Query psy6461
Match_columns 703
No_of_seqs 219 out of 2404
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 18:30:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ooe_A Cleavage stimulation fa 100.0 7.5E-37 2.6E-41 335.1 46.3 437 19-689 1-492 (530)
2 4e6h_A MRNA 3'-END-processing 100.0 4E-37 1.4E-41 337.7 43.8 464 18-694 53-573 (679)
3 2xpi_A Anaphase-promoting comp 100.0 2.1E-33 7.2E-38 313.0 46.7 481 29-669 82-593 (597)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-32 7.8E-37 287.3 47.3 374 43-638 12-387 (388)
5 2ooe_A Cleavage stimulation fa 100.0 1.5E-32 5E-37 301.0 41.1 424 13-656 28-495 (530)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-31 3.7E-36 282.1 45.7 373 86-674 13-387 (388)
7 4e6h_A MRNA 3'-END-processing 100.0 6E-32 2.1E-36 296.7 43.3 450 13-627 82-580 (679)
8 2xpi_A Anaphase-promoting comp 100.0 4.6E-31 1.6E-35 294.1 37.8 468 62-689 82-579 (597)
9 3fp2_A TPR repeat-containing p 100.0 1.6E-28 5.4E-33 269.8 42.9 440 30-656 24-494 (537)
10 2gw1_A Mitochondrial precursor 100.0 7.5E-28 2.6E-32 262.7 41.0 457 30-666 5-489 (514)
11 2y4t_A DNAJ homolog subfamily 100.0 2E-27 7E-32 254.7 41.5 197 366-622 191-415 (450)
12 2uy1_A Cleavage stimulation fa 100.0 1.2E-28 4E-33 264.0 31.0 424 13-682 11-445 (493)
13 2y4t_A DNAJ homolog subfamily 100.0 4.5E-27 1.5E-31 252.0 39.7 236 366-655 157-412 (450)
14 3fp2_A TPR repeat-containing p 100.0 4.7E-28 1.6E-32 266.0 32.2 454 63-690 24-492 (537)
15 2uy1_A Cleavage stimulation fa 100.0 3.6E-27 1.2E-31 252.5 35.3 235 392-690 172-414 (493)
16 2gw1_A Mitochondrial precursor 100.0 8.8E-26 3E-30 246.3 40.4 276 351-689 183-478 (514)
17 3ieg_A DNAJ homolog subfamily 100.0 2.6E-24 8.8E-29 222.6 44.5 336 105-671 2-351 (359)
18 3ieg_A DNAJ homolog subfamily 99.9 2.3E-24 7.7E-29 223.1 40.0 347 63-637 2-353 (359)
19 3hym_B Cell division cycle pro 99.9 6.2E-23 2.1E-27 209.7 34.4 304 19-497 10-321 (330)
20 4g1t_A Interferon-induced prot 99.9 6.3E-23 2.2E-27 221.2 34.1 385 30-655 50-461 (472)
21 3hym_B Cell division cycle pro 99.9 2.7E-22 9.1E-27 205.0 33.7 299 96-640 12-321 (330)
22 2ond_A Cleavage stimulation fa 99.9 1E-22 3.6E-27 205.9 26.9 236 391-688 7-269 (308)
23 4g1t_A Interferon-induced prot 99.9 1.5E-21 5E-26 210.5 35.1 402 105-696 50-466 (472)
24 2ond_A Cleavage stimulation fa 99.9 3.8E-22 1.3E-26 201.8 26.4 240 351-657 5-274 (308)
25 1fch_A Peroxisomal targeting s 99.9 4.1E-22 1.4E-26 207.1 25.9 206 393-653 133-359 (368)
26 1fch_A Peroxisomal targeting s 99.9 3.6E-22 1.2E-26 207.6 25.4 306 86-618 39-360 (368)
27 4eqf_A PEX5-related protein; a 99.9 7.1E-22 2.4E-26 205.2 24.2 305 92-654 47-357 (365)
28 4eqf_A PEX5-related protein; a 99.9 5.6E-21 1.9E-25 198.5 24.7 266 353-684 64-351 (365)
29 2h6f_A Protein farnesyltransfe 99.9 2.4E-20 8.1E-25 192.5 26.5 262 23-493 89-365 (382)
30 3cv0_A Peroxisome targeting si 99.9 1.5E-20 5.1E-25 191.7 24.0 281 27-497 16-302 (327)
31 2xm6_A Protein corresponding t 99.9 1.2E-17 4E-22 180.7 47.6 377 61-635 36-451 (490)
32 2xm6_A Protein corresponding t 99.8 7.3E-17 2.5E-21 174.4 47.8 384 92-669 27-449 (490)
33 2h6f_A Protein farnesyltransfe 99.8 1E-19 3.6E-24 187.7 23.6 256 346-672 89-365 (382)
34 2pl2_A Hypothetical conserved 99.8 1.6E-19 5.4E-24 172.2 22.3 211 390-652 3-213 (217)
35 3cv0_A Peroxisome targeting si 99.8 2.6E-19 8.9E-24 182.4 25.4 281 353-686 20-312 (327)
36 2pl2_A Hypothetical conserved 99.8 7.7E-18 2.6E-22 160.4 22.9 200 423-687 2-212 (217)
37 3u4t_A TPR repeat-containing p 99.8 1.1E-17 3.9E-22 165.5 24.6 243 365-672 16-267 (272)
38 2q7f_A YRRB protein; TPR, prot 99.8 8.6E-18 2.9E-22 163.1 21.8 220 391-674 22-241 (243)
39 3uq3_A Heat shock protein STI1 99.8 2.7E-17 9.1E-22 161.1 25.2 227 355-654 6-237 (258)
40 3u4t_A TPR repeat-containing p 99.8 3.6E-17 1.2E-21 161.8 26.1 239 392-689 3-250 (272)
41 3mkr_A Coatomer subunit epsilo 99.8 1.6E-16 5.6E-21 158.4 29.6 208 366-647 79-288 (291)
42 3mkr_A Coatomer subunit epsilo 99.8 9.1E-17 3.1E-21 160.2 24.5 254 364-656 11-267 (291)
43 3vtx_A MAMA; tetratricopeptide 99.8 5.1E-17 1.8E-21 150.4 20.6 172 390-621 3-174 (184)
44 3uq3_A Heat shock protein STI1 99.8 2.4E-16 8.1E-21 154.3 26.4 235 391-691 4-238 (258)
45 2ho1_A Type 4 fimbrial biogene 99.7 2.6E-16 9E-21 153.6 25.4 202 392-655 37-240 (252)
46 2vq2_A PILW, putative fimbrial 99.7 5.9E-16 2E-20 148.0 26.6 204 390-655 6-213 (225)
47 3vtx_A MAMA; tetratricopeptide 99.7 2E-16 6.9E-21 146.3 21.8 170 29-284 3-173 (184)
48 3sf4_A G-protein-signaling mod 99.7 6.3E-17 2.1E-21 170.2 18.4 316 252-676 9-363 (406)
49 2q7f_A YRRB protein; TPR, prot 99.7 2.6E-16 8.8E-21 152.6 21.3 216 354-637 23-240 (243)
50 2ho1_A Type 4 fimbrial biogene 99.7 1.4E-15 4.9E-20 148.4 26.6 210 348-623 30-244 (252)
51 1xnf_A Lipoprotein NLPI; TPR, 99.7 7.9E-17 2.7E-21 159.5 17.2 124 43-176 18-145 (275)
52 1xi4_A Clathrin heavy chain; a 99.7 7.7E-14 2.6E-18 157.8 42.6 332 19-504 1028-1375(1630)
53 2vq2_A PILW, putative fimbrial 99.7 2.3E-15 7.9E-20 143.8 26.3 209 349-623 3-217 (225)
54 3sf4_A G-protein-signaling mod 99.7 3.7E-16 1.3E-20 164.2 22.6 319 28-497 6-363 (406)
55 1xi4_A Clathrin heavy chain; a 99.7 1.4E-13 4.7E-18 155.7 43.7 399 85-677 1062-1478(1630)
56 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.5E-16 8.4E-21 156.0 18.8 248 366-682 19-268 (275)
57 4a1s_A PINS, partner of inscut 99.7 3E-16 1E-20 165.5 20.4 295 28-462 45-375 (411)
58 4abn_A Tetratricopeptide repea 99.7 3.5E-16 1.2E-20 167.6 21.2 221 368-650 84-318 (474)
59 4a1s_A PINS, partner of inscut 99.7 3.3E-16 1.1E-20 165.2 20.3 293 253-654 49-373 (411)
60 3ro2_A PINS homolog, G-protein 99.7 1.6E-15 5.6E-20 154.5 24.1 292 31-462 5-335 (338)
61 3ro2_A PINS homolog, G-protein 99.7 3.8E-16 1.3E-20 159.2 18.6 294 253-655 6-334 (338)
62 4gyw_A UDP-N-acetylglucosamine 99.7 9.5E-16 3.3E-20 170.6 20.4 142 26-177 4-146 (723)
63 3e4b_A ALGK; tetratricopeptide 99.7 7.3E-14 2.5E-18 148.6 33.0 193 392-654 176-388 (452)
64 3e4b_A ALGK; tetratricopeptide 99.7 4.4E-15 1.5E-19 158.0 23.2 212 367-652 194-420 (452)
65 4i17_A Hypothetical protein; T 99.7 1.2E-14 4.3E-19 139.4 23.0 212 391-671 6-225 (228)
66 4abn_A Tetratricopeptide repea 99.7 3.4E-15 1.2E-19 159.9 20.8 213 406-683 82-315 (474)
67 1ouv_A Conserved hypothetical 99.6 6.6E-14 2.3E-18 138.4 27.2 230 350-655 2-253 (273)
68 4gyw_A UDP-N-acetylglucosamine 99.6 4.7E-15 1.6E-19 165.0 20.1 171 389-619 6-176 (723)
69 4i17_A Hypothetical protein; T 99.6 2.6E-14 9E-19 137.1 21.1 195 431-690 8-210 (228)
70 1ouv_A Conserved hypothetical 99.6 4E-13 1.4E-17 132.8 29.3 225 390-690 4-252 (273)
71 3nf1_A KLC 1, kinesin light ch 99.6 1.9E-15 6.4E-20 152.4 12.0 254 348-655 21-309 (311)
72 3ulq_A Response regulator aspa 99.6 1.3E-13 4.3E-18 143.9 25.6 240 364-655 115-370 (383)
73 3qky_A Outer membrane assembly 99.6 1.7E-13 5.9E-18 134.4 24.7 199 24-288 8-231 (261)
74 3qky_A Outer membrane assembly 99.6 6.9E-14 2.4E-18 137.3 21.3 192 390-623 13-230 (261)
75 3as5_A MAMA; tetratricopeptide 99.6 1.2E-13 3.9E-18 127.3 20.7 170 392-621 8-177 (186)
76 1b89_A Protein (clathrin heavy 99.6 3E-14 1E-18 145.1 17.9 377 86-684 17-412 (449)
77 3ulq_A Response regulator aspa 99.6 8.9E-14 3.1E-18 145.0 21.4 219 252-583 143-370 (383)
78 3as5_A MAMA; tetratricopeptide 99.6 3.2E-13 1.1E-17 124.3 21.1 169 430-656 8-176 (186)
79 1hz4_A MALT regulatory protein 99.6 2.5E-12 8.5E-17 133.4 29.7 325 107-620 15-352 (373)
80 3q15_A PSP28, response regulat 99.5 1E-12 3.5E-17 136.6 26.2 239 363-653 112-365 (378)
81 4ga2_A E3 SUMO-protein ligase 99.5 3.1E-14 1.1E-18 126.4 11.4 133 37-179 3-137 (150)
82 3urz_A Uncharacterized protein 99.5 2.9E-13 1E-17 127.6 17.9 170 391-621 3-190 (208)
83 2r5s_A Uncharacterized protein 99.5 1.1E-13 3.7E-18 126.8 14.1 138 27-175 2-141 (176)
84 3dra_A Protein farnesyltransfe 99.5 5E-12 1.7E-16 124.9 26.9 235 367-668 48-301 (306)
85 3nf1_A KLC 1, kinesin light ch 99.5 8.9E-14 3E-18 140.0 14.1 248 389-690 24-308 (311)
86 1hz4_A MALT regulatory protein 99.5 7.4E-12 2.5E-16 129.9 28.9 295 253-655 15-324 (373)
87 4ga2_A E3 SUMO-protein ligase 99.5 4.3E-14 1.5E-18 125.5 9.8 130 398-585 3-133 (150)
88 2pzi_A Probable serine/threoni 99.5 2.3E-13 8E-18 152.3 17.8 174 403-639 402-583 (681)
89 2pzi_A Probable serine/threoni 99.5 3E-13 1E-17 151.4 18.1 175 348-588 388-570 (681)
90 3edt_B KLC 2, kinesin light ch 99.5 1.2E-13 4.2E-18 136.8 12.4 234 366-653 15-281 (283)
91 3urz_A Uncharacterized protein 99.5 6.7E-13 2.3E-17 125.1 16.5 169 431-656 5-189 (208)
92 2r5s_A Uncharacterized protein 99.5 6.2E-13 2.1E-17 121.7 15.9 166 393-616 7-172 (176)
93 2yhc_A BAMD, UPF0169 lipoprote 99.5 2.8E-12 9.7E-17 122.5 20.9 190 30-285 3-217 (225)
94 3q15_A PSP28, response regulat 99.5 2.6E-11 9E-16 125.9 28.9 247 254-617 103-365 (378)
95 1b89_A Protein (clathrin heavy 99.5 1E-12 3.5E-17 133.8 17.5 390 43-648 16-412 (449)
96 3qou_A Protein YBBN; thioredox 99.5 1.6E-12 5.3E-17 129.3 18.6 170 28-281 114-284 (287)
97 3edt_B KLC 2, kinesin light ch 99.5 8.5E-13 2.9E-17 130.6 16.2 164 43-282 14-199 (283)
98 4gco_A Protein STI-1; structur 99.5 7.7E-13 2.6E-17 113.3 13.6 120 22-151 4-124 (126)
99 3gyz_A Chaperone protein IPGC; 99.5 3.2E-13 1.1E-17 119.2 11.5 111 19-137 24-135 (151)
100 1qqe_A Vesicular transport pro 99.5 9E-12 3.1E-16 124.3 23.0 260 47-462 2-272 (292)
101 3qou_A Protein YBBN; thioredox 99.4 3E-12 1E-16 127.3 19.0 169 390-616 115-283 (287)
102 3dra_A Protein farnesyltransfe 99.4 2.6E-11 9E-16 119.8 25.2 222 405-686 46-284 (306)
103 1qqe_A Vesicular transport pro 99.4 2.3E-12 8E-17 128.5 16.7 209 399-653 44-269 (292)
104 2yhc_A BAMD, UPF0169 lipoprote 99.4 7.4E-12 2.5E-16 119.6 19.3 212 391-655 3-215 (225)
105 2vgx_A Chaperone SYCD; alterna 99.4 3.1E-12 1.1E-16 113.0 14.3 115 16-138 6-121 (148)
106 3gyz_A Chaperone protein IPGC; 99.4 7.9E-13 2.7E-17 116.7 10.3 116 51-176 23-138 (151)
107 4gco_A Protein STI-1; structur 99.4 3.1E-12 1.1E-16 109.5 13.2 117 55-181 4-120 (126)
108 2vsy_A XCC0866; transferase, g 99.4 6E-12 2E-16 138.5 17.7 161 13-183 5-169 (568)
109 2fo7_A Synthetic consensus TPR 99.4 2.3E-11 7.9E-16 105.0 18.0 134 32-175 2-136 (136)
110 2xcb_A PCRH, regulatory protei 99.4 3.2E-12 1.1E-16 112.2 10.8 113 18-138 5-118 (142)
111 2vsy_A XCC0866; transferase, g 99.3 1.9E-11 6.6E-16 134.4 19.3 156 366-585 3-161 (568)
112 2vgx_A Chaperone SYCD; alterna 99.3 2.9E-12 1E-16 113.2 9.8 119 49-177 6-124 (148)
113 3dss_A Geranylgeranyl transfer 99.3 9E-10 3.1E-14 109.3 27.3 233 366-665 43-314 (331)
114 4f3v_A ESX-1 secretion system 99.3 1.3E-11 4.5E-16 118.8 13.6 219 404-668 18-249 (282)
115 3q7a_A Farnesyltransferase alp 99.3 3E-10 1E-14 113.2 23.7 244 366-668 68-345 (349)
116 2fo7_A Synthetic consensus TPR 99.3 8.4E-11 2.9E-15 101.4 16.9 133 394-584 3-135 (136)
117 3q7a_A Farnesyltransferase alp 99.3 4.1E-10 1.4E-14 112.2 23.4 233 391-684 53-326 (349)
118 2xcb_A PCRH, regulatory protei 99.3 1.2E-11 4E-16 108.6 9.7 117 51-177 5-121 (142)
119 2e2e_A Formate-dependent nitri 99.3 3.9E-11 1.3E-15 109.6 13.2 124 43-176 23-149 (177)
120 2c2l_A CHIP, carboxy terminus 99.3 2.5E-11 8.4E-16 120.2 12.4 193 391-653 3-199 (281)
121 4h7y_A Dual specificity protei 99.3 5.5E-11 1.9E-15 98.9 12.1 111 348-463 7-127 (161)
122 2e2e_A Formate-dependent nitri 99.3 2.7E-10 9.1E-15 104.0 18.1 125 13-147 26-154 (177)
123 1p5q_A FKBP52, FK506-binding p 99.2 3.8E-11 1.3E-15 122.1 12.9 148 14-171 130-294 (336)
124 3upv_A Heat shock protein STI1 99.2 1.2E-10 4E-15 99.7 13.7 115 28-152 1-122 (126)
125 2ifu_A Gamma-SNAP; membrane fu 99.2 2.4E-10 8.3E-15 114.7 18.3 197 437-682 43-254 (307)
126 3dss_A Geranylgeranyl transfer 99.2 4.2E-09 1.4E-13 104.5 26.5 221 404-684 41-299 (331)
127 1p5q_A FKBP52, FK506-binding p 99.2 3.2E-11 1.1E-15 122.6 10.8 124 43-176 126-264 (336)
128 2lni_A Stress-induced-phosphop 99.2 2.2E-10 7.6E-15 98.6 14.3 121 26-156 11-132 (133)
129 1a17_A Serine/threonine protei 99.2 4E-10 1.4E-14 101.3 16.1 131 30-170 12-145 (166)
130 2ifu_A Gamma-SNAP; membrane fu 99.2 3.3E-10 1.1E-14 113.7 16.9 231 366-645 5-253 (307)
131 2c2l_A CHIP, carboxy terminus 99.2 7.8E-11 2.7E-15 116.5 12.0 156 28-200 1-162 (281)
132 2vyi_A SGTA protein; chaperone 99.2 2.4E-10 8E-15 98.0 13.0 124 25-158 6-130 (131)
133 1hxi_A PEX5, peroxisome target 99.2 1.4E-10 4.9E-15 98.2 10.6 99 32-138 18-117 (121)
134 3sz7_A HSC70 cochaperone (SGT) 99.1 3.8E-10 1.3E-14 101.6 13.3 110 26-145 6-116 (164)
135 3q49_B STIP1 homology and U bo 99.1 4.9E-10 1.7E-14 97.2 13.4 119 25-151 3-125 (137)
136 1na0_A Designed protein CTPR3; 99.1 1.5E-09 5E-14 92.1 15.7 118 27-154 4-123 (125)
137 4f3v_A ESX-1 secretion system 99.1 3.5E-10 1.2E-14 109.0 12.8 203 366-631 20-248 (282)
138 1a17_A Serine/threonine protei 99.1 8.7E-10 3E-14 99.1 14.9 133 392-582 13-147 (166)
139 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2E-09 6.8E-14 101.4 17.9 147 33-199 8-169 (213)
140 2dba_A Smooth muscle cell asso 99.1 6.5E-10 2.2E-14 97.8 13.2 122 22-153 19-144 (148)
141 4h7y_A Dual specificity protei 99.1 7.3E-10 2.5E-14 92.3 12.1 103 26-137 8-125 (161)
142 3upv_A Heat shock protein STI1 99.1 7.3E-10 2.5E-14 94.6 12.7 108 61-178 1-114 (126)
143 1elw_A TPR1-domain of HOP; HOP 99.1 1.8E-09 6.2E-14 90.4 15.0 113 30-152 3-116 (118)
144 3rjv_A Putative SEL1 repeat pr 99.1 5E-09 1.7E-13 98.7 19.1 115 532-653 69-197 (212)
145 2lni_A Stress-induced-phosphop 99.1 2.4E-09 8.1E-14 92.1 15.1 121 389-567 13-133 (133)
146 2kck_A TPR repeat; tetratricop 99.1 1E-09 3.5E-14 91.0 12.4 104 27-138 2-109 (112)
147 1hh8_A P67PHOX, NCF-2, neutrop 99.1 4.7E-09 1.6E-13 98.8 18.5 133 394-585 8-154 (213)
148 1hxi_A PEX5, peroxisome target 99.1 9.1E-10 3.1E-14 93.2 11.1 101 66-176 19-119 (121)
149 3sz7_A HSC70 cochaperone (SGT) 99.1 1.2E-09 4.1E-14 98.3 12.5 112 59-180 6-117 (164)
150 2fbn_A 70 kDa peptidylprolyl i 99.1 6.7E-10 2.3E-14 103.5 10.9 145 14-168 21-183 (198)
151 2vyi_A SGTA protein; chaperone 99.0 3.8E-09 1.3E-13 90.3 14.4 120 391-568 11-130 (131)
152 3mv2_B Coatomer subunit epsilo 99.0 2.7E-08 9.1E-13 97.1 21.5 192 371-623 85-288 (310)
153 3rjv_A Putative SEL1 repeat pr 99.0 1.1E-08 3.6E-13 96.4 17.7 182 370-619 4-199 (212)
154 3mv2_B Coatomer subunit epsilo 99.0 3.3E-08 1.1E-12 96.5 21.0 184 411-657 85-286 (310)
155 2fbn_A 70 kDa peptidylprolyl i 99.0 5.9E-10 2E-14 103.9 8.4 127 43-179 17-159 (198)
156 1dce_A Protein (RAB geranylger 99.0 1.3E-08 4.3E-13 110.5 20.0 180 405-642 42-244 (567)
157 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 1.3E-09 4.3E-14 115.8 11.9 144 15-168 252-412 (457)
158 3q49_B STIP1 homology and U bo 99.0 4.5E-09 1.6E-13 91.0 13.4 107 58-174 3-109 (137)
159 2kck_A TPR repeat; tetratricop 99.0 2.3E-09 8E-14 88.8 10.7 109 60-176 2-111 (112)
160 4gcn_A Protein STI-1; structur 99.0 3.2E-09 1.1E-13 90.7 11.6 101 30-138 7-115 (127)
161 2if4_A ATFKBP42; FKBP-like, al 99.0 5.7E-10 1.9E-14 113.4 8.0 147 20-176 168-333 (338)
162 1na0_A Designed protein CTPR3; 99.0 1.8E-08 6.1E-13 85.1 15.6 118 391-566 8-125 (125)
163 1elw_A TPR1-domain of HOP; HOP 99.0 1.4E-08 4.9E-13 84.8 14.6 113 392-562 4-116 (118)
164 4gcn_A Protein STI-1; structur 99.0 2.7E-09 9.1E-14 91.2 10.1 110 105-285 7-116 (127)
165 1wao_1 Serine/threonine protei 99.0 3.2E-10 1.1E-14 121.0 5.2 125 32-166 7-134 (477)
166 1dce_A Protein (RAB geranylger 99.0 5.9E-09 2E-13 113.1 15.3 153 18-180 50-230 (567)
167 1zu2_A Mitochondrial import re 98.9 4.8E-09 1.7E-13 90.9 10.8 95 43-137 15-122 (158)
168 2hr2_A Hypothetical protein; a 98.9 6.3E-09 2.2E-13 90.4 11.3 112 30-151 10-145 (159)
169 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 1.5E-09 5E-14 115.4 8.9 124 43-176 247-385 (457)
170 2qfc_A PLCR protein; TPR, HTH, 98.9 1.1E-07 3.6E-12 94.6 21.4 185 392-654 75-267 (293)
171 2xev_A YBGF; tetratricopeptide 98.9 2.1E-08 7.1E-13 85.7 14.1 97 34-138 5-108 (129)
172 2hr2_A Hypothetical protein; a 98.9 9.5E-09 3.2E-13 89.3 11.5 102 65-176 12-136 (159)
173 2qfc_A PLCR protein; TPR, HTH, 98.9 1.3E-07 4.4E-12 94.0 21.2 185 431-694 76-271 (293)
174 3rkv_A Putative peptidylprolyl 98.9 2E-08 6.7E-13 90.0 13.5 101 30-138 10-129 (162)
175 2dba_A Smooth muscle cell asso 98.9 2.7E-08 9.2E-13 87.2 14.0 113 58-180 22-137 (148)
176 1elr_A TPR2A-domain of HOP; HO 98.9 1.4E-08 4.6E-13 86.8 11.7 115 28-153 1-123 (131)
177 1zu2_A Mitochondrial import re 98.9 6.4E-09 2.2E-13 90.1 9.4 90 86-177 16-126 (158)
178 3k9i_A BH0479 protein; putativ 98.9 4.4E-09 1.5E-13 88.4 7.5 87 44-138 4-93 (117)
179 1wao_1 Serine/threonine protei 98.8 6.2E-08 2.1E-12 103.2 15.9 160 529-694 19-202 (477)
180 3k9i_A BH0479 protein; putativ 98.8 5.6E-09 1.9E-13 87.7 6.2 91 85-177 3-96 (117)
181 3rkv_A Putative peptidylprolyl 98.8 4.7E-08 1.6E-12 87.5 12.6 103 65-177 12-132 (162)
182 2kat_A Uncharacterized protein 98.8 1.9E-08 6.3E-13 84.2 9.3 84 47-138 2-85 (115)
183 3u3w_A Transcriptional activat 98.8 3.1E-07 1.1E-11 91.2 19.9 170 433-654 78-267 (293)
184 3u3w_A Transcriptional activat 98.8 2.2E-07 7.4E-12 92.3 18.4 176 396-617 79-266 (293)
185 2xev_A YBGF; tetratricopeptide 98.8 9.6E-08 3.3E-12 81.4 13.6 93 86-178 16-112 (129)
186 4b4t_Q 26S proteasome regulato 98.7 3.2E-07 1.1E-11 96.8 19.5 95 366-460 149-246 (434)
187 3gw4_A Uncharacterized protein 98.7 2.4E-07 8.2E-12 86.1 16.4 162 441-654 3-177 (203)
188 1ihg_A Cyclophilin 40; ppiase 98.7 4.8E-08 1.6E-12 100.3 12.3 118 31-158 223-357 (370)
189 1elr_A TPR2A-domain of HOP; HO 98.7 7.4E-08 2.5E-12 82.1 11.5 122 391-564 3-124 (131)
190 2if4_A ATFKBP42; FKBP-like, al 98.7 9.4E-09 3.2E-13 104.4 6.7 155 392-623 179-334 (338)
191 3gw4_A Uncharacterized protein 98.7 5.4E-07 1.8E-11 83.6 18.2 164 529-694 5-181 (203)
192 1ihg_A Cyclophilin 40; ppiase 98.7 1.2E-07 4.1E-12 97.3 13.8 124 392-573 223-362 (370)
193 4b4t_Q 26S proteasome regulato 98.7 5.1E-07 1.7E-11 95.2 18.3 214 394-653 6-245 (434)
194 3ly7_A Transcriptional activat 98.6 1.1E-06 3.6E-11 87.3 17.6 156 19-177 182-345 (372)
195 2kat_A Uncharacterized protein 98.6 1.9E-07 6.3E-12 77.9 9.6 86 533-622 2-87 (115)
196 3u64_A Protein TP_0956; tetrat 98.6 1.3E-06 4.4E-11 82.9 15.4 177 18-198 53-294 (301)
197 3ma5_A Tetratricopeptide repea 98.5 2.8E-07 9.6E-12 74.6 8.6 72 59-138 2-73 (100)
198 3u64_A Protein TP_0956; tetrat 98.5 3.4E-06 1.2E-10 80.1 16.6 123 498-621 138-273 (301)
199 1na3_A Designed protein CTPR2; 98.5 7.7E-07 2.6E-11 70.2 10.5 82 29-118 7-89 (91)
200 3ro3_A PINS homolog, G-protein 98.5 8.1E-07 2.8E-11 78.7 11.2 135 31-173 9-160 (164)
201 2l6j_A TPR repeat-containing p 98.4 2.1E-07 7E-12 76.9 5.8 91 31-129 4-101 (111)
202 1na3_A Designed protein CTPR2; 98.4 1.4E-06 4.9E-11 68.6 10.4 84 390-494 7-90 (91)
203 3ro3_A PINS homolog, G-protein 98.4 2.5E-06 8.5E-11 75.4 13.2 125 529-653 22-158 (164)
204 2l6j_A TPR repeat-containing p 98.4 1.9E-07 6.6E-12 77.0 4.6 93 64-164 4-100 (111)
205 4g26_A Pentatricopeptide repea 98.4 1.7E-05 5.7E-10 84.6 19.9 158 531-699 41-213 (501)
206 4g26_A Pentatricopeptide repea 98.4 2.6E-05 8.9E-10 83.1 21.4 187 431-672 27-222 (501)
207 3ma5_A Tetratricopeptide repea 98.3 1.3E-06 4.4E-11 70.6 7.7 73 101-175 2-74 (100)
208 2kc7_A BFR218_protein; tetratr 98.2 2.2E-06 7.5E-11 69.0 6.9 80 86-175 14-94 (99)
209 2kc7_A BFR218_protein; tetratr 98.2 2.7E-06 9.3E-11 68.4 7.4 87 36-138 5-93 (99)
210 3ly7_A Transcriptional activat 98.2 3E-05 1E-09 77.0 15.8 154 51-286 181-344 (372)
211 3bee_A Putative YFRE protein; 98.1 1E-05 3.4E-10 63.9 8.9 72 102-175 2-76 (93)
212 3bee_A Putative YFRE protein; 98.1 1.5E-05 5.1E-10 62.9 9.6 74 60-138 2-75 (93)
213 3n71_A Histone lysine methyltr 97.9 0.00018 6.3E-09 75.9 15.9 126 528-653 321-464 (490)
214 3n71_A Histone lysine methyltr 97.8 0.00024 8.1E-09 75.0 15.6 128 562-690 319-465 (490)
215 1pc2_A Mitochondria fission pr 97.7 0.0002 6.9E-09 61.2 10.3 94 84-178 10-107 (152)
216 1klx_A Cysteine rich protein B 97.7 0.00066 2.3E-08 58.2 13.2 111 44-172 9-127 (138)
217 1klx_A Cysteine rich protein B 97.7 0.00055 1.9E-08 58.7 12.3 110 531-654 10-127 (138)
218 1pc2_A Mitochondria fission pr 97.6 0.00046 1.6E-08 58.9 11.3 90 532-624 14-107 (152)
219 2wvi_A Mitotic checkpoint seri 97.4 0.0072 2.4E-07 52.2 15.8 137 499-672 5-143 (164)
220 4a1g_A Mitotic checkpoint seri 97.3 0.0016 5.5E-08 55.3 10.0 133 531-671 5-147 (152)
221 3qww_A SET and MYND domain-con 97.3 0.00078 2.7E-08 69.8 9.9 93 366-459 312-411 (433)
222 4a1g_A Mitotic checkpoint seri 97.3 0.0069 2.4E-07 51.5 13.7 119 568-693 6-134 (152)
223 3esl_A Checkpoint serine/threo 97.2 0.0048 1.6E-07 54.9 12.7 139 531-672 7-162 (202)
224 3qww_A SET and MYND domain-con 97.2 0.0017 5.9E-08 67.2 11.0 54 600-653 352-411 (433)
225 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0022 7.7E-08 51.6 9.5 74 105-178 4-82 (104)
226 4aez_C MAD3, mitotic spindle c 97.1 0.01 3.4E-07 53.9 14.2 131 532-670 51-195 (223)
227 3esl_A Checkpoint serine/threo 97.1 0.019 6.5E-07 51.1 15.7 120 498-618 13-145 (202)
228 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0057 1.9E-07 49.1 10.8 72 552-623 5-81 (104)
229 2wvi_A Mitotic checkpoint seri 97.0 0.0038 1.3E-07 53.9 10.0 116 573-694 4-130 (164)
230 3qwp_A SET and MYND domain-con 96.9 0.013 4.6E-07 60.6 14.7 90 564-653 299-400 (429)
231 1nzn_A CGI-135 protein, fissio 96.9 0.014 4.9E-07 47.8 11.6 93 532-627 17-113 (126)
232 4aez_C MAD3, mitotic spindle c 96.8 0.0092 3.2E-07 54.1 10.8 120 568-693 51-183 (223)
233 3qwp_A SET and MYND domain-con 96.8 0.004 1.4E-07 64.6 9.6 93 366-459 301-400 (429)
234 1nzn_A CGI-135 protein, fissio 96.2 0.037 1.3E-06 45.3 9.9 92 86-178 15-110 (126)
235 3txn_A 26S proteasome regulato 94.8 2.8 9.6E-05 42.2 20.0 186 253-460 20-211 (394)
236 1y8m_A FIS1; mitochondria, unk 94.6 0.39 1.3E-05 40.0 10.9 91 533-627 23-116 (144)
237 3o48_A Mitochondria fission 1 94.5 0.76 2.6E-05 37.7 12.1 89 533-625 24-115 (134)
238 3spa_A Mtrpol, DNA-directed RN 94.3 0.3 1E-05 54.9 12.5 123 553-690 128-259 (1134)
239 3txn_A 26S proteasome regulato 93.5 2.5 8.5E-05 42.5 16.6 94 528-621 111-214 (394)
240 3spa_A Mtrpol, DNA-directed RN 93.5 0.33 1.1E-05 54.6 10.9 100 512-618 126-231 (1134)
241 4gns_B Protein CSD3, chitin bi 93.3 0.41 1.4E-05 52.6 11.3 116 532-650 265-397 (754)
242 3mkq_A Coatomer beta'-subunit; 93.3 2.2 7.6E-05 48.1 18.2 97 86-199 666-762 (814)
243 3mkq_A Coatomer beta'-subunit; 93.2 3.5 0.00012 46.4 19.6 96 117-278 610-707 (814)
244 1zbp_A Hypothetical protein VP 92.8 1.7 5.9E-05 40.6 13.0 115 528-656 9-132 (273)
245 3ffl_A Anaphase-promoting comp 92.8 0.4 1.4E-05 41.2 8.0 50 86-135 34-92 (167)
246 3o48_A Mitochondria fission 1 92.5 0.9 3.1E-05 37.3 9.4 91 86-178 21-114 (134)
247 4gns_B Protein CSD3, chitin bi 92.0 1.3 4.3E-05 48.8 12.8 123 37-168 254-397 (754)
248 3mkq_B Coatomer subunit alpha; 90.8 7.5 0.00026 33.8 14.1 96 86-198 19-114 (177)
249 3ffl_A Anaphase-promoting comp 90.6 2.9 9.8E-05 35.9 11.0 110 525-650 29-148 (167)
250 1y8m_A FIS1; mitochondria, unk 90.4 6.8 0.00023 32.6 13.3 56 532-588 58-113 (144)
251 2ff4_A Probable regulatory pro 88.6 5.6 0.00019 40.2 13.6 99 43-169 128-232 (388)
252 1zbp_A Hypothetical protein VP 88.5 4 0.00014 38.2 11.1 126 402-549 7-133 (273)
253 2ff4_A Probable regulatory pro 84.7 9.5 0.00033 38.4 12.8 79 593-673 176-258 (388)
254 4fhn_B Nucleoporin NUP120; pro 84.4 40 0.0014 39.6 19.6 54 397-458 817-870 (1139)
255 4b4t_S RPN3, 26S proteasome re 84.1 2.4 8.1E-05 44.0 7.8 104 552-657 181-303 (523)
256 4b4t_R RPN7, 26S proteasome re 84.1 5.6 0.00019 40.8 10.9 102 553-654 132-238 (429)
257 4b4t_R RPN7, 26S proteasome re 81.4 13 0.00045 38.0 12.5 108 252-422 131-238 (429)
258 3mkq_B Coatomer subunit alpha; 78.5 33 0.0011 29.8 16.7 124 43-199 18-141 (177)
259 4b4t_P 26S proteasome regulato 78.3 25 0.00085 36.1 13.4 99 554-652 139-246 (445)
260 1ya0_A SMG-7 transcript varian 64.5 38 0.0013 35.2 10.9 65 394-462 154-218 (497)
261 1qsa_A Protein (soluble lytic 64.0 1.6E+02 0.0054 31.6 31.2 112 32-156 38-150 (618)
262 4b4t_P 26S proteasome regulato 60.9 1.5E+02 0.0051 30.2 23.8 31 391-421 55-85 (445)
263 1ya0_A SMG-7 transcript varian 59.1 40 0.0014 35.0 9.9 65 86-152 166-230 (497)
264 4b4t_S RPN3, 26S proteasome re 56.9 65 0.0022 33.4 10.7 112 350-463 177-303 (523)
265 1wy6_A Hypothetical protein ST 54.2 63 0.0022 26.7 7.9 63 589-653 92-154 (172)
266 1qsa_A Protein (soluble lytic 52.9 2.4E+02 0.0082 30.1 26.1 208 404-649 226-438 (618)
267 3lvg_A Clathrin heavy chain 1; 51.6 2.3 8E-05 43.5 -0.9 150 529-684 242-434 (624)
268 3ax2_A Mitochondrial import re 50.0 35 0.0012 24.6 5.3 37 256-292 21-57 (73)
269 4fhn_B Nucleoporin NUP120; pro 45.1 1.4E+02 0.0049 34.8 12.8 133 543-680 835-991 (1139)
270 3ax2_A Mitochondrial import re 37.3 76 0.0026 22.8 5.4 30 434-463 21-50 (73)
271 2ijq_A Hypothetical protein; s 36.9 1.7E+02 0.0058 24.8 8.5 59 399-458 39-103 (161)
272 1om2_A Protein (mitochondrial 36.7 58 0.002 24.8 4.9 37 256-292 24-60 (95)
273 3bu8_A Telomeric repeat-bindin 34.7 60 0.002 28.9 5.4 24 113-136 121-144 (235)
274 4gq2_M Nucleoporin NUP120; bet 32.9 4.5E+02 0.016 29.8 14.1 98 542-657 832-930 (950)
275 2w2u_A Hypothetical P60 katani 32.8 40 0.0014 25.0 3.5 18 636-653 31-48 (83)
276 3kae_A CDC27, possible protein 32.5 2.4E+02 0.0082 24.2 18.5 64 399-462 69-146 (242)
277 2v6y_A AAA family ATPase, P60 30.7 45 0.0015 24.7 3.5 18 636-653 23-40 (83)
278 3lvg_A Clathrin heavy chain 1; 29.3 19 0.00064 37.1 1.5 84 398-497 235-320 (624)
279 2wpv_A GET4, UPF0363 protein Y 26.8 4.2E+02 0.014 25.3 16.8 155 511-689 28-195 (312)
280 2w2u_A Hypothetical P60 katani 23.8 73 0.0025 23.6 3.5 30 159-200 17-46 (83)
281 3kae_A CDC27, possible protein 22.2 3.8E+02 0.013 23.0 14.0 31 554-584 116-146 (242)
282 4a5x_A MITD1, MIT domain-conta 20.3 99 0.0034 23.0 3.7 19 635-653 27-45 (86)
No 1
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=7.5e-37 Score=335.06 Aligned_cols=437 Identities=18% Similarity=0.344 Sum_probs=329.4
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERS 98 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 98 (703)
.|+++|+.+|.+.++|..++.....+++++|+.+|+++++.+|.+..+|..|+.++... |++++|+.+|+++
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--------~~~~~a~~~~~ra 72 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA--------KNYDKVEKLFQRC 72 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHH
T ss_pred ChhhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Confidence 37899999999999999999974489999999999999999999999999999998764 8899999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHh-ccChHHHHH----HHHHHHHhCCcc-cccccHHHHHHHHHh---------cCChHHHHH
Q psy6461 99 LVFMHKMPRIWLDYGRFLMD-QHKITQTRH----VFDRALRALPIT-QHHRVWPLYLSFVKS---------HAVPETAVR 163 (703)
Q Consensus 99 l~~~p~~~~~~~~~~~~~~~-~~~~~~A~~----~~~~al~~~p~~-~~~~~~~~~~~~~~~---------~~~~~~A~~ 163 (703)
+...| ++.+|..|+.+... .|+++.|+. +|++++...+.+ ....+|..++.++.. .|+++.|+.
T Consensus 73 l~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~ 151 (530)
T 2ooe_A 73 LMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR 151 (530)
T ss_dssp TTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred HhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence 99999 78899999986654 577776665 899998864421 347899999999865 455566666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhH
Q psy6461 164 VFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGG 243 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (703)
+|+++++ .|.+.. .
T Consensus 152 ~y~~al~-~P~~~~------------------------------------~----------------------------- 165 (530)
T 2ooe_A 152 VYQRGCV-NPMINI------------------------------------E----------------------------- 165 (530)
T ss_dssp HHHHHTT-SCCTTH------------------------------------H-----------------------------
T ss_pred HHHHHHh-chhhhH------------------------------------H-----------------------------
Confidence 6666666 343310 0
Q ss_pred hhhhccchhhHHHHHHHHHHH-------------hCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q psy6461 244 LRRYTDQLGHLWNSLADYYIR-------------SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEI 310 (703)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~ 310 (703)
..|..++.+... .+++..|+.+|+..-.
T Consensus 166 ---------~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~------------------------------ 206 (530)
T 2ooe_A 166 ---------QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET------------------------------ 206 (530)
T ss_dssp ---------HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHH------------------------------
T ss_pred ---------HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHH------------------------------
Confidence 112212111111 1122222222221000
Q ss_pred hhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccC--
Q psy6461 311 AENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAV-- 388 (703)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-- 388 (703)
....+++++..++|....
T Consensus 207 ------------------------------------------------------------~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 207 ------------------------------------------------------------VMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp ------------------------------------------------------------HHHHCCSSSCCCCCC--CCH
T ss_pred ------------------------------------------------------------HHHHhccccccCCCCCChhH
Confidence 000000011011221000
Q ss_pred CchhHHHHHHHHHHHHc----CCh----HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-------cCCHH------
Q psy6461 389 GKLHTLWIEFGKFYEVN----DQL----EDARLIFDKATLVPYTKVEDLATVWCEWAELELR-------AGQEE------ 447 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~----~~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~------ 447 (703)
.....+|..+..+.... ++. ++++.+|++++..+|.++ .+|+.++.++.+ .|+++
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~----~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 01245777777666543 232 478899999999999998 999999999886 68876
Q ss_pred -HHHHHHHHHhc-CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 448 -AALRLMARATA-TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 448 -~A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+|+.+|++|++ .+|++ ..+|..++.++...|++
T Consensus 303 ~~A~~~~~~Al~~~~p~~-----------------~~l~~~~~~~~~~~g~~---------------------------- 337 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKN-----------------MLLYFAYADYEESRMKY---------------------------- 337 (530)
T ss_dssp HHHHHHHHHHTTTTCSSC-----------------HHHHHHHHHHHHHTTCH----------------------------
T ss_pred HHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHhcCCH----------------------------
Confidence 99999999997 78874 89999999999887775
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 605 (703)
++|+.+|+++++..|.+. ..+|+.++.++.+.|++++|+.+|++|++..|......+..+++.+. ..|+.+
T Consensus 338 -------~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~-~~~~~~ 408 (530)
T 2ooe_A 338 -------EKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKS 408 (530)
T ss_dssp -------HHHHHHHHHHHHSSSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH-HTCCHH
T ss_pred -------HHHHHHHHHHhCccccCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH-HcCChh
Confidence 999999999999999873 25999999999999999999999999999988764444444444333 478999
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC--CCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 606 KTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICD--PRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
+|+.+|+++++.+|+++. +|..|+.++.+.|+.++|+.+|++|++..+ |+....+|..|..|+..+|+.+++.++.
T Consensus 409 ~A~~~~e~al~~~p~~~~--~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHHTTCHH--HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHH--HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999876 999999999999999999999999998743 3345779999999999999999999998
Q ss_pred HHHHHH
Q psy6461 684 RIKRSV 689 (703)
Q Consensus 684 ~~~~~~ 689 (703)
+.+...
T Consensus 487 ~r~~~~ 492 (530)
T 2ooe_A 487 KRRFTA 492 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655553
No 2
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=4e-37 Score=337.69 Aligned_cols=464 Identities=11% Similarity=0.175 Sum_probs=321.5
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchh---HHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPS---YEDVNN 93 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~A~~ 93 (703)
..||+.|..||.|.+.|..|++... .++++.++.+|++++..+|.+..+|..|+.++... +. ++.++.
T Consensus 53 ~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~--------~~~~~~~~v~~ 124 (679)
T 4e6h_A 53 GKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK--------MEELDAAVIEP 124 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC----------CCCHHHHHH
T ss_pred HHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh--------CCcchHHHHHH
Confidence 5899999999999999999999888 88999999999999999999999999999986542 55 899999
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHhccCh--------HHHHHHHHHHHHhCCc-c-cccccHHHHHHHHHhc------
Q psy6461 94 TFERSLVFMH--KMPRIWLDYGRFLMDQHKI--------TQTRHVFDRALRALPI-T-QHHRVWPLYLSFVKSH------ 155 (703)
Q Consensus 94 ~~~~al~~~p--~~~~~~~~~~~~~~~~~~~--------~~A~~~~~~al~~~p~-~-~~~~~~~~~~~~~~~~------ 155 (703)
+|++|+...| .++.+|..|+.+....++. +.++++|++||...+. + ..+.+|..|+.|+...
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999999984 6889999999988776553 4566999999986443 1 3467999999997642
Q ss_pred ---CChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccc
Q psy6461 156 ---AVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIR 232 (703)
Q Consensus 156 ---~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~ 232 (703)
++.+.++++|++++.. |... ...+|..|..+......
T Consensus 205 eeq~~~~~~R~iy~raL~i-P~~~------------------------------------~~~~w~~Y~~fe~~~~~--- 244 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ-PMDC------------------------------------LESMWQRYTQWEQDVNQ--- 244 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS-CCSS------------------------------------HHHHHHHHHHHHHHHCT---
T ss_pred HHHhHHHHHHHHHHHHHhC-ccHH------------------------------------HHHHHHHHHHHHHhcCc---
Confidence 2234455555555532 2221 00111111111110000
Q ss_pred cccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6461 233 SLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312 (703)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 312 (703)
.....+ +.....+++.|+..|...-..
T Consensus 245 -~~a~~~---------------------~~e~~~~y~~Ar~~~~e~~~~------------------------------- 271 (679)
T 4e6h_A 245 -LTARRH---------------------IGELSAQYMNARSLYQDWLNI------------------------------- 271 (679)
T ss_dssp -TTHHHH---------------------HHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred -chHHHH---------------------HHHhhHHHHHHHHHHHHHHHH-------------------------------
Confidence 000000 000001112222222110000
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhc-CCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCc-cCCc
Q psy6461 313 NDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQ-NPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKL-AVGK 390 (703)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~ 390 (703)
.. .+.. .|.... . .....+|+.. ....
T Consensus 272 -------------------~~------------~l~r~~p~~~~-------------~-------~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 272 -------------------TK------------GLKRNLPITLN-------------Q-------ATESNLPKPNEYDVQ 300 (679)
T ss_dssp -------------------TT------------TCCCCCCSSST-------------T-------CCTTTSCCTTCCCHH
T ss_pred -------------------HH------------hHhhccccccc-------------c-------chhccCCCCchhHHH
Confidence 00 0000 010000 0 0000001100 0012
Q ss_pred hhHHHHHHHHHHHHcC-------ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHhcCCCC
Q psy6461 391 LHTLWIEFGKFYEVND-------QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAAL-RLMARATATPAR 462 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~p~ 462 (703)
...+|..|+.+....+ ..++.+.+|++|+..+|.++ .+|+.|+.++.+.|+.++|+ .+|++|+..+|.
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~----~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~ 376 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP----EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN 376 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH----HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC
Confidence 3578999998877654 24567789999999999887 99999999999999998996 999999999997
Q ss_pred CcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy6461 463 PVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQC 542 (703)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~a 542 (703)
. ..+|..|+.+++..|++ ++|+++|+++
T Consensus 377 s-----------------~~Lwl~~a~~ee~~~~~-----------------------------------e~aR~iyek~ 404 (679)
T 4e6h_A 377 S-----------------AVLAFSLSEQYELNTKI-----------------------------------PEIETTILSC 404 (679)
T ss_dssp C-----------------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHH
T ss_pred C-----------------HHHHHHHHHHHHHhCCH-----------------------------------HHHHHHHHHH
Confidence 4 78999999999887775 8888888888
Q ss_pred HHhC-----------CCc---------chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhc
Q psy6461 543 LEAC-----------PPR---------YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIY 602 (703)
Q Consensus 543 l~~~-----------p~~---------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 602 (703)
+... |.+ ..+.+|+.++.++.+.|+.+.|+++|++|++..|.. ...+|..++.++...+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhC
Confidence 8752 431 114589999999999999999999999999873321 1346667777776654
Q ss_pred -CchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-CCChHhHHHHHHHHHHcCCHHHHH
Q psy6461 603 -GIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP-RVTAGFWAAWKSFEITHGNEDTMR 680 (703)
Q Consensus 603 -~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~ 680 (703)
+.+.|+.+|+++++.+|+++. +|+.|++++.+.|+.++||.+|++|++..++ +....+|..|.+||..+|+.+.++
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~--~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGE--YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchH--HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 489999999999999998766 8999999999999999999999999998652 336889999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy6461 681 EMLRIKRSVQAQYN 694 (703)
Q Consensus 681 ~~~~~~~~~~~~~~ 694 (703)
++. .|.+..-|+
T Consensus 562 ~v~--~R~~~~~P~ 573 (679)
T 4e6h_A 562 TLE--KRFFEKFPE 573 (679)
T ss_dssp HHH--HHHHHHSTT
T ss_pred HHH--HHHHHhCCC
Confidence 998 444444444
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-33 Score=313.01 Aligned_cols=481 Identities=10% Similarity=0.025 Sum_probs=360.2
Q ss_pred CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHH
Q psy6461 29 FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPR 107 (703)
Q Consensus 29 ~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 107 (703)
.+...|..++..+. .|++++|..+|++++...|++ ..|..++..+... |++++|...|++++.. |.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~-~~~~~ 151 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCT--------GDYARAKCLLTKEDLY-NRSSA 151 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHT--------TCHHHHHHHHHHTCGG-GTCHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHc--------CcHHHHHHHHHHHhcc-ccchh
Confidence 56788999998888 999999999999999999955 6677777776553 8999999999998765 77899
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHhCCcc-----------------cccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 108 IWLDYGRFLMDQHKITQTRHVFDRALRALPIT-----------------QHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 108 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
+|..++.++...|++++|+.+|++. .|.. ....+|..++..+.+.|++++|+..|+++++
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999963 4431 1367899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHH-hcCCHHHHHHHH-----HHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHh
Q psy6461 171 LFPEDAEDYIEYLS-SIERLDEAAVKL-----AYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244 (703)
Q Consensus 171 ~~p~~~~~~~~~~~-~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (703)
.+|++...+..+.. ............ ..+...+.. .....|...+ ...-..-....+..+++.++
T Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~---~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 229 VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA------FLRSLYMLKL---NKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH------HHHHHHHTTS---CTTTTHHHHHHHHHHHHTST
T ss_pred hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH------HHHHHHHHHH---HHHcCcchHHHHHHHHHHhh
Confidence 99999887654431 111111111111 111000000 0000000000 00000000001122222222
Q ss_pred hhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHH
Q psy6461 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIEL 324 (703)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (703)
.. + ....+|..++..|.+.|++++|..+|++++...|....
T Consensus 300 ~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------------------------- 340 (597)
T 2xpi_A 300 GL-E-KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD------------------------------------- 340 (597)
T ss_dssp TG-G-GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT-------------------------------------
T ss_pred cC-C-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH-------------------------------------
Confidence 22 1 33567888888888888888888888888876654321
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHH
Q psy6461 325 ELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFY 402 (703)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 402 (703)
.|..++.++ .|+.++|...|++++... | ....+|..++..+
T Consensus 341 -------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 341 -------------------------------VYPLHLASLHESGEKNKLYLISNDLVDRH-P-----EKAVTWLAVGIYY 383 (597)
T ss_dssp -------------------------------THHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-----TSHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c-----ccHHHHHHHHHHH
Confidence 111111111 188888999999988653 3 3467889999999
Q ss_pred HHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHH
Q psy6461 403 EVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIK 482 (703)
Q Consensus 403 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 482 (703)
...|++++|+.+|+++++..|.++ ..|..++.++.+.|++++|+.+|++++...|++ ..
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~ 442 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFG----PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-----------------HL 442 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC-----------------SH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----------------hH
Confidence 999999999999999999888887 889999999999999999999999999988874 67
Q ss_pred HHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 483 LWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLE 562 (703)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 562 (703)
.|..++.++...|++ ++|+++|+++++..|.+ +..|..++.++
T Consensus 443 ~~~~l~~~~~~~g~~-----------------------------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 485 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNI-----------------------------------LLANEYLQSSYALFQYD--PLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHTCH-----------------------------------HHHHHHHHHHHHHCCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Confidence 788888887777665 99999999999999998 67899999999
Q ss_pred HHcCChHHHHHHHHHHhhccCc---ch--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 563 EEHGLARHAMAVYERATGAVLP---EE--MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL 637 (703)
Q Consensus 563 ~~~g~~~~A~~~~~~al~~~p~---~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 637 (703)
.+.|++++|..+|+++++..|. ++ ...+|...+..+...|++++|..+|+++++..|+++. +|..++.++.+.
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~ 563 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN--VHTAIALVYLHK 563 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH--HHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHh
Confidence 9999999999999999988432 11 1568888888888999999999999999999998765 899999999999
Q ss_pred CCHHHHHHHHHHHhcccCCCCChHhHHHHHHH
Q psy6461 638 GEIDRARAIYAHCSQICDPRVTAGFWAAWKSF 669 (703)
Q Consensus 638 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 669 (703)
|++++|...|++++++. |+ ++..+..++..
T Consensus 564 g~~~~A~~~~~~~l~~~-p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 564 KIPGLAITHLHESLAIS-PN-EIMASDLLKRA 593 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TT-CHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcC-CC-ChHHHHHHHHH
Confidence 99999999999999994 44 46666666543
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.3e-32 Score=287.28 Aligned_cols=374 Identities=14% Similarity=0.170 Sum_probs=274.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.|++++|...|+++++.+|++...|..++...... |++++|...++++++.+|.++.+|..++.++...|++
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC--------RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 78888888888888888888888887777766543 7788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNK 202 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 202 (703)
++|...|+++++..| .....|..++..+...|++++|+..|+++++.+|++.
T Consensus 84 ~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------- 135 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-------------------------- 135 (388)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT--------------------------
T ss_pred HHHHHHHHHHHHcCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------------------------
Confidence 888888888888888 3466777778888788888888888888887777663
Q ss_pred cccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc
Q psy6461 203 ESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282 (703)
Q Consensus 203 ~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 282 (703)
..+..+|.++...|++++|...|++++...
T Consensus 136 --------------------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 136 --------------------------------------------------CVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp --------------------------------------------------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred --------------------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 356666777777777777777777766654
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh
Q psy6461 283 TTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR 362 (703)
Q Consensus 283 ~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 362 (703)
|+.. ..|..++.
T Consensus 166 p~~~--------------------------------------------------------------------~~~~~l~~ 177 (388)
T 1w3b_A 166 PNFA--------------------------------------------------------------------VAWSNLGC 177 (388)
T ss_dssp TTCH--------------------------------------------------------------------HHHHHHHH
T ss_pred CCCH--------------------------------------------------------------------HHHHHHHH
Confidence 4321 11111111
Q ss_pred hh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH
Q psy6461 363 LF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE 440 (703)
Q Consensus 363 ~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 440 (703)
++ .|+.++|+..|++++.. .| ....+|..+|.++...|++++|+..|++++...|.++ .++..++.++
T Consensus 178 ~~~~~g~~~~A~~~~~~al~~-~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~ 247 (388)
T 1w3b_A 178 VFNAQGEIWLAIHHFEKAVTL-DP-----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA----VVHGNLACVY 247 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH----HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH----HHHHHHHHHH
Confidence 11 16666677777776665 23 2456777788888888888888888888888877776 7777888888
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHH
Q psy6461 441 LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYL 520 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~ 520 (703)
...|++++|+..|+++++..|++ +..|..++.++...|++
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~l~~~~~~~g~~----------------------- 287 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQPHF-----------------PDAYCNLANALKEKGSV----------------------- 287 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSC-----------------HHHHHHHHHHHHHHSCH-----------------------
T ss_pred HHcCCHHHHHHHHHHHHhhCCCC-----------------HHHHHHHHHHHHHcCCH-----------------------
Confidence 88888888888888888887774 66777777776666654
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE 600 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 600 (703)
++|...|+++++..|++ +..|..++.++...|++++|+..|+++++..|++ ...+...+..+..
T Consensus 288 ------------~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 288 ------------AEAEDCYNTALRLCPTH--ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQ 351 (388)
T ss_dssp ------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC--HHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHH
Confidence 78888888888888877 5677788888888888888888888888877766 3455555666666
Q ss_pred hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q psy6461 601 IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG 638 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 638 (703)
.|++++|...|+++++..|+++. ++..++.++...|
T Consensus 352 ~g~~~~A~~~~~~a~~~~p~~~~--a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRISPTFAD--AYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCCHHHHHHHHHHHTTCTTCHH--HHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhhCCCCHH--HHHhHHHHHHHcc
Confidence 77777777777777777777654 6666666666555
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=1.5e-32 Score=300.99 Aligned_cols=424 Identities=17% Similarity=0.266 Sum_probs=322.7
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHH-
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYED- 90 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~- 90 (703)
+.+.+..|+++++.+|.+...|..++..+. .|++++|+.+|+++++.+| ++++|..|+.+..... |+++.
T Consensus 28 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~-------~~~~~a 99 (530)
T 2ooe_A 28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETK-------GKLPSY 99 (530)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHT-------TTSTTH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHc-------cchhhH
Confidence 344567999999999999999999999998 9999999999999999999 7999999998765542 33444
Q ss_pred ---HHHHHHHHHHh---cCCCHHHHHHHHHHHHh---------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhc
Q psy6461 91 ---VNNTFERSLVF---MHKMPRIWLDYGRFLMD---------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH 155 (703)
Q Consensus 91 ---A~~~~~~al~~---~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 155 (703)
++.+|++++.. +|.++.+|..++.++.. +|+++.|+.+|+++++ .|......+|..+..++...
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhh
Confidence 45699999876 46788999999999876 7899999999999999 78654567898888887555
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcccccccc
Q psy6461 156 AVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLN 235 (703)
Q Consensus 156 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~ 235 (703)
|. ..+..++. ...+++..|+.++....
T Consensus 179 ~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~----------------------------------- 205 (530)
T 2ooe_A 179 NI-HLAKKMIE-----------------DRSRDYMNARRVAKEYE----------------------------------- 205 (530)
T ss_dssp CH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHH-----------------------------------
T ss_pred ch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHH-----------------------------------
Confidence 42 11111111 12234455554443321
Q ss_pred HHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhh-cCCc----ccHHHHHHHHHHHHHHHHHHHHHHh
Q psy6461 236 VDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQT-VTTV----RDFTQVFDAYAQFEELSLNKRMEEI 310 (703)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~~~~----~~~~~l~~~~~~~e~~~~~~~~~~~ 310 (703)
.....+++++.. .|+. .....+|..+..++...
T Consensus 206 ----------------------------------~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~-------- 243 (530)
T 2ooe_A 206 ----------------------------------TVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN-------- 243 (530)
T ss_dssp ----------------------------------HHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC--------
T ss_pred ----------------------------------HHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC--------
Confidence 001111111110 1110 01123454454443320
Q ss_pred hhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCc----hhHHHHHHHHHHhcCCCc
Q psy6461 311 AENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKP----LDIIRTYTEAVKTVDPKL 386 (703)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~a~~~~~~a~~~~~~~~ 386 (703)
|.. .++. ..++..|++++...|
T Consensus 244 ----------------------------------------~~~-----------~~~~~~~~~~a~~~y~~al~~~p--- 269 (530)
T 2ooe_A 244 ----------------------------------------PLR-----------TEDQTLITKRVMFAYEQCLLVLG--- 269 (530)
T ss_dssp ----------------------------------------SSC-----------CSCSHHHHHHHHHHHHHHHHHHT---
T ss_pred ----------------------------------------Ccc-----------CCcchhHHHHHHHHHHHHHHhCC---
Confidence 000 0122 357788999998743
Q ss_pred cCCchhHHHHHHHHHHHH-------cCChH-------HHHHHHHHhhc-cCCCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q psy6461 387 AVGKLHTLWIEFGKFYEV-------NDQLE-------DARLIFDKATL-VPYTKVEDLATVWCEWAELELRAGQEEAALR 451 (703)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 451 (703)
..+.+|+.++.++.. .|+++ +|+.+|+++++ ..|.++ .+|+.++.++.+.|++++|+.
T Consensus 270 ---~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~----~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 270 ---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM----LLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH----HHHHHHHHHHHHTTCHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHhcCCHHHHHH
Confidence 368899999999986 68887 99999999997 788887 999999999999999999999
Q ss_pred HHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCC
Q psy6461 452 LMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTK 531 (703)
Q Consensus 452 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~ 531 (703)
+|+++++.+|.+ ...+|..++.++.+.|+.
