHHHHHHhCC-Cc------chHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc----CcchHHHHHHHHHHHH
Q psy6461 530 TKLERARDLFEQCLEACP-PR------YAKTLYLLYAKLEEEHGLARHAMAVYERATGAV----LPEEMFEMFNIYIKKA 598 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p-~~------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~ 598 (703)
+++.+|..+-+..+.... .+ ....+|..+...+...|+...-+..+...+... .......+-+..+..+
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 345666655555443211 11 123466777777777787777777665554332 1111223344455555
Q ss_pred HHhcCchHHHHHHHHHHHhCCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 599 AEIYGIPKTRQIYERAIESLPEEPT----RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
...+.+++|-.+..+.. .|++.. .......+.+-.-+++++.|...+-.|+.+.|.+
T Consensus 220 L~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 56677777776665553 343322 2223333445455788888888888888886544
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.17 E-value=34 Score=31.76 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=57.4
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch-HHHHHHHHHHHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE-MFEMFNIYIKKAA 599 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~ 599 (703)
.+.++++....+.-++..|.+ ......+.+++.-.|++++|..-++-+-+..|... .+.+|...+..+.
T Consensus 14 ~~sL~dai~~a~~qVkakPtd--a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea 83 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTD--AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEA 83 (273)
T ss_pred hccHHHHHHHHHHHHhcCCcc--ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 456799999999999999998 55788888999999999999999999988888753 4567776666553
No 368
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=66.96 E-value=8.8 Score=22.48 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 433 WCEWAELELRAGQEEAALRLMARAT 457 (703)
Q Consensus 433 ~~~~~~~~~~~~~~~~A~~~~~~a~ 457 (703)
|..+...+.+.|++++|.++|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 5555666666666666666666544
No 369
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.77 E-value=2.5e+02 Score=32.19 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=54.2
Q ss_pred hhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHH--HH
Q psy6461 362 RLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWA--EL 439 (703)
Q Consensus 362 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~ 439 (703)
.+..|+++.+.+.-+.++..++... ......+....+....-.|++++|+.+...+.+..-..--.+..+|..+. .+
T Consensus 468 al~~~~~e~a~~lar~al~~L~~~~-~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i 546 (894)
T COG2909 468 ALNRGDPEEAEDLARLALVQLPEAA-YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI 546 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHhccccc-chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445889999999999998865543 22334566777888888999999999998887763222112235565553 33
Q ss_pred HHHcC
Q psy6461 440 ELRAG 444 (703)
Q Consensus 440 ~~~~~ 444 (703)
...+|
T Consensus 547 l~~qG 551 (894)
T COG2909 547 LEAQG 551 (894)
T ss_pred HHHhh
Confidence 44566
No 370
>KOG3364|consensus
Probab=64.54 E-value=54 Score=27.99 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=41.1
Q ss_pred CChhHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH
Q psy6461 530 TKLERARDLFEQCLE-ACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF 588 (703)
Q Consensus 530 ~~~~~A~~~~~~al~-~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 588 (703)
.+..+...+++..++ ..|..- .+....++--..+.|+|++++++....++..|++...
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~r-Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERR-RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccc-hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 345788899999987 455442 1222333333568899999999999999999987543
No 371
>KOG1310|consensus
Probab=63.92 E-value=33 Score=36.20 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=74.6
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChH
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKIT 123 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 123 (703)
+....++..|.++++.-|....+...++..+... +. .|+.-.|......|++.+|-...+|.-+++++...+++.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkR-kW----~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ 462 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKR-KW----RGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL 462 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhh-hc----cccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence 4567889999999999999999999998776532 11 255667888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q psy6461 124 QTRHVFDRALRALPI 138 (703)
Q Consensus 124 ~A~~~~~~al~~~p~ 138 (703)
+|......+....|+
T Consensus 463 eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 463 EALSCHWALQMSFPT 477 (758)
T ss_pred HhhhhHHHHhhcCch
Confidence 999888766666774
No 372
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.86 E-value=1.3e+02 Score=28.19 Aligned_cols=128 Identities=20% Similarity=0.081 Sum_probs=78.3
Q ss_pred HHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhh
Q psy6461 401 FYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKS 480 (703)
Q Consensus 401 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 480 (703)
-+.+.+.+.+|+...+.-++..|.+. .....|-.++.-.|++++|..-++-+-...|++. ..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda----~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t--------------~~ 71 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDA----GGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT--------------VG 71 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccc----cchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc--------------hH
Confidence 34457789999999999899889886 6666677778889999999999999988888751 12
Q ss_pred HHHHHHHHHHHHhcCChhHHHhH-hhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 481 IKLWSLYADLEESFGTFKAYEKG-IALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~e~a-l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
..+|...+..+.....+ |+-. ...|+- .....|..-+......+..+.-+.+..+=+++++.-|..
T Consensus 72 a~lyr~lir~ea~R~ev--fag~~~Pgflg-~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 72 ASLYRHLIRCEAARNEV--FAGGAVPGFLG-GPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HHHHHHHHHHHHHHHHH--hccCCCCCCcC-CCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 45555555554432111 1111 111111 133456555544444443334344555666777766553
No 373
>KOG0276|consensus
Probab=62.69 E-value=71 Score=34.51 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=55.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHH
Q psy6461 144 VWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM 223 (703)
Q Consensus 144 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 223 (703)
.....+.|..++|-.++ +|...|+.. ....++...|+++.|..+..++
T Consensus 616 ~rt~va~Fle~~g~~e~-------AL~~s~D~d-~rFelal~lgrl~iA~~la~e~------------------------ 663 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQ-------ALELSTDPD-QRFELALKLGRLDIAFDLAVEA------------------------ 663 (794)
T ss_pred hhhhHHhHhhhccchHh-------hhhcCCChh-hhhhhhhhcCcHHHHHHHHHhh------------------------
Confidence 34566778777775544 455555442 3456677888888887765443
Q ss_pred HhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
+...-|..||+.....+++..|.+.|.++-.
T Consensus 664 --------------------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 664 --------------------------NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred --------------------------cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 1125699999999999999999999998653
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.46 E-value=30 Score=33.63 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMAR 455 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 455 (703)
.+....+++|...|.+.+|..+.++++..+|-+. ..|..+.+.+...|+--.|.+-|++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e----~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE----QDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh----HHHHHHHHHHHHhccchhhhhHHHH
Confidence 3445557888899999999999999999999876 8899999988888876666555544
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.45 E-value=28 Score=32.13 Aligned_cols=50 Identities=24% Similarity=0.180 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 87 SYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
..+...+..++.++..| ++.++..++..+..+|+.++|+.+.+++....|
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34445555666666666 466666666666667777777777777666666
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.20 E-value=24 Score=22.20 Aligned_cols=21 Identities=14% Similarity=-0.073 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCChHHHHHH
Q psy6461 554 LYLLYAKLEEEHGLARHAMAV 574 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~ 574 (703)
.|..+|-.....|++++|+.+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 455666666667777777777
No 377
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=62.11 E-value=53 Score=32.99 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 605 PKTRQIYERAIESLPEEP-TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 605 ~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
++...++...++..|+-. .+.+|+=+|+++...|.+++.+.+|+.|+... ...-..+-....++..
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ag-AqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAG-AQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHH
Confidence 445566666666777532 35689999999999999999999999998763 2223566666666655
No 378
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.35 E-value=1.2e+02 Score=27.16 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=78.1
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchH----HHHHHHHHHHHHHhcCc
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEM----FEMFNIYIKKAAEIYGI 604 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~ 604 (703)
.++.++|...|...-+..-.+.+....+..+.+....|+...|+..|..+-.-.|-+.. ..+-..|+ +...|.+
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l--LvD~gsy 148 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL--LVDNGSY 148 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH--HhccccH
Confidence 46779999999987666555556678899999999999999999999987665543311 11222222 2335666
Q ss_pred hHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 605 PKTRQIYERAIESLPEEPT-RQMCLKFAEMETKLGEIDRARAIYAHCSQ 652 (703)
Q Consensus 605 ~~A~~~~~~al~~~p~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~a~~ 652 (703)
++.....+.. . .+.++. ...-..++..-++.|++..|+++|+....
T Consensus 149 ~dV~srvepL-a-~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPL-A-GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhc-c-CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6655443322 1 123331 11233444455689999999999998766
No 379
>KOG1166|consensus
Probab=58.91 E-value=1.7e+02 Score=34.39 Aligned_cols=71 Identities=6% Similarity=0.018 Sum_probs=39.8
Q ss_pred CchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcC
Q psy6461 603 GIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 603 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g 674 (703)
.+.+++.+|..+.+..=......++..|+..+.+.+.+.+|..+|+.+++..- .....+-..+..|....|
T Consensus 93 ~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~a-eP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 93 ELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKA-EPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHh
Confidence 44556666666655432223344666777777777777777777777766521 113445555555554443
No 380
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=58.45 E-value=23 Score=21.24 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
..|..+...+.+.|+++.|..+|+...+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3688899999999999999999998665
No 381
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=58.26 E-value=3.7e+02 Score=31.71 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH--HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHH
Q psy6461 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF--TQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLE 332 (703)
Q Consensus 255 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (703)
.....+.....+.|++|...|++.....|+...- +++..+.+-+|+.... .+...+..++..|+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 543 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQ--------------GDPRDFTQALSEFS 543 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhc--------------CChHHHHHHHHHHH
Confidence 4456677888899999999999999998875421 2333344434433210 01122333444444
Q ss_pred HHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcC
Q psy6461 333 DLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVD 383 (703)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~ 383 (703)
. +...|.-+-.+++.+.+++ |++++-++.|.-|++.++
T Consensus 544 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (932)
T PRK13184 544 Y-------------LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYS 583 (932)
T ss_pred H-------------hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 3 3445555555555555554 555556666666655543
No 382
>KOG0686|consensus
Probab=57.77 E-value=2.3e+02 Score=29.22 Aligned_cols=166 Identities=10% Similarity=0.127 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc-cccccHHHHHHHHHhcCChHHHHHHHHHHHh----------hCCCC
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPIT-QHHRVWPLYLSFVKSHAVPETAVRVFRRYLK----------LFPED 175 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----------~~p~~ 175 (703)
....+++.++...|+++.|.+.|.|+-...... +....|......-...|++-.....-.++.+ ..|.-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 567788999999999999999999976654421 1234455555555556666443333333322 22222
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHhhc-ccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhh
Q psy6461 176 AEDYIEYL-SSIERLDEAAVKLAYIVN-KESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253 (703)
Q Consensus 176 ~~~~~~~~-~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (703)
...+.++. ...+.|+.|.+.|=.+.. .-.|..--.++...++-.++.+-.-.+... ....+-......+-+..+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~L---k~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDL---KLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHH---HHHHHcchhhhhHHhcChH
Confidence 33333333 345678877777644431 111212223344445544443321111110 0011112233444455567
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHH
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEE 277 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~ 277 (703)
+|..++.+|. ++|..+.+++++
T Consensus 308 lr~il~~fy~--sky~~cl~~L~~ 329 (466)
T KOG0686|consen 308 LREILFKFYS--SKYASCLELLRE 329 (466)
T ss_pred HHHHHHHHhh--hhHHHHHHHHHH
Confidence 8888888885 577777777765
No 383
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=57.42 E-value=21 Score=21.35 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 433 WCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 433 ~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
|..+...+.+.|++++|.++|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677777888888888888887664
No 384
>KOG4814|consensus
Probab=56.77 E-value=3.1e+02 Score=30.24 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchH----HHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEM----FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCL 628 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 628 (703)
.+|..-+..+ +..+|..+.+.|+..+...|.|.. .-+++...-.+.++.+.|+|.++++.|-+.+|.++..+..+
T Consensus 356 iLWn~A~~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKKLF-KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3555544443 456777777777777776665532 12333444444556677888888888888777766433332
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 629 KFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.- .....|+-++|.....+...+
T Consensus 435 ~~--~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQ--SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HH--HHHHhcchHHHHHHHHHHHhh
Confidence 22 223456677777766665544
No 385
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=56.67 E-value=17 Score=23.17 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhc
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATL 420 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 420 (703)
++..+|.+-...++++.|..=|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444445555555555554443
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.37 E-value=86 Score=23.92 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=30.3
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHH---HHHHHcCChHHHHHHHH
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYA---KLEEEHGLARHAMAVYE 576 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a---~~~~~~g~~~~A~~~~~ 576 (703)
.|..++.++|+..+.++++..++. +.-|..+| ..+...|++.++++.--
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~--~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDR--EDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788888888888887775 33444444 34555666665554433
No 387
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.27 E-value=37 Score=35.32 Aligned_cols=130 Identities=10% Similarity=0.030 Sum_probs=60.0
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.|++-.|-.....+|...|.++.+-......... .|.++.+.+...-+=+........-.-..+-....|+.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~--------lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSH--------LGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHH--------hhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 4666666666666666666666655544443322 25555555555444433322222222222333445566
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 182 (703)
+.|...-+-.|.-.- ..+.+....+---...|-++++.-.+++.+.++|....-|+.+
T Consensus 374 ~~a~s~a~~~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 374 REALSTAEMMLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHHHHHHHhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 665555554443211 1122222111111223445666666666666666544434433
No 388
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=55.23 E-value=29 Score=22.13 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhh
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQT 281 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 281 (703)
+++..||++-...+++++|..=|++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999998874
No 389
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.95 E-value=72 Score=28.83 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 46 KAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 46 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
.+.|..+++..-+..|....+....=.....+..-.|..+|.+++|.+++++... +|++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 4556666665555555433333222222222223334445555555555555555 5544444
No 390
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.26 E-value=75 Score=25.32 Aligned_cols=84 Identities=14% Similarity=0.208 Sum_probs=52.0
Q ss_pred CchHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHh----CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 510 PYIFDIWNTYLTKFLSRYGG-TKLERARDLFEQCLEA----CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 510 ~~~~~~~~~y~~~~~~~~~~-~~~~~A~~~~~~al~~----~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
|....-|..|-....+.+.. ...+.-.+.+++-++. +.. .++-....++-++.+.|+.+.|.+-|+.--..+|.
T Consensus 26 pKslY~w~gYq~tvyEy~K~~es~e~Q~~~le~~~ek~~ak~~~-vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 26 PKSLYQWEGYQDTVYEYFKGDESKEAQTAALEKYLEKIGAKNGA-VPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred CccccccCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCC-CCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 33444566655554544432 2223333334444432 211 12347888999999999999999999998899998
Q ss_pred chHHHHHHHHHHHHHH
Q psy6461 585 EEMFEMFNIYIKKAAE 600 (703)
Q Consensus 585 ~~~~~~~~~~~~~~~~ 600 (703)
+. .|++|..+
T Consensus 105 S~------~fmDFLmk 114 (121)
T COG4259 105 SG------VFMDFLMK 114 (121)
T ss_pred ch------hHHHHHHH
Confidence 73 45677655
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.92 E-value=43 Score=30.89 Aligned_cols=51 Identities=24% Similarity=0.167 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
.+..++..++.++..|+ +.++..++.++...|+.++|.....++...+|.+
T Consensus 127 l~~~~~~a~~~l~~~P~---~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD---PNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 35667777888888897 5789999999999999999999999999999943
No 392
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=52.75 E-value=64 Score=32.44 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
--.++...++...++..|.. .-++..|+.+++++-..|.++.++.+|+.|+.....
T Consensus 117 cp~eei~~~L~~li~~IP~A-~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 117 CPKEEILATLSDLIKNIPDA-KKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred CCHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 34567777788777776654 456678888888888888888888888888876544
No 393
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=52.13 E-value=3.5e+02 Score=29.51 Aligned_cols=128 Identities=9% Similarity=-0.099 Sum_probs=83.5
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh-
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI- 122 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~- 122 (703)
+...-+...+.-.+...|.++++.+.+. . ..+. .+.+....+......++..+|.++.....++..+...|..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~-l--si~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~ 118 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAF-L--SILL---APLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQF 118 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHH-H--Hhhc---cccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHH
Confidence 3344456666666778888888866653 1 1111 1235556778888889999999998888888877766654
Q ss_pred HHHHHHHHHHHHhCCcccccccHHH------HHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPL------YLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~------~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
..+...-+.+.+..|.+ ...... .+++....++..++...+.++....|.+....
T Consensus 119 ~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 119 LALADISEIAEWLSPDN--AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred HHHHHHHHHHHhcCcch--HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 44555555577777742 222222 35555566777888888888888888875543
No 394
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.56 E-value=2.5e+02 Score=28.21 Aligned_cols=90 Identities=13% Similarity=0.119 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC-cccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP-ITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
-++.....+|+-.....| ||-+-++-+-...+....+.+..+.+..+. .| -+.....|..-+.++.+.|..++|...