T Consensus 343 ~~~~al~~~p~~----------------~~~~~~~~~~~~~~~~~~---------------------------------- 372 (530)
T 2ooe_A 343 IYNRLLAIEDID----------------PTLVYIQYMKFARRAEGI---------------------------------- 372 (530)
T ss_dssp HHHHHHHSSSSC----------------HHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHhCccccC----------------chHHHHHHHHHHHHhcCH----------------------------------
Confidence 999999999874 136899998888776654
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHH-HHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLE-EEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQI 610 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 610 (703)
++|+++|+++++..|.. ...++..+.++ ...|++++|+.+|+++++.+|++ ..+|..|+.++...|+.++|+.+
T Consensus 373 -~~A~~~~~~Al~~~~~~--~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~--~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 373 -KSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp -HHHHHHHHHHHTCTTCC--THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTTTCHHHHHHH
T ss_pred -HHHHHHHHHHHhccCCc--hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC--HHHHHHHHHHHHhCCCHhhHHHH
Confidence 89999999999998876 35677766664 35899999999999999999987 57899999999999999999999
Q ss_pred HHHHHHhCCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 611 YERAIESLPEEPT--RQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 611 ~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
|+++++..|.++. ..+|..|+.++...|+.+.+..+++++++..|.
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9999999876542 558999999999999999999999999998753
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-31 Score=282.13 Aligned_cols=373 Identities=17% Similarity=0.178 Sum_probs=328.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|++++|...|+++++..|+++.++..++.++...|++++|...++++++..| .....|..++..+...|++++|+..|
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 45788999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhh
Q psy6461 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLR 245 (703)
Q Consensus 166 ~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (703)
+++++.+|++.
T Consensus 91 ~~al~~~p~~~--------------------------------------------------------------------- 101 (388)
T 1w3b_A 91 RHALRLKPDFI--------------------------------------------------------------------- 101 (388)
T ss_dssp HHHHHHCTTCH---------------------------------------------------------------------
T ss_pred HHHHHcCcchH---------------------------------------------------------------------
Confidence 99998888763
Q ss_pred hhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHH
Q psy6461 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELE 325 (703)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (703)
..|..+|..+...|++++|...|++++...|+...
T Consensus 102 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------------------------------- 136 (388)
T 1w3b_A 102 -------DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC-------------------------------------- 136 (388)
T ss_dssp -------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH--------------------------------------
T ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--------------------------------------
Confidence 46888899999999999999999998887665331
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH
Q psy6461 326 LRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE 403 (703)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 403 (703)
.|..++.++ .|++++|+..|++++... | ....+|..++.++.
T Consensus 137 ------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p-----~~~~~~~~l~~~~~ 180 (388)
T 1w3b_A 137 ------------------------------VRSDLGNLLKALGRLEEAKACYLKAIETQ-P-----NFAVAWSNLGCVFN 180 (388)
T ss_dssp ------------------------------HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHHHH
Confidence 111122211 289999999999999873 3 35779999999999
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHH
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL 483 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
..|++++|+..|+++++.+|.++ ..|..++.++...|++++|...|++++...|++ ..+
T Consensus 181 ~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~ 239 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTLDPNFL----DAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-----------------AVV 239 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-----------------HHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-----------------HHH
Confidence 99999999999999999999987 899999999999999999999999999999985 788
Q ss_pred HHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q psy6461 484 WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEE 563 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 563 (703)
|..++.++...|++ ++|...|+++++..|++ +.+|..++.++.
T Consensus 240 ~~~l~~~~~~~g~~-----------------------------------~~A~~~~~~al~~~p~~--~~~~~~l~~~~~ 282 (388)
T 1w3b_A 240 HGNLACVYYEQGLI-----------------------------------DLAIDTYRRAIELQPHF--PDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHTCSSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHhhCCCC--HHHHHHHHHHHH
Confidence 88888888777665 99999999999999998 679999999999
Q ss_pred HcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHH
Q psy6461 564 EHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRA 643 (703)
Q Consensus 564 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A 643 (703)
..|++++|+..|+++++..|.+ ...+...+..+...|++++|...|+++++..|+++. .+..++.++.+.|++++|
T Consensus 283 ~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLCPTH--ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA--AHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH--HHHHHHHHHHTTTCCHHH
T ss_pred HcCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999987 456677777788899999999999999999999765 899999999999999999
Q ss_pred HHHHHHHhcccCCCCChHhHHHHHHHHHHcC
Q psy6461 644 RAIYAHCSQICDPRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 644 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g 674 (703)
+..|++++++. |+ ....|..++......|
T Consensus 359 ~~~~~~a~~~~-p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 359 LMHYKEAIRIS-PT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHTTC-TT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhC-CC-CHHHHHhHHHHHHHcc
Confidence 99999999984 44 5788888877766655
No 7
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=6e-32 Score=296.70 Aligned_cols=450 Identities=14% Similarity=0.161 Sum_probs=319.0
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCc---hhHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcccCCCCch
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAP---KAIINTIYERSLKELP--GSYKLWYNYLKLRRKQVKGKVITDP 86 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~---~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~~~~~ 86 (703)
+...+..||+++..+|.+...|..|+..+. .+. ++.++.+|+|++...| .++++|..|+.+............+
T Consensus 82 ~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~ 161 (679)
T 4e6h_A 82 WKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEE 161 (679)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccch
Confidence 344567999999999999999999999998 777 9999999999999995 7999999999987653111000012
Q ss_pred hHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHh---------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH
Q psy6461 87 SYEDVNNTFERSLVF----MHKMPRIWLDYGRFLMD---------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153 (703)
Q Consensus 87 ~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 153 (703)
..+.++++|++|+.. +|.+..+|..|+.++.. +++++.+|++|+++|. .|..+...+|..|..|+.
T Consensus 162 ~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~ 240 (679)
T 4e6h_A 162 ARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQ 240 (679)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHH
Confidence 345678999999986 56688999999999864 4568899999999997 787677899999999986
Q ss_pred hcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhccccccc---ccCCchhhhHHHHHHHHhcCccc
Q psy6461 154 SHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVS---KHGKSNHQLWNELCEMISQNPDK 230 (703)
Q Consensus 154 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~w~~~~~~l~~~~~~ 230 (703)
..+.. .+.+.+.. ....|+.|+..+.+.-....-+. +....... ....|..
T Consensus 241 ~~~~~-~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--------~~~~p~~ 294 (679)
T 4e6h_A 241 DVNQL-TARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--------ESNLPKP 294 (679)
T ss_dssp HHCTT-THHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--------TTTSCCT
T ss_pred hcCcc-hHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccccccch--------hccCCCC
Confidence 64322 23333221 11233344444433211000000 00000000 0000000
Q ss_pred cccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC-------chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Q psy6461 231 IRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG-------LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL 303 (703)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~ 303 (703)
.... ......|..+++++...+ ..++.+.+|++++..+|.. ..+|..|+.++...
T Consensus 295 -~~~~-------------~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~---~~lW~~ya~~~~~~- 356 (679)
T 4e6h_A 295 -NEYD-------------VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA---PEIWFNMANYQGEK- 356 (679)
T ss_dssp -TCCC-------------HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHH-
T ss_pred -chhH-------------HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhc-
Confidence 0000 011246777776655432 1234456666666655532 23444444443321
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHH-HHHHHHHHhc
Q psy6461 304 NKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDII-RTYTEAVKTV 382 (703)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~-~~~~~a~~~~ 382 (703)
|+.++|+ ++|++|+..+
T Consensus 357 --------------------------------------------------------------~~~~~a~r~il~rAi~~~ 374 (679)
T 4e6h_A 357 --------------------------------------------------------------NTDSTVITKYLKLGQQCI 374 (679)
T ss_dssp --------------------------------------------------------------SCCTTHHHHHHHHHHHHC
T ss_pred --------------------------------------------------------------CcHHHHHHHHHHHHHHhC
Confidence 7777886 9999999876
Q ss_pred CCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-----------CCCc-------chHHHHHHHHHHHHHHcC
Q psy6461 383 DPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP-----------YTKV-------EDLATVWCEWAELELRAG 444 (703)
Q Consensus 383 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------~~~~-------~~~~~~~~~~~~~~~~~~ 444 (703)
|. +..+|+.++.+++..|++++|+.+|++++... |.+. .....+|+.++.++.+.|
T Consensus 375 P~------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 375 PN------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 43 56799999999999999999999999999752 3210 123478999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHH
Q psy6461 445 QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524 (703)
Q Consensus 445 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~ 524 (703)
+.+.|+.+|.+|++..|.. ...+|..++.++...+.
T Consensus 449 ~l~~AR~vf~~A~~~~~~~----------------~~~lyi~~A~lE~~~~~---------------------------- 484 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLV----------------TPDIYLENAYIEYHISK---------------------------- 484 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGS----------------CTHHHHHHHHHHHTTTS----------------------------
T ss_pred CHHHHHHHHHHHHHhcCCC----------------ChHHHHHHHHHHHHhCC----------------------------
Confidence 9999999999999883321 25778887777765432
Q ss_pred HHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc-chHHHHHHHHHHHHHHhcC
Q psy6461 525 SRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP-EEMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 525 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~ 603 (703)
+.++|+.+|+++++.+|++ +.+|+.|++++...|+.+.|+.+|++|+...|+ .....+|..|+.++.+.|+
T Consensus 485 ------d~e~Ar~ife~~Lk~~p~~--~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 485 ------DTKTACKVLELGLKYFATD--GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp ------CCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred ------CHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 3599999999999999998 679999999999999999999999999999883 3346799999999999999
Q ss_pred chHHHHHHHHHHHhCCCcchHHHH
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMC 627 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~ 627 (703)
.+.++.+.+++++.+|+++...++
T Consensus 557 ~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp SHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHH
Confidence 999999999999999998764333
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-31 Score=294.08 Aligned_cols=468 Identities=10% Similarity=-0.007 Sum_probs=361.5
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc
Q psy6461 62 GSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH 141 (703)
Q Consensus 62 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 141 (703)
.+...|...+...... |++++|..+|++++...|+ ...|..++.++...|++++|+.+|++++.. | .+
T Consensus 82 ~~~~~~~~~~~~~~~~--------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~ 149 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQ--------QQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-N--RS 149 (597)
T ss_dssp CHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-G--TC
T ss_pred HHHHHHHHHHHHHHHc--------cCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-c--cc
Confidence 5677888888776553 8899999999999999994 578899999999999999999999999764 4 34
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------------------HHHH---HHHHHhcCCHHHHHHHHHHh
Q psy6461 142 HRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED-------------------AEDY---IEYLSSIERLDEAAVKLAYI 199 (703)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------------------~~~~---~~~~~~~~~~~~A~~~~~~~ 199 (703)
..+|..++..+.+.|++++|+.+|++ ..|.. ...| +..+...|++++|+..|+++
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67899999999999999999999996 34443 3333 45568899999999999999
Q ss_pred hcccccccccCCchhhhHHHHHHHHhcCccccccccHHHH-HHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHH
Q psy6461 200 VNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAI-IRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEA 278 (703)
Q Consensus 200 ~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 278 (703)
+... +.....|..+..+......... .....+ +.......+.....++..++..|.+.|++++|+.+|+++
T Consensus 227 ~~~~-------p~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 227 LMVD-------AKCYEAFDQLVSNHLLTADEEW-DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHC-------TTCHHHHHHHHHTTCSCHHHHH-HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHhC-------chhhHHHHHHHHhhcccchhHH-HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 7432 2223333333322111110000 000000 011111111111223444566666667777777777665
Q ss_pred HhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHH
Q psy6461 279 IQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWH 358 (703)
Q Consensus 279 l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 358 (703)
+.. |.+...|.
T Consensus 299 ~~~---------------------------------------------------------------------~~~~~~~~ 309 (597)
T 2xpi_A 299 NGL---------------------------------------------------------------------EKSSDLLL 309 (597)
T ss_dssp TTG---------------------------------------------------------------------GGCHHHHH
T ss_pred hcC---------------------------------------------------------------------CchHHHHH
Confidence 543 23333444
Q ss_pred HHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q psy6461 359 KRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEW 436 (703)
Q Consensus 359 ~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (703)
.++..+ .|++++|+..|++++... | ....+|..++..+...|++++|..+|+++++..|.++ .+|..+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l 379 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEID-P-----YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA----VTWLAV 379 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH----HHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcC-c-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH----HHHHHH
Confidence 444332 289999999999998763 3 2355788999999999999999999999999888887 889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHH
Q psy6461 437 AELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIW 516 (703)
Q Consensus 437 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~ 516 (703)
+.++.+.|++++|+.+|+++++..|++ ...|..++.++...|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~g~~------------------- 423 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQF-----------------GPAWIGFAHSFAIEGEH------------------- 423 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHTCH-------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH-------------------
Confidence 999999999999999999999998884 78899998888887765
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHH
Q psy6461 517 NTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIK 596 (703)
Q Consensus 517 ~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 596 (703)
++|..+|+++++..|++ ...|..++.++...|++++|..+|+++++..|.+ ...|...+.
T Consensus 424 ----------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~ 483 (597)
T 2xpi_A 424 ----------------DQAISAYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD--PLLLNELGV 483 (597)
T ss_dssp ----------------HHHHHHHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC--HHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHH
Confidence 99999999999999988 5699999999999999999999999999999987 457888888
Q ss_pred HHHHhcCchHHHHHHHHHHHhCCC---cch--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 597 KAAEIYGIPKTRQIYERAIESLPE---EPT--RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 597 ~~~~~~~~~~A~~~~~~al~~~p~---~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
.+.+.|++++|..+|+++++..|+ ++. ..+|..++.++.+.|++++|...|+++++..| + +..+|..++..+.
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~-~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-N-DANVHTAIALVYL 561 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-C-CHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-C-ChHHHHHHHHHHH
Confidence 888999999999999999998421 232 45899999999999999999999999999854 3 5899999999999
Q ss_pred HcCCHHHHHHHHHHHHHH
Q psy6461 672 THGNEDTMREMLRIKRSV 689 (703)
Q Consensus 672 ~~g~~~~~~~~~~~~~~~ 689 (703)
..|+.++|.+.++.+..+
T Consensus 562 ~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999655544
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.6e-28 Score=269.78 Aligned_cols=440 Identities=12% Similarity=0.074 Sum_probs=327.9
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
..+.|...+..+. .|++++|...|+++++.+|.++..|..++..+... |++++|...|+++++.+|+++.+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~ 95 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST--------GDLEKVIEFTTKALEIKPDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCchHHH
Confidence 5678888898888 99999999999999999999999999999888765 89999999999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH------HHHHH
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE------DYIEY 182 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~~ 182 (703)
|..++.++...|++++|...|+ ++...|.. ...+ .......+....|+..+++++...|.... ..+..
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~--~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 169 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLS-VLSLNGDF--DGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC--ChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH
Confidence 9999999999999999999996 88888853 2222 22222334457899999999988776543 12222
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHH----
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSL---- 258 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 258 (703)
+....+.+.+...+...... .+. ....+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~-------~~~--------------------------------------~~~~~~~l~~~~ 204 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSNY-------DTA--------------------------------------YALLSDALQRLY 204 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCSS-------CSS--------------------------------------HHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHhhcccc-------ccH--------------------------------------HHHHHHHHHHHH
Confidence 33344444333332221100 000 00111111
Q ss_pred ----HHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH
Q psy6461 259 ----ADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDL 334 (703)
Q Consensus 259 ----~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (703)
+.+....|++++|..+|++++...|+... .+......
T Consensus 205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~------------------------------------ 245 (537)
T 3fp2_A 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDP---LRENAALA------------------------------------ 245 (537)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH---HHHHHHHH------------------------------------
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch---hhHHHHHH------------------------------------
Confidence 33444567889999999999988776432 11111100
Q ss_pred HhhhhhhhhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHH
Q psy6461 335 MERRLLLLNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDAR 412 (703)
Q Consensus 335 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 412 (703)
+..++. ...|++++|+..|++++... | . ..+|..+|.++...|++++|+
T Consensus 246 ----------------------~~~~g~~~~~~~~~~~A~~~~~~~~~~~-~-----~-~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 246 ----------------------LCYTGIFHFLKNNLLDAQVLLQESINLH-P-----T-PNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp ----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-----C-HHHHHHHHHHTCCSSCCHHHH
T ss_pred ----------------------HHHHHHHHHhcccHHHHHHHHHHHHhcC-C-----C-chHHHHHHHHHHHhcCHHHHH
Confidence 001111 11388999999999999873 3 2 678999999999999999999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHH
Q psy6461 413 LIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEE 492 (703)
Q Consensus 413 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (703)
..|+++++..|.++ .+|..++.++...|++++|...|++++...|++ ...|..++.++.
T Consensus 297 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~~~la~~~~ 355 (537)
T 3fp2_A 297 KFFQKAVDLNPEYP----PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-----------------VYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------SHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHH
Confidence 99999999999887 899999999999999999999999999999985 677888888887
Q ss_pred hcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHH
Q psy6461 493 SFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAM 572 (703)
Q Consensus 493 ~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 572 (703)
..|++ ++|...|+++++..|++ +.+|..+|.++...|++++|.
T Consensus 356 ~~g~~-----------------------------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 356 KQGKF-----------------------------------TESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HTTCH-----------------------------------HHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCH-----------------------------------HHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHH
Confidence 77665 99999999999999998 569999999999999999999
Q ss_pred HHHHHHhhccCcchHH----HHHHHHHHHHHHh----------cCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q psy6461 573 AVYERATGAVLPEEMF----EMFNIYIKKAAEI----------YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG 638 (703)
Q Consensus 573 ~~~~~al~~~p~~~~~----~~~~~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 638 (703)
..|++++...|.+... ..+......+... |++++|...|+++++..|+++. ++..++.++...|
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~l~~~~~~~g 476 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ--AKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhc
Confidence 9999999988765321 1222333444455 8999999999999999999875 8999999999999
Q ss_pred CHHHHHHHHHHHhcccCC
Q psy6461 639 EIDRARAIYAHCSQICDP 656 (703)
Q Consensus 639 ~~~~A~~~~~~a~~~~~~ 656 (703)
++++|+..|++++++.|.
T Consensus 477 ~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 477 KIDEAIELFEDSAILART 494 (537)
T ss_dssp CHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHhCCC
Confidence 999999999999999554
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.5e-28 Score=262.70 Aligned_cols=457 Identities=10% Similarity=0.048 Sum_probs=330.4
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
..+.|...+..+. .|++++|...|+++++.+| ++..|..++..+... |++++|...|+++++.+|+++.+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~ 75 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSV--------GDLKKVVEMSTKALELKPDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCSCCHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHH--------hhHHHHHHHHHHHhccChHHHHH
Confidence 3567888888777 8999999999999999999 688888888887665 88999999999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHH---HHHHHHHHHhhCCCCHHHH-----H
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPET---AVRVFRRYLKLFPEDAEDY-----I 180 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~~l~~~p~~~~~~-----~ 180 (703)
|..++.++...|++++|...|++++...|.+ ................... +...++.+... |...... .
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFN--DASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERK 152 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC--GGGTHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCChhhHHH
Confidence 9999999999999999999999999988842 2222222222111111111 11111111111 1111000 0
Q ss_pred HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHH
Q psy6461 181 EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLAD 260 (703)
Q Consensus 181 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (703)
...............+. .....+. .. .+. .......+...|.
T Consensus 153 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~-~~----------~~~--~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFG-------------------------IFKPELT-FA----------NYD--ESNEADKELMNGL 194 (514)
T ss_dssp ----CCCCHHHHHHHHT-------------------------TSCCCCC-CS----------SCC--SSCHHHHHHHHHH
T ss_pred hhccCCchhHHHHHHHh-------------------------hcCHHHH-HH----------Hhc--CCcHHHHHHHHHH
Confidence 00000000000000000 0000000 00 000 0122467888888
Q ss_pred HHHH---hCchHHHHHHHHHHHh-----h--cCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHH
Q psy6461 261 YYIR---SGLFERARDIYEEAIQ-----T--VTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLAR 330 (703)
Q Consensus 261 ~~~~---~~~~~~A~~~~~~~l~-----~--~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (703)
.+.. .|++++|...|++++. . .|+..
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 230 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE-------------------------------------------- 230 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH--------------------------------------------
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc--------------------------------------------
Confidence 7776 8999999999999988 3 22211
Q ss_pred HHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCCh
Q psy6461 331 LEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408 (703)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 408 (703)
..+|.+...|..++.++ .|++++|+..|++++... | . ..+|..+|.++...|++
T Consensus 231 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~-----~-~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 231 -----------------KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-P-----R-VNSYIYMALIMADRNDS 286 (514)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-C-----C-HHHHHHHHHHHHTSSCC
T ss_pred -----------------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-c-----c-HHHHHHHHHHHHHCCCH
Confidence 00122233333333322 389999999999999873 3 3 67899999999999999
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHH
Q psy6461 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYA 488 (703)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (703)
++|+..|+++++..|.++ .+|..++.++...|++++|+..|++++...|.+ ...+..++
T Consensus 287 ~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~l~ 345 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSNNS----SVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-----------------IFPYIQLA 345 (514)
T ss_dssp TTGGGHHHHHHTTCTTCT----HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-----------------SHHHHHHH
T ss_pred HHHHHHHHHHhhcCcCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-----------------HHHHHHHH
Confidence 999999999999999887 899999999999999999999999999999985 56777777
Q ss_pred HHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCh
Q psy6461 489 DLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLA 568 (703)
Q Consensus 489 ~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 568 (703)
.++...|++ ++|...|+++++..|++ +.+|..+|.++...|++
T Consensus 346 ~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 346 CLAYRENKF-----------------------------------DDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHTTTTTCH-----------------------------------HHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCH-----------------------------------HHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCH
Confidence 777666554 99999999999999998 56999999999999999
Q ss_pred HHHHHHHHHHhhccCcchH----HHHHHHHHHHHHH---hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHH
Q psy6461 569 RHAMAVYERATGAVLPEEM----FEMFNIYIKKAAE---IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEID 641 (703)
Q Consensus 569 ~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 641 (703)
++|...|++++...|.+.. ...+...+..+.. .|++++|...|+++++..|+++. .+..++.++.+.|+++
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ--AKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH--HHHHHHHHHHHhcCHH
Confidence 9999999999999887643 2366677777778 89999999999999999998765 8999999999999999
Q ss_pred HHHHHHHHHhcccCCCCChHhHHHH
Q psy6461 642 RARAIYAHCSQICDPRVTAGFWAAW 666 (703)
Q Consensus 642 ~A~~~~~~a~~~~~~~~~~~~~~~~ 666 (703)
+|...|++++++.|. ++..+..+
T Consensus 467 ~A~~~~~~a~~~~~~--~~~~~~~~ 489 (514)
T 2gw1_A 467 EAITLFEESADLART--MEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHCSS--HHHHHHHH
T ss_pred HHHHHHHHHHHhccc--cHHHHHHH
Confidence 999999999999543 46666554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=2e-27 Score=254.72 Aligned_cols=197 Identities=13% Similarity=0.063 Sum_probs=148.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHH---------
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEW--------- 436 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------- 436 (703)
|++++|+..|++++...+ ..+.+|..+|.++...|++++|+..|++++...|.+. ..+..+
T Consensus 191 g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKN------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK----RCFAHYKQVKKLNKL 260 (450)
T ss_dssp TCGGGGHHHHHHHHHHHC------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH----HHHHHHHHHHHHHHH
Confidence 666666666766666532 2456788889999999999999999999999888876 555544
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchH
Q psy6461 437 ---AELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIF 513 (703)
Q Consensus 437 ---~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~ 513 (703)
+..+...|++++|+..|++++...|++... ...++..++.++...|+
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------------~~~~~~~l~~~~~~~g~----------------- 310 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEY-------------TVRSKERICHCFSKDEK----------------- 310 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHH-------------HHHHHHHHHHHHHTTTC-----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHH-------------HHHHHHHHHHHHHHCCC-----------------
Confidence 888899999999999999999999874100 02356666666666555
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHH
Q psy6461 514 DIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNI 593 (703)
Q Consensus 514 ~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 593 (703)
+++|...++++++..|++ +.+|..++.++...|++++|...|+++++..|++........
T Consensus 311 ------------------~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 311 ------------------PVEAIRVCSEVLQMEPDN--VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp ------------------HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 499999999999999998 679999999999999999999999999999999854333222
Q ss_pred HHHHHHH----------hc-----CchHHHHHHHH-HHHhCCCcc
Q psy6461 594 YIKKAAE----------IY-----GIPKTRQIYER-AIESLPEEP 622 (703)
Q Consensus 594 ~~~~~~~----------~~-----~~~~A~~~~~~-al~~~p~~~ 622 (703)
.+....+ .| ..++++..|.+ +++.+|++.
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 2221111 12 44566777775 777777653
No 12
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.97 E-value=1.2e-28 Score=263.98 Aligned_cols=424 Identities=12% Similarity=0.066 Sum_probs=288.0
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
++..|..|++++...|. +++++++.+|+|++...| |+++|..|+++..... ...+.++
T Consensus 11 i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~-------~~~~~i~ 68 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVS-------QKKFKLY 68 (493)
T ss_dssp -CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC-----------CTH
T ss_pred hHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC-------chHHHHH
Confidence 66778889999998887 679999999999999999 9999999999987641 1235678
Q ss_pred HHHHHHHHh---cCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 93 NTFERSLVF---MHKMPRIWLDYGRFLMD----QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 93 ~~~~~al~~---~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
.+|++|+.. +|.++.+|..|+.++.. +++++.++++|++||+ .|..+...+|..|..++...+ ...+.+++
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~-~~~~~~~~ 146 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELN-KITGKKIV 146 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHC-HHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhc-cccHHHHH
Confidence 899999987 57899999999999763 5788999999999999 787677889999999976644 22232222
Q ss_pred HHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhh
Q psy6461 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLR 245 (703)
Q Consensus 166 ~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (703)
....
T Consensus 147 ~~~~---------------------------------------------------------------------------- 150 (493)
T 2uy1_A 147 GDTL---------------------------------------------------------------------------- 150 (493)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 2211
Q ss_pred hhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHH
Q psy6461 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELE 325 (703)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (703)
+.+..|+.+|+.+....+.. + ..+|..|..+|+..
T Consensus 151 --------------------~~y~~ar~~y~~~~~~~~~~-s-~~~W~~y~~~E~~~----------------------- 185 (493)
T 2uy1_A 151 --------------------PIFQSSFQRYQQIQPLIRGW-S-VKNAARLIDLEMEN----------------------- 185 (493)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTC-S-HHHHHHHHHHHHTC-----------------------
T ss_pred --------------------HHHHHHHHHHHHHHHHHhhc-c-HHHHHHHHHHHhcC-----------------------
Confidence 11222333333333221110 0 13555555554321
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHc
Q psy6461 326 LRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVN 405 (703)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 405 (703)
|..... .+....+..+|++++..++ ..+.+|+.|+.++...
T Consensus 186 -------------------------~~~~~~--------~~~~~Rv~~~ye~al~~~p------~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 186 -------------------------GMKLGG--------RPHESRMHFIHNYILDSFY------YAEEVYFFYSEYLIGI 226 (493)
T ss_dssp -------------------------TTCCCH--------HHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHT
T ss_pred -------------------------CccCcc--------hhhHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHc
Confidence 000000 0002346778999998753 3588999999999999
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHH
Q psy6461 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWS 485 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 485 (703)
|+.++|+.+|++|+.. |.+. .+|+.++.+. .. ++....+..+........ ....+ ......+|.
T Consensus 227 ~~~~~ar~i~erAi~~-P~~~----~l~~~y~~~~-e~---~~~~~~l~~~~~~~~~~~---~~~~~----~~~~~~lw~ 290 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM-SDGM----FLSLYYGLVM-DE---EAVYGDLKRKYSMGEAES---AEKVF----SKELDLLRI 290 (493)
T ss_dssp TCHHHHHHHHHHHHHH-CCSS----HHHHHHHHHT-TC---THHHHHHHHHTC-------------C----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-CCcH----HHHHHHHhhc-ch---hHHHHHHHHHHHhhccch---hhhhc----ccccHHHHH
Confidence 9999999999999999 9887 8898887762 11 111111111111111000 00000 000234455
Q ss_pred HHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 486 LYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 486 ~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 565 (703)
.|+.++.+.+ +.+.||.+|++| + .|.. ...+|+.+|.++...
T Consensus 291 ~y~~~~~r~~-----------------------------------~~~~AR~i~~~A-~-~~~~-~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 291 NHLNYVLKKR-----------------------------------GLELFRKLFIEL-G-NEGV-GPHVFIYCAFIEYYA 332 (493)
T ss_dssp HHHHHHHHHH-----------------------------------CHHHHHHHHHHH-T-TSCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----------------------------------CHHHHHHHHHHh-h-CCCC-ChHHHHHHHHHHHHH
Confidence 5554444333 359999999999 3 4542 256899999998877
Q ss_pred C-ChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHH
Q psy6461 566 G-LARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRAR 644 (703)
Q Consensus 566 g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 644 (703)
| +.+.|+++|+++++.+|++ ..+|..|++++...|+.+.||.+|+++. . ...+|..|+.++...|+.+.++
T Consensus 333 ~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~----k--~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE----K--TSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC----C--BHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH----H--HHHHHHHHHHHHHHCCCHHHHH
Confidence 7 5999999999999998876 4568889999999999999999999983 2 3459999999999999999999
Q ss_pred HHHHHHhcccC---CCCChHhHHHHHHHHHHcCCHHHHHHH
Q psy6461 645 AIYAHCSQICD---PRVTAGFWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 645 ~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~ 682 (703)
.+++++++... .+.+..+.+.|..|++.+|++++..+-
T Consensus 405 ~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~ 445 (493)
T 2uy1_A 405 ELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDS 445 (493)
T ss_dssp HHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHH
Confidence 99999986432 233566779999999999987766543
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=4.5e-27 Score=252.02 Aligned_cols=236 Identities=10% Similarity=0.015 Sum_probs=180.9
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|++++|+..|++++... | ....++..+|.++...|++++|+..|+++++.+|.++ .+|..++.++...|+
T Consensus 157 ~~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-V-----WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT----EAFYKISTLYYQLGD 226 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH----HHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhC-C-----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCC
Confidence 55555666666655542 2 2456788899999999999999999999999999887 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|+..|++++...|++ ...+..+..+.... .+...+..+.
T Consensus 227 ~~~A~~~~~~~~~~~p~~-----------------~~~~~~~~~~~~~~--------------------~~~~~~~~~~- 268 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDH-----------------KRCFAHYKQVKKLN--------------------KLIESAEELI- 268 (450)
T ss_dssp HHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHH--------------------HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHHHH--------------------HHHHHHHHHH-
Confidence 999999999999999985 45554442221100 0000000001
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcch--HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYA--KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 603 (703)
..|++++|...|+++++..|++.. ...+..++.++...|++++|+..+++++...|++ ..+|...+..+...|+
T Consensus 269 --~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 269 --RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN--VNALKDRAEAYLIEEM 344 (450)
T ss_dssp --HHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC
T ss_pred --HcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhcC
Confidence 135579999999999999999732 2478899999999999999999999999999987 4677778888888999
Q ss_pred chHHHHHHHHHHHhCCCcchHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HhcccC
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMCLKFAEM------------ETKLG-----EIDRARAIYAH-CSQICD 655 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~------------~~~~g-----~~~~A~~~~~~-a~~~~~ 655 (703)
+++|...|+++++..|+++. ++..++.+ +...| +.+++++.|++ +++..|
T Consensus 345 ~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQ--IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHH--HHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHhCcchHH--HHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999876 66666633 33345 56788999987 666643
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=4.7e-28 Score=265.99 Aligned_cols=454 Identities=10% Similarity=0.026 Sum_probs=332.8
Q ss_pred CHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccccc
Q psy6461 63 SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHH 142 (703)
Q Consensus 63 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 142 (703)
....|...+...... |++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++.+| .+.