T Consensus 310 tDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 310 TDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 345566666665555555 444444444444444444555555554433 22 112344555556666666777777777
Q ss_pred HHHHHhhCCCCHH
Q psy6461 165 FRRYLKLFPEDAE 177 (703)
Q Consensus 165 ~~~~l~~~p~~~~ 177 (703)
|++++.+-++..+
T Consensus 388 ydrAi~La~~~ae 400 (415)
T COG4941 388 YDRAIALARNAAE 400 (415)
T ss_pred HHHHHHhcCChHH
Confidence 7777666655544
No 395
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.32 E-value=20 Score=26.99 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=9.2
Q ss_pred cCchHHHHHHHHHHHh
Q psy6461 602 YGIPKTRQIYERAIES 617 (703)
Q Consensus 602 ~~~~~A~~~~~~al~~ 617 (703)
|++++|..+|.++++.
T Consensus 20 gny~eA~~lY~~ale~ 35 (75)
T cd02680 20 GNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4556666666665554
No 396
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=50.31 E-value=1.5e+02 Score=30.74 Aligned_cols=47 Identities=9% Similarity=-0.095 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDR 131 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 131 (703)
...+-+|..+++.+++..|.|+.+-+.++++|...|-.+.|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 35577889999999999999999999999999999999999999864
No 397
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=49.74 E-value=65 Score=31.21 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=43.7
Q ss_pred HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 600 EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+.++++.|....++.+..+|+++. -+..-+.++.+.|...-|+.-++..++.+|.+
T Consensus 193 ~e~~~~~al~~~~r~l~l~P~dp~--eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 193 RELQWELALRVAERLLDLNPEDPY--EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HhhchHHHHHHHHHHHhhCCCChh--hccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 456788888888888888888775 46667777888888888888888888877665
No 398
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.90 E-value=1.2e+02 Score=29.41 Aligned_cols=85 Identities=18% Similarity=0.042 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC--cchHHHHHHHHHHHHHHcCCH
Q psy6461 369 LDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK--VEDLATVWCEWAELELRAGQE 446 (703)
Q Consensus 369 ~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 446 (703)
...++.+++|+..+.......-...+-..+|..|...|++++|..+|+.+....... ......+...+.....+.|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 355666677666643322222245566778999999999999999999996543211 111234444555555667777
Q ss_pred HHHHHHH
Q psy6461 447 EAALRLM 453 (703)
Q Consensus 447 ~~A~~~~ 453 (703)
+....+.
T Consensus 235 ~~~l~~~ 241 (247)
T PF11817_consen 235 EDYLTTS 241 (247)
T ss_pred HHHHHHH
Confidence 7665543
No 399
>KOG1550|consensus
Probab=47.86 E-value=4.2e+02 Score=29.26 Aligned_cols=248 Identities=18% Similarity=0.099 Sum_probs=132.9
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC-----ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND-----QLEDARLIFDKATLVPYTKVEDLATVWCEWAELE 440 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 440 (703)
.|++.|+..|+.+.......... ..+.....+|.+|.... +.+.|..+|.++-..... ...+.++.++
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~-~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~------~a~~~lg~~~ 335 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATK-GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP------DAQYLLGVLY 335 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh-cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc------hHHHHHHHHH
Confidence 46777888887776510000000 01224566788887532 678899999999887433 3455566655
Q ss_pred HHc---CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHH
Q psy6461 441 LRA---GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWN 517 (703)
Q Consensus 441 ~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~ 517 (703)
... .+...|.++|..|....- .......+.++..-.-+
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~-------------------~~A~~~la~~y~~G~gv-------------------- 376 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH-------------------ILAIYRLALCYELGLGV-------------------- 376 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC-------------------hHHHHHHHHHHHhCCCc--------------------
Confidence 443 357789999999887653 23333444443322111
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHH
Q psy6461 518 TYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKK 597 (703)
Q Consensus 518 ~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 597 (703)
..+...|...|.++.+..+.. ..|..-+..+...+.++.+...+......--... ..-..++..
T Consensus 377 -----------~r~~~~A~~~~k~aA~~g~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~--q~~a~~l~~ 440 (552)
T KOG1550|consen 377 -----------ERNLELAFAYYKKAAEKGNPS---AAYLLGAFYEYGVGRYDTALALYLYLAELGYEVA--QSNAAYLLD 440 (552)
T ss_pred -----------CCCHHHHHHHHHHHHHccChh---hHHHHHHHHHHccccccHHHHHHHHHHHhhhhHH--hhHHHHHHH
Confidence 234689999999999987432 1232222223333666665554443332221111 111111111
Q ss_pred HH----H----hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc---C-CHHHHHHHHHHHhcccCCCCChHhHHH
Q psy6461 598 AA----E----IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL---G-EIDRARAIYAHCSQICDPRVTAGFWAA 665 (703)
Q Consensus 598 ~~----~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~---g-~~~~A~~~~~~a~~~~~~~~~~~~~~~ 665 (703)
.. . ..+...+..++.++-..... . ..+.+++++..- + +++.|...|.+|.+.. ...+|+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~--~--a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nl 512 (552)
T KOG1550|consen 441 QSEEDLFSRGVISTLERAFSLYSRAAAQGNA--D--AILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNL 512 (552)
T ss_pred hccccccccccccchhHHHHHHHHHHhccCH--H--HHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhh
Confidence 11 0 12456666777776654332 2 344444444332 3 4889999999998774 3667776
Q ss_pred HHHHHHHcCCH--HHHHHHH
Q psy6461 666 WKSFEITHGNE--DTMREML 683 (703)
Q Consensus 666 ~~~~~~~~g~~--~~~~~~~ 683 (703)
=...|.-.|-. ..|.+.+
T Consensus 513 g~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 513 GYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred hhHHhcCcCcchhHHHHHHH
Confidence 55555544543 4444444
No 400
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.68 E-value=2.6e+02 Score=26.77 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhcc-----CCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHhc
Q psy6461 408 LEDARLIFDKATLV-----PYTKVEDLATVWCEWAELELR-AGQEEAALRLMARATA 458 (703)
Q Consensus 408 ~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~ 458 (703)
.++|...|++|+.. +|.+| ..-.+.+.++.++.. .|+.++|..+.++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p-~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHP-LRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSH-HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCc-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46788888887654 56665 333667777777655 7899998887777653
No 401
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=47.33 E-value=3.2e+02 Score=27.65 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHH
Q psy6461 142 HRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAY 198 (703)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~ 198 (703)
...|..-+..+...+++++-.+.-.. +..|-..+.++..+...|+..+|.+...+
T Consensus 208 krfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 208 KRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 35555555555566666544433221 34455555555555555665555555433
No 402
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.39 E-value=27 Score=26.31 Aligned_cols=34 Identities=15% Similarity=0.442 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
+++|..++.+|+..+ ..|++++|+.+|..|++.+
T Consensus 3 l~kai~Lv~~A~~eD-----------------~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 3 LERAHFLVTQAFDED-----------------EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHHhh-----------------HhhhHHHHHHHHHHHHHHH
Confidence 456677777775442 4789999999999998865
No 403
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.22 E-value=1.2e+02 Score=23.20 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=10.2
Q ss_pred CchHHHHHHHHHHHhCCCcc
Q psy6461 603 GIPKTRQIYERAIESLPEEP 622 (703)
Q Consensus 603 ~~~~A~~~~~~al~~~p~~~ 622 (703)
+..+|...|.++|+..++.+
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~ 40 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDRE 40 (80)
T ss_pred hHHHHHHHHHHHHhhcCChH
Confidence 33445555555555555443
No 404
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.84 E-value=3.2e+02 Score=26.96 Aligned_cols=15 Identities=7% Similarity=0.147 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHhcc
Q psy6461 639 EIDRARAIYAHCSQI 653 (703)
Q Consensus 639 ~~~~A~~~~~~a~~~ 653 (703)
+...|..++.++...