T Consensus 24 ~a~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTA--------KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHT--------TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCH
T ss_pred HHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chH
Confidence 346666666665553 8899999999999999999999999999999999999999999999999999 458
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHH
Q psy6461 143 RVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCE 222 (703)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 222 (703)
.+|..++.++...|++++|+..|+ ++..+|+....++..+...+...+|...+..++...+-....
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~------------- 159 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ------------- 159 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------C-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc-------------
Confidence 889999999999999999999996 888999887777666666777788888888876421100000
Q ss_pred HHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHH
Q psy6461 223 MISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELS 302 (703)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~ 302 (703)
..|. ......+....+.+.+...+.+.....+. ...+......+....
T Consensus 160 ---~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 160 ---VLPS--------------------------NTSLASFFGIFDSHLEVSSVNTSSNYDTA---YALLSDALQRLYSAT 207 (537)
T ss_dssp ---CCCC--------------------------HHHHHHHHHTSCHHHHHHTSCCCCSSCSS---HHHHHHHHHHHHTCS
T ss_pred ---ccch--------------------------HhHHHHHHHhcChHHHHHHHhhccccccH---HHHHHHHHHHHHHhh
Confidence 0000 00111233344444444443332222221 111111111110000
Q ss_pred HHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhc
Q psy6461 303 LNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTV 382 (703)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 382 (703)
...+... .+++++|+..|++++...
T Consensus 208 -------------------------~~~~~~a------------------------------~~~~~~A~~~~~~~l~~~ 232 (537)
T 3fp2_A 208 -------------------------DEGYLVA------------------------------NDLLTKSTDMYHSLLSAN 232 (537)
T ss_dssp -------------------------HHHHHHH------------------------------HHHHHHHHHHHHHHHC--
T ss_pred -------------------------hhhhHHH------------------------------HHHHHHHHHHHHHHHHHC
Confidence 0000000 145667888888887763
Q ss_pred CCCcc-CCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q psy6461 383 DPKLA-VGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPA 461 (703)
Q Consensus 383 ~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 461 (703)
+.... ......++..+|.++...|++++|+..|+++++..|. + ..|..++.++...|++++|...|++++...|
T Consensus 233 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P----NSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H----HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c----hHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 22110 0112446788888999999999999999999999887 5 8899999999999999999999999999999
Q ss_pred CCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy6461 462 RPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQ 541 (703)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~ 541 (703)
++ ..+|..++.++...|++ ++|...|++
T Consensus 308 ~~-----------------~~~~~~l~~~~~~~~~~-----------------------------------~~A~~~~~~ 335 (537)
T 3fp2_A 308 EY-----------------PPTYYHRGQMYFILQDY-----------------------------------KNAKEDFQK 335 (537)
T ss_dssp TC-----------------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHH
T ss_pred CC-----------------HHHHHHHHHHHHhcCCH-----------------------------------HHHHHHHHH
Confidence 85 78888888888877765 999999999
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCc
Q psy6461 542 CLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 542 al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (703)
+++..|++ ...|..++.++...|++++|...|+++++..|.+. .++..++..+...|++++|...|+++++..|++
T Consensus 336 a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 336 AQSLNPEN--VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP--EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHCTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99999998 56899999999999999999999999999999884 466677778888999999999999999998765
Q ss_pred chH----HHHHHHHHHHHHc----------CCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6461 622 PTR----QMCLKFAEMETKL----------GEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKR 687 (703)
Q Consensus 622 ~~~----~~~~~~a~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 687 (703)
+.. ..+...+.++... |++++|+..|+++++..| + +...|..++......|+.++|.+.++.+-
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-R-SEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-C-CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 431 1355667888888 999999999999999954 4 58899999999999999999999987665
Q ss_pred HHH
Q psy6461 688 SVQ 690 (703)
Q Consensus 688 ~~~ 690 (703)
.+.
T Consensus 490 ~~~ 492 (537)
T 3fp2_A 490 ILA 492 (537)
T ss_dssp HHC
T ss_pred HhC
Confidence 554
No 15
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.96 E-value=3.6e-27 Score=252.48 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=178.9
Q ss_pred hHHHHHHHHHHHHcCC-------hHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q psy6461 392 HTLWIEFGKFYEVNDQ-------LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
..+|..|+.+....+. .+++..+|++++...|..+ .+|+.|+.++.+.|+.+.|+.+|++|+.. |.+
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~----~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~- 245 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE----EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG- 245 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-
Confidence 4688888888764321 4567899999999999887 99999999999999999999999999999 884
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
..+|..|+.+... ++ ++++..... . ....+.+ ..
T Consensus 246 ----------------~~l~~~y~~~~e~-~~--~~~~l~~~~------------~--------~~~~~~~------~~- 279 (493)
T 2uy1_A 246 ----------------MFLSLYYGLVMDE-EA--VYGDLKRKY------------S--------MGEAESA------EK- 279 (493)
T ss_dssp ----------------SHHHHHHHHHTTC-TH--HHHHHHHHT------------C------------------------
T ss_pred ----------------HHHHHHHHhhcch-hH--HHHHHHHHH------------H--------hhccchh------hh-
Confidence 6788887766221 11 111111100 0 0000000 00
Q ss_pred hCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCcch
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIY-GIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~ 623 (703)
.+...+..+|+.|+.++.+.|+.+.|+++|++| + .|.. ...+|..++.++...+ +.+.||.+|+++++..|+++.
T Consensus 280 -~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 280 -VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred -hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH
Confidence 111112479999999999999999999999999 4 3432 2457777777777666 599999999999999998765
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 624 RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
+|..|++++.+.|+.++||.+|+++.+ ...+|..|.+||..+|+.++++++++.+...-
T Consensus 356 --~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 356 --LKEEFFLFLLRIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999999999832 48899999999999999999999998777644
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.8e-26 Score=246.27 Aligned_cols=276 Identities=12% Similarity=0.078 Sum_probs=236.6
Q ss_pred CCcHHHHHHHHhh--h---cCCchhHHHHHHHHHHh----c--CCCcc--CCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 351 PHNVLEWHKRVRL--F---DGKPLDIIRTYTEAVKT----V--DPKLA--VGKLHTLWIEFGKFYEVNDQLEDARLIFDK 417 (703)
Q Consensus 351 p~~~~~~~~~~~~--~---~~~~~~a~~~~~~a~~~----~--~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 417 (703)
|.+...|...+.. . .|++++|+..|++++.. . .|... .+....+|..+|.++...|++++|...|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5567777776653 2 48899999999999982 1 12111 134578999999999999999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 418 ATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
+++..|. + .+|..++.++...|++++|...+++++...|.+ ..+|..++.++...|++
T Consensus 263 ~l~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 263 AIELFPR-V----NSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-----------------SSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHCCC-H----HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC-----------------THHHHHHHHHHHHTTCT
T ss_pred HHhhCcc-H----HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC-----------------HHHHHHHHHHHHHhCCH
Confidence 9999887 5 899999999999999999999999999999985 67788888887776665
Q ss_pred hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 498 KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYER 577 (703)
Q Consensus 498 ~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 577 (703)
++|...|+++++..|.+ ...+..++.++...|++++|...|++
T Consensus 321 -----------------------------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 321 -----------------------------------DQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp -----------------------------------THHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999998 56999999999999999999999999
Q ss_pred HhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch----HHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q psy6461 578 ATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT----RQMCLKFAEMETK---LGEIDRARAIYAHC 650 (703)
Q Consensus 578 al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~---~g~~~~A~~~~~~a 650 (703)
+++..|.+. ..+..++..+...|++++|...|+++++..|+++. ...+..++.++.. .|++++|...|+++
T Consensus 364 ~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 364 AKRKFPEAP--EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHSTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHcccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 999999874 46667777778899999999999999999888753 3378999999999 99999999999999
Q ss_pred hcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy6461 651 SQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSV 689 (703)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 689 (703)
++.. |+ ....|..++......|+.++|.+.++.+-.+
T Consensus 442 ~~~~-~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 442 SKLD-PR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHC-TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9985 44 5889999999999999999999998665554
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=2.6e-24 Score=222.63 Aligned_cols=336 Identities=11% Similarity=0.048 Sum_probs=241.0
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLS 184 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 184 (703)
++..|...|..+...|++++|...|+++++..| .++.+|..++.++...|++++|+..|+++++.+|++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-------- 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT-------- 71 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc--------
Confidence 467888999999999999999999999999999 4578888889998899999999999999988877763
Q ss_pred hcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHH
Q psy6461 185 SIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIR 264 (703)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (703)
.+|..+|.++..
T Consensus 72 --------------------------------------------------------------------~~~~~l~~~~~~ 83 (359)
T 3ieg_A 72 --------------------------------------------------------------------AARLQRGHLLLK 83 (359)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred --------------------------------------------------------------------hHHHHHHHHHHH
Confidence 467888888999
Q ss_pred hCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhh
Q psy6461 265 SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNS 344 (703)
Q Consensus 265 ~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (703)
.|++++|...|++++...|...+....+.......
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------------------------- 118 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD--------------------------------------------- 118 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH---------------------------------------------
Confidence 99999999999999987762111111111110000
Q ss_pred hhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 345 VLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 345 ~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
....+...|..+...|++++|+..|+++++..|.
T Consensus 119 ----------------------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 152 (359)
T 3ieg_A 119 ----------------------------------------------EMQRLRSQALDAFDGADYTAAITFLDKILEVCVW 152 (359)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 0112344455666667777777777777766666
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHh
Q psy6461 425 KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGI 504 (703)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al 504 (703)
++ .++..++.++...|++++|...+++++...|.+ ...|..++.++...|++
T Consensus 153 ~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~la~~~~~~~~~------- 204 (359)
T 3ieg_A 153 DA----ELRELRAECFIKEGEPRKAISDLKAASKLKSDN-----------------TEAFYKISTLYYQLGDH------- 204 (359)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC-----------------HHHHHHHHHHHHHHTCH-------
T ss_pred ch----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH-------
Confidence 65 666667777667777777777777777766663 55666666666555543
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHH------------HHHHHHHHHcCChHHHH
Q psy6461 505 ALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLY------------LLYAKLEEEHGLARHAM 572 (703)
Q Consensus 505 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------------~~~a~~~~~~g~~~~A~ 572 (703)
++|...|+++++..|++ ...+ +..|.++...|++++|.
T Consensus 205 ----------------------------~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 254 (359)
T 3ieg_A 205 ----------------------------ELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254 (359)
T ss_dssp ----------------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------HHHHHHHHHHHhhCccc--hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66677777777766665 2233 23466777888888888
Q ss_pred HHHHHHhhccCcchHH--HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 573 AVYERATGAVLPEEMF--EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 573 ~~~~~al~~~p~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
..++++++..|.+... .++......+...|++++|...|+++++..|+++. +|..++.++...|++++|...|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN--ALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888876432 23444556666788888888888888888888765 7888888888899999999999999
Q ss_pred hcccCCCCChHhHHHHHHHHH
Q psy6461 651 SQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~ 671 (703)
+++. |+ +..++..+.....
T Consensus 333 ~~~~-p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 333 QEHN-EN-DQQIREGLEKAQR 351 (359)
T ss_dssp HTTC-TT-CHHHHHHHHHHHH
T ss_pred HhcC-CC-ChHHHHHHHHHHH
Confidence 8884 44 4667766665544
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=2.3e-24 Score=223.06 Aligned_cols=347 Identities=9% Similarity=-0.012 Sum_probs=268.6
Q ss_pred CHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccccc
Q psy6461 63 SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHH 142 (703)
Q Consensus 63 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 142 (703)
+++.|...+...... |++++|...|+++++..|+++.+|..++.++...|++++|...|+++++..|. ..
T Consensus 2 ~~~~~~~~~~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA--------GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--FT 71 (359)
T ss_dssp HHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CH
T ss_pred cHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cc
Confidence 466777777776654 89999999999999999999999999999999999999999999999999994 57
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHH
Q psy6461 143 RVWPLYLSFVKSHAVPETAVRVFRRYLKLFP---EDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNE 219 (703)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~ 219 (703)
.+|..++.++...|++++|+..|+++++.+| ++...+..+..
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------------------- 116 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK----------------------------------- 116 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-----------------------------------
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH-----------------------------------
Confidence 8899999999999999999999999999998 55432221110
Q ss_pred HHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q psy6461 220 LCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE 299 (703)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e 299 (703)
+ .....+..+|..+...|++++|...|++++...|
T Consensus 117 ---~--------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------------- 151 (359)
T 3ieg_A 117 ---A--------------------------DEMQRLRSQALDAFDGADYTAAITFLDKILEVCV---------------- 151 (359)
T ss_dssp ---H--------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred ---H--------------------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------------
Confidence 0 0012344455555566666666666555444322
Q ss_pred HHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHH
Q psy6461 300 ELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAV 379 (703)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~ 379 (703)
T Consensus 152 -------------------------------------------------------------------------------- 151 (359)
T 3ieg_A 152 -------------------------------------------------------------------------------- 151 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy6461 380 KTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 459 (703)
..+.++..+|.++...|++++|+..|+++++..|.++ ..|..++.++...|++++|...|+++++.
T Consensus 152 ----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 152 ----------WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT----EAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1345677888888999999999999999999999887 88999999999999999999999999999
Q ss_pred CCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy6461 460 PARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLF 539 (703)
Q Consensus 460 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~ 539 (703)
.|++ ...|..+..+......+ . ........+++++|...|
T Consensus 218 ~~~~-----------------~~~~~~~~~~~~~~~~~--------------------~---~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 218 DQDH-----------------KRCFAHYKQVKKLNKLI--------------------E---SAEELIRDGRYTDATSKY 257 (359)
T ss_dssp CTTC-----------------HHHHHHHHHHHHHHHHH--------------------H---HHHHHHHTTCHHHHHHHH
T ss_pred Cccc-----------------hHHHHHHHHHHHHHHHH--------------------H---HHHHHHHcCCHHHHHHHH
Confidence 9885 45554443321110000 0 000011246679999999
Q ss_pred HHHHHhCCCcchH--HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh
Q psy6461 540 EQCLEACPPRYAK--TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES 617 (703)
Q Consensus 540 ~~al~~~p~~~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (703)
+++++..|++... .++..+|.++...|++++|...|+++++..|.+ ..++...+..+...|++++|...|+++++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN--VNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999997321 357788999999999999999999999999987 457777788888899999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHc
Q psy6461 618 LPEEPTRQMCLKFAEMETKL 637 (703)
Q Consensus 618 ~p~~~~~~~~~~~a~~~~~~ 637 (703)
.|+++. ++..++.+....
T Consensus 336 ~p~~~~--~~~~l~~~~~~~ 353 (359)
T 3ieg_A 336 NENDQQ--IREGLEKAQRLL 353 (359)
T ss_dssp CTTCHH--HHHHHHHHHHHH
T ss_pred CCCChH--HHHHHHHHHHHH
Confidence 999876 666666655443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=6.2e-23 Score=209.66 Aligned_cols=304 Identities=10% Similarity=0.036 Sum_probs=233.9
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.....+...|.+.+.+...+.... .|++++|...|+++++.+|.+...+..++...... |++++|...+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~ 81 (330)
T 3hym_B 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL--------NKANELFYLSHK 81 (330)
T ss_dssp ----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHH--------TCHHHHHHHHHH
T ss_pred hhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHh--------hhHHHHHHHHHH
Confidence 344667778889999999998888 99999999999999999999999998888776654 889999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQH-KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
+++..|+++.+|..++.++...| ++++|...|+++++..| .....|..++.++...|++++|+..|+++++..|.+.
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 159 (330)
T 3hym_B 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK--TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH 159 (330)
T ss_dssp HHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT--TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS
T ss_pred HHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH
Confidence 99999999999999999999999 99999999999999999 4578899999999999999999999999998887764
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHH
Q psy6461 177 EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWN 256 (703)
Q Consensus 177 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (703)
. .+.
T Consensus 160 ~----------------------------------------------------------------------------~~~ 163 (330)
T 3hym_B 160 L----------------------------------------------------------------------------PML 163 (330)
T ss_dssp H----------------------------------------------------------------------------HHH
T ss_pred H----------------------------------------------------------------------------HHH
Confidence 2 344
Q ss_pred HHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHh
Q psy6461 257 SLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLME 336 (703)
Q Consensus 257 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (703)
.+|..+...|++++|...|++++...|...
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------------------------------------- 193 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIAPEDP-------------------------------------------------- 193 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCH--------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCCh--------------------------------------------------
Confidence 455666666666666666666655544321
Q ss_pred hhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCc---cCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 337 RRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKL---AVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 337 ~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
..|..++.+ ..|++++|+..|++++...+... ..+..+.+|..+|.++...|++++|
T Consensus 194 ------------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 194 ------------------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp ------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 111111111 11556666666666665532111 1133467899999999999999999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHH
Q psy6461 412 RLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLE 491 (703)
Q Consensus 412 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (703)
+..|+++++..|.++ .+|..++.++...|++++|...|+++++..|++ ...+..++..+
T Consensus 256 ~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQNA----STYSAIGYIHSLMGNFENAVDYFHTALGLRRDD-----------------TFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHhhCccch----HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc-----------------hHHHHHHHHHH
Confidence 999999999999987 899999999999999999999999999999985 77888888766
Q ss_pred -HhcCCh
Q psy6461 492 -ESFGTF 497 (703)
Q Consensus 492 -~~~~~~ 497 (703)
...|+.
T Consensus 315 ~~~~g~~ 321 (330)
T 3hym_B 315 EMYIGDS 321 (330)
T ss_dssp HTTTTC-
T ss_pred HHHhCch
Confidence 455553
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=6.3e-23 Score=221.23 Aligned_cols=385 Identities=12% Similarity=0.063 Sum_probs=237.7
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKE---------LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSL 99 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~---------~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 99 (703)
....+..++..+. .|++++|++.|++|++. +|.....|..++..+... |++++|...|++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~--------g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM--------GRLSDVQIYVDKVK 121 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHH
Confidence 3456677887777 99999999999999986 677778888888776654 89999999999999
Q ss_pred Hhc--------CCCHHHHHHHHHHHHh--ccChHHHHHHHHHHHHhCCcccccccHHHHHHHH---HhcCChHHHHHHHH
Q psy6461 100 VFM--------HKMPRIWLDYGRFLMD--QHKITQTRHVFDRALRALPITQHHRVWPLYLSFV---KSHAVPETAVRVFR 166 (703)
Q Consensus 100 ~~~--------p~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~~~~~~~A~~~~~ 166 (703)
+.. +..+.++...+..+.. .+++++|...|+++++.+| .++.++..++... ...++.++|+..|+
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p--~~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP--KNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 874 3456777777766554 4578999999999999999 4577777776553 34577788999999
Q ss_pred HHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhh
Q psy6461 167 RYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRR 246 (703)
Q Consensus 167 ~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (703)
++++.+|++...+..+.
T Consensus 200 ~al~l~p~~~~~~~~l~--------------------------------------------------------------- 216 (472)
T 4g1t_A 200 QAIRLNPDNQYLKVLLA--------------------------------------------------------------- 216 (472)
T ss_dssp HHHHHCSSCHHHHHHHH---------------------------------------------------------------
T ss_pred HHhhcCCcchHHHHHHH---------------------------------------------------------------
Confidence 99999988864332211
Q ss_pred hccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHH
Q psy6461 247 YTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326 (703)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (703)
..++.++...+++++|...|++++...|...
T Consensus 217 ---------~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~---------------------------------------- 247 (472)
T 4g1t_A 217 ---------LKLHKMREEGEEEGEGEKLVEEALEKAPGVT---------------------------------------- 247 (472)
T ss_dssp ---------HHHHHCC------CHHHHHHHHHHHHCSSCH----------------------------------------
T ss_pred ---------HHHHHHHhhhhHHHHHHHHHHHHHHhCccHH----------------------------------------
Confidence 1111112223444455555555444333211
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH
Q psy6461 327 RLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV 404 (703)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 404 (703)
..|..++.++ .|+.++|+..|++++... | ....++..+|.+|..
T Consensus 248 ----------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p-----~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 248 ----------------------------DVLRSAAKFYRRKDEPDKAIELLKKALEYI-P-----NNAYLHCQIGCCYRA 293 (472)
T ss_dssp ----------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T-----TCHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHcCchHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHH
Confidence 0000000000 133344444444444331 1 123445555554432
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLW 484 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
.+....+... ...+......+.++.|...|++++...|.. ...+
T Consensus 294 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~ 337 (472)
T 4g1t_A 294 KVFQVMNLRE-------------------NGMYGKRKLLELIGHAVAHLKKADEANDNL-----------------FRVC 337 (472)
T ss_dssp HHHHHHHC-------------------------CHHHHHHHHHHHHHHHHHHHHHCTTT-----------------CCCH
T ss_pred HHHHhhhHHH-------------------HHHHHHHHHHhhHHHHHHHHHHHhhcCCch-----------------hhhh
Confidence 2111100000 000001111234677888888888888874 4556
Q ss_pred HHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch-HHHHHHHHHHH-
Q psy6461 485 SLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA-KTLYLLYAKLE- 562 (703)
Q Consensus 485 ~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~a~~~- 562 (703)
...+.++...|++ ++|...|+++++..|++.. ..++..++.+.
T Consensus 338 ~~lg~~~~~~~~~-----------------------------------~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 338 SILASLHALADQY-----------------------------------EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp HHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhccH-----------------------------------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 6677776666654 9999999999999887632 23566777653
Q ss_pred HHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH
Q psy6461 563 EEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDR 642 (703)
Q Consensus 563 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 642 (703)
...|++++|+..|+++++..|++... .+....+..+++++++.+|+++. .|..++.++...|++++
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~------------~~~~~~l~~~~~~~l~~~p~~~~--~~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREK------------EKMKDKLQKIAKMRLSKNGADSE--ALHVLAFLQELNEKMQQ 448 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHH------------HHHHHHHHHHHHHHHHHCC-CTT--HHHHHHHHHHHHHHCC-
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHH------------HHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHH
Confidence 46789999999999999999986311 12334567788999999999877 89999999999999999
Q ss_pred HHHHHHHHhcccC
Q psy6461 643 ARAIYAHCSQICD 655 (703)
Q Consensus 643 A~~~~~~a~~~~~ 655 (703)
|+..|++|++..+
T Consensus 449 A~~~y~kALe~~~ 461 (472)
T 4g1t_A 449 ADEDSERGLESGS 461 (472)
T ss_dssp -------------
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999843
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.7e-22 Score=204.96 Aligned_cols=299 Identities=11% Similarity=0.100 Sum_probs=215.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 96 ERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 96 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
...+...|+++.++...+..+...|++++|..+|+++++..|. +...+..++.++...|++++|+..++++++.+|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 3555667888888999999999999999999999999999984 46777777788888888999999998888877766
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHH
Q psy6461 176 AEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLW 255 (703)
Q Consensus 176 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (703)
. .+|
T Consensus 90 ~----------------------------------------------------------------------------~~~ 93 (330)
T 3hym_B 90 P----------------------------------------------------------------------------VSW 93 (330)
T ss_dssp T----------------------------------------------------------------------------HHH
T ss_pred H----------------------------------------------------------------------------HHH
Confidence 3 467
Q ss_pred HHHHHHHHHhC-chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH
Q psy6461 256 NSLADYYIRSG-LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDL 334 (703)
Q Consensus 256 ~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (703)
..+|..+...| ++++|...|++++...|.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------------------------------- 123 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKT-------------------------------------------------- 123 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTT--------------------------------------------------
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCc--------------------------------------------------
Confidence 77788888888 788888888776654332
Q ss_pred HhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHH
Q psy6461 335 MERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLI 414 (703)
Q Consensus 335 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 414 (703)
.+.+|..+|.++...|++++|+..
T Consensus 124 --------------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 124 --------------------------------------------------------YGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp --------------------------------------------------------CTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --------------------------------------------------------cHHHHHHHHHHHHHccCHHHHHHH
Confidence 123466667777777788888888
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhc
Q psy6461 415 FDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESF 494 (703)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (703)
|+++++..|.+. ..+..++.++...|++++|...+++++...|++ ..+|..++.++...
T Consensus 148 ~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----------------~~~~~~l~~~~~~~ 206 (330)
T 3hym_B 148 YFTAAQLMKGCH----LPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-----------------PFVMHEVGVVAFQN 206 (330)
T ss_dssp HHHHHHHTTTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-----------------HHHHHHHHHHHHHT
T ss_pred HHHHHHhccccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-----------------hHHHHHHHHHHHHc
Confidence 888887777766 667777777778888888888888888887774 66777777776666
Q ss_pred CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhC---------CCcchHHHHHHHHHHHHHc
Q psy6461 495 GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC---------PPRYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 495 ~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~~~~a~~~~~~ 565 (703)
|++ ++|...|+++++.. |.. ..+|..+|.++...
T Consensus 207 ~~~-----------------------------------~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~ 249 (330)
T 3hym_B 207 GEW-----------------------------------KTAEKWFLDALEKIKAIGNEVTVDKW--EPLLNNLGHVCRKL 249 (330)
T ss_dssp TCH-----------------------------------HHHHHHHHHHHHHHTTTSCSCTTTTC--CHHHHHHHHHHHHT
T ss_pred ccH-----------------------------------HHHHHHHHHHHHHhhhccccccccHH--HHHHHHHHHHHHHh
Confidence 554 77788888877765 333 35788888888888
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHH-HHcCCH
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEME-TKLGEI 640 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~-~~~g~~ 640 (703)
|++++|+..|+++++..|.+. ..+......+...|++++|...|+++++..|+++. .+..++..+ ...|+.
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNA--STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF--SVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH--HHHHHHHHHHTTTTC-
T ss_pred cCHHHHHHHHHHHHhhCccch--HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH--HHHHHHHHHHHHhCch
Confidence 888888888888887777653 34555555555667777777777777777776654 566666544 344443
No 22
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=1e-22 Score=205.94 Aligned_cols=236 Identities=16% Similarity=0.295 Sum_probs=203.5
Q ss_pred hhHHHHHHHHHHHHc----CCh----HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-------cCCH-------HH
Q psy6461 391 LHTLWIEFGKFYEVN----DQL----EDARLIFDKATLVPYTKVEDLATVWCEWAELELR-------AGQE-------EA 448 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~----~~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~ 448 (703)
...+|..|+.+.... ++. ++|+.+|++++..+|.++ .+|+.++.++.. .|++ ++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 82 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 82 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhchhhhhccchhhcccchHH
Confidence 456888888887754 233 789999999999999998 999999999864 4775 99
Q ss_pred HHHHHHHHhc-CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHh
Q psy6461 449 ALRLMARATA-TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527 (703)
Q Consensus 449 A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~ 527 (703)
|+.+|++|+. .+|++ ..+|..++.++...|++
T Consensus 83 A~~~~~rAl~~~~p~~-----------------~~~~~~~~~~~~~~~~~------------------------------ 115 (308)
T 2ond_A 83 AANIYERAISTLLKKN-----------------MLLYFAYADYEESRMKY------------------------------ 115 (308)
T ss_dssp HHHHHHHHHTTTTTTC-----------------HHHHHHHHHHHHHTTCH------------------------------
T ss_pred HHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHhcCCH------------------------------
Confidence 9999999999 68884 78999999999887765
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHH-HHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH-hcCch
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKT-LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE-IYGIP 605 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~ 605 (703)
++|+.+|+++++..|.+ +. +|..++.++.+.|++++|+.+|+++++..|.+ ..+|..++.++.. .|+++
T Consensus 116 -----~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 116 -----EKVHSIYNRLLAIEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp -----HHHHHHHHHHHTSSSSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--THHHHHHHHHHHHTSCCHH
T ss_pred -----HHHHHHHHHHHhccccC--ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHcCCHH
Confidence 99999999999999987 44 89999999999999999999999999998876 3456666666544 58999
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--CCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 606 KTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC--DPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
+|+.+|+++++.+|+++. +|..++.++.+.|++++|+.+|++|++.+ +|+....+|..|+.++...|+.+.+..++
T Consensus 187 ~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999765 99999999999999999999999999963 55557899999999999999999999888
Q ss_pred HHHHH
Q psy6461 684 RIKRS 688 (703)
Q Consensus 684 ~~~~~ 688 (703)
+.+..
T Consensus 265 ~~a~~ 269 (308)
T 2ond_A 265 KRRFT 269 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.5e-21 Score=210.49 Aligned_cols=402 Identities=10% Similarity=-0.009 Sum_probs=262.9
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc-------cccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT-------QHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
...++..+|.++..+|++++|...|++|++..+.. .....|..++.++...|++++|+..|++++++.|...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~- 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS- 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc-
Confidence 35778888999999999999999999998863310 1234466677777778888888888777776543221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHH
Q psy6461 178 DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNS 257 (703)
Q Consensus 178 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (703)
.+..+ ..+.++..
T Consensus 129 -------------------------------------------------~~~~~------------------~~~~~~~~ 141 (472)
T 4g1t_A 129 -------------------------------------------------SPYRI------------------ESPELDCE 141 (472)
T ss_dssp -------------------------------------------------CSSCC------------------CCHHHHHH
T ss_pred -------------------------------------------------cccch------------------hhHHHHHH
Confidence 00000 11244555
Q ss_pred HHHHHHH--hCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHH
Q psy6461 258 LADYYIR--SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLM 335 (703)
Q Consensus 258 l~~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (703)
.|..+.. .+++++|+..|++++...|+...+ +..+...... +..
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~---~~~~~~~~~~-----------------------------l~~-- 187 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF---TSGLAIASYR-----------------------------LDN-- 187 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH---HHHHHHHHHH-----------------------------HHH--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHH-----------------------------hcC--
Confidence 5544444 457999999999999988764421 1111110000 000
Q ss_pred hhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH----HcCChHHH
Q psy6461 336 ERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE----VNDQLEDA 411 (703)
Q Consensus 336 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~A 411 (703)
.++.++|++.|++++... | ..+.++..++..+. ..|++++|
T Consensus 188 -----------------------------~~~~~~al~~~~~al~l~-p-----~~~~~~~~l~~~~~~~~~~~~~~~~a 232 (472)
T 4g1t_A 188 -----------------------------WPPSQNAIDPLRQAIRLN-P-----DNQYLKVLLALKLHKMREEGEEEGEG 232 (472)
T ss_dssp -----------------------------SCCCCCTHHHHHHHHHHC-S-----SCHHHHHHHHHHHHHCC------CHH
T ss_pred -----------------------------chHHHHHHHHHHHHhhcC-C-----cchHHHHHHHHHHHHHHhhhhHHHHH
Confidence 166778899999998873 3 24556666654443 56788999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHH
Q psy6461 412 RLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLE 491 (703)
Q Consensus 412 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (703)
...|++++...|.++ .++..++.++...|++++|...|+++++..|++ ..++...+.++
T Consensus 233 ~~~~~~al~~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~lg~~y 291 (472)
T 4g1t_A 233 EKLVEEALEKAPGVT----DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN-----------------AYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHHHCSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHhCccHH----HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHH
Confidence 999999999999887 889999999999999999999999999999985 67777777665
Q ss_pred HhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHH
Q psy6461 492 ESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHA 571 (703)
Q Consensus 492 ~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A 571 (703)
...+.. ........ ... ..... ...++|...|+++++.+|.+ ...+..+|.++...|++++|
T Consensus 292 ~~~~~~---~~~~~~~~-~~~-------~~~~~-----~~~~~A~~~~~~a~~~~~~~--~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 292 RAKVFQ---VMNLRENG-MYG-------KRKLL-----ELIGHAVAHLKKADEANDNL--FRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHH---HHHC-------C-------HHHHH-----HHHHHHHHHHHHHHHHCTTT--CCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHH---hhhHHHHH-HHH-------HHHHH-----hhHHHHHHHHHHHhhcCCch--hhhhhhHHHHHHHhccHHHH
Confidence 433211 00000000 000 00001 12488999999999999998 45899999999999999999
Q ss_pred HHHHHHHhhccCcchH-HHHHHHHHHHH-HHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 572 MAVYERATGAVLPEEM-FEMFNIYIKKA-AEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAH 649 (703)
Q Consensus 572 ~~~~~~al~~~p~~~~-~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (703)
+..|++++...|++.. ..++..+..+. ...|++++|...|+++++..|++... .+....+..++++
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~------------~~~~~~l~~~~~~ 421 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK------------EKMKDKLQKIAKM 421 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH------------HHHHHHHHHHHHH
Confidence 9999999999887642 23444454443 34688999999999999999987541 2234566778889
Q ss_pred HhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhc
Q psy6461 650 CSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQ 696 (703)
Q Consensus 650 a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 696 (703)
+++..|. ++..|..++.+....|+.++|.+.++++-.+....++.