T Consensus 252 ~~~~a~~~~~~~~~~ 266 (292)
T COG0790 252 DKKQALEWLQKACEL 266 (292)
T ss_pred CHHHHHHHHHHHHHc
Confidence 556666666666554
No 405
>KOG1166|consensus
Probab=44.71 E-value=2.8e+02 Score=32.68 Aligned_cols=129 Identities=16% Similarity=0.284 Sum_probs=83.0
Q ss_pred CchHHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q psy6461 510 PYIFDIWNTYLTKFLSRYGGTK--LERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVL 583 (703)
Q Consensus 510 ~~~~~~~~~y~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 583 (703)
.+....|..|+.+....+..++ ....+.++++++...++.- ...+...|.. +.....+.+++.+|..+....-
T Consensus 31 ~DPl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgI 109 (974)
T KOG1166|consen 31 NDPLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKGI 109 (974)
T ss_pred CCchhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhccc
Confidence 4567889999988777764443 4667777887777544320 0222223222 2234567888899888876554
Q ss_pred cchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCH
Q psy6461 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEI 640 (703)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 640 (703)
......+|..|...+.+.+.+.+|..+|+.+++..-. |...+...+..+..+.|.-
T Consensus 110 g~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~ae-P~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 110 GTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAE-PLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhh
Confidence 4333567778888888888899999999999986321 1233566666666665543
No 406
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=44.56 E-value=2.2e+02 Score=24.96 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=41.1
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
...++.+..++...--..|+. +.+-+.-+.+.+..|++.+|..+|.......+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~--~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNL--KELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCc--cccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 345688888888887888887 456666666777889999999999887776554
No 407
>KOG2114|consensus
Probab=44.47 E-value=5.4e+02 Score=29.49 Aligned_cols=56 Identities=9% Similarity=0.017 Sum_probs=40.3
Q ss_pred HHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 401 FYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 401 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
.+.+++-++-|+.+-+.- -..++...++...||..+.+.|++++|...|-+++..-
T Consensus 343 iL~kK~ly~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 344556666666665431 12224457899999999999999999999999998753
No 408
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=43.71 E-value=2.1e+02 Score=24.47 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
+........++.++..++.++.+...++..+.... .......+.. .+. .--....++++.+.+-++.+.-+|
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~---~yd~~~~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN----KSN---HYDIEKVGKLCEKAKLYEEAVELY 92 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh----ccc---cCCHHHHHHHHHHcCcHHHHHHHH
Confidence 45667778888888877778888888888886653 2233333331 110 111334455555555555555555
Q ss_pred HH
Q psy6461 166 RR 167 (703)
Q Consensus 166 ~~ 167 (703)
.+
T Consensus 93 ~k 94 (140)
T smart00299 93 KK 94 (140)
T ss_pred Hh
Confidence 44
No 409
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=43.36 E-value=2.9e+02 Score=30.31 Aligned_cols=92 Identities=11% Similarity=0.089 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhccc-CC---CCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 46 KAIINTIYERSLKELPGSY-----KLWYNYLKLRRKQVKG-KV---ITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 46 ~~~a~~~~e~al~~~P~~~-----~~w~~~~~~~~~~~~~-~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
.+.+.+.....-+.+|.++ +.|....+++...... .. ...|++++|....++.....+....+. ..+.++
T Consensus 274 qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~~lpi~-~~~~ll 352 (547)
T PF14929_consen 274 QEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTCALPIR-LRAHLL 352 (547)
T ss_pred HHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCccchHH-HHHHHH
Confidence 3334444433335555555 7776666665422111 11 234677777776666443322211111 122222
Q ss_pred Hh--ccChHHHHHHHHHHHHhCCc
Q psy6461 117 MD--QHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 117 ~~--~~~~~~A~~~~~~al~~~p~ 138 (703)
.. ..+.+....+|+++++.+|.
T Consensus 353 e~~d~~~~~~l~~~~e~~~~~~P~ 376 (547)
T PF14929_consen 353 EYFDQNNSSVLSSCLEDCLKKDPT 376 (547)
T ss_pred HHhCcccHHHHHHHHHHHhcCCCc
Confidence 22 23566777888888888885
No 410
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=43.25 E-value=97 Score=30.08 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=44.1
Q ss_pred HHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 116 LMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 116 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+...++.+.|.++-++.+..+|. .+.-|.--+-+|...|-..-|++.+...++..|+...
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~--dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPE--DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCC--ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 34457788888888888888884 3555666677777777778888888888888887764
No 411
>PRK12798 chemotaxis protein; Reviewed
Probab=42.26 E-value=4.2e+02 Score=27.64 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=114.4
Q ss_pred HhcCChhHHHhHhhcCCCC-c---hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh-CCCcchHHHHHHHHHH-HHHc
Q psy6461 492 ESFGTFKAYEKGIALFKWP-Y---IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA-CPPRYAKTLYLLYAKL-EEEH 565 (703)
Q Consensus 492 ~~~~~~~~~e~al~~~~~~-~---~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~a~~-~~~~ 565 (703)
..-|+....+..++.-..+ . -...-..|+ .|+..++++.+...--. .|.... .++.++.- ....
T Consensus 92 lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~--------~Gr~~~a~~~La~i~~~~l~~~lg--~~laLv~a~l~~~ 161 (421)
T PRK12798 92 LSGGNPATLRKLLARDKLGNFDQRLADGALAYL--------SGRGREARKLLAGVAPEYLPAELG--AYLALVQGNLMVA 161 (421)
T ss_pred hcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHH--------cCCHHHHHHHhhcCChhhcCchhh--hHHHHHHHHHhcc
Confidence 4556776677766644322 1 223333343 47778888877664332 233332 33333332 2345
Q ss_pred CChHHHHHHHHHHhhccCcchHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHcCCHHHH
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFE-MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT-RQMCLKFAEMETKLGEIDRA 643 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~a~~~~~~g~~~~A 643 (703)
.++.+|++.|+.+.-..|.....+ ...--+....+.|+.++...+-.+-+..+..++. .+++-.++....+.++-..
T Consensus 162 ~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~- 240 (421)
T PRK12798 162 TDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR- 240 (421)
T ss_pred cCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-
Confidence 689999999999998888752111 1111222233468888888888888888877764 2355555555555543221
Q ss_pred HHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 644 RAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 644 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
...+...++..+++....+|...++--...|..+-+.-+.+++..+.
T Consensus 241 ~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 241 DARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 13356666666666678888888888888888888887777766665
No 412
>KOG4014|consensus
Probab=42.20 E-value=2.7e+02 Score=25.33 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH-cC---CHHHHHHHHHHHHHHHHHhh---hccccc
Q psy6461 638 GEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT-HG---NEDTMREMLRIKRSVQAQYN---TQVLFT 700 (703)
Q Consensus 638 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~g---~~~~~~~~~~~~~~~~~~~~---~~~~~~ 700 (703)
.+.++|.+.--+|.++. ++....+..+.... .| +.+.|++....+..++.+.. |..+|+
T Consensus 182 kDMdka~qfa~kACel~----~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k~~~~lgF~ 247 (248)
T KOG4014|consen 182 KDMDKALQFAIKACELD----IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRKNDTNLGFT 247 (248)
T ss_pred HhHHHHHHHHHHHHhcC----ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 45677777777777663 34444554444432 23 46667766655555544433 344554
No 413
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=41.95 E-value=3.1e+02 Score=28.95 Aligned_cols=102 Identities=9% Similarity=0.074 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc--ccccHHHHHHHHHhcCChHHHHHHHHHHH--hhCCCCHH-
Q psy6461 103 HKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ--HHRVWPLYLSFVKSHAVPETAVRVFRRYL--KLFPEDAE- 177 (703)
Q Consensus 103 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~p~~~~- 177 (703)
|-++--.-.+++......+++.+..++-+--. .|.+. .+.....+++.+.+.|..+.++.+++.=+ .++|++..
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~-s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRH-SPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHc-CcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 44443333345555555667888888887544 55332 24445677888889999999999998654 45777765
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhhccccc
Q psy6461 178 -DYIEYLSSIERLDEAAVKLAYIVNKESF 205 (703)
Q Consensus 178 -~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 205 (703)
.++..+...|++..|.++...++..+.|
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~ 170 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEF 170 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhcc
Confidence 4678889999999999999988865444
No 414
>KOG4521|consensus
Probab=41.08 E-value=7.1e+02 Score=29.87 Aligned_cols=45 Identities=4% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHH-HHHHHHHHH
Q psy6461 646 IYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREM-LRIKRSVQA 691 (703)
Q Consensus 646 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 691 (703)
+.+++-...+.+ ....++.+..|+..-++..+|-.+ ++-++++++
T Consensus 1089 l~esaaRs~~~m-k~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1089 LRESAARSSPSM-KKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred HHHHHhhcCccc-cccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 445544443333 567888888888888887777554 666666654
No 415
>KOG2581|consensus
Probab=40.27 E-value=4.4e+02 Score=27.32 Aligned_cols=139 Identities=13% Similarity=0.013 Sum_probs=81.3
Q ss_pred HHHHHHcCChHHHHHHHHHhhcc-CCCCcch----HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC-Ccccccchhh
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLV-PYTKVED----LATVWCEWAELELRAGQEEAALRLMARATATPAR-PVAYHDEAET 472 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~ 472 (703)
.-+++.++++++|..+-+..+.. .-.+... ...+|+-+...+-..|+...-+..+...+..-.- +.++.
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~----- 207 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEG----- 207 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchh-----
Confidence 44455678888887776654332 1122111 1467887887787888888877777665532211 00000
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhc--CCCCchHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhCCCc
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIAL--FKWPYIFDIWNTYLTKFLSRY-GGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~--~~~~~~~~~~~~y~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~ 549 (703)
...+.+...+.+...+.++--++.++. +|....-.-|..|........ -..++..|.+.|-+|+...|++
T Consensus 208 -------qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 208 -------QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred -------HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 133444444555554444444555554 344445557888776443332 2467899999999999999976
No 416
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.20 E-value=1.6e+02 Score=28.64 Aligned_cols=102 Identities=11% Similarity=0.054 Sum_probs=63.7
Q ss_pred eccCCCchhhHHHHhcCCCChHHHHHHHHHhh---cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchh
Q psy6461 11 TTENEEDLPYEEEILRNPFSVKHWLRYIEHKK---NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPS 87 (703)
Q Consensus 11 ~~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~---~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~ 87 (703)
+.++++-.-.+.+++.||.++..|.-=--... ...+.+=..+-++.+..+|.+...|- |-++.+..+.. -.+..+
T Consensus 88 ~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~-YR~~vl~~ie~-~~N~S~ 165 (328)
T COG5536 88 HLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWS-YRRWVLRTIED-LFNFSD 165 (328)
T ss_pred hhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceee-eEeeeeecchh-hccchh
Confidence 34455556678889999999999976332222 45577777888999999999999882 32222211110 011223
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy6461 88 YEDVNNTFERSLVFMHKMPRIWLDYGR 114 (703)
Q Consensus 88 ~~~A~~~~~~al~~~p~~~~~~~~~~~ 114 (703)
+..-.+.=-.++..++-|+++|.....
T Consensus 166 ~k~e~eytt~~I~tdi~N~SaW~~r~~ 192 (328)
T COG5536 166 LKHELEYTTSLIETDIYNNSAWHHRYI 192 (328)
T ss_pred HHHHHHhHHHHHhhCCCChHHHHHHHH
Confidence 334444445566678889999987633
No 417
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=40.02 E-value=1.3e+02 Score=29.44 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
|+..|.+|+...|+++. .+..+|-+....|+.-.|.=.|-|++-.
T Consensus 1 A~~~Y~~A~~l~P~~G~--p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN--PYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBSH--HHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCCC--cccchhhhhccccchHHHHHHHHHHHhc
Confidence 34455555555555554 4555555555555555555555555543
No 418
>KOG1811|consensus
Probab=39.89 E-value=5.2e+02 Score=28.18 Aligned_cols=72 Identities=10% Similarity=0.102 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccc
Q psy6461 626 MCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLFT 700 (703)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (703)
+|..|+....+.|++..||.-|.+|.+....+.+..++.-.-. ..-|.+.+...|.+.-.++.++-+| ++|+
T Consensus 589 aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~--ieGgpp~dVq~Vrem~dhlak~apt-ildd 660 (1141)
T KOG1811|consen 589 AWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL--IEGGPPRDVQDVREMLDHLAKPAPT-ILDD 660 (1141)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh--hcCCCcchHHHHHHHHHHhccCCcc-cccc
Confidence 8999999999999999999999999998555544444433221 1225677777777767777766563 3443
No 419
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=39.70 E-value=2.3e+02 Score=23.77 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=55.2
Q ss_pred HHHHHHHHH--HHcCChHHHHHHHHHHhhcc---Ccc-----hHHHHH--HHHHHHHHHhcCchHHHHHHHHHHHhCC--
Q psy6461 554 LYLLYAKLE--EEHGLARHAMAVYERATGAV---LPE-----EMFEMF--NIYIKKAAEIYGIPKTRQIYERAIESLP-- 619 (703)
Q Consensus 554 ~~~~~a~~~--~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~--~~~~~~~~~~~~~~~A~~~~~~al~~~p-- 619 (703)
.|+.++.-+ ...|.+++|..-+.+|++.. |.. +.+..+ ........++|+++++..--+++|..+.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 444444443 34567777777777776542 321 112111 1233334456777777777676665421
Q ss_pred ---CcchHHHHH----HHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 620 ---EEPTRQMCL----KFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 620 ---~~~~~~~~~----~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
+...-..|+ ..+..+...|..++|.+.|+.+.++.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 111222554 45666677899999999999988763
No 420
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=39.19 E-value=2.2e+02 Score=24.42 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=36.0
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 595 IKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
++..-..|.-|+--+++....+..-. .+++.+..+..+.+.|+..+|..++.+|.+.
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~~~--~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNEEI--NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH-----S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34444456666666666666642222 2448888899999999999999999888776
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.60 E-value=3.8e+02 Score=26.10 Aligned_cols=30 Identities=10% Similarity=-0.190 Sum_probs=23.6
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHh
Q psy6461 389 GKLHTLWIEFGKFYEVNDQLEDARLIFDKA 418 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 418 (703)
...++++..+|..+++.|++.+|+..|-.+
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 356899999999999999999999888654
No 422
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=37.85 E-value=3.6e+02 Score=27.65 Aligned_cols=144 Identities=8% Similarity=0.095 Sum_probs=70.5
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHH
Q psy6461 17 DLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTF 95 (703)
Q Consensus 17 ~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 95 (703)
...+|++|+.++.. .-..++.... ++ .....++..+.+.||+..++|..+..++.. +....+..+......
T Consensus 79 s~~~erILed~aDe--Kl~~l~~~Lk~~~--~~~~~ll~~arq~FpD~SDl~~aLreLl~r----~kL~~~~~~~le~al 150 (372)
T PRK15338 79 SDSFERVLEDEALP--KAKQILKLISVHG--GALEEFLRQARKLFPDPSDLVLVLRELLRR----KQLEEIVRKKLESLL 150 (372)
T ss_pred chHHHHHhccchHH--HHHHHHHHHHhcC--CCHHHHHHHHHHhCCCHHHHHHHHHHHHhC----ccCCHHHHHHHHHHH
Confidence 34667777655432 1122222222 22 223378888999999999999888776542 111112222333333
Q ss_pred HHHHHh-cCCCHHHHHHH---HHHHHhccCh--HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHH
Q psy6461 96 ERSLVF-MHKMPRIWLDY---GRFLMDQHKI--TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 96 ~~al~~-~p~~~~~~~~~---~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 169 (703)
+...+. .|+...+=++- +..+...++. ..-|.+|...+..+. ....+|..+..-+ ..++.+.++..+.++|
T Consensus 151 ~~Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR~lYR~Fl~~d~--~~~~iY~~Wieey-g~~~R~~il~Fl~~AL 227 (372)
T PRK15338 151 KHVEEETDPKTLKAGINCALKARLFGKALSLKPGLLRASYRQFLQSES--HEVEIYSDWIASY-GYQRRLVVLDFIEGSL 227 (372)
T ss_pred HHHHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHHHHHHHHHhccC--cHHHHHHHHHHHh-CccHHHHHHHHHHHHH
Confidence 333333 23233222222 2222333444 666777777777554 2233444433332 2333466666667766
Q ss_pred hh
Q psy6461 170 KL 171 (703)
Q Consensus 170 ~~ 171 (703)
..
T Consensus 228 ~~ 229 (372)
T PRK15338 228 LT 229 (372)
T ss_pred Hh
Confidence 43
No 423
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=36.11 E-value=6.2e+02 Score=27.75 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=10.2
Q ss_pred CChhHHHHHHHHHHHhCCCc
Q psy6461 530 TKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~ 549 (703)
++..++....++++...|.+
T Consensus 156 ~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 156 GRTAEAELALERAVDLLPKY 175 (620)
T ss_pred ccHHHHHHHHHHHHHhhhhh
Confidence 34455555555555555544
No 424
>KOG4014|consensus
Probab=35.19 E-value=3.5e+02 Score=24.63 Aligned_cols=192 Identities=15% Similarity=0.081 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHH-HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhcCCCCCc
Q psy6461 391 LHTLWIEFGKFYE-VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR-----AGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 391 ~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
.|+.-..++.+++ -++++++|..+|+.-...+ ..+ .-.+.|+..++. .+++..|.+.|..+-..+.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~----kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~--- 104 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYP----KSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI--- 104 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCc----HHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC---
Confidence 3556677788877 5678999999999865542 222 456667765543 4578889988888766442
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
++.....+.+ .-.|+. .+-.+-+.+.|+..+.+++.
T Consensus 105 ----------------~~aC~~~gLl-~~~g~~---------------------------~r~~dpd~~Ka~~y~traCd 140 (248)
T KOG4014|consen 105 ----------------PQACRYLGLL-HWNGEK---------------------------DRKADPDSEKAERYMTRACD 140 (248)
T ss_pred ----------------HHHHhhhhhh-hccCcC---------------------------CccCCCCcHHHHHHHHHhcc
Confidence 3333333322 222222 00012235899999999998
Q ss_pred hCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 624 (703)
..-.. +...++.+++ |.-++ +....|....+ +-.. ...+-.++++.|.+.--+|-+..- +.