T Consensus 422 ~l~~~p~--~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 422 RLSKNGA--DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHCC---CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 9988544 58899999999999999999999998887776665543
No 24
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=3.8e-22 Score=201.79 Aligned_cols=240 Identities=16% Similarity=0.257 Sum_probs=206.4
Q ss_pred CCcHHHHHHHHhhhcCC------c----hhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH-------cCCh-----
Q psy6461 351 PHNVLEWHKRVRLFDGK------P----LDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV-------NDQL----- 408 (703)
Q Consensus 351 p~~~~~~~~~~~~~~~~------~----~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~----- 408 (703)
|.....|..++.+...+ . .+|+..|++++...| .++.+|+.+|.++.. .|++
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p------~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~ 78 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG------HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 78 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHhchhhhhccchhhccc
Confidence 45667888888875432 2 578899999999743 468899999999874 4886
Q ss_pred --HHHHHHHHHhhc-cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHH-HH
Q psy6461 409 --EDARLIFDKATL-VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIK-LW 484 (703)
Q Consensus 409 --~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~-~~ 484 (703)
++|+.+|+++++ .+|.+. .+|..++.++.+.|++++|+.+|+++++..|.+ .. +|
T Consensus 79 ~~~~A~~~~~rAl~~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~ 137 (308)
T 2ond_A 79 FSDEAANIYERAISTLLKKNM----LLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-----------------PTLVY 137 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----------------THHHH
T ss_pred chHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC-----------------ccHHH
Confidence 999999999999 689887 899999999999999999999999999999975 44 89
Q ss_pred HHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q psy6461 485 SLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE 564 (703)
Q Consensus 485 ~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 564 (703)
..++.++.+.|++ ++|+.+|+++++..|.+ ..+|+.++.++..
T Consensus 138 ~~~~~~~~~~~~~-----------------------------------~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~ 180 (308)
T 2ond_A 138 IQYMKFARRAEGI-----------------------------------KSGRMIFKKAREDARTR--HHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHHHCH-----------------------------------HHHHHHHHHHHTSTTCC--THHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCH-----------------------------------HHHHHHHHHHHhcCCCC--HHHHHHHHHHHHH
Confidence 9999888877665 99999999999999987 5688888888665
Q ss_pred -cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHcCCH
Q psy6461 565 -HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES---LPEEPTRQMCLKFAEMETKLGEI 640 (703)
Q Consensus 565 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~a~~~~~~g~~ 640 (703)
.|++++|+.+|+++++.+|++ ..+|..++.++...|++++|+.+|+++++. .|++ ...+|..++.++.+.|+.
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~-~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK-SGEIWARFLAFESNIGDL 257 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG-CHHHHHHHHHHHHHHSCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHcCCH
Confidence 699999999999999999987 678999999999999999999999999996 3332 244999999999999999
Q ss_pred HHHHHHHHHHhcccCCC
Q psy6461 641 DRARAIYAHCSQICDPR 657 (703)
Q Consensus 641 ~~A~~~~~~a~~~~~~~ 657 (703)
+.|..+++++++..|.+
T Consensus 258 ~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 258 ASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcccc
Confidence 99999999999987654
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=4.1e-22 Score=207.14 Aligned_cols=206 Identities=12% Similarity=0.005 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLA------------TVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
.+|..+|.++...|++++|+..|++++...|.+..... ..+..++.++ ..|++++|+..|++++...
T Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~ 211 (368)
T 1fch_A 133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD 211 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC
Confidence 34555666666666666666666666666665541100 0111233333 6667777777777777776
Q ss_pred CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy6461 461 ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE 540 (703)
Q Consensus 461 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~ 540 (703)
|... ...++..++.++...|++ ++|+..|+
T Consensus 212 p~~~---------------~~~~~~~l~~~~~~~g~~-----------------------------------~~A~~~~~ 241 (368)
T 1fch_A 212 PTSI---------------DPDVQCGLGVLFNLSGEY-----------------------------------DKAVDCFT 241 (368)
T ss_dssp TTSC---------------CHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHH
T ss_pred cCcc---------------cHHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHH
Confidence 6520 145666666666555543 77777777
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 541 QCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 541 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
++++..|++ +.+|..+|.++...|++++|+..|++++...|.+ ...+...+..+...|++++|...|+++++..|+
T Consensus 242 ~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 242 AALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY--IRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 777777766 4567777777777777777777777777777665 344555555666667777777777777777665
Q ss_pred cch---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 621 EPT---------RQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 621 ~~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+.. ..+|..++.++...|+.++|..+++++++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 510 236777777777777777777777666554
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=3.6e-22 Score=207.59 Aligned_cols=306 Identities=15% Similarity=0.164 Sum_probs=223.2
Q ss_pred hhHHHHHH-HHHHHHHhcCCCH----HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHH
Q psy6461 86 PSYEDVNN-TFERSLVFMHKMP----RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPET 160 (703)
Q Consensus 86 ~~~~~A~~-~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 160 (703)
|++++|.. .|++++...|+++ ..|...+.++...|++++|...|+++++..| .+..+|..++.++...|++++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCHHH
Confidence 56777777 8888887777664 4577888888888888888888888888888 446777778888888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHH
Q psy6461 161 AVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAII 240 (703)
Q Consensus 161 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 240 (703)
|+..|+++++.+|.+.
T Consensus 117 A~~~~~~al~~~~~~~---------------------------------------------------------------- 132 (368)
T 1fch_A 117 AISALRRCLELKPDNQ---------------------------------------------------------------- 132 (368)
T ss_dssp HHHHHHHHHHHCTTCH----------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCCH----------------------------------------------------------------
Confidence 8888888887776652
Q ss_pred HhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcc
Q psy6461 241 RGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEED 320 (703)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 320 (703)
.+|..+|.++...|++++|...|++++...|........ .
T Consensus 133 ------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~------------------------- 172 (368)
T 1fch_A 133 ------------TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP---A------------------------- 172 (368)
T ss_dssp ------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------------------------
T ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH---H-------------------------
Confidence 578888899999999999999999999877653311000 0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHH
Q psy6461 321 DIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGK 400 (703)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 400 (703)
+.. .... .+ ...+..++.
T Consensus 173 ---------------------------------------------~~~-------~~~~---~~-------~~~~~~~~~ 190 (368)
T 1fch_A 173 ---------------------------------------------EEG-------AGGA---GL-------GPSKRILGS 190 (368)
T ss_dssp ---------------------------------------------------------------------------CTTHH
T ss_pred ---------------------------------------------HHH-------hhhh---cc-------cHHHHHHHH
Confidence 000 0000 00 001122344
Q ss_pred HHHHcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHH
Q psy6461 401 FYEVNDQLEDARLIFDKATLVPYT--KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVY 478 (703)
Q Consensus 401 ~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 478 (703)
++ ..|++++|+..|+++++..|. ++ .++..++.++...|++++|+..|++++...|++
T Consensus 191 ~~-~~~~~~~A~~~~~~a~~~~p~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------- 250 (368)
T 1fch_A 191 LL-SDSLFLEVKELFLAAVRLDPTSIDP----DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND--------------- 250 (368)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHSTTSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------
T ss_pred Hh-hcccHHHHHHHHHHHHHhCcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 44 678888888888888888887 54 788888888888888999999998888888874
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 479 KSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLY 558 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 558 (703)
...|..++.++...|++ ++|+..|+++++..|++ ..+|..+
T Consensus 251 --~~~~~~l~~~~~~~g~~-----------------------------------~~A~~~~~~al~~~~~~--~~~~~~l 291 (368)
T 1fch_A 251 --YLLWNKLGATLANGNQS-----------------------------------EEAVAAYRRALELQPGY--IRSRYNL 291 (368)
T ss_dssp --HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCCCc--HHHHHHH
Confidence 67787877777776664 88888888888888887 5688888
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCcch---------HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC
Q psy6461 559 AKLEEEHGLARHAMAVYERATGAVLPEE---------MFEMFNIYIKKAAEIYGIPKTRQIYERAIESL 618 (703)
Q Consensus 559 a~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 618 (703)
|.++...|++++|+..|++++...|++. ...+|..+...+...|+.+.|..++.++++..
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 8888888999999999998888877651 14577777888888888888888888777653
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=7.1e-22 Score=205.24 Aligned_cols=305 Identities=13% Similarity=0.080 Sum_probs=227.3
Q ss_pred HHHHHHHHHhcCCCHH----HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHH
Q psy6461 92 NNTFERSLVFMHKMPR----IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR 167 (703)
Q Consensus 92 ~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 167 (703)
...+.++....|.++. .|+..|..+...|++++|...|+++++..| .+..+|..++.++...|++++|+..|++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455555555565554 489999999999999999999999999999 4578889999999899999999999999
Q ss_pred HHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhh
Q psy6461 168 YLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRY 247 (703)
Q Consensus 168 ~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (703)
+++.+|.+.
T Consensus 125 al~~~p~~~----------------------------------------------------------------------- 133 (365)
T 4eqf_A 125 CLELQPNNL----------------------------------------------------------------------- 133 (365)
T ss_dssp HHHHCTTCH-----------------------------------------------------------------------
T ss_pred HHhcCCCCH-----------------------------------------------------------------------
Confidence 998877763
Q ss_pred ccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHH
Q psy6461 248 TDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELR 327 (703)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (703)
.+|..+|.+|...|++++|...|++++...|+.... +
T Consensus 134 -----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~----------------------------------- 170 (365)
T 4eqf_A 134 -----KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL---V----------------------------------- 170 (365)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------------------------
T ss_pred -----HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHH---H-----------------------------------
Confidence 578888999999999999999999999865531110 0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCC
Q psy6461 328 LARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407 (703)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 407 (703)
..+ + ....++..++..+...|+
T Consensus 171 ------------------------------~~~-----~-----------------------~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 171 ------------------------------KNK-----K-----------------------GSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp ----------------------------------------------------------------------------CCHH
T ss_pred ------------------------------hhh-----c-----------------------cchHHHHHHHHHHhhhhh
Confidence 000 0 012234566778888999
Q ss_pred hHHHHHHHHHhhccCCC--CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHH
Q psy6461 408 LEDARLIFDKATLVPYT--KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWS 485 (703)
Q Consensus 408 ~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 485 (703)
+++|+..|+++++..|. ++ .+|..++.++...|++++|+..|+++++..|++ ..+|.
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~ 251 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDP----DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-----------------YSLWN 251 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------------HHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHH
Confidence 99999999999999888 65 789999999999999999999999999999884 78888
Q ss_pred HHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 486 LYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 486 ~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 565 (703)
.++.++...|++ ++|+..|+++++..|++ +.+|..+|.++...
T Consensus 252 ~l~~~~~~~g~~-----------------------------------~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 252 RLGATLANGDRS-----------------------------------EEAVEAYTRALEIQPGF--IRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH-----------------------------------HHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHC
Confidence 888888877665 89999999999999998 67899999999999
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARA 645 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 645 (703)
|++++|+..|++++...|++.... . . ..+. ....+|..++.++...|+.+.|..
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~-------------~-----------~-~~~~-~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQ-------------Q-----------V-PHPA-ISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccCCCc-------------c-----------c-chhh-hHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999999888752110 0 0 0000 012278888888888888888888
Q ss_pred HHHHHhccc
Q psy6461 646 IYAHCSQIC 654 (703)
Q Consensus 646 ~~~~a~~~~ 654 (703)
..++.+...
T Consensus 349 ~~~~~l~~~ 357 (365)
T 4eqf_A 349 ANLGDLDVL 357 (365)
T ss_dssp HHTTCCGGG
T ss_pred HHHhhHHHH
Confidence 888776654
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=5.6e-21 Score=198.48 Aligned_cols=266 Identities=12% Similarity=0.049 Sum_probs=224.8
Q ss_pred cHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHH
Q psy6461 353 NVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLA 430 (703)
Q Consensus 353 ~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 430 (703)
+...|+..+..+ .|++++|+..|++++... | ....+|..+|.++...|++++|+..|+++++.+|.++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---- 133 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-P-----GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL---- 133 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----
Confidence 445577777644 399999999999999874 3 3578999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHH----------HHHHHhcCChhHH
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLY----------ADLEESFGTFKAY 500 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 500 (703)
..|..++.++...|++++|+..|+++++..|+. ...+... +.++..
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~~~~~~~~~~~l~~~~~~------- 189 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKY-----------------KYLVKNKKGSPGLTRRMSKSPVD------- 189 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-----------------HCC-------------------C-------
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCccc-----------------hHHHhhhccchHHHHHHHHHHhh-------
Confidence 899999999999999999999999999998863 2223222 222222
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q psy6461 501 EKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATG 580 (703)
Q Consensus 501 e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 580 (703)
.|++++|+..|+++++..|+...+.+|..+|.++...|++++|+..|+++++
T Consensus 190 ----------------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 241 (365)
T 4eqf_A 190 ----------------------------SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241 (365)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------------hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456999999999999999932267999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC--
Q psy6461 581 AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV-- 658 (703)
Q Consensus 581 ~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~-- 658 (703)
..|.+ ..+|...+..+...|++++|+..|+++++..|+++. +|..++.++...|++++|+..|++++++.|...
T Consensus 242 ~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 242 VRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR--SRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred hCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 99987 457778888888899999999999999999999865 899999999999999999999999999864422
Q ss_pred --------ChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 659 --------TAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 659 --------~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
...+|..+.......|..+.++++.+
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 36899999999999999999988773
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.87 E-value=2.4e-20 Score=192.50 Aligned_cols=262 Identities=10% Similarity=0.062 Sum_probs=208.2
Q ss_pred HHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchh-HHHHHHHHHHHHH
Q psy6461 23 EILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPS-YEDVNNTFERSLV 100 (703)
Q Consensus 23 ~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~ 100 (703)
+|..+|.+..+|..++..+. .|++++|...|+++++.+|.+...|...+..+... |+ +++|...|+++++
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~--------g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--------QKDLHEEMNYITAIIE 160 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHHH
Confidence 46778888999999988888 89999999999999999999999999888877654 75 9999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 101 FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 101 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
.+|+++.+|..++.++...|++++|...|+++|+.+| .+..+|...+.++...|++++|+..|+++++.+|.+.
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~---- 234 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN---- 234 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----
Confidence 9999999999999999999999999999999999999 5588899999888889999999999999999888874
Q ss_pred HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHH
Q psy6461 181 EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLAD 260 (703)
Q Consensus 181 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (703)
.+|..+|.
T Consensus 235 ------------------------------------------------------------------------~a~~~lg~ 242 (382)
T 2h6f_A 235 ------------------------------------------------------------------------SVWNQRYF 242 (382)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 46777777
Q ss_pred HHHH-hCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhh
Q psy6461 261 YYIR-SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRL 339 (703)
Q Consensus 261 ~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (703)
++.. .|..++|+ +
T Consensus 243 ~l~~l~~~~~eA~--~---------------------------------------------------------------- 256 (382)
T 2h6f_A 243 VISNTTGYNDRAV--L---------------------------------------------------------------- 256 (382)
T ss_dssp HHHHTTCSCSHHH--H----------------------------------------------------------------
T ss_pred HHHHhcCcchHHH--H----------------------------------------------------------------
Confidence 7766 44435543 0
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC--ChHHHHHHHHH
Q psy6461 340 LLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND--QLEDARLIFDK 417 (703)
Q Consensus 340 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~ 417 (703)
+.++..|++++.. .| ....+|..++.++...| ++++|...+++
T Consensus 257 -----------------------------~~el~~~~~Al~l-~P-----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 257 -----------------------------EREVQYTLEMIKL-VP-----HNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp -----------------------------HHHHHHHHHHHHH-ST-----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHH-CC-----CCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 0112334444443 22 23556777777777666 68889888888
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-hcCCCCCcccccchhhHHHHHHhhHHHHHHH
Q psy6461 418 ATLVPYTKVEDLATVWCEWAELELRAG--------Q-EEAALRLMARA-TATPARPVAYHDEAETVQARVYKSIKLWSLY 487 (703)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~A~~~~~~a-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
+ +..|.++ .++..++.++.+.| + .++|+.+|+++ ++.+|.. ...|..+
T Consensus 302 ~-~~~p~~~----~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r-----------------~~~w~~~ 359 (382)
T 2h6f_A 302 L-QPSHSSP----YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR-----------------KEYWRYI 359 (382)
T ss_dssp H-TTTCCCH----HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG-----------------HHHHHHH
T ss_pred h-ccCCCCH----HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh-----------------HHHHHHH
Confidence 7 7788887 78888888887763 2 58999999999 9999985 7888888
Q ss_pred HHHHHh
Q psy6461 488 ADLEES 493 (703)
Q Consensus 488 ~~~~~~ 493 (703)
+..+..
T Consensus 360 ~~~l~~ 365 (382)
T 2h6f_A 360 GRSLQS 365 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=1.5e-20 Score=191.65 Aligned_cols=281 Identities=14% Similarity=0.103 Sum_probs=191.9
Q ss_pred CC-CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 27 NP-FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 27 ~P-~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
+| .+...|...+.... .|++++|...|+++++.+|.+...|..++...... |++++|...|+++++..|+
T Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN--------EKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp CGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTT
T ss_pred cchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCcC
Confidence 44 35577888888777 89999999999999999999999998888776653 8899999999999999999
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH-HHH-H-
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE-DYI-E- 181 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~-~- 181 (703)
++.+|..++.++...|++++|...|++++...|. ....+..+.... |.... .++ .
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~ 145 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ--YEQLGSVNLQAD--------------------VDIDDLNVQSED 145 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT--TTTC----------------------------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHhHHH--------------------HHHHHHHHHHHh
Confidence 9999999999999999999999999999998884 345554441110 00000 000 0
Q ss_pred -HHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHH
Q psy6461 182 -YLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLAD 260 (703)
Q Consensus 182 -~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (703)
.+...|++++|+..+++++.. .|. ...++..+|.
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~------------------------~~~---------------------~~~~~~~la~ 180 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEM------------------------NPN---------------------DAQLHASLGV 180 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHH------------------------STT---------------------CHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhh------------------------CCC---------------------CHHHHHHHHH
Confidence 012223333333333333210 000 0235556666
Q ss_pred HHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhh
Q psy6461 261 YYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLL 340 (703)
Q Consensus 261 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (703)
.+...|++++|...|++++...|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~--------------------------------------------------------- 203 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRP--------------------------------------------------------- 203 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---------------------------------------------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhCC---------------------------------------------------------
Confidence 66666666666666666544322
Q ss_pred hhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q psy6461 341 LLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATL 420 (703)
Q Consensus 341 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 420 (703)
..+.+|..+|.++...|++++|+..|+++++
T Consensus 204 -------------------------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 204 -------------------------------------------------DDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp -------------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1244678888899999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 421 VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
..|.++ ..|..++.++...|++++|...|++++...|.......... .......|..++.++...|+.
T Consensus 235 ~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 235 INPGYV----RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS-----REATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C-----CTHHHHHHHHHHHHHHHTTCH
T ss_pred cCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch-----hhcCHHHHHHHHHHHHhcCCH
Confidence 999887 88999999999999999999999999998887211000000 000256777888777777665
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.2e-17 Score=180.67 Aligned_cols=377 Identities=10% Similarity=-0.049 Sum_probs=242.4
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHhC
Q psy6461 61 PGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD----QHKITQTRHVFDRALRAL 136 (703)
Q Consensus 61 P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~ 136 (703)
+.++.....++..+..-. ...+++++|...|++++.. +++.++..++.++.. .+++++|...|+++....
T Consensus 36 ~g~~~a~~~lg~~y~~g~----~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGN----ETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTS----SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCC----CCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 445555555554443210 1125566666666666654 455666666666666 666666666666666532
Q ss_pred CcccccccHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCHHHHH---HHHHh----cCCHHHHHHHHHHhhccccc
Q psy6461 137 PITQHHRVWPLYLSFVKS----HAVPETAVRVFRRYLKLFPEDAEDYI---EYLSS----IERLDEAAVKLAYIVNKESF 205 (703)
Q Consensus 137 p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~---~~~~~----~~~~~~A~~~~~~~~~~~~~ 205 (703)
++..+..++.++.. .+++++|+..|+++.... +..++. .++.. .+++++|+..|+++.+.
T Consensus 110 ----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--- 180 (490)
T 2xm6_A 110 ----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--- 180 (490)
T ss_dssp ----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 23445555555555 456666666666665532 333222 22232 45666666666655421
Q ss_pred ccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHH----hCchHHHHHHHHHHHhh
Q psy6461 206 VSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIR----SGLFERARDIYEEAIQT 281 (703)
Q Consensus 206 ~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~ 281 (703)
....++..+|.+|.. .+++++|...|+++++.
T Consensus 181 --------------------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 181 --------------------------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp --------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred --------------------------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 113578888888888 88999999999998875
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHH
Q psy6461 282 VTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRV 361 (703)
Q Consensus 282 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~ 361 (703)
... . ... ....+. . . .
T Consensus 217 ~~~-~--a~~--~lg~~y--------------------------------~---------------~------------g 232 (490)
T 2xm6_A 217 GDE-L--GQL--HLADMY--------------------------------Y---------------F------------G 232 (490)
T ss_dssp TCH-H--HHH--HHHHHH--------------------------------H---------------H------------T
T ss_pred CCH-H--HHH--HHHHHH--------------------------------H---------------c------------C
Confidence 321 0 000 000000 0 0 0
Q ss_pred hhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q psy6461 362 RLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV----NDQLEDARLIFDKATLVPYTKVEDLATVWCEWA 437 (703)
Q Consensus 362 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (703)
.-..++.++|+..|+++++. ..+..+..++.++.. .+++++|+..|+++++. .++ ..+..++
T Consensus 233 ~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~----~a~~~Lg 298 (490)
T 2xm6_A 233 IGVTQDYTQSRVLFSQSAEQ--------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNS----DGQYYLA 298 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHTT--------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCH----HHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCH----HHHHHHH
Confidence 00026778899999988764 245678888888887 88999999999999875 344 7788888
Q ss_pred HHHHHc-----CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCch
Q psy6461 438 ELELRA-----GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYI 512 (703)
Q Consensus 438 ~~~~~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~ 512 (703)
.++... +++++|...|+++.+..+ ...+..++.++...|..
T Consensus 299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~~~-------------------~~a~~~lg~~y~~~g~~--------------- 344 (490)
T 2xm6_A 299 HLYDKGAEGVAKNREQAISWYTKSAEQGD-------------------ATAQANLGAIYFRLGSE--------------- 344 (490)
T ss_dssp HHHHHCBTTBCCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHSCCH---------------
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHHHhcCC-------------------HHHHHHHHHHHHhCCCc---------------
Confidence 888877 899999999999988753 56677777776654421
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHH
Q psy6461 513 FDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMF 588 (703)
Q Consensus 513 ~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 588 (703)
.++++|...|+++++. .+ +..+..++.++.. .+++++|...|+++.+..+.
T Consensus 345 -----------------~~~~~A~~~~~~a~~~--~~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~---- 399 (490)
T 2xm6_A 345 -----------------EEHKKAVEWFRKAAAK--GE--KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLS---- 399 (490)
T ss_dssp -----------------HHHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----
T ss_pred -----------------ccHHHHHHHHHHHHHC--CC--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCH----
Confidence 1348899999999887 33 5689999999888 78999999999999886542
Q ss_pred HHHHHHHHHHHH----hcCchHHHHHHHHHHHhCCC---cchHHHHHHHHHHHH
Q psy6461 589 EMFNIYIKKAAE----IYGIPKTRQIYERAIESLPE---EPTRQMCLKFAEMET 635 (703)
Q Consensus 589 ~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~a~~~~ 635 (703)
..+.....++.. .+++++|...|+++++..|+ ++. .+..++.++.
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~--a~~~l~~~~~ 451 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTEN--RNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHH--HHHHHTTSCH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHH--HHHHHHhcCH
Confidence 244444555554 57889999999999998854 333 4444444433
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=7.3e-17 Score=174.40 Aligned_cols=384 Identities=11% Similarity=-0.029 Sum_probs=285.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh----cCChHHHHH
Q psy6461 92 NNTFERSLVFMHKMPRIWLDYGRFLMD----QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS----HAVPETAVR 163 (703)
Q Consensus 92 ~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~ 163 (703)
...++++. .++++..+..++.++.. .+++++|...|+++++.. ++..+..++.++.. .+++++|+.
T Consensus 27 ~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44555443 46789999999999998 899999999999999853 35778888888888 889999999
Q ss_pred HHHHHHhhCCCCHHHH---HHHHHh----cCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccH
Q psy6461 164 VFRRYLKLFPEDAEDY---IEYLSS----IERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNV 236 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~~---~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 236 (703)
.|+++.... +..++ ..++.. .+++++|+..|+++.+.
T Consensus 101 ~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------------------- 144 (490)
T 2xm6_A 101 WYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ---------------------------------- 144 (490)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------------
T ss_pred HHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------------------------------
Confidence 999998753 44433 234445 67899999999877521
Q ss_pred HHHHHhHhhhhccchhhHHHHHHHHHHH----hCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6461 237 DAIIRGGLRRYTDQLGHLWNSLADYYIR----SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312 (703)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 312 (703)
..+.++..+|.+|.. .+++++|...|+++++... . ..+.....+.
T Consensus 145 -------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~--~---~a~~~Lg~~y------------- 193 (490)
T 2xm6_A 145 -------------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN--V---WSCNQLGYMY------------- 193 (490)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H---HHHHHHHHHH-------------
T ss_pred -------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--H---HHHHHHHHHH-------------
Confidence 113678899999988 7899999999999887521 1 1110000000
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchh
Q psy6461 313 NDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLH 392 (703)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 392 (703)
.. ..-..++.++|+..|+++++. ..+
T Consensus 194 -------------------~~---------------------------g~g~~~~~~~A~~~~~~a~~~--------~~~ 219 (490)
T 2xm6_A 194 -------------------SR---------------------------GLGVERNDAISAQWYRKSATS--------GDE 219 (490)
T ss_dssp -------------------HH---------------------------TSSSCCCHHHHHHHHHHHHHT--------TCH
T ss_pred -------------------hc---------------------------CCCCCcCHHHHHHHHHHHHHC--------CCH
Confidence 00 000027788999999999875 245
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCc
Q psy6461 393 TLWIEFGKFYEV----NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR----AGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 393 ~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
..+..++.++.. .+++++|+..|++++... ++ ..+..++.++.. .+++++|...|+++.+...
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--- 290 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NS----IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--- 290 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CH----HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CH----HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC---
Confidence 678899999986 789999999999998863 33 778889998888 8999999999999987642
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
+..+..++.++.....- ..+++++|...|+++++
T Consensus 291 ----------------~~a~~~Lg~~y~~~~~g------------------------------~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 291 ----------------SDGQYYLAHLYDKGAEG------------------------------VAKNREQAISWYTKSAE 324 (490)
T ss_dssp ----------------HHHHHHHHHHHHHCBTT------------------------------BCCCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHcCCCC------------------------------CcCCHHHHHHHHHHHHh
Confidence 56667777766654000 02456999999999998
Q ss_pred hCCCcchHHHHHHHHHHHHHcC---ChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcCchHHHHHHHHHHHh
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHG---LARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYGIPKTRQIYERAIES 617 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~ 617 (703)
..+ +..+..++.++...| ++++|+..|+++++... ...+..+..++.. .+++++|...|+++++.
T Consensus 325 ~~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 325 QGD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE----KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp TTC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cCC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 743 458999999988867 88999999999998743 2344555555555 68999999999999986
Q ss_pred CCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCC-CCChHhHHHHHHH
Q psy6461 618 LPEEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQICDP-RVTAGFWAAWKSF 669 (703)
Q Consensus 618 ~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~ 669 (703)
. + ...+..++.++.. .|++++|+.+|++|++..+. ..++..+.++..+
T Consensus 397 ~--~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 397 G--L--SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp T--C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred C--C--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 4 2 3388899999998 89999999999999998532 1134444444443
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.84 E-value=1e-19 Score=187.69 Aligned_cols=256 Identities=9% Similarity=0.058 Sum_probs=216.2
Q ss_pred hhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCC-hHHHHHHHHHhhccC
Q psy6461 346 LLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ-LEDARLIFDKATLVP 422 (703)
Q Consensus 346 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~ 422 (703)
.+..+|.+..+|..++.++. |++++|+..|++++... | ....+|..+|.++...|+ +++|+..|+++++++
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-A-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-c-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 36778888999988887654 89999999999999873 3 467899999999999996 999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHh
Q psy6461 423 YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK 502 (703)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 502 (703)
|++. .+|..++.++...|++++|+..|++++..+|++ ...|...+.++...|++
T Consensus 163 P~~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-----------------~~a~~~lg~~~~~~g~~----- 216 (382)
T 2h6f_A 163 PKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-----------------YHAWQHRQWVIQEFKLW----- 216 (382)
T ss_dssp TTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHTCC-----
T ss_pred CCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-----------------HHHHHHHHHHHHHcCCh-----
Confidence 9997 999999999999999999999999999999985 88999998888887765
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-cCChHHH-----HHHHH
Q psy6461 503 GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE-HGLARHA-----MAVYE 576 (703)
Q Consensus 503 al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~-~g~~~~A-----~~~~~ 576 (703)
++|+..|+++++.+|++ ..+|..++.++.. .|..++| +..|+
T Consensus 217 ------------------------------~eAl~~~~~al~l~P~~--~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 217 ------------------------------DNELQYVDQLLKEDVRN--NSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp ------------------------------TTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 89999999999999999 6799999999999 5655888 58999
Q ss_pred HHhhccCcchHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC--------C-HHHHHH
Q psy6461 577 RATGAVLPEEMFEMFNIYIKKAAEIY--GIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG--------E-IDRARA 645 (703)
Q Consensus 577 ~al~~~p~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g--------~-~~~A~~ 645 (703)
+++...|++... |......+...| ++++|...++++ +..|+++. ++..++.++.+.| + +++|+.