T Consensus 141 l~~~~----aCf~LS~m~~--~g~~k-------~~t~ap~~g~p-~~~~--~~~~~~kDMdka~qfa~kACel~~--~~- 201 (248)
T KOG4014|consen 141 LEDGE----ACFLLSTMYM--GGKEK-------FKTNAPGEGKP-LDRA--ELGSLSKDMDKALQFAIKACELDI--PQ- 201 (248)
T ss_pred CCCch----HHHHHHHHHh--ccchh-------hcccCCCCCCC-cchh--hhhhhhHhHHHHHHHHHHHHhcCC--hH-
Confidence 86543 3444444433 23222 33334422111 0011 111224688888888888877642 22
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHhccc
Q psy6461 625 QMCLKFAEMETKL----GEIDRARAIYAHCSQIC 654 (703)
Q Consensus 625 ~~~~~~a~~~~~~----g~~~~A~~~~~~a~~~~ 654 (703)
..-...+++..- .+-++|...=++|.++.
T Consensus 202 -aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 202 -ACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred -HHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 455556666542 45778888888887763
No 425
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=4.7e+02 Score=25.68 Aligned_cols=143 Identities=11% Similarity=0.112 Sum_probs=85.6
Q ss_pred CCCCccceeeeccCCCc--hhhHHHHhcCCCChHHHHHHHHHhh--cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6461 1 PESTGFTGIYTTENEED--LPYEEEILRNPFSVKHWLRYIEHKK--NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRK 76 (703)
Q Consensus 1 ~~~~~~~~~~~~~~~~~--~~~e~~l~~~P~~~~~w~~~~~~~~--~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~ 76 (703)
|+.+|+..+-++....+ .++++++- -.++.-.....+... ..-..+|.+.=...+..+|.-..+|----.....
T Consensus 1 ~~~~~~~r~~~~~~q~~l~~~l~ri~~--~e~y~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h 78 (328)
T COG5536 1 PEDLDLRRVKPLPIQFDLLSELQRILY--TESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKH 78 (328)
T ss_pred CccccchhccccccchhhhhHHHHHHh--hhccchHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhh
Confidence 56677777766654333 35555552 334444444444444 3345677888888888899999999544333221
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--cChHHHHHHHHHHHHhCCcccccccHHH
Q psy6461 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ--HKITQTRHVFDRALRALPITQHHRVWPL 147 (703)
Q Consensus 77 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~~ 147 (703)
..........-++.=....+.+++.+|++..+|..---++... .+...-..+..+.|..+|. +-..|.-
T Consensus 79 ~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~Dsr--NyH~W~Y 149 (328)
T COG5536 79 VQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSR--NYHVWSY 149 (328)
T ss_pred hhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccccc--ccceeee
Confidence 0000000011234456678889999999999997766665443 4556666677778877874 4555543
No 426
>KOG1497|consensus
Probab=33.57 E-value=3.4e+02 Score=27.08 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-CC--CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVP-YT--KVEDLATVWCEWAELELRAGQEEAALRLMARAT 457 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 457 (703)
...+.+.+|.+|++.+++..|-.++.-.-... +. +.+-...+++..+++|+..++..+|.....|+.
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45678899999999999999999887432211 11 112234678899999999999999988887764
No 427
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.43 E-value=2.5e+02 Score=22.49 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 60 LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFM-HKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 60 ~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
-|.+.=-|..|-....+-.++..+.-.+.....+.++++-..+ +--|..+-.++.++.+.|+.+.+.+-|+.--...|.
T Consensus 25 gpKslY~w~gYq~tvyEy~K~~es~e~Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 25 GPKSLYQWEGYQDTVYEYFKGDESKEAQTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred CCccccccCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 5555555555433222222221111123333444555544442 334566666777777777777777777776666774
No 428
>KOG0687|consensus
Probab=33.07 E-value=5.2e+02 Score=25.99 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHhCchHHHHHHHHHHHhh
Q psy6461 251 LGHLWNSLADYYIRSGLFERARDIYEEAIQT 281 (703)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 281 (703)
..++|...+..|.+-|+-+.|.+.+.+....
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4578999999999999999999988886664
No 429
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.07 E-value=61 Score=23.84 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=12.6
Q ss_pred HcCCHHHHHHHHHHHhcc
Q psy6461 636 KLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 636 ~~g~~~~A~~~~~~a~~~ 653 (703)
+.|++++|+..|..|++.
T Consensus 17 ~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 467777777777777664
No 430
>KOG1811|consensus
Probab=31.93 E-value=5.1e+02 Score=28.24 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q psy6461 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
..+..|..+..++- + .. ..+|..++...++.+++..|+.-|+++++....++
T Consensus 570 ErYqlaV~mckKc~-i--D~----f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedi 621 (1141)
T KOG1811|consen 570 ERYQLAVEMCKKCG-I--DT----FGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDI 621 (1141)
T ss_pred HHHHHHHHHHhhcC-C--Cc----ccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCcc
Confidence 34555666655531 1 11 16799999999999999999999999999886664
No 431
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=31.69 E-value=1.5e+02 Score=25.16 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=25.6
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRR 75 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~ 75 (703)
-+.+.|..+|+..++.+|+...+.+.++.-..
T Consensus 90 le~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 90 LEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp S-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 56688999999999999999999999987643
No 432
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=31.47 E-value=3.5e+02 Score=27.32 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLS 184 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 184 (703)
+-..|..-+..+...+++++-.+.... +.- |-.|.-+...+...|+..+|.....+ .|. +.-+.++.
T Consensus 207 dkrfw~lki~aLa~~~~w~eL~~fa~s--kKs-----PIGyepFv~~~~~~~~~~eA~~yI~k----~~~--~~rv~~y~ 273 (319)
T PF04840_consen 207 DKRFWWLKIKALAENKDWDELEKFAKS--KKS-----PIGYEPFVEACLKYGNKKEASKYIPK----IPD--EERVEMYL 273 (319)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhC--CCC-----CCChHHHHHHHHHCCCHHHHHHHHHh----CCh--HHHHHHHH
Confidence 458898999999999999988775432 333 45588888888899999988887777 333 46788889
Q ss_pred hcCCHHHHHHHHHH
Q psy6461 185 SIERLDEAAVKLAY 198 (703)
Q Consensus 185 ~~~~~~~A~~~~~~ 198 (703)
..|.+.+|...-.+
T Consensus 274 ~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 274 KCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999877543
No 433
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=31.42 E-value=2.6e+02 Score=24.03 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=39.2
Q ss_pred HHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 400 KFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
..+..+|..+.-.+++....+..-.+| ++...++..|.+.|+..++-+++.+|=+.-
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p----~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINP----EFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCH----HHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 345578888888888888776544444 888999999999999999999998876543
No 434
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=31.39 E-value=7.4e+02 Score=27.25 Aligned_cols=101 Identities=9% Similarity=-0.002 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARA 645 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 645 (703)
|+.++|+...++.-...+....+.+-..++...- ....+.-...|+.+++..|..-. .......+ ..+...+.+
T Consensus 323 ~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d-~~~~~~l~~~~e~~~~~~P~~~~--~le~l~~~---~~~~~~~~~ 396 (547)
T PF14929_consen 323 GRLKEALNELEKFCISSTCALPIRLRAHLLEYFD-QNNSSVLSSCLEDCLKKDPTMSY--SLERLILL---HQKDYSAEQ 396 (547)
T ss_pred ccHHHHHHHHHHhccCCCccchHHHHHHHHHHhC-cccHHHHHHHHHHHhcCCCcHHH--HHHHHHhh---hhhHHHHHH
Confidence 5666776666654433333222333333332221 12445556777777777775321 11121111 122445555
Q ss_pred HHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 646 IYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 646 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
+++-..-..+-.....+|..|..-..+
T Consensus 397 Lle~i~~~l~~~~s~~iwle~~~~~l~ 423 (547)
T PF14929_consen 397 LLEMIALHLDLVPSHPIWLEFVSCFLK 423 (547)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHh
Confidence 555221111111235677777666655
No 435
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=31.38 E-value=3.2e+02 Score=23.09 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEM 633 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~ 633 (703)
+.........+.|+.+....+.++......+.... ++. .....|-.|...+..+.+..
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~-------------~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK-------------EGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc-------------cCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 45555555667788888888888777776543110 000 11123333445688888888
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCC
Q psy6461 634 ETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN 675 (703)
Q Consensus 634 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~ 675 (703)
+...|++..|.++.+.-.+.=+-+.+..+|..+.......-+
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 888999999999999988765655678999998887766654
No 436
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.80 E-value=5.8e+02 Score=25.82 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHH-----cCChHHHHHHHHHHhhccCcc
Q psy6461 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC-PPRYAKTLYLLYAKLEEE-----HGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 512 ~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~a~~~~~-----~g~~~~A~~~~~~al~~~p~~ 585 (703)
+...|..-+ ++++..++.++.... |.- ..+.-..+.+... .-++.....+|+-.....|..
T Consensus 263 Dr~lW~r~l-----------I~eg~all~rA~~~~~pGP--YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP 329 (415)
T COG4941 263 DRSLWDRAL-----------IDEGLALLDRALASRRPGP--YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP 329 (415)
T ss_pred chhhhhHHH-----------HHHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC
Confidence 556666655 378888888888764 332 2233333333322 235677777888777777764
Q ss_pred hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 586 EMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
. +.+....... +..+...+..+.+..... .-+... .+-..+.++.+.|..++|+.-|++|+.+...
T Consensus 330 v-V~LNRAVAla--~~~Gp~agLa~ve~L~~~~~L~gy~~--~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 330 V-VTLNRAVALA--MREGPAAGLAMVEALLARPRLDGYHL--YHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred e-EeehHHHHHH--HhhhHHhHHHHHHHhhcccccccccc--cHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 3 2333322222 223556666666665554 222222 6777888999999999999999999888543
No 437
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=30.69 E-value=3.4e+02 Score=23.10 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=39.9
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKL 196 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~ 196 (703)
...+........++..+...+ .++.+...++..+.+.+ ..+....++. ....-+.+..+.++.+.+.++++.-++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELY 92 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHH
Confidence 344566677777777776655 34566777777776543 3444444442 112223333344444555555555444
Q ss_pred H
Q psy6461 197 A 197 (703)
Q Consensus 197 ~ 197 (703)
.
T Consensus 93 ~ 93 (140)
T smart00299 93 K 93 (140)
T ss_pred H
Confidence 3
No 438
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.06 E-value=4.2e+02 Score=23.99 Aligned_cols=113 Identities=9% Similarity=-0.021 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHH-----HHHHHHHhcCCh
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP--RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWP-----LYLSFVKSHAVP 158 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~ 158 (703)
+..++|...|...-+..-++. -.....+.+....|+...|...|+.+-.-.|. |.... ..+-.+...|.+
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~---P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI---PQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC---cchhhHHHHHHHHHHHhccccH
Confidence 445566666665555443322 23334556666667777777777766554442 22221 122234456666
Q ss_pred HHHHHHHHHHH-hhCCCCHHHH--HHH-HHhcCCHHHHHHHHHHhhc
Q psy6461 159 ETAVRVFRRYL-KLFPEDAEDY--IEY-LSSIERLDEAAVKLAYIVN 201 (703)
Q Consensus 159 ~~A~~~~~~~l-~~~p~~~~~~--~~~-~~~~~~~~~A~~~~~~~~~ 201 (703)
+......+..- ..+|-...+- +.+ ..+.|++.+|.+.|..+.+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 65554444321 1222222211 122 2467888888888887764
No 439
>KOG1920|consensus
Probab=29.59 E-value=1.1e+03 Score=28.54 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHh------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 104 KMPRIWLDYGRFLMD------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
++|.=++-+.+=+.. .-+++.-++-|++||...... ....|.....+-.+.|-+..|..+|+-..+....-..
T Consensus 865 kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~-~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~ 943 (1265)
T KOG1920|consen 865 KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSEC-GETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYE 943 (1265)
T ss_pred cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHc-CccccHHHHHHHHhcccchhhhheeccCHHHHHHHHH
Confidence 455555555554432 235667777777777755432 2345666666666677666666665543332222222
Q ss_pred HHHHHH-------------HhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHh
Q psy6461 178 DYIEYL-------------SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244 (703)
Q Consensus 178 ~~~~~~-------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (703)
+|...+ ...|+.++|++.|... .-|.+...+...-.. ..+
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~---------------~dWr~~l~~a~ql~~-----~~d------- 996 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKLEKALKAYKEC---------------GDWREALSLAAQLSE-----GKD------- 996 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHh---------------ccHHHHHHHHHhhcC-----CHH-------
Confidence 344433 3455555555555443 235555544321100 000
Q ss_pred hhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhh
Q psy6461 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQT 281 (703)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 281 (703)
.....-..|+.-+..++++-+|-.+.+..+..
T Consensus 997 -----e~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 997 -----ELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred -----HHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 11122356667777778887877777665543
No 440
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=29.54 E-value=1.3e+02 Score=25.23 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHH
Q psy6461 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVF 292 (703)
Q Consensus 255 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~ 292 (703)
-..+|+.+...|++++|...|-+++..+|.+.++..+|
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34678888899999999999999999999877654443
No 441
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.99 E-value=3.5e+02 Score=22.72 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHH----HHHHHHHHcCChHHHHHHHHHHhh
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYL----LYAKLEEEHGLARHAMAVYERATG 580 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~----~~a~~~~~~g~~~~A~~~~~~al~ 580 (703)
++|+.+|++-=+++.+. -.+|+ +-+..+...|..++|.+.|..+-+
T Consensus 79 ~~aL~YFNRRGEL~qde--GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 79 DRALRYFNRRGELHQDE--GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHH--TTSTH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccc--chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 56666666666666665 24554 344556677888888888876644
No 442
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.92 E-value=5.9e+02 Score=25.01 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=65.4
Q ss_pred ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcch---HHHHHHHHHHHHH-Hhc
Q psy6461 531 KLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEE---MFEMFNIYIKKAA-EIY 602 (703)
Q Consensus 531 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~-~~~ 602 (703)
+..+|...|..+... .+ +.....++.++.. ..+..+|...|++|......+. ...+-..|..-.. ..-
T Consensus 92 ~~~~A~~~~~~~a~~--g~--~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAAD--GL--AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhc--cc--HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 346777777744433 22 3466667777665 3377888888888887754432 1111111111100 011
Q ss_pred --CchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-cC---CHHHHHHHHHHHhccc
Q psy6461 603 --GIPKTRQIYERAIESLPEEPTRQMCLKFAEMETK-LG---EIDRARAIYAHCSQIC 654 (703)
Q Consensus 603 --~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~-~g---~~~~A~~~~~~a~~~~ 654 (703)
+...|...|.++-...- +. ....++.++.. .| +..+|..+|.+|.+..
T Consensus 168 ~~~~~~A~~~~~~aa~~~~--~~--a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 168 AYDDKKALYLYRKAAELGN--PD--AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cHHHHhHHHHHHHHHHhcC--HH--HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 22368888888777652 12 44444444433 23 6888999999888773
No 443
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=27.83 E-value=92 Score=23.52 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=10.4
Q ss_pred cCCHHHHHHHHHHHhcc
Q psy6461 637 LGEIDRARAIYAHCSQI 653 (703)
Q Consensus 637 ~g~~~~A~~~~~~a~~~ 653 (703)
.|++++|..+|..+++.
T Consensus 19 ~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 19 RGDAAAALSLYCSALQY 35 (75)
T ss_pred hccHHHHHHHHHHHHHH
Confidence 56666666666666553
No 444
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=27.61 E-value=3.8e+02 Score=22.64 Aligned_cols=19 Identities=0% Similarity=-0.469 Sum_probs=13.1
Q ss_pred chhHHHHHHHHHHhhCCCC
Q psy6461 45 PKAIINTIYERSLKELPGS 63 (703)
Q Consensus 45 ~~~~a~~~~e~al~~~P~~ 63 (703)
++.+|...++++++..|.+
T Consensus 4 nf~kAl~~L~~a~~~~~~~ 22 (123)
T TIGR01987 4 SFEQALMQLSDANWFDLTN 22 (123)
T ss_pred HHHHHHHHHHHHHhcCccc
Confidence 4677777888887775544
No 445
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=27.60 E-value=1.2e+02 Score=29.62 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 134 (703)
|+..|.+|+...|.+...|..+|.+....|+.=.|.=.|-|++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHh
Confidence 45667777777777777777777777666666666666666664
No 446
>KOG2908|consensus
Probab=27.56 E-value=6.6e+02 Score=25.45 Aligned_cols=86 Identities=6% Similarity=0.090 Sum_probs=53.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc---CCCCcchHHHHHHHHHHHHH-
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV---PYTKVEDLATVWCEWAELEL- 441 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~- 441 (703)
++.++|++..++.++.+.....+.....+....+.++...|+.+.+++.+..+-+. -+.-+.....-++.++.-|+
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk 168 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYK 168 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHH
Confidence 67888999999888775444333344556666788888999999999988776442 11111111234555554444
Q ss_pred HcCCHHHHHH
Q psy6461 442 RAGQEEAALR 451 (703)
Q Consensus 442 ~~~~~~~A~~ 451 (703)
..|++...-.