T Consensus 265 ~Al~l~P~~~~a--~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~--al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 265 EMIKLVPHNESA--WNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY--LIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHSTTCHHH--HHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH--HHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHCCCCHHH--HHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH--HHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 999999998554 444444444444 689999999888 88898766 7888999988875 3 589999
Q ss_pred HHHHH-hcccCCCCChHhHHHHHHHHHH
Q psy6461 646 IYAHC-SQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 646 ~~~~a-~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
+|+++ +++ +|. ....|..+......
T Consensus 340 ~~~~l~~~~-DP~-r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 340 LCEILAKEK-DTI-RKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHTT-CGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-Cch-hHHHHHHHHHHHHH
Confidence 99999 788 454 57888887776543
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=1.6e-19 Score=172.21 Aligned_cols=211 Identities=15% Similarity=0.073 Sum_probs=168.3
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
.++.+|..+|..+...|++++|+..|+++++.+|.++ ..|..++.++.+.|++++|+..|+++++.+|++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------ 72 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVARTPRY------ 72 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------
Confidence 3567899999999999999999999999999999998 999999999999999999999999999999985
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
...|..++.++...+.. ... . +. ..|++++|...|+++++.+|++
T Consensus 73 -----------~~a~~~lg~~~~~~~~~------------~~~--~---~~-------~~g~~~~A~~~~~~al~~~P~~ 117 (217)
T 2pl2_A 73 -----------LGGYMVLSEAYVALYRQ------------AED--R---ER-------GKGYLEQALSVLKDAERVNPRY 117 (217)
T ss_dssp -----------HHHHHHHHHHHHHHHHT------------CSS--H---HH-------HHHHHHHHHHHHHHHHHHCTTC
T ss_pred -----------HHHHHHHHHHHHHhhhh------------hhh--h---cc-------cccCHHHHHHHHHHHHHhCccc
Confidence 78888888887765110 000 0 00 0133599999999999999998
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK 629 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (703)
+.+|..+|.++...|++++|+..|+++++.. ++ ..++......+...|++++|+..|+++++..|+++. ++..
T Consensus 118 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~--~~~~ 190 (217)
T 2pl2_A 118 --APLHLQRGLVYALLGERDKAEASLKQALALE-DT--PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD--LRVR 190 (217)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--HHHH
T ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHH
Confidence 6799999999999999999999999999998 55 456777788888899999999999999999999876 8999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQ 652 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~ 652 (703)
++.++...|++++|+..|+++-.
T Consensus 191 la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 191 YASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHTC----------------
T ss_pred HHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999998754
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=2.6e-19 Score=182.37 Aligned_cols=281 Identities=13% Similarity=0.068 Sum_probs=223.8
Q ss_pred cHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHH
Q psy6461 353 NVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLA 430 (703)
Q Consensus 353 ~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 430 (703)
+...|+..+..+ .|++++|+..|++++... | ....+|..+|.++...|++++|...|+++++..|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---- 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-P-----EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---- 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH----
Confidence 445556655533 499999999999999873 3 3577899999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCC
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWP 510 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~ 510 (703)
..+..++.++...|++++|...+++++...|... ..+..+.........
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~-------------- 138 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYE-----------------QLGSVNLQADVDIDD-------------- 138 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT-----------------TC---------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH-----------------HHHHHHhHHHHHHHH--------------
Confidence 8999999999999999999999999999998852 222222110000000
Q ss_pred chHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHH
Q psy6461 511 YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEM 590 (703)
Q Consensus 511 ~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 590 (703)
..+. ... ......+++++|...++++++..|.+ ..++..++.++...|++++|...+++++...|.+ ...
T Consensus 139 ---~~~~--~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~ 208 (327)
T 3cv0_A 139 ---LNVQ--SED-FFFAAPNEYRECRTLLHAALEMNPND--AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD--AQL 208 (327)
T ss_dssp -------------CCTTSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH
T ss_pred ---HHHH--HHh-HHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--HHH
Confidence 0000 000 00011245699999999999999998 6799999999999999999999999999999987 456
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC----------Ch
Q psy6461 591 FNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV----------TA 660 (703)
Q Consensus 591 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~ 660 (703)
+...+..+...|++++|...|+++++..|+++. .|..++.++...|++++|...|+++++..|... ..
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVR--VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 777777788899999999999999999998766 899999999999999999999999999855410 37
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 661 GFWAAWKSFEITHGNEDTMREMLRIK 686 (703)
Q Consensus 661 ~~~~~~~~~~~~~g~~~~~~~~~~~~ 686 (703)
..|..++......|+.+.|..+++.+
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 78999999999999999999887543
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=7.7e-18 Score=160.44 Aligned_cols=200 Identities=16% Similarity=0.118 Sum_probs=167.4
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHh
Q psy6461 423 YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK 502 (703)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 502 (703)
|.++ ..++.++..+.+.|++++|+..|+++++.+|++ +..|..++.++...|++
T Consensus 2 p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~a~~~lg~~~~~~g~~----- 55 (217)
T 2pl2_A 2 QTAE----QNPLRLGVQLYALGRYDAALTLFERALKENPQD-----------------PEALYWLARTQLKLGLV----- 55 (217)
T ss_dssp --CC----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-----------------HHHHHHHHHHHHHTTCH-----
T ss_pred CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH-----
Confidence 5565 889999999999999999999999999999995 88999999888887765
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc-----------CChHHH
Q psy6461 503 GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH-----------GLARHA 571 (703)
Q Consensus 503 al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-----------g~~~~A 571 (703)
++|...|+++++.+|++ +..|..+|.++... |++++|
T Consensus 56 ------------------------------~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 56 ------------------------------NPALENGKTLVARTPRY--LGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp ------------------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence 99999999999999998 67999999999999 999999
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 572 MAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 572 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
+..|+++++..|++ ...|......+...|++++|+..|+++++.. +++. ++..++.++...|++++|+..|++++
T Consensus 104 ~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~--~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 104 LSVLKDAERVNPRY--APLHLQRGLVYALLGERDKAEASLKQALALE-DTPE--IRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH--HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999988 4567777777888999999999999999999 6655 89999999999999999999999999
Q ss_pred cccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6461 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKR 687 (703)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 687 (703)
+.. |+ ++.++..++......|+.++|.+.++...
T Consensus 179 ~~~-P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 179 EQA-PK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHS-TT-CHHHHHHHHHHHTC---------------
T ss_pred HhC-CC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 994 44 58899999999999999999988875543
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=1.1e-17 Score=165.48 Aligned_cols=243 Identities=9% Similarity=0.009 Sum_probs=187.2
Q ss_pred cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC
Q psy6461 365 DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG 444 (703)
Q Consensus 365 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (703)
.|++++|+..|++++... | ....+|..+|.++...|++++|+..|++++.. |.++......|..++.++...|
T Consensus 16 ~~~~~~A~~~~~~~l~~~-p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKK-Y-----NSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp TTCHHHHHHHHHHHHHTT-C-----CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhC-C-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcc
Confidence 388999999999998863 3 23457888899999999999999999999984 4444333466889999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHH
Q psy6461 445 QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524 (703)
Q Consensus 445 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~ 524 (703)
++++|+..|++++...|.+ ..+|..++.++...|++
T Consensus 89 ~~~~A~~~~~~a~~~~~~~-----------------~~~~~~l~~~~~~~~~~--------------------------- 124 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTR-----------------LDMYGQIGSYFYNKGNF--------------------------- 124 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTC-----------------THHHHHHHHHHHHTTCH---------------------------
T ss_pred cHHHHHHHHHHHHhcCccc-----------------HHHHHHHHHHHHHccCH---------------------------
Confidence 9999999999999998875 67888888887777665
Q ss_pred HHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC-
Q psy6461 525 SRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG- 603 (703)
Q Consensus 525 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~- 603 (703)
++|...|+++++..|.+ +.+|..+|......+++++|...|+++++..|.+... +..........++
T Consensus 125 --------~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~--~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 125 --------PLAIQYMEKQIRPTTTD--PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG--YLWRARANAAQDPD 192 (272)
T ss_dssp --------HHHHHHHGGGCCSSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHHSTT
T ss_pred --------HHHHHHHHHHhhcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHH--HHHHHHHHHHcCcc
Confidence 89999999999999988 6788888844445669999999999999999987443 3334444444566
Q ss_pred --chHHHHHHHHHHHhC---CCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 604 --IPKTRQIYERAIESL---PEEP---TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 604 --~~~A~~~~~~al~~~---p~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
+++|...|+++++.. |+.. ...++..++.++...|++++|+..|++++++. |+ ++..+.....+...
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~-~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PT-NKKAIDGLKMKLEH 267 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-CHHHHHHHC-----
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cc-HHHHHHHhhhhhcc
Confidence 888999999999886 4421 23478888999999999999999999999985 44 57677666555443
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=8.6e-18 Score=163.15 Aligned_cols=220 Identities=14% Similarity=0.040 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+..|+.+|..+...|++++|+..|+++++..|.++ .++..++.++...|++++|+..|++++...|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA----IPYINFANLLSSVNELERALAFYDKALELDSSA------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-------
Confidence 355788889999999999999999999999999887 889999999999999999999999999999874
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
..++..++.++...|++ ++|...|+++++..|.+
T Consensus 91 ----------~~~~~~la~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~- 124 (243)
T 2q7f_A 91 ----------ATAYYGAGNVYVVKEMY-----------------------------------KEAKDMFEKALRAGMEN- 124 (243)
T ss_dssp ----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHTCCS-
T ss_pred ----------hHHHHHHHHHHHHhccH-----------------------------------HHHHHHHHHHHHhCCCC-
Confidence 77888888887776665 99999999999999988
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
..++..++.++...|++++|...++++++..|.+ ..++...+..+...|++++|...|+++++..|+++. ++..+
T Consensus 125 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l 199 (243)
T 2q7f_A 125 -GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD--AFYNA 199 (243)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHH--HHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--HHHHH
Confidence 6789999999999999999999999999999987 456677777778889999999999999999998765 89999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcC
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g 674 (703)
+.++...|++++|...|+++++.. |+ +...+..+..+....|
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~-p~-~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQ-PD-HMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHC-TT-CHHHHHHHTC------
T ss_pred HHHHHHccCHHHHHHHHHHHHccC-cc-hHHHHHHHHHHHhhcc
Confidence 999999999999999999999985 44 4777777666655443
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.7e-17 Score=161.12 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=188.2
Q ss_pred HHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH---
Q psy6461 355 LEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL--- 429 (703)
Q Consensus 355 ~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--- 429 (703)
..|...+..+ .|++++|+..|++++... . .+.+|..+|.++...|++++|+..|++++...|.+....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-K------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 3444444432 388999999999998874 2 366889999999999999999999999998876552111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCC
Q psy6461 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKW 509 (703)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~ 509 (703)
..+|..++.++...|++++|...|++++...|. ..++.. .
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------------~~~~~~-------~--------------- 118 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------------------ADILTK-------L--------------- 118 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------------HHHHHH-------H---------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------------------hHHHHH-------H---------------
Confidence 378899999999999999999999999998876 222222 1
Q ss_pred CchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHH
Q psy6461 510 PYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFE 589 (703)
Q Consensus 510 ~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 589 (703)
+++++|...+++++...|.+ ..+|..+|.++...|++++|+..|+++++..|.+ ..
T Consensus 119 --------------------~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~ 174 (258)
T 3uq3_A 119 --------------------RNAEKELKKAEAEAYVNPEK--AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--AR 174 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred --------------------hHHHHHHHHHHHHHHcCcch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc--HH
Confidence 22489999999999999987 6799999999999999999999999999999987 45
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 590 MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
++...+..+...|++++|...|+++++..|+++. .|..++.++...|++++|...|++++++.
T Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 175 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR--AYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 6677777778889999999999999999999765 89999999999999999999999999985
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=3.6e-17 Score=161.83 Aligned_cols=239 Identities=11% Similarity=0.069 Sum_probs=199.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
+++++.+|..+...|++++|+..|+++++.+|.++ .+|..++.++...|++++|+..+++++.. |.+...
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~----- 72 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKA----- 72 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTC-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhH-----
Confidence 34678899999999999999999999999999987 78999999999999999999999999994 332111
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
....|..++.++...|++ ++|...|+++++..|.+
T Consensus 73 --------~~~~~~~lg~~~~~~~~~-----------------------------------~~A~~~~~~a~~~~~~~-- 107 (272)
T 3u4t_A 73 --------KSADFEYYGKILMKKGQD-----------------------------------SLAIQQYQAAVDRDTTR-- 107 (272)
T ss_dssp --------CHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHSTTC--
T ss_pred --------HHHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHHHhcCccc--
Confidence 145577777777776665 99999999999999998
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (703)
+.+|..+|.++...|++++|+..|+++++..|.+. ..|..........+++++|...|+++++..|+++. .+..++
T Consensus 108 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~~~ 183 (272)
T 3u4t_A 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP--KVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI--GYLWRA 183 (272)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchH--HHHHHH
Confidence 57999999999999999999999999999999884 34444442333456999999999999999999865 788889
Q ss_pred HHHHHcCC---HHHHHHHHHHHhcccCCCCC------hHhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy6461 632 EMETKLGE---IDRARAIYAHCSQICDPRVT------AGFWAAWKSFEITHGNEDTMREMLRIKRSV 689 (703)
Q Consensus 632 ~~~~~~g~---~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 689 (703)
.++...|+ +++|...|+++++....... ...+..++.+....|+.++|.+.++.+-.+
T Consensus 184 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99989998 88999999999987522211 267888999999999999999999665544
No 41
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.6e-16 Score=158.37 Aligned_cols=208 Identities=15% Similarity=0.156 Sum_probs=165.6
Q ss_pred CCchhHHHHHHHHHHhc-CCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC
Q psy6461 366 GKPLDIIRTYTEAVKTV-DPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG 444 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (703)
++.++|++.+++.+..- .| ..+.+++.+|.++...|++++|+..|++ |.++ .++..++.++.+.|
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P-----~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~----~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDV-----TNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL----ECMAMTVQILLKLD 144 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCC-----SCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH----HHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH----HHHHHHHHHHHHCC
Confidence 67789999999988651 23 4577899999999999999999999998 6666 88999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHH
Q psy6461 445 QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524 (703)
Q Consensus 445 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~ 524 (703)
++++|...|+++++..|++. ...+...++.+...
T Consensus 145 ~~~~A~~~l~~~~~~~p~~~---------------~~~l~~a~~~l~~~------------------------------- 178 (291)
T 3mkr_A 145 RLDLARKELKKMQDQDEDAT---------------LTQLATAWVSLAAG------------------------------- 178 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHC-------------------------------
T ss_pred CHHHHHHHHHHHHhhCcCcH---------------HHHHHHHHHHHHhC-------------------------------
Confidence 99999999999999988741 01111222222222
Q ss_pred HHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCc
Q psy6461 525 SRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGI 604 (703)
Q Consensus 525 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 604 (703)
.+++++|..+|+++++..|++ +.+|..+|.++...|++++|...|++++...|++. ..+..++......|+.
T Consensus 179 ----~~~~~eA~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~--~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 179 ----GEKLQDAYYIFQEMADKCSPT--LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP--ETLINLVVLSQHLGKP 250 (291)
T ss_dssp ----TTHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCC
T ss_pred ----chHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCC
Confidence 345699999999999999998 67999999999999999999999999999999984 4566677777778888
Q ss_pred hH-HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy6461 605 PK-TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647 (703)
Q Consensus 605 ~~-A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 647 (703)
++ +..+++++++..|+++.+ .++..+.+.|++|..-|
T Consensus 251 ~eaa~~~~~~~~~~~P~~~~~------~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 251 PEVTNRYLSQLKDAHRSHPFI------KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHH------HHHHHHHHHHHHHHHHc
Confidence 75 678999999999998762 23445666677766555
No 42
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=9.1e-17 Score=160.23 Aligned_cols=254 Identities=9% Similarity=0.048 Sum_probs=172.6
Q ss_pred hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc
Q psy6461 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 364 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
+.|++..|+..+++.... .|. ........+++.|...|+++.|+..++.. .|.. ...+..++.++...
T Consensus 11 ~~g~y~~ai~~~~~~~~~-~p~----~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~----~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS-SPE----RDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE----LQAVRMFAEYLASH 78 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC-SHH----HHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH----HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhcccC-Cch----hhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh----HHHHHHHHHHHcCC
Confidence 347778787777654322 121 12345566677888888888888766542 2222 25667777777778
Q ss_pred CCHHHHHHHHHHHhcC--CCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHH
Q psy6461 444 GQEEAALRLMARATAT--PARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLT 521 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~ 521 (703)
++.++|++.+++.+.. +|++ +.++...+.++...|++ ++|++.+..+.+..++...+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~-----------------~~~~~~la~~~~~~g~~---~~Al~~l~~~~~~~~~~~l~~ 138 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTN-----------------TTFLLMAASIYFYDQNP---DAALRTLHQGDSLECMAMTVQ 138 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSC-----------------HHHHHHHHHHHHHTTCH---HHHHHHHTTCCSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCC-----------------HHHHHHHHHHHHHCCCH---HHHHHHHhCCCCHHHHHHHHH
Confidence 8888888888887754 4764 67777878888877776 566655544555555554443
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 522 KFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 522 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
.+.. .|++++|.+.|+++++.+|++....+...+..+....|++++|..+|+++++..|++ ..++...+..+.+.
T Consensus 139 ~~~~---~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~--~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 139 ILLK---LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT--LLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHT
T ss_pred HHHH---CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHc
Confidence 2222 466788888888888888876211122234444555678888888888888888876 45666677777778
Q ss_pred cCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH-HHHHHHHHhcccCC
Q psy6461 602 YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDR-ARAIYAHCSQICDP 656 (703)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~-A~~~~~~a~~~~~~ 656 (703)
|++++|...|+++++..|+++. ++..++.++...|+.++ +...++++++..|.
T Consensus 214 g~~~eA~~~l~~al~~~p~~~~--~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDSGHPE--TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888888766 78888888888888765 56788888887443
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=5.1e-17 Score=150.38 Aligned_cols=172 Identities=9% Similarity=0.105 Sum_probs=137.6
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
.++.+|+.+|..+...|++++|+..|+++++.+|+++ .+|..++.++.+.|++++|...+.+++...|+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~------ 72 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------ 72 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh------
Confidence 3567888889999999999999999999999888887 888888888888999999999999888888874
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
...+...+.+....++. +.|...+.++++..|++
T Consensus 73 -----------~~~~~~~~~~~~~~~~~-----------------------------------~~a~~~~~~a~~~~~~~ 106 (184)
T 3vtx_A 73 -----------AEAYYILGSANFMIDEK-----------------------------------QAAIDALQRAIALNTVY 106 (184)
T ss_dssp -----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTTC
T ss_pred -----------HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCccc
Confidence 67777777666665554 88888888888888888
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCc
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (703)
..++..+|.++...|++++|+..|+++++..|.+ ...|...+..+...|++++|...|+++++.+|++
T Consensus 107 --~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 107 --ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF--IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred --hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh--hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 5688888888888888888888888888888876 3455555666666777777777777777777754
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.4e-16 Score=154.29 Aligned_cols=235 Identities=15% Similarity=0.072 Sum_probs=199.0
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....|..+|..+...|++++|+..|+++++.. .++ .+|..++.++...|++++|...+++++...|+.....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--- 75 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI----TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY--- 75 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch---
Confidence 45678999999999999999999999999998 666 8999999999999999999999999999877531000
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
.....+|...+.++...|++ ++|...|+++++..|..
T Consensus 76 -------~~~~~~~~~l~~~~~~~~~~-----------------------------------~~A~~~~~~a~~~~~~~- 112 (258)
T 3uq3_A 76 -------KVISKSFARIGNAYHKLGDL-----------------------------------KKTIEYYQKSLTEHRTA- 112 (258)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCCCH-
T ss_pred -------HHHHHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHHHhcCchh-
Confidence 00146677777777766654 99999999999999873
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
. ++...|++++|...+++++...|.+ ..++...+..+...|++++|...|+++++..|+++. ++..+
T Consensus 113 --~-------~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l 179 (258)
T 3uq3_A 113 --D-------ILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR--GYSNR 179 (258)
T ss_dssp --H-------HHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHH
T ss_pred --H-------HHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH--HHHHH
Confidence 2 3445578899999999999998876 456777777788899999999999999999999765 89999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQA 691 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 691 (703)
+.++...|++++|...++++++..| + ....|..++......|+.++|.+.++.+-.+..
T Consensus 180 ~~~~~~~~~~~~A~~~~~~al~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 180 AAALAKLMSFPEAIADCNKAIEKDP-N-FVRAYIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCH-H-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999854 4 588999999999999999999999977766653
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=2.6e-16 Score=153.64 Aligned_cols=202 Identities=12% Similarity=0.067 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
+.+|..+|..+...|++++|+..|+++++..|.++ .+|..++.++...|++++|...|++++...|.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 104 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA----DAHAALAVVFQTEMEPKLADEEYRKALASDSRN-------- 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--------
Confidence 56777777777777888888888888777777665 777777777777788888888888877777763
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--hCCCc
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE--ACPPR 549 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~ 549 (703)
..+|..++.++...|++ ++|+..|+++++ ..|.+
T Consensus 105 ---------~~~~~~la~~~~~~g~~-----------------------------------~~A~~~~~~~~~~~~~~~~ 140 (252)
T 2ho1_A 105 ---------ARVLNNYGGFLYEQKRY-----------------------------------EEAYQRLLEASQDTLYPER 140 (252)
T ss_dssp ---------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHTTCTTCTTH
T ss_pred ---------HHHHHHHHHHHHHHhHH-----------------------------------HHHHHHHHHHHhCccCccc
Confidence 56666666666665554 777777777777 55655
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK 629 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (703)
..++..++.++...|++++|...|++++...|.+ ...+..++..+...|++++|...++++++..|+++. .+..
T Consensus 141 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 214 (252)
T 2ho1_A 141 --SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ--PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR--SLLL 214 (252)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHH--HHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH--HHHH
Confidence 4577777777777788888888888887777765 345556666666677788888888888877776654 6777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
++.++...|++++|...++++++..|
T Consensus 215 ~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 215 GIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 77777778888888888888877743
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=5.9e-16 Score=147.98 Aligned_cols=204 Identities=12% Similarity=0.037 Sum_probs=152.2
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
..+.+|..+|..+...|++++|+..|+++++..|.++ .+|..++.++...|++++|...+++++...|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------ 75 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------ 75 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------
Confidence 4566777888888888888888888888888777776 777888888888888888888888888877764
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhc-CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--hC
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESF-GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE--AC 546 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~--~~ 546 (703)
...+..++.++... |++ ++|...|+++++ ..
T Consensus 76 -----------~~~~~~l~~~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~ 109 (225)
T 2vq2_A 76 -----------AEINNNYGWFLCGRLNRP-----------------------------------AESMAYFDKALADPTY 109 (225)
T ss_dssp -----------HHHHHHHHHHHHTTTCCH-----------------------------------HHHHHHHHHHHTSTTC
T ss_pred -----------hHHHHHHHHHHHHhcCcH-----------------------------------HHHHHHHHHHHcCcCC
Confidence 56677776666665 554 778888888887 44
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC-CcchHH
Q psy6461 547 PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLP-EEPTRQ 625 (703)
Q Consensus 547 p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 625 (703)
|.+ ..+|..++.++...|++++|+..|+++++..|.+ ...+...+..+...|++++|..+++++++..| +++.
T Consensus 110 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 183 (225)
T 2vq2_A 110 PTP--YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD-- 183 (225)
T ss_dssp SCH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH--
T ss_pred cch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--
Confidence 444 4577788888888888888888888888877776 34555666666677788888888888888877 6554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 626 MCLKFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
.+...+.++...|+.+.|..+++.+.+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 184 DLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 566667777778888888888877776643
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.74 E-value=2e-16 Score=146.33 Aligned_cols=170 Identities=12% Similarity=0.104 Sum_probs=145.8
Q ss_pred CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHH
Q psy6461 29 FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPR 107 (703)
Q Consensus 29 ~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 107 (703)
.+...|..++..+. .|++++|+..|+++++.+|+++..|..++..+... |++++|...+++++...|+++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDI--------GLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCCCCHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcCchhHH
Confidence 46778888888888 89999999999999999999999998888887654 7889999999999999999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcC
Q psy6461 108 IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIE 187 (703)
Q Consensus 108 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 187 (703)
+|...+.++...++++.|...+.+++...| .+..+|..++.++...|++++|+..|+++++.+|.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~----------- 141 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI----------- 141 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh-----------
Confidence 999999999999999999999999999988 4578888888888889999999999999988888774
Q ss_pred CHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCc
Q psy6461 188 RLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGL 267 (703)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (703)
.+|..+|.+|...|+
T Consensus 142 -----------------------------------------------------------------~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 142 -----------------------------------------------------------------RAYQSIGLAYEGKGL 156 (184)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHTTC
T ss_pred -----------------------------------------------------------------hHHHHHHHHHHHCCC
Confidence 467778888888888
Q ss_pred hHHHHHHHHHHHhhcCC
Q psy6461 268 FERARDIYEEAIQTVTT 284 (703)
Q Consensus 268 ~~~A~~~~~~~l~~~~~ 284 (703)
+++|+..|+++++..|+
T Consensus 157 ~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 88888888888887664
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=6.3e-17 Score=170.16 Aligned_cols=316 Identities=10% Similarity=-0.006 Sum_probs=230.4
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH-HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF-TQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLAR 330 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (703)
...+...|..+...|++++|...|++++...|..... ..++...+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~---------------------------------- 54 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLG---------------------------------- 54 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH----------------------------------
Confidence 3578889999999999999999999999987653211 11111110
Q ss_pred HHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHH
Q psy6461 331 LEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLED 410 (703)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 410 (703)
.+....|++++|+..|++++.........+....++..+|.++...|++++
T Consensus 55 -----------------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 105 (406)
T 3sf4_A 55 -----------------------------NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 105 (406)
T ss_dssp -----------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------------HHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 011112888999999999887632222223457789999999999999999
Q ss_pred HHHHHHHhhccCCCC--cchHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHhcCCCCCccccc
Q psy6461 411 ARLIFDKATLVPYTK--VEDLATVWCEWAELELRAGQ--------------------EEAALRLMARATATPARPVAYHD 468 (703)
Q Consensus 411 A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~a~~~~p~~~~~~~ 468 (703)
|...|++++...+.. ......++..++.++...|+ +++|...+.+++...+.....
T Consensus 106 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~-- 183 (406)
T 3sf4_A 106 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR-- 183 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc--
Confidence 999999999885532 12234689999999999999 999999999887653221000
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 469 EAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
......+..++.++...|+ +++|...|+++++..|.
T Consensus 184 ---------~~~~~~~~~la~~~~~~g~-----------------------------------~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 184 ---------AAQGRAFGNLGNTHYLLGN-----------------------------------FRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTB-----------------------------------HHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHccC-----------------------------------HHHHHHHHHHHHHHHHh
Confidence 0023455666666665555 48999999999987654
Q ss_pred cc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch----HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 549 RY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE----MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 549 ~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
.. ...++..+|.++...|++++|...+++++...|... ....+......+...|++++|...|+++++..+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 31 124889999999999999999999999998766431 2345666677777889999999999999988553
Q ss_pred cc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC----CChHhHHHHHHHHHHcCCH
Q psy6461 621 EP----TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR----VTAGFWAAWKSFEITHGNE 676 (703)
Q Consensus 621 ~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~g~~ 676 (703)
.. ...++..++.++...|++++|...|++++++.+.. .....+..++.+....|..
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 32 13478889999999999999999999999874322 1356677788888777754
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=2.6e-16 Score=152.61 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=173.7
Q ss_pred HHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHH
Q psy6461 354 VLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLAT 431 (703)
Q Consensus 354 ~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 431 (703)
...|...+..+ .|++++|+..|++++... | ....++..+|.++...|++++|+..|+++++..|.+. .
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 92 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-K-----EDAIPYINFANLLSSVNELERALAFYDKALELDSSAA----T 92 (243)
T ss_dssp -------------------CCTTHHHHHTTC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-c-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch----H
Confidence 34444444432 389999999999999863 3 3577899999999999999999999999999999887 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCc
Q psy6461 432 VWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPY 511 (703)
Q Consensus 432 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~ 511 (703)
++..++.++...|++++|...++++++..|.+ ..+|..++.++...|++
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~a~~~~~~~~~-------------- 141 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-----------------GDLFYMLGTVLVKLEQP-------------- 141 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-----------------HHHHHHHHHHHHHTSCH--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhccH--------------
Confidence 99999999999999999999999999999984 77888888888777665
Q ss_pred hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHH
Q psy6461 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMF 591 (703)
Q Consensus 512 ~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 591 (703)
++|...++++++..|++ ..++..++.++...|++++|+..|++++...|.+ ...+
T Consensus 142 ---------------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~ 196 (243)
T 2q7f_A 142 ---------------------KLALPYLQRAVELNEND--TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH--ADAF 196 (243)
T ss_dssp ---------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC--HHHH
T ss_pred ---------------------HHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHH
Confidence 99999999999999998 6799999999999999999999999999999987 4567
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL 637 (703)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 637 (703)
...+..+...|++++|...|+++++..|+++. ++..++.+....
T Consensus 197 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~l~~~~ 240 (243)
T 2q7f_A 197 YNAGVTYAYKENREKALEMLDKAIDIQPDHML--ALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH--HHHHHTC-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCcchHH--HHHHHHHHHhhc
Confidence 77777888899999999999999999999876 666665554433
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=1.4e-15 Score=148.38 Aligned_cols=210 Identities=10% Similarity=0.022 Sum_probs=182.6
Q ss_pred hcCCCc-HHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 348 RQNPHN-VLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 348 ~~~p~~-~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
..+|.+ +..|..++..+ .|++++|+..|++++... | ....+|..+|.++...|++++|+..|+++++..|.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-P-----SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-C-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 445665 77777777654 499999999999999873 3 35778999999999999999999999999999998
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHh
Q psy6461 425 KVEDLATVWCEWAELELRAGQEEAALRLMARATA--TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK 502 (703)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 502 (703)
+. .+|..++.++...|++++|+..|++++. ..|. ...++..++.++...|++
T Consensus 104 ~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~----- 157 (252)
T 2ho1_A 104 NA----RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE-----------------RSRVFENLGLVSLQMKKP----- 157 (252)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT-----------------HHHHHHHHHHHHHHTTCH-----
T ss_pred cH----HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc-----------------cHHHHHHHHHHHHHcCCH-----
Confidence 87 8999999999999999999999999999 6665 367788888777776665
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q psy6461 503 GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAV 582 (703)
Q Consensus 503 al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 582 (703)
++|...|+++++..|.+ ..++..++.++...|++++|...++++++..
T Consensus 158 ------------------------------~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 158 ------------------------------AQAKEYFEKSLRLNRNQ--PSVALEMADLLYKEREYVPARQYYDLFAQGG 205 (252)
T ss_dssp ------------------------------HHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred ------------------------------HHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998 6799999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 583 LPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 583 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
|.+ ...+......+...|++++|+..++++++..|+++.
T Consensus 206 ~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 206 GQN--ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred cCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 977 445666777777889999999999999999999875
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=7.9e-17 Score=159.55 Aligned_cols=124 Identities=16% Similarity=0.123 Sum_probs=108.2
Q ss_pred cCchhHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy6461 43 NAPKAIINTIYERSLKEL----PGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD 118 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~----P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 118 (703)
++++++|...|+++++.. |.+...|..++...... |++++|...|+++++..|+++.+|..++.++..