T Consensus 169 ~~~d~a~yYr 178 (380)
T KOG2908|consen 169 KIGDFASYYR 178 (380)
T ss_pred HHHhHHHHHH
Confidence 4566665543
No 447
>KOG2460|consensus
Probab=26.71 E-value=7e+02 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.141 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhh
Q psy6461 255 WNSLADYYIRSGLFERARDIYEEAIQT 281 (703)
Q Consensus 255 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 281 (703)
...++..|...+++.+|..+|.++...
T Consensus 425 C~~iA~sY~a~~K~~EAlALy~Ra~sy 451 (593)
T KOG2460|consen 425 CFYIAVSYQAKKKYSEALALYVRAYSY 451 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999998753
No 448
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.61 E-value=1e+02 Score=23.38 Aligned_cols=29 Identities=21% Similarity=0.051 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy6461 160 TAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIV 200 (703)
Q Consensus 160 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~ 200 (703)
.|+.+.+++++.+ ..|++++|+.+|.+++
T Consensus 5 ~Ai~~a~~Ave~D------------~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 5 DAVQFARLAVQRD------------QEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHHHHHH------------HccCHHHHHHHHHHHH
Confidence 4566666666554 6788888888888776
No 449
>KOG0686|consensus
Probab=24.96 E-value=2.9e+02 Score=28.59 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
-.....++..|...|+++.|.+.|.|+-.- .++.......|+.+..+-.-.|+|........+|....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence 345677888999999999999999995443 33333445778888888888999999999988887764
No 450
>KOG2066|consensus
Probab=24.52 E-value=1.1e+03 Score=26.96 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
.+...|+..|...++|.+|...|-.+-+
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 3455599999999999999999877543
No 451
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.26 E-value=8.2e+02 Score=25.44 Aligned_cols=60 Identities=12% Similarity=-0.076 Sum_probs=36.9
Q ss_pred HHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcC
Q psy6461 398 FGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR--AGQEEAALRLMARATAT 459 (703)
Q Consensus 398 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~~ 459 (703)
.+.-....+++..|..+++.++..-|.+.. ...+..++..|.. .-++.+|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555778888888888887775233321 2344455444433 55677888888876654
No 452
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.93 E-value=1.3e+02 Score=22.57 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=11.6
Q ss_pred HcCCHHHHHHHHHHHhcc
Q psy6461 636 KLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 636 ~~g~~~~A~~~~~~a~~~ 653 (703)
..|++++|...|.+|++.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 18 NAGNYEEALRLYQHALEY 35 (75)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 356677777777666553
No 453
>KOG4521|consensus
Probab=22.21 E-value=1.4e+03 Score=27.53 Aligned_cols=147 Identities=16% Similarity=0.110 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
|....+++...|-.+.+.++-.+|++.-|..-+...-++...=......|.+.+|.+.+ -.+|+. +
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npds-e--------- 1051 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDS-E--------- 1051 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcH-H---------
Confidence 44445666677777888888777777633322222233333333344566677765443 345542 0
Q ss_pred HHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHH-HHHHHHHhCCCcchHH
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARD-LFEQCLEACPPRYAKT 553 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~ 553 (703)
..-.-...++.++...|.+ +++..||. .|-.++... +++.+.+..|-.- ..
T Consensus 1052 ----rrrdcLRqlvivLfecg~l----~~L~~fpf-------------------igl~~eve~~l~esaaRs~~~mk-~n 1103 (1480)
T KOG4521|consen 1052 ----RRRDCLRQLVIVLFECGEL----EALATFPF-------------------IGLEQEVEDFLRESAARSSPSMK-KN 1103 (1480)
T ss_pred ----HHHHHHHHHHHHHHhccch----HHHhhCCc-------------------cchHHHHHHHHHHHHhhcCcccc-cc
Confidence 0012233444555556665 23333321 122355555 6666666655431 23
Q ss_pred HHHHHHHHHHHcCChHHHHH-HHHHHhhccC
Q psy6461 554 LYLLYAKLEEEHGLARHAMA-VYERATGAVL 583 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~-~~~~al~~~p 583 (703)
.|-.+-.++...+|+.+|-. +|+.++....
T Consensus 1104 yYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1104 YYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 44444455666677766654 6777766543
No 454
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.20 E-value=3.9e+02 Score=25.73 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 626 MCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+....|..+.+.|++++|.++|+.+...
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5567778888888888888888888554
No 455
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=21.86 E-value=9.1e+02 Score=25.10 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=32.3
Q ss_pred hCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH--HcCChHHHHHHHHHHhhc
Q psy6461 527 YGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEE--EHGLARHAMAVYERATGA 581 (703)
Q Consensus 527 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~--~~g~~~~A~~~~~~al~~ 581 (703)
+..+++..|.++|+..+...|.......+..++..+. ..-++.+|...+++.+..
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456678888888888876444311123344433333 345677788777776654
No 456
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=21.86 E-value=4.3e+02 Score=27.84 Aligned_cols=24 Identities=8% Similarity=-0.233 Sum_probs=18.0
Q ss_pred HHHcCChHHHHHHHHHHhhccCcc
Q psy6461 562 EEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 562 ~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
..+.+||..|...-+|.++..|..
T Consensus 310 ~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 310 AFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp CCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHhccHHHHHHHHHHHHHcCCCH
Confidence 347889999999999999888865
No 457
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=21.69 E-value=3.4e+02 Score=20.58 Aligned_cols=15 Identities=20% Similarity=0.700 Sum_probs=7.1
Q ss_pred HHHHHHHHhCCCcch
Q psy6461 609 QIYERAIESLPEEPT 623 (703)
Q Consensus 609 ~~~~~al~~~p~~~~ 623 (703)
+++.++++..||++.
T Consensus 34 e~L~q~~~~~pD~~~ 48 (75)
T cd02682 34 EVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHhCCChHH
Confidence 334444455555543
No 458
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=21.64 E-value=6.4e+02 Score=24.95 Aligned_cols=61 Identities=15% Similarity=0.387 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 624 RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
..+...-..++...+++.+-.+++++++....|..+..-|..+...-.+.|+..-.+++++
T Consensus 202 ~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 202 RNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3356666777777888888888888887764455567788888888888888877777765
No 459
>KOG1920|consensus
Probab=21.44 E-value=1.5e+03 Score=27.43 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHH
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEE 277 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~ 277 (703)
.+..+++.+.+.+.+++|.-.|++
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHH
Confidence 445555555555555555555554
No 460
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.20 E-value=6e+02 Score=28.04 Aligned_cols=78 Identities=9% Similarity=0.054 Sum_probs=50.7
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
+..++.++...+.-+.....+..--+.-+++.-+ -++.++|-.+|++.+..+|+ ..+..+++-+.+.|-.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHD--------VNETERAYALYETLIAQNND--EARYEYARRLYNTGLA 90 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh--------hhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhh
Confidence 4556666666665544333333322233333222 26678899999999999997 6677888888888877
Q ss_pred HHHHHHHH
Q psy6461 123 TQTRHVFD 130 (703)
Q Consensus 123 ~~A~~~~~ 130 (703)
..|+.+++
T Consensus 91 ~~~~~~~~ 98 (578)
T PRK15490 91 KDAQLILK 98 (578)
T ss_pred hHHHHHHH
Confidence 78887777
No 461
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=20.96 E-value=5.6e+02 Score=22.25 Aligned_cols=71 Identities=8% Similarity=0.114 Sum_probs=41.1
Q ss_pred hhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCccc
Q psy6461 215 QLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRD 287 (703)
Q Consensus 215 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 287 (703)
.+|..+......+|.....+..++..+..+.-..+ .+.....+.-....|++.-|..+.+.++...|+...
T Consensus 35 aIy~~Y~GWfDgnP~~L~pl~p~~~A~~~v~l~GG--~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ 105 (141)
T PF14863_consen 35 AIYQGYLGWFDGNPANLNPLPPEEEAKRYVELAGG--ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE 105 (141)
T ss_dssp HHHHHHC-S--S-GGGTS---HHHHHHHHHHHTTC--HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHcCCccCCCccccCCCChHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH
Confidence 34444445555666666655555555555444332 255667777788899999999999999998887553
Done!