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--------GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 688999999999999874 46677888877776654 889999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 119 QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 119 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
.|++++|...|+++++..| ....+|..++.++...|++++|+..|+++++.+|.+.
T Consensus 90 ~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccCHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999998 4578888889998899999999999999999888875
No 52
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=7.7e-14 Score=157.76 Aligned_cols=332 Identities=12% Similarity=0.137 Sum_probs=222.5
Q ss_pred hhHHHHhcCCCChHHHHHH---------HHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhH
Q psy6461 19 PYEEEILRNPFSVKHWLRY---------IEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSY 88 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~---------~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~ 88 (703)
....+|+.++..+...... +..+. .|.+++|..+|+++- ........+++ . .+++
T Consensus 1028 Li~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie----~-------i~nl 1092 (1630)
T 1xi4_A 1028 LILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE----H-------IGNL 1092 (1630)
T ss_pred HHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH----H-------HhhH
Confidence 3444555566555544444 66666 899999999999983 12222222221 1 2678
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHH
Q psy6461 89 EDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168 (703)
Q Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 168 (703)
++|.++++++ +++.+|..+|..+...|++++|...|.+| .++..|...+.++.+.|++++|++.|..+
T Consensus 1093 drAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1093 DRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888865 67999999999999999999999999986 23466888999999999999999999999
Q ss_pred HhhCCCCH-H-HHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhh
Q psy6461 169 LKLFPEDA-E-DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRR 246 (703)
Q Consensus 169 l~~~p~~~-~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (703)
.+..|++. . ..+-.+.+.+++++. ..| ++ .
T Consensus 1161 rk~~~e~~Idt~LafaYAKl~rleel-e~f---I~-------------------------~------------------- 1192 (1630)
T 1xi4_A 1161 RKKARESYVETELIFALAKTNRLAEL-EEF---IN-------------------------G------------------- 1192 (1630)
T ss_pred HhhcccccccHHHHHHHHhhcCHHHH-HHH---Hh-------------------------C-------------------
Confidence 98876642 2 233335566777742 222 11 0
Q ss_pred hccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHH
Q psy6461 247 YTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326 (703)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (703)
.....|..+|+.+...|++++|...|.++- ++..+-..+..+.+ .+.
T Consensus 1193 ---~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-------ny~rLA~tLvkLge-----------------------~q~ 1239 (1630)
T 1xi4_A 1193 ---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------NFGRLASTLVHLGE-----------------------YQA 1239 (1630)
T ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-------HHHHHHHHHHHhCC-----------------------HHH
Confidence 012356678888888888888888888852 22222222211100 111
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH
Q psy6461 327 RLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV 404 (703)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 404 (703)
+...+.+ ..+..+|....... .|++..|..+... +.. .++....++.+|..
T Consensus 1240 AIEaarK-----------------A~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---------~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1240 AVDGARK-----------------ANSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---------HADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHH-----------------hCCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---------CHHHHHHHHHHHHH
Confidence 1222222 24557776655432 3667777776653 221 24456688899999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR--AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIK 482 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 482 (703)
.|.+++|+.+++.++.+++.++ .+|..++.++.+ -++.-++.+.|...+.++|-- ... ....
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~----gmftELaiLyaKy~peklmEhlk~f~~rini~k~~--------r~~----e~~~ 1356 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHM----GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL--------RAA----EQAH 1356 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHh----HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh--------HHH----HHHH
Confidence 9999999999999999998887 788777777765 456778888888888776610 000 1378
Q ss_pred HHHHHHHHHHhcCChhHHHhHh
Q psy6461 483 LWSLYADLEESFGTFKAYEKGI 504 (703)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~e~al 504 (703)
+|..++-++...|++ ++|+
T Consensus 1357 lW~elv~LY~~~~e~---dnA~ 1375 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEY---DNAI 1375 (1630)
T ss_pred HHHHHHHHHHhcccH---HHHH
Confidence 899988888888876 5555
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=2.3e-15 Score=143.79 Aligned_cols=209 Identities=12% Similarity=0.061 Sum_probs=180.5
Q ss_pred cCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc
Q psy6461 349 QNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV 426 (703)
Q Consensus 349 ~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 426 (703)
.+|.++..|..++..+ .|++++|+..|++++... | ....+|..+|.++...|++++|+..|++++...|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-P-----KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-c-----cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 4677788888877654 499999999999999874 3 3477899999999999999999999999999999887
Q ss_pred chHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc--CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhH
Q psy6461 427 EDLATVWCEWAELELRA-GQEEAALRLMARATA--TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKG 503 (703)
Q Consensus 427 ~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 503 (703)
.++..++.++... |++++|...+++++. ..|. ...+|..++.++...|++
T Consensus 77 ----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~------ 129 (225)
T 2vq2_A 77 ----EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT-----------------PYIANLNKGICSAKQGQF------ 129 (225)
T ss_dssp ----HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC-----------------HHHHHHHHHHHHHHTTCH------
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc-----------------hHHHHHHHHHHHHHcCCH------
Confidence 8899999999999 999999999999999 4444 367788888877776665
Q ss_pred hhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q psy6461 504 IALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL 583 (703)
Q Consensus 504 l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 583 (703)
++|...|+++++..|.+ ..++..++.++...|++++|...+++++...|
T Consensus 130 -----------------------------~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 130 -----------------------------GLAEAYLKRSLAAQPQF--PPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp -----------------------------HHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred -----------------------------HHHHHHHHHHHHhCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999998 67999999999999999999999999999999
Q ss_pred -cchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 584 -PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 584 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
.+. ..+......+...|+.+.|..+++.+++..|+++.
T Consensus 179 ~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 179 VLQA--DDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp SCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 763 34555566667789999999999999999999876
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=3.7e-16 Score=164.19 Aligned_cols=319 Identities=11% Similarity=0.013 Sum_probs=220.3
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh-
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY----KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF- 101 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~- 101 (703)
+.....|...+.... .|++++|...|+++++..|.+. .+|..++...... |++++|...|++++..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--------HDYAKALEYHHHDLTLA 77 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHH
Confidence 345677888888887 9999999999999999999985 4666666665543 8899999999999887
Q ss_pred -----cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc----cccHHHHHHHHHhcCC---------------
Q psy6461 102 -----MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH----HRVWPLYLSFVKSHAV--------------- 157 (703)
Q Consensus 102 -----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~--------------- 157 (703)
.|....++..++.++...|++++|...|++++...|.... ..++..++.++...|+
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 3445678899999999999999999999999998774211 2356666666666666
Q ss_pred -----hHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccc
Q psy6461 158 -----PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIR 232 (703)
Q Consensus 158 -----~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~ 232 (703)
+++|+..|++++...+ ..++.
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~----------------------------------------------------~~~~~-- 183 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVT----------------------------------------------------ALGDR-- 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------------------------------------------HTTCH--
T ss_pred hHHHHHHHHHHHHHHHHHHHH----------------------------------------------------hccCc--
Confidence 3333333333332110 00000
Q ss_pred cccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6461 233 SLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312 (703)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 312 (703)
.....++..+|.++...|++++|...|++++...+...+.....
T Consensus 184 ----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------------- 227 (406)
T 3sf4_A 184 ----------------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER-------------------- 227 (406)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHH--------------------
T ss_pred ----------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHH--------------------
Confidence 01235788889999999999999999999887654322111000
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCc
Q psy6461 313 NDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGK 390 (703)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 390 (703)
..+..++. ...|++++|+..|++++...+.......
T Consensus 228 ------------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 228 ------------------------------------------RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp ------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------------------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 01111111 1128888899999988876432211122
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCccccc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK--VEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHD 468 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 468 (703)
...++..+|.++...|++++|...|++++...+.. ......++..++.++...|++++|...++++++..+.....
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-- 343 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK-- 343 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--
Confidence 36688899999999999999999999999874432 22234688999999999999999999999999765431000
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 469 EAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
......+...+.++...|+.
T Consensus 344 ---------~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 344 ---------SGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTT
T ss_pred ---------cchhHHHHHHHHHHHHhhHh
Confidence 01245666777777666653
No 55
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=1.4e-13 Score=155.74 Aligned_cols=399 Identities=10% Similarity=0.039 Sum_probs=249.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-hccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLM-DQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
.|.+++|..+|+++- . +.....++. ..+++++|...++++ ..+.+|..++..+...|++++|+.
T Consensus 1062 lglyEEAf~IYkKa~----~----~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD----V----NTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred CCCHHHHHHHHHHcC----C----HHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 489999999999972 1 122222222 668899999998865 236889999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhH
Q psy6461 164 VFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGG 243 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (703)
.|.++ .+|.+....+..+...|++++|++.|..+....+ .
T Consensus 1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~------------------------e-------------- 1166 (1630)
T 1xi4_A 1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR------------------------E-------------- 1166 (1630)
T ss_pred HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc------------------------c--------------
Confidence 99886 3333333345667899999999999987753110 0
Q ss_pred hhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHH
Q psy6461 244 LRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIE 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 323 (703)
+.+-..+|..|.+.++++. .+-| +. .++..+ ++ ..+......+ .
T Consensus 1167 --------~~Idt~LafaYAKl~rlee-le~f---I~-~~n~ad---~~-~iGd~le~eg-------------------~ 1210 (1630)
T 1xi4_A 1167 --------SYVETELIFALAKTNRLAE-LEEF---IN-GPNNAH---IQ-QVGDRCYDEK-------------------M 1210 (1630)
T ss_pred --------ccccHHHHHHHHhhcCHHH-HHHH---Hh-CCCHHH---HH-HHHHHHHhcC-------------------C
Confidence 0112237777888888885 3333 22 222221 21 1211111000 0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHH
Q psy6461 324 LELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKF 401 (703)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 401 (703)
...+...|.. ...|...+..+. |+++.|++.+++|. ...+|...+..
T Consensus 1211 YeeA~~~Y~k--------------------A~ny~rLA~tLvkLge~q~AIEaarKA~-----------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1211 YDAAKLLYNN--------------------VSNFGRLASTLVHLGEYQAAVDGARKAN-----------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHh--------------------hhHHHHHHHHHHHhCCHHHHHHHHHHhC-----------CHHHHHHHHHH
Confidence 1111112221 246666665433 88888888888762 34578888888
Q ss_pred HHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhH
Q psy6461 402 YEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSI 481 (703)
Q Consensus 402 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 481 (703)
+...|++..|+..... +..+| +.+..++.+|...|.+++|+.++++++..+|.+ .
T Consensus 1260 cve~~Ef~LA~~cgl~-Iiv~~-------deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-----------------~ 1314 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-IVVHA-------DELEELINYYQDRGYFEELITMLEAALGLERAH-----------------M 1314 (1630)
T ss_pred HhhhhHHHHHHHHHHh-hhcCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-----------------h
Confidence 8888889888887764 44444 445577888888999999999999999988764 5
Q ss_pred HHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC-----CcchHHHHH
Q psy6461 482 KLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP-----PRYAKTLYL 556 (703)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~ 556 (703)
.+|..++.++.... .+++-++.+.|...+.+.| .+ ..+|.
T Consensus 1315 gmftELaiLyaKy~---------------------------------peklmEhlk~f~~rini~k~~r~~e~--~~lW~ 1359 (1630)
T 1xi4_A 1315 GMFTELAILYSKFK---------------------------------PQKMREHLELFWSRVNIPKVLRAAEQ--AHLWA 1359 (1630)
T ss_pred HHHHHHHHHHHhCC---------------------------------HHHHHHHHHHHHHhcccchHhHHHHH--HHHHH
Confidence 66666666555432 1234667777777666544 23 46899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc----------cCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHH
Q psy6461 557 LYAKLEEEHGLARHAMAVYERATGA----------VLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQM 626 (703)
Q Consensus 557 ~~a~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 626 (703)
.+..+|.+.|++++|....-..... ..+.+.++++...+.|+.+ ....+..-+..++...-++..
T Consensus 1360 elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~--~~P~~lndLl~~l~~rlD~~R--- 1434 (1630)
T 1xi4_A 1360 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTR--- 1434 (1630)
T ss_pred HHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh--hChHHHHHHHHHhhhcCChHH---
Confidence 9999999999999998433222111 1111225677777888864 666666666666643333221
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHH
Q psy6461 627 CLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNED 677 (703)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~ 677 (703)
-..++.+.|++-.+...++. ++. .++..+=+.+.+.....++++
T Consensus 1435 ---~V~l~~~~~~l~lik~yl~~-vq~---~n~~~Vneal~el~ieeed~~ 1478 (1630)
T 1xi4_A 1435 ---AVNYFSKVKQLPLVKPYLRS-VQN---HNNKSVNESLNNLFITEEDYQ 1478 (1630)
T ss_pred ---HHHHHHHcCChHHhHHHHHH-HHH---hcchhhhHHHHHHhcCccchH
Confidence 23445567777776666543 332 223445555555554444443
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=2.5e-16 Score=155.95 Aligned_cols=248 Identities=12% Similarity=-0.020 Sum_probs=195.5
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|++++|+..|++++...+. ..+..+.+|..+|..+...|++++|+..|+++++.+|.++ .+|..++.++...|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 19 LQQEVILARMEQILASRAL--TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGN 92 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHhcccc--cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHccC
Confidence 6789999999999986321 1234678999999999999999999999999999999987 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|+..|++++...|.+ ...|..++.++...|++
T Consensus 93 ~~~A~~~~~~al~~~~~~-----------------~~~~~~la~~~~~~g~~---------------------------- 127 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTY-----------------NYAHLNRGIALYYGGRD---------------------------- 127 (275)
T ss_dssp HHHHHHHHHHHHHHCTTC-----------------THHHHHHHHHHHHTTCH----------------------------
T ss_pred HHHHHHHHHHHHhcCccc-----------------cHHHHHHHHHHHHhccH----------------------------
Confidence 999999999999999985 67888888888877665
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 605 (703)
++|...|+++++..|++. ...... .+....|++++|...+++++...|.+.. .+. .+......++.+
T Consensus 128 -------~~A~~~~~~a~~~~~~~~--~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~ 194 (275)
T 1xnf_A 128 -------KLAQDDLLAFYQDDPNDP--FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQ 194 (275)
T ss_dssp -------HHHHHHHHHHHHHCTTCH--HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHH
T ss_pred -------HHHHHHHHHHHHhCCCCh--HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCcchH--HHH-HHHHHHHhcCHH
Confidence 999999999999999983 233333 3345679999999999999999887643 222 344445567788
Q ss_pred HHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q psy6461 606 KTRQIYERAIESLPEEP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 682 (703)
+|...++++++..|... ...+|..++.++...|++++|+..|+++++..|.+ +..+.......|.++++.+.
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-----FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-----CHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-----HHHHHHHHHHHHHHHhhHHH
Confidence 99999999998877432 13488999999999999999999999999985433 23334444455555555443
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=3e-16 Score=165.52 Aligned_cols=295 Identities=12% Similarity=0.047 Sum_probs=211.5
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh-
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY----KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF- 101 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~- 101 (703)
|.....+...+.... .|++++|+..|+++++..|.+. .+|..++..+... |++++|...|++++..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~ 116 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL--------GDYNKAMQYHKHDLTLA 116 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHH
Confidence 445566667777777 9999999999999999999987 4677777666554 8999999999999988
Q ss_pred -----cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc----cccccHHHHHHHHHhcCC---------------
Q psy6461 102 -----MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT----QHHRVWPLYLSFVKSHAV--------------- 157 (703)
Q Consensus 102 -----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~--------------- 157 (703)
.|....+|..++.++...|++++|...|++++...+.. ....++..++.++...|+
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 56677899999999999999999999999999974311 234466667777777776
Q ss_pred --hHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcccccccc
Q psy6461 158 --PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLN 235 (703)
Q Consensus 158 --~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~ 235 (703)
+++|+..|+++++..+. . +.
T Consensus 197 ~~~~~A~~~~~~al~~~~~------------------------~----------------------------~~------ 218 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRD------------------------L----------------------------GD------ 218 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------------------H----------------------------TC------
T ss_pred HHHHHHHHHHHHHHHHHHH------------------------c----------------------------CC------
Confidence 44444444443322100 0 00
Q ss_pred HHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy6461 236 VDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDT 315 (703)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~ 315 (703)
+.....++..+|.++...|++++|...|++++...+...+....
T Consensus 219 ------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------------------ 262 (411)
T 4a1s_A 219 ------------RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE------------------------ 262 (411)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH------------------------
T ss_pred ------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH------------------------
Confidence 00123578889999999999999999999988765432211000
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCchhH
Q psy6461 316 PSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHT 393 (703)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 393 (703)
...+..++. ...|++++|+..|++++...+..........
T Consensus 263 --------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 263 --------------------------------------RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp --------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 001111111 1238888999999998876432211112357
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTK--VEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
++..+|.++...|++++|+..|++++...+.. ......++..++.++...|++++|...|++++...+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999874432 1223468889999999999999999999999998864
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.71 E-value=3.5e-16 Score=167.59 Aligned_cols=221 Identities=9% Similarity=0.021 Sum_probs=187.3
Q ss_pred chhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCCh-HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCH
Q psy6461 368 PLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL-EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446 (703)
Q Consensus 368 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (703)
.+.++..++++... +| ....+|..+|..+...|++ ++|+..|+++++.+|.++ .+|..++.++...|++
T Consensus 84 ~~~al~~l~~~~~~-~~-----~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQ-----VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV----EAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHTT-CC-----CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcc-Cc-----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCH
Confidence 34566666665543 22 4678999999999999999 999999999999999987 8999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhc--CChhHHHhHhhcCCCCchHHHHHHHHHHHH
Q psy6461 447 EAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESF--GTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524 (703)
Q Consensus 447 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~al~~~~~~~~~~~~~~y~~~~~ 524 (703)
++|+..|+++++..|+ ...|..++.++... +.. .
T Consensus 154 ~~A~~~~~~al~~~p~------------------~~~~~~lg~~~~~~~~~~~--------------------------~ 189 (474)
T 4abn_A 154 TSAHTCFSGALTHCKN------------------KVSLQNLSMVLRQLQTDSG--------------------------D 189 (474)
T ss_dssp HHHHHHHHHHHTTCCC------------------HHHHHHHHHHHTTCCCSCH--------------------------H
T ss_pred HHHHHHHHHHHhhCCC------------------HHHHHHHHHHHHHhccCCh--------------------------h
Confidence 9999999999999997 57788888777765 111 0
Q ss_pred HHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc--------CChHHHHHHHHHHhhccC---cchHHHHHHH
Q psy6461 525 SRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH--------GLARHAMAVYERATGAVL---PEEMFEMFNI 593 (703)
Q Consensus 525 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~~~ 593 (703)
. ..+++++|...|+++++.+|++ ...|..+|.++... |++++|+..|+++++..| .+ ...|..
T Consensus 190 ~--~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~ 263 (474)
T 4abn_A 190 E--HSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN--PDLHLN 263 (474)
T ss_dssp H--HHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC--HHHHHH
T ss_pred h--hhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC--HHHHHH
Confidence 0 0133599999999999999998 67999999999998 999999999999999999 66 557777
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 594 YIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
+...+...|++++|...|+++++..|+++. .+..++.++...|++++|+..+.+.
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALDPAWPE--PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 788888899999999999999999999876 8999999999999999999876543
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=3.3e-16 Score=165.17 Aligned_cols=293 Identities=9% Similarity=0.009 Sum_probs=216.5
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH-HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF-TQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
..+..+|..+...|++++|+..|+++++..|+.... ..++...+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~---------------------------------- 94 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGN---------------------------------- 94 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHH----------------------------------
Confidence 467788999999999999999999999987753211 111111110
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
+....|++++|+..|++++.........+....++..+|.++...|++++|
T Consensus 95 -----------------------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 145 (411)
T 4a1s_A 95 -----------------------------AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA 145 (411)
T ss_dssp -----------------------------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------------HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHH
Confidence 001128889999999998876322111234578899999999999999999
Q ss_pred HHHHHHhhccCCC--CcchHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 412 RLIFDKATLVPYT--KVEDLATVWCEWAELELRAGQ-----------------EEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 412 ~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
...|++++...+. +......++..++.++...|+ +++|...+++++...+.....
T Consensus 146 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~------ 219 (411)
T 4a1s_A 146 AICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR------ 219 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH------
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH------
Confidence 9999999987321 112234789999999999999 899999998887654221000
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc--
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY-- 550 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 550 (703)
......+..++.++...|+ +++|...|+++++..|...
T Consensus 220 -----~~~~~~~~~la~~~~~~g~-----------------------------------~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 220 -----GAQGRACGNLGNTYYLLGD-----------------------------------FQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp -----HHHHHHHHHHHHHHHHTTC-----------------------------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred -----HHHHHHHHHHHHHHHHcCC-----------------------------------hHHHHHHHHHHHHHHHhcCCc
Confidence 0023455555656555554 4999999999999876531
Q ss_pred --hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc----hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc--
Q psy6461 551 --AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE----EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP-- 622 (703)
Q Consensus 551 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 622 (703)
...++..++.++...|++++|...|++++...+.. ....++......+...|++++|...|+++++..++..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 12488999999999999999999999999887643 2245666777777889999999999999999865332
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 623 --TRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 623 --~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
...++..++.++...|++++|...|++|+++.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 13478889999999999999999999999985
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.70 E-value=1.6e-15 Score=154.48 Aligned_cols=292 Identities=11% Similarity=0.017 Sum_probs=202.6
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh----
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY----KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF---- 101 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 101 (703)
...|...+.... .|++++|...|+++++..|.+. .+|..++...... |++++|...|++++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--------HDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHhhcc
Confidence 456677777777 9999999999999999999995 5566666665543 8899999999999887
Q ss_pred --cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc----cccHHHHHHHHHhcCC------------------
Q psy6461 102 --MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH----HRVWPLYLSFVKSHAV------------------ 157 (703)
Q Consensus 102 --~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~------------------ 157 (703)
.|....++..++.++...|++++|...|+++++..|.... ..++..++.++...|+
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 3445688899999999999999999999999998763211 2255566666666666
Q ss_pred --hHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcccccccc
Q psy6461 158 --PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLN 235 (703)
Q Consensus 158 --~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~ 235 (703)
+++|+..+++++... ... ++
T Consensus 157 ~~~~~A~~~~~~a~~~~------------------------~~~----------------------------~~------ 178 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLV------------------------TAL----------------------------GD------ 178 (338)
T ss_dssp HHHHHHHHHHHHHHHHH------------------------HHH----------------------------TC------
T ss_pred HHHHHHHHHHHHHHHHH------------------------Hhc----------------------------CC------
Confidence 333333333332211 000 00
Q ss_pred HHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy6461 236 VDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDT 315 (703)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~ 315 (703)
+.....++..+|..+...|++++|...|++++...+...+....
T Consensus 179 ------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------------------------ 222 (338)
T 3ro2_A 179 ------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE------------------------ 222 (338)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH------------------------
T ss_pred ------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHH------------------------
Confidence 00113578888999999999999999999988764432211000
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCccCCchhH
Q psy6461 316 PSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKLAVGKLHT 393 (703)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 393 (703)
...+..++.+ ..|++++|...|++++...+..........
T Consensus 223 --------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 223 --------------------------------------RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 0011111111 128888899999888876332211122366
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTK--VEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
++..+|.++...|++++|...|++++...+.. ......++..++.++...|++++|...+++++...+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88889999999999999999999998874422 2223468889999999999999999999999988764
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.70 E-value=3.8e-16 Score=159.21 Aligned_cols=294 Identities=11% Similarity=0.004 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH-HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF-TQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
..+...|..+...|++++|...|+++++..|+.... ..++...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~----------------------------------- 50 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLG----------------------------------- 50 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-----------------------------------
Confidence 467788999999999999999999999987653211 11111100
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
.+....|++++|+..|++++.........+....++..+|.++...|++++|
T Consensus 51 ----------------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 102 (338)
T 3ro2_A 51 ----------------------------NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102 (338)
T ss_dssp ----------------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------------------HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHH
Confidence 0111128889999999998776322111223567899999999999999999
Q ss_pred HHHHHHhhccCCCCc--chHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHhcCCCCCcccccc
Q psy6461 412 RLIFDKATLVPYTKV--EDLATVWCEWAELELRAGQ--------------------EEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 412 ~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
...|++++...+... .....++..++.++...|+ +++|...+++++...+....
T Consensus 103 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~---- 178 (338)
T 3ro2_A 103 IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD---- 178 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 999999998754332 2234588999999999999 89999988888765321000
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
.......+..++.++...|+ +++|...++++++..|..
T Consensus 179 -------~~~~~~~~~~l~~~~~~~~~-----------------------------------~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 179 -------RAAQGRAFGNLGNTHYLLGN-----------------------------------FRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTC-----------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHhCC-----------------------------------HHHHHHHHHHHHHHHHhc
Confidence 00013445555555555554 489999999998875543
Q ss_pred c----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch----HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCc
Q psy6461 550 Y----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE----MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 550 ~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (703)
. ....+..++.++...|++++|...+++++...+... ....+......+...|++++|...++++++..|..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1 124889999999999999999999999998765431 23455566677777899999999999999876533
Q ss_pred c----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 622 P----TRQMCLKFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 622 ~----~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
. ...++..++.++...|++++|...|++++++.+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 2 133778889999999999999999999998854
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=9.5e-16 Score=170.57 Aligned_cols=142 Identities=14% Similarity=0.204 Sum_probs=132.7
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
.+|++.++|..++..+. +|++++|...|+++++.+|++...|..++..+... |++++|...|++|++.+|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~--------g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ--------GKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTT
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCC
Confidence 47999999999999998 99999999999999999999999999999988765 8999999999999999999
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
++.+|..+|.++..+|++++|...|+++++.+| .+..+|..++.++...|++++|+..|+++++.+|++..
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 146 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999999999999 56889999999999999999999999999999998853
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=7.3e-14 Score=148.57 Aligned_cols=193 Identities=15% Similarity=0.047 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHHcC---ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCc
Q psy6461 392 HTLWIEFGKFYEVND---QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA----GQEEAALRLMARATATPARPV 464 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~p~~~ 464 (703)
+.++..+|.++...| ++++|+..|+++....|... ..++.++.++... +++++|+.+|+++. |++
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a----~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~- 247 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA----QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY- 247 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-
Confidence 347888999999898 99999999999999887765 6668888887554 68999999999988 553
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
+..++.++.++.... ..+++++|...|+++.+
T Consensus 248 ----------------~~a~~~Lg~~~~~~~--------------------------------~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 248 ----------------PASWVSLAQLLYDFP--------------------------------ELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp ----------------THHHHHHHHHHHHSG--------------------------------GGCCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCC--------------------------------CCCCHHHHHHHHHHHHH
Confidence 567777776632110 12456999999999987
Q ss_pred hCCCcchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcCchHHHHHHHHHH
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHG-----LARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYGIPKTRQIYERAI 615 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al 615 (703)
.. + +..+..+|.++. .| ++++|+..|+++. +.+.......+ .++.. ..++++|...|+++.
T Consensus 280 ~g--~--~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg--~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 280 AD--Q--PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLG--QIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp TT--C--HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHH--HHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred CC--C--HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHH--HHHHCCCCCCcCHHHHHHHHHHHH
Confidence 54 3 568889998887 56 9999999999999 55543333333 33322 238899999999998
Q ss_pred HhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccc
Q psy6461 616 ESLPEEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 616 ~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~ 654 (703)
+.. ++. ....++.++.. ..+.++|..+|++|.+..
T Consensus 350 ~~g--~~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 350 RNG--QNS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTT--CTT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hhC--hHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 753 334 56677777664 357999999999999873
No 64
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=4.4e-15 Score=157.99 Aligned_cols=212 Identities=9% Similarity=0.026 Sum_probs=141.8
Q ss_pred CchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHc----CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHH-H-
Q psy6461 367 KPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVN----DQLEDARLIFDKATLVPYTKVEDLATVWCEWAEL-E- 440 (703)
Q Consensus 367 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~- 440 (703)
+..+|+..|+++...-++ ....+..++.+|... +++++|+..|+++. |.++ ..++.++.+ +
T Consensus 194 ~~~~A~~~~~~aa~~g~~------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~----~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTV------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP----ASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST----HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH----HHHHHHHHHHHh
Confidence 667788888888876322 345567888888654 78899999999987 6666 788888887 3
Q ss_pred -HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHH
Q psy6461 441 -LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTY 519 (703)
Q Consensus 441 -~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y 519 (703)
...+++++|..+|+++.... ++..++.++.++. .|.-
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~g-------------------~~~A~~~Lg~~y~-~G~g---------------------- 298 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAAD-------------------QPRAELLLGKLYY-EGKW---------------------- 298 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHH-HCSS----------------------
T ss_pred CCCCCCHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHH-cCCC----------------------
Confidence 35789999999999988654 2566777776665 3311
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHHHHHHHHH
Q psy6461 520 LTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMFEMFNIYI 595 (703)
Q Consensus 520 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 595 (703)
...++++|...|+++. |.+ +..+..+|.++.. .+++++|+..|+++.+...... ....+.+
T Consensus 299 --------~~~d~~~A~~~~~~Aa---~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A--~~~Lg~~ 363 (452)
T 3e4b_A 299 --------VPADAKAAEAHFEKAV---GRE--VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA--DFAIAQL 363 (452)
T ss_dssp --------SCCCHHHHHHHHHTTT---TTC--HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH--HHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHh---CCC--HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH--HHHHHHH
Confidence 1235688999999988 666 5688888888766 3388999999999988654432 2222222
Q ss_pred HHHH--HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc
Q psy6461 596 KKAA--EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETK--LGEIDRARAIYAHCSQ 652 (703)
Q Consensus 596 ~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~--~g~~~~A~~~~~~a~~ 652 (703)
...- -.++..+|...|+++.+..+. . ....+..+... .++..+|..+.++..+
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~--~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTP--E--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCH--H--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCH--H--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2110 134788899999998887543 2 22333333322 2346667766666554
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.66 E-value=1.2e-14 Score=139.39 Aligned_cols=212 Identities=8% Similarity=-0.035 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY-TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
.+..|+..|..+...|++++|+..|+++++..| .+. .++..+|.++...|++++|+..|++++..+|++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------ 75 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL------ 75 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch------
Confidence 357889999999999999999999999999987 665 778889999999999999999999999999984
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
..+|..++.++...|++ ++|...|+++++..|++
T Consensus 76 -----------~~~~~~l~~~~~~~~~~-----------------------------------~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 76 -----------ANAYIGKSAAYRDMKNN-----------------------------------QEYIATLTEGIKAVPGN 109 (228)
T ss_dssp -----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHSTTC
T ss_pred -----------HHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHHHHHCCCc
Confidence 78888888888877765 99999999999999998
Q ss_pred chH-----HHHHHHHHHHHHcCChHHHHHHHHHHhhccCc--chHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc
Q psy6461 550 YAK-----TLYLLYAKLEEEHGLARHAMAVYERATGAVLP--EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP 622 (703)
Q Consensus 550 ~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 622 (703)
... .+|..+|.++...|++++|+..|+++++..|+ +. ..+......+.. .+..+++++....+.+.
T Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~l~~~~~~-----~~~~~~~~a~~~~~~~~ 182 (228)
T 4i17_A 110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT--DALYSLGVLFYN-----NGADVLRKATPLASSNK 182 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH--HHHHHHHHHHHH-----HHHHHHHHHGGGTTTCH
T ss_pred HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH--HHHHHHHHHHHH-----HHHHHHHHHHhcccCCH
Confidence 311 56899999999999999999999999999998 53 344433333332 34566777887776653
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 623 TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 623 ~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
. .+ ........|.+++|+..|++++++. |+ +..+...+..+..
T Consensus 183 ~--~~--~~~~~~~~~~~~~A~~~~~~a~~l~-p~-~~~~~~~l~~i~~ 225 (228)
T 4i17_A 183 E--KY--ASEKAKADAAFKKAVDYLGEAVTLS-PN-RTEIKQMQDQVKA 225 (228)
T ss_dssp H--HH--HHHHHHHHHHHHHHHHHHHHHHHHC-TT-CHHHHHHHHHHHT
T ss_pred H--HH--HHHHHHHHHHHHHHHHHHHHHhhcC-CC-CHHHHHHHHHHHH
Confidence 2 22 2334456778999999999999995 44 5777777766543
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.66 E-value=3.4e-15 Score=159.94 Aligned_cols=213 Identities=10% Similarity=0.030 Sum_probs=188.9
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHH
Q psy6461 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE-EAALRLMARATATPARPVAYHDEAETVQARVYKSIKLW 484 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
+.+++++..++++....|.+. .+|+.+|..+...|++ ++|+..|+++++.+|++ ...|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a----~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-----------------~~a~ 140 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEA----QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-----------------VEAW 140 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCH----HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-----------------HHHH
T ss_pred HHHHHHHHHHHHHhccCchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-----------------HHHH
Confidence 347788888888888888776 8999999999999999 99999999999999985 7899
Q ss_pred HHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q psy6461 485 SLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE 564 (703)
Q Consensus 485 ~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 564 (703)
..++.++...|++ ++|...|+++++.+|+ ...+..+|.++..
T Consensus 141 ~~lg~~~~~~g~~-----------------------------------~~A~~~~~~al~~~p~---~~~~~~lg~~~~~ 182 (474)
T 4abn_A 141 NQLGEVYWKKGDV-----------------------------------TSAHTCFSGALTHCKN---KVSLQNLSMVLRQ 182 (474)
T ss_dssp HHHHHHHHHHTCH-----------------------------------HHHHHHHHHHHTTCCC---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHhhCCC---HHHHHHHHHHHHH
Confidence 9999888887775 9999999999999998 3689999999999
Q ss_pred c---------CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh--------cCchHHHHHHHHHHHhCC---CcchH
Q psy6461 565 H---------GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI--------YGIPKTRQIYERAIESLP---EEPTR 624 (703)
Q Consensus 565 ~---------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~ 624 (703)
. |++++|+..|+++++..|++. ..|..+...+... |++++|...|+++++..| +++.
T Consensus 183 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~- 259 (474)
T 4abn_A 183 LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG--RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD- 259 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH-
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH-
Confidence 9 999999999999999999984 4666666666666 889999999999999999 7665
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 625 QMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 625 ~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
+|..++.++...|++++|+..|++|+++. |+ ....|..+.......|..++|.+..
T Consensus 260 -~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 260 -LHLNRATLHKYEESYGEALEGFSQAAALD-PA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999994 44 5888999999999999888887643
No 67
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=6.6e-14 Score=138.44 Aligned_cols=230 Identities=11% Similarity=0.050 Sum_probs=179.8
Q ss_pred CCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH----cCChHHHHHHHHHhhccCC
Q psy6461 350 NPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV----NDQLEDARLIFDKATLVPY 423 (703)
Q Consensus 350 ~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~ 423 (703)
+|.++.+++.++.++ .|++++|+..|+++++. ..+.++..+|.++.. .+++++|+..|+++++..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 466677777776644 38899999999998872 245688889999998 999999999999998874
Q ss_pred CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhH
Q psy6461 424 TKVEDLATVWCEWAELELR----AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKA 499 (703)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (703)
++ ..+..++.++.. .+++++|+..|++++... ++..+..++.++.....
T Consensus 73 -~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------------------~~~a~~~lg~~~~~~~~--- 125 (273)
T 1ouv_A 73 -YS----NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-------------------YAEGCASLGGIYHDGKV--- 125 (273)
T ss_dssp -CH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHCSS---
T ss_pred -CH----HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-------------------CccHHHHHHHHHHcCCC---
Confidence 44 788899999988 999999999999998874 26777777777766100
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHH
Q psy6461 500 YEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVY 575 (703)
Q Consensus 500 ~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~ 575 (703)
..+++++|...|+++++..+ +..+..++.++.. .|++++|+..|
T Consensus 126 ----------------------------~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 173 (273)
T 1ouv_A 126 ----------------------------VTRDFKKAVEYFTKACDLND----GDGCTILGSLYDAGRGTPKDLKKALASY 173 (273)
T ss_dssp ----------------------------SCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred ----------------------------cccCHHHHHHHHHHHHhcCc----HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 02345899999999998763 4578889999888 89999999999
Q ss_pred HHHhhccCcchHHHHHHHHHHHHHH----hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHH
Q psy6461 576 ERATGAVLPEEMFEMFNIYIKKAAE----IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETK----LGEIDRARAIY 647 (703)
Q Consensus 576 ~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~ 647 (703)
+++++..+. ..+......+.. .+++++|...|+++++..| ...+..++.++.. .|++++|+.+|
T Consensus 174 ~~a~~~~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 174 DKACDLKDS----PGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp HHHHHTTCH----HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred HHHHHCCCH----HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 999987543 344455556666 7899999999999999866 3378888888888 89999999999
Q ss_pred HHHhcccC
Q psy6461 648 AHCSQICD 655 (703)
Q Consensus 648 ~~a~~~~~ 655 (703)
++|++..+
T Consensus 246 ~~a~~~~~ 253 (273)
T 1ouv_A 246 KKGCKLGA 253 (273)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99998843
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.64 E-value=4.7e-15 Score=165.04 Aligned_cols=171 Identities=11% Similarity=0.063 Sum_probs=135.6
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCccccc
Q psy6461 389 GKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHD 468 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 468 (703)
|+.++++..+|.++...|++++|+..|+++++++|++. ..|..+|.++.+.|++++|+..|++|++.+|++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----- 76 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----AAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----- 76 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Confidence 34677788888888888888888888888888888776 778888888888888888888888888888874
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 469 EAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
...|..++.++...|++ ++|++.|+++++++|+
T Consensus 77 ------------~~a~~nLg~~l~~~g~~-----------------------------------~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 77 ------------ADAYSNMGNTLKEMQDV-----------------------------------QGALQCYTRAIQINPA 109 (723)
T ss_dssp ------------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTT
T ss_pred ------------HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCCC
Confidence 67777777777776664 7888888888888888
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q psy6461 549 RYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLP 619 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (703)
+ ..+|..+|.++...|++++|+..|+++++..|++ ...+..++..+...+++++|.+.|+++++..|
T Consensus 110 ~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 110 F--ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF--PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 7 5688888888888888888888888888888877 44566666677777888888888888887654
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.62 E-value=2.6e-14 Score=137.09 Aligned_cols=195 Identities=9% Similarity=0.018 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC-CCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCC
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPA-RPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKW 509 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~ 509 (703)
..|+..|..+...|++++|+..|++++...| .+ ...+...+.++...|++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-----------------~~~~~~~~~~~~~~~~~------------ 58 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-----------------SVTAYNCGVCADNIKKY------------ 58 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-----------------HHHHHHHHHHHHHTTCH------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-----------------cHHHHHHHHHHHHhhcH------------
Confidence 7899999999999999999999999999997 53 66777777777776665
Q ss_pred CchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH-
Q psy6461 510 PYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF- 588 (703)
Q Consensus 510 ~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~- 588 (703)
++|...|+++++.+|++ ..+|..+|.++...|++++|+..|+++++..|++...
T Consensus 59 -----------------------~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 113 (228)
T 4i17_A 59 -----------------------KEAADYFDIAIKKNYNL--ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIE 113 (228)
T ss_dssp -----------------------HHHHHHHHHHHHTTCSH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred -----------------------HHHHHHHHHHHHhCcch--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence 99999999999999998 6799999999999999999999999999999998533
Q ss_pred ----HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHh
Q psy6461 589 ----EMFNIYIKKAAEIYGIPKTRQIYERAIESLPE--EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGF 662 (703)
Q Consensus 589 ----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 662 (703)
.+|..........|++++|...|+++++..|+ ++. .|..++.++...| ...++++..+.+.+ ...
T Consensus 114 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~l~~~~~~~~-----~~~~~~a~~~~~~~--~~~ 184 (228)
T 4i17_A 114 KLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD--ALYSLGVLFYNNG-----ADVLRKATPLASSN--KEK 184 (228)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH--HHHHHHHHHHHHH-----HHHHHHHGGGTTTC--HHH
T ss_pred HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH--HHHHHHHHHHHHH-----HHHHHHHHhcccCC--HHH
Confidence 45666666777789999999999999999998 655 8888888886655 45567777774333 222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 663 WAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 663 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
+ ........|.+++|...++.+..+.
T Consensus 185 ~--~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 185 Y--ASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2 2333455577888888887666553
No 70
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=4e-13 Score=132.76 Aligned_cols=225 Identities=12% Similarity=0.063 Sum_probs=189.8
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR----AGQEEAALRLMARATATPARPVA 465 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~ 465 (703)
+.+.+++.+|..+...|++++|+..|+++++ |.++ ..+..++.++.. .+++++|...|+++++.. +
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-- 73 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-- 73 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C--
Confidence 4577899999999999999999999999998 5565 789999999999 999999999999999885 1
Q ss_pred cccchhhHHHHHHhhHHHHHHHHHHHHh----cCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy6461 466 YHDEAETVQARVYKSIKLWSLYADLEES----FGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQ 541 (703)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~ 541 (703)
+..+..++.++.. .++ +++|...|++
T Consensus 74 ---------------~~a~~~lg~~~~~g~~~~~~-----------------------------------~~~A~~~~~~ 103 (273)
T 1ouv_A 74 ---------------SNGCHLLGNLYYSGQGVSQN-----------------------------------TNKALQYYSK 103 (273)
T ss_dssp ---------------HHHHHHHHHHHHHTSSSCCC-----------------------------------HHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhCCCCcccC-----------------------------------HHHHHHHHHH
Confidence 6778888877776 444 5999999999
Q ss_pred HHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcCchHHHHHHHH
Q psy6461 542 CLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYGIPKTRQIYER 613 (703)
Q Consensus 542 al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~ 613 (703)
+++.. + +..+..++.++.. .|++++|...|+++++..+.. .+..+...+.. .+++++|...|++
T Consensus 104 a~~~~--~--~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 175 (273)
T 1ouv_A 104 ACDLK--Y--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD----GCTILGSLYDAGRGTPKDLKKALASYDK 175 (273)
T ss_dssp HHHTT--C--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHcC--C--ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99974 3 5789999999999 999999999999999987533 44445555555 7899999999999
Q ss_pred HHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHH
Q psy6461 614 AIESLPEEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT----HGNEDTMREMLRI 685 (703)
Q Consensus 614 al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 685 (703)
+++..+ ...+..++.++.. .|++++|+.+|+++++.. ++..+..++.+... .|+.++|.+.+++
T Consensus 176 a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 176 ACDLKD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHTTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHCCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 998743 3378899999999 999999999999999873 36688888888888 8999999999976
Q ss_pred HHHHH
Q psy6461 686 KRSVQ 690 (703)
Q Consensus 686 ~~~~~ 690 (703)
+..+.
T Consensus 248 a~~~~ 252 (273)
T 1ouv_A 248 GCKLG 252 (273)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 66543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=152.42 Aligned_cols=254 Identities=15% Similarity=0.105 Sum_probs=180.7
Q ss_pred hcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCc--cCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-
Q psy6461 348 RQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKL--AVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP- 422 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~- 422 (703)
..+|.....|..++..+ .|++++|+..|++++....... ..+....++..+|.++...|++++|+..|++++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44677777787777654 3999999999999988521110 112457889999999999999999999999999873
Q ss_pred ----CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-----CCCcccccchhhHHHHHHhhHHHHHHHHHHHHh
Q psy6461 423 ----YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP-----ARPVAYHDEAETVQARVYKSIKLWSLYADLEES 493 (703)
Q Consensus 423 ----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (703)
+..+ ....++..++.++...|++++|...|++++... ++. ......+..++.++..
T Consensus 101 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~la~~~~~ 165 (311)
T 3nf1_A 101 KTLGKDHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH--------------PDVAKQLNNLALLCQN 165 (311)
T ss_dssp HHHCTTCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHHT
T ss_pred HHhCCCCh-HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC--------------hHHHHHHHHHHHHHHH
Confidence 2222 334789999999999999999999999998764 221 0124566666666666
Q ss_pred cCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHHHc
Q psy6461 494 FGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA--------CPPRYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 494 ~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~a~~~~~~ 565 (703)
.|+ +++|...|+++++. .|.. ..++..++.++...
T Consensus 166 ~~~-----------------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~la~~~~~~ 208 (311)
T 3nf1_A 166 QGK-----------------------------------YEEVEYYYQRALEIYQTKLGPDDPNV--AKTKNNLASCYLKQ 208 (311)
T ss_dssp TTC-----------------------------------HHHHHHHHHHHHHHHHHTSCTTCHHH--HHHHHHHHHHHHHH
T ss_pred cCC-----------------------------------HHHHHHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHHHHc
Confidence 555 48999999999987 4443 46899999999999
Q ss_pred CChHHHHHHHHHHhhccCcc---------hH----HHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHH
Q psy6461 566 GLARHAMAVYERATGAVLPE---------EM----FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAE 632 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~---------~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 632 (703)
|++++|...|++++...|.. .. ...+..........+.+.++...+.+++...|.... ++..++.
T Consensus 209 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~la~ 286 (311)
T 3nf1_A 209 GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTT--TLKNLGA 286 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHH--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHH--HHHHHHH
Confidence 99999999999999865431 10 111222222223356778888888888887776544 8999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcccC
Q psy6461 633 METKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 633 ~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
++.+.|++++|...|++|+++.+
T Consensus 287 ~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 287 LYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999998843
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=1.3e-13 Score=143.86 Aligned_cols=240 Identities=12% Similarity=0.018 Sum_probs=176.9
Q ss_pred hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHHHH
Q psy6461 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV---EDLATVWCEWAELE 440 (703)
Q Consensus 364 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~ 440 (703)
..|++++|+..|++++..............++..+|.++...|++++|+..|++++...+... .....++..+|.++
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 349999999999999886332222223568899999999999999999999999998854432 22356889999999
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHH
Q psy6461 441 LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYL 520 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~ 520 (703)
...|++++|...|++++...+...+. ......+..++.++...|+
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~lg~~y~~~g~------------------------ 239 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQP-----------QLMGRTLYNIGLCKNSQSQ------------------------ 239 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHHHHHHCCC------------------------
Confidence 99999999999999999775532000 0013456666666666655
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHH-----hC-CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch---HHHHH
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLE-----AC-PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE---MFEMF 591 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 591 (703)
+++|...|+++++ .. |.. ..++..+|.++...|++++|...+++++...+... ....+
T Consensus 240 -----------~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 306 (383)
T 3ulq_A 240 -----------YEDAIPYFKRAIAVFEESNILPSL--PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306 (383)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTTCGGGH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4999999999999 44 554 57899999999999999999999999998864321 11122
Q ss_pred HHHHHHHHHhcC---chHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 592 NIYIKKAAEIYG---IPKTRQIYERAIESLPEEP-TRQMCLKFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 592 ~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
..........|+ +.+|..++++. +..+ ...++..++.++...|++++|...|++++++.+
T Consensus 307 ~~l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 307 EFLKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334444444566 66677766665 2222 234778899999999999999999999988743
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.60 E-value=1.7e-13 Score=134.44 Aligned_cols=199 Identities=12% Similarity=0.040 Sum_probs=141.3
Q ss_pred HhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHH
Q psy6461 24 ILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSL 99 (703)
Q Consensus 24 l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 99 (703)
...+|.+.+.+...+.... .|++++|...|+++++.+|.+ ...|..++..+... |++++|...|++++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~~l 79 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN--------KEYLLAASEYERFI 79 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh--------CcHHHHHHHHHHHH
Confidence 3467899999999998888 999999999999999999999 88888888877654 88999999999999
Q ss_pred HhcCCC---HHHHHHHHHHHHh--------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHH
Q psy6461 100 VFMHKM---PRIWLDYGRFLMD--------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168 (703)
Q Consensus 100 ~~~p~~---~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 168 (703)
+..|++ +.++..++.++.. .|++++|...|+++++..|.+ ...+.....+....+.. +..
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~a~~~~~~~~~~~--~~~----- 150 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH--ELVDDATQKIRELRAKL--ARK----- 150 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC--TTHHHHHHHHHHHHHHH--HHH-----
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc--hhHHHHHHHHHHHHHHH--HHH-----
Confidence 998865 5678899999998 999999999999999999953 45553332221111000 000
Q ss_pred HhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhc
Q psy6461 169 LKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYT 248 (703)
Q Consensus 169 l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (703)
.......+...|++++|+..|++++.. +|+..
T Consensus 151 -------~~~la~~~~~~g~~~~A~~~~~~~l~~------------------------~p~~~----------------- 182 (261)
T 3qky_A 151 -------QYEAARLYERRELYEAAAVTYEAVFDA------------------------YPDTP----------------- 182 (261)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTTST-----------------
T ss_pred -------HHHHHHHHHHccCHHHHHHHHHHHHHH------------------------CCCCc-----------------
Confidence 001123344556666666665555421 11100
Q ss_pred cchhhHHHHHHHHHHHh----------CchHHHHHHHHHHHhhcCCcccH
Q psy6461 249 DQLGHLWNSLADYYIRS----------GLFERARDIYEEAIQTVTTVRDF 288 (703)
Q Consensus 249 ~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~l~~~~~~~~~ 288 (703)
....++..+|..|... |++++|...|+++++..|+....
T Consensus 183 -~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 183 -WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp -THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred -hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 1135677888888766 89999999999999999976533
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.60 E-value=6.9e-14 Score=137.28 Aligned_cols=192 Identities=14% Similarity=0.004 Sum_probs=142.6
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
..+..++..|..+...|++++|+..|+++++..|.++ ....+++.+|.++.+.|++++|+..|++++...|++.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~----- 86 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP----- 86 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-----
Confidence 4577889999999999999999999999999998873 1138899999999999999999999999999988641
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
.....++..+.++...+.. .....+++++|...|+++++..|++
T Consensus 87 ---------~~~~a~~~lg~~~~~~~~~---------------------------~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 87 ---------RVPQAEYERAMCYYKLSPP---------------------------YELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp ---------THHHHHHHHHHHHHHHCCC---------------------------TTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred ---------hhHHHHHHHHHHHHHhccc---------------------------ccccchhHHHHHHHHHHHHHHCcCc
Confidence 1256677777666652110 0001234599999999999999987
Q ss_pred ch-HHHH--------------HHHHHHHHHcCChHHHHHHHHHHhhccCcch-HHHHHHHHHHHHHHh----------cC
Q psy6461 550 YA-KTLY--------------LLYAKLEEEHGLARHAMAVYERATGAVLPEE-MFEMFNIYIKKAAEI----------YG 603 (703)
Q Consensus 550 ~~-~~~~--------------~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~----------~~ 603 (703)
.. ..+. +.+|.++...|++++|+..|+++++..|++. ....+...+..+... |+
T Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~ 210 (261)
T 3qky_A 131 ELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER 210 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch
Confidence 32 1122 6778888888888888888888888888743 223333333333333 67
Q ss_pred chHHHHHHHHHHHhCCCcch
Q psy6461 604 IPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~ 623 (703)
+++|...|+++++..|+++.
T Consensus 211 ~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 211 YRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHHHHCCCChH
Confidence 78888888888888888764
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.59 E-value=1.2e-13 Score=127.31 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
..++..+|..+...|++++|+..|+++++..|.++ .++..++.++...|++++|...+++++...|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 75 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----DVALHLGIAYVKTGAVDRGTELLERSLADAPDN-------- 75 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------
Confidence 44566666667777777777777777777666665 666677777777777777777777777666653
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
..+|..++.++...|++ ++|...|+++++..|.+
T Consensus 76 ---------~~~~~~~a~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~-- 109 (186)
T 3as5_A 76 ---------VKVATVLGLTYVQVQKY-----------------------------------DLAVPLLIKVAEANPIN-- 109 (186)
T ss_dssp ---------HHHHHHHHHHHHHHTCH-----------------------------------HHHHHHHHHHHHHCTTC--
T ss_pred ---------HHHHHHHHHHHHHhcCH-----------------------------------HHHHHHHHHHHhcCcHh--
Confidence 55566666555555443 66777777777766665
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCc
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (703)
...+..++.++...|++++|...+++++...|.+ ...+...+..+...|++++|...++++++..|++
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE--GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4566666666666666666666666666665554 2333444444444455555555555555554443
No 76
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=3e-14 Score=145.07 Aligned_cols=377 Identities=12% Similarity=0.108 Sum_probs=181.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|++++|...++++ +++.+|..+|..+...|++++|...|.++ | ++..|...+......|++++|+..+
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~---D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----D---DPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----C---CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6688888888887 34579999999999999999999999874 2 2346777777777788899999988
Q ss_pred HHHHhhCCCCH--HHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhH
Q psy6461 166 RRYLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGG 243 (703)
Q Consensus 166 ~~~l~~~p~~~--~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (703)
+.+.+..|+.. ..++..+.+.|++.++...++ .|
T Consensus 85 ~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------------------------~p--------------- 120 (449)
T 1b89_A 85 QMARKKARESYVETELIFALAKTNRLAELEEFIN-----------------------------GP--------------- 120 (449)
T ss_dssp ------------------------CHHHHTTTTT-----------------------------CC---------------
T ss_pred HHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----------------------------CC---------------
Confidence 88877543321 134556677788877654432 11
Q ss_pred hhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHH
Q psy6461 244 LRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIE 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 323 (703)
....|..+|+.+...|++++|+..|.++ ..+..+-..+
T Consensus 121 -------n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L---------------------------- 158 (449)
T 1b89_A 121 -------NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTL---------------------------- 158 (449)
T ss_dssp -----------------------CTTTHHHHHHHT-------TCHHHHHHHH----------------------------
T ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHH----------------------------
Confidence 1247999999999999999999999975 1221111000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH
Q psy6461 324 LELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE 403 (703)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 403 (703)
...|++++|++.|+++. .+.+|...+..+.
T Consensus 159 ---------------------------------------~~Lg~yq~AVea~~KA~-----------~~~~Wk~v~~aCv 188 (449)
T 1b89_A 159 ---------------------------------------VHLGEYQAAVDGARKAN-----------STRTWKEVCFACV 188 (449)
T ss_dssp ---------------------------------------HTTTCHHHHHHHHHHHT-----------CHHHHHHHHHHHH
T ss_pred ---------------------------------------HHhccHHHHHHHHHHcC-----------CchhHHHHHHHHH
Confidence 01188999999999872 3668999999999
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHH
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL 483 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
..|+++.|....... ..+|. -...++.+|.+.|++++|+.++++++..++.. ..+
T Consensus 189 ~~~ef~lA~~~~l~L-~~~ad-------~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah-----------------~~~ 243 (449)
T 1b89_A 189 DGKEFRLAQMCGLHI-VVHAD-------ELEELINYYQDRGYFEELITMLEAALGLERAH-----------------MGM 243 (449)
T ss_dssp HTTCHHHHHHTTTTT-TTCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC-----------------HHH
T ss_pred HcCcHHHHHHHHHHH-HhCHh-------hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH-----------------HHH
Confidence 999999997766542 24442 23357888899999999999999999999875 678
Q ss_pred HHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC-----CcchHHHHHHH
Q psy6461 484 WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP-----PRYAKTLYLLY 558 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~ 558 (703)
|..++.++...+- +++.+..+.|...+.+.| .+ ..+|..+
T Consensus 244 ftel~il~~ky~p---------------------------------~k~~ehl~~~~~~ini~k~~~~~~~--~~~w~e~ 288 (449)
T 1b89_A 244 FTELAILYSKFKP---------------------------------QKMREHLELFWSRVNIPKVLRAAEQ--AHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCH---------------------------------HHHHHHHHHHSTTSCHHHHHHHHHT--TTCHHHH
T ss_pred HHHHHHHHHhcCH---------------------------------HHHHHHHHHHHHHhcCcHHHHHHHH--HHHHHHH
Confidence 8888777665421 123445555554444433 22 3589999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc------------cCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHH
Q psy6461 559 AKLEEEHGLARHAMAVYERATGA------------VLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQM 626 (703)
Q Consensus 559 a~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 626 (703)
..++...|+++.|....-..... .+.+ .+++...+.|+.+ ..+.+..-+..++...-|+..
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n--~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~~r--- 361 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN--VELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTR--- 361 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS--THHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCHHH---
T ss_pred HHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhH--HHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCcHH---
Confidence 99999999999988765544322 2222 4567777777764 556666666666633223222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 627 CLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
-..+..+.|.+.-+...++.+.. .++..+=+.+-++.-..++++..++.++
T Consensus 362 ---~v~~~~~~~~l~l~~~yl~~v~~----~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 362 ---AVNYFSKVKQLPLVKPYLRSVQN----HNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp ---HHHHHHHTTCTTTTHHHHHHHHT----TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHcCCcHHHHHHHHHHHH----hhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 23445678888777777754332 2367788888888888898888887776
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=8.9e-14 Score=144.99 Aligned_cols=219 Identities=12% Similarity=0.050 Sum_probs=153.1
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH-HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF-TQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLAR 330 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (703)
..++..+|.+|...|++++|...|++++...+...+. ...
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--------------------------------------- 183 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL--------------------------------------- 183 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH---------------------------------------
Confidence 3688999999999999999999999999875543321 000
Q ss_pred HHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCCh
Q psy6461 331 LEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408 (703)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 408 (703)
...+..++.+ ..|++++|+..|++++...+.....+....++..+|.++...|++
T Consensus 184 -----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 184 -----------------------LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 0011111111 128999999999999987432221223456899999999999999
Q ss_pred HHHHHHHHHhhcc-----C-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHH
Q psy6461 409 EDARLIFDKATLV-----P-YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIK 482 (703)
Q Consensus 409 ~~A~~~~~~al~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 482 (703)
++|+..|++++++ + |.. ..++..+|.++...|++++|...+++++...+...+ + ....
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~------~~~~ 304 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSL----PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD------V------IYLS 304 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------H------HHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC------H------HHHH
Confidence 9999999999984 3 333 488999999999999999999999999987542100 0 0011
Q ss_pred HHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 483 LWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLE 562 (703)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 562 (703)
.+..++.++...|+. ...++|...+++. ...|.. ..++..+|.++
T Consensus 305 ~~~~l~~~~~~~~~~--------------------------------~~~~~al~~~~~~-~~~~~~--~~~~~~la~~y 349 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDE--------------------------------EAIQGFFDFLESK-MLYADL--EDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHHHTSSCCH--------------------------------HHHHHHHHHHHHT-TCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcH--------------------------------HHHHHHHHHHHHC-cCHHHH--HHHHHHHHHHH
Confidence 133344444444431 0036777777775 222222 46888999999
Q ss_pred HHcCChHHHHHHHHHHhhccC
Q psy6461 563 EEHGLARHAMAVYERATGAVL 583 (703)
Q Consensus 563 ~~~g~~~~A~~~~~~al~~~p 583 (703)
...|++++|...|++++....
T Consensus 350 ~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=3.2e-13 Score=124.30 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCC
Q psy6461 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKW 509 (703)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~ 509 (703)
...+..++..+...|++++|+..+++++...|.+ ...+..++.++...|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~------------ 58 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-----------------VDVALHLGIAYVKTGAV------------ 58 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-----------------HHHHHHHHHHHHHTTCH------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-----------------hHHHHHHHHHHHHcCCH------------
Confidence 4778889999999999999999999999999874 67888888877776665
Q ss_pred CchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHH
Q psy6461 510 PYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFE 589 (703)
Q Consensus 510 ~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 589 (703)
++|...++++++..|.+ ..++..++.++...|++++|...+++++...|.+ ..
T Consensus 59 -----------------------~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~ 111 (186)
T 3as5_A 59 -----------------------DRGTELLERSLADAPDN--VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN--FN 111 (186)
T ss_dssp -----------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred -----------------------HHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh--HH
Confidence 99999999999999988 6799999999999999999999999999999987 45
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 590 MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
++...+..+...|++++|...++++++..|+++. ++..++.++...|++++|...++++++..|.
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK--VHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 6667777777889999999999999999998765 8999999999999999999999999988544
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.55 E-value=2.5e-12 Score=133.44 Aligned_cols=325 Identities=11% Similarity=0.019 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccc----cHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHR----VWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 182 (703)
.++...+.++...|++++|...+++++...|.. .+. ++...+.++...|+++.|+..+++++...|....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 88 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPG-WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV----- 88 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----
Confidence 445566777778899999999999999887742 111 3344455666677777777777777665432210
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (703)
+. .....+..+|.++
T Consensus 89 ---------------------------------------------~~--------------------~~~~~~~~la~~~ 103 (373)
T 1hz4_A 89 ---------------------------------------------WH--------------------YALWSLIQQSEIL 103 (373)
T ss_dssp ---------------------------------------------HH--------------------HHHHHHHHHHHHH
T ss_pred ---------------------------------------------HH--------------------HHHHHHHHHHHHH
Confidence 00 0123567889999
Q ss_pred HHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6461 263 IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL 342 (703)
Q Consensus 263 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (703)
...|++++|...|++++...+....
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~------------------------------------------------------- 128 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHL------------------------------------------------------- 128 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhcc-------------------------------------------------------
Confidence 9999999999999999875421100
Q ss_pred hhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q psy6461 343 NSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATL 420 (703)
Q Consensus 343 ~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 420 (703)
..+|.....+..++. ...|++++|...+++++...+... .+.....+..++.++...|++++|...+++++.
T Consensus 129 -----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 129 -----EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp -----TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----ccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000111111111111 123999999999999998754322 122456788899999999999999999999987
Q ss_pred cCC--CCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 421 VPY--TKVED-LATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 421 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
..+ ..+.. ........+.++...|++++|...+++++...|..... ....+..++.++...|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~la~~~~~~g~- 268 (373)
T 1hz4_A 203 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-------------LQGQWRNIARAQILLGE- 268 (373)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-------------GHHHHHHHHHHHHHTTC-
T ss_pred HHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh-------------hHHHHHHHHHHHHHcCC-
Confidence 632 22100 00111134455778999999999999999876542100 12234455555555554
Q ss_pred hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHH
Q psy6461 498 KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMA 573 (703)
Q Consensus 498 ~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~ 573 (703)
+++|...+++++...+... ...++..++.++...|++++|+.
T Consensus 269 ----------------------------------~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 314 (373)
T 1hz4_A 269 ----------------------------------FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 314 (373)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4889999998887644311 12478888999999999999999
Q ss_pred HHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 574 VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 574 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
.+++++...+.. ++..+....| +....++++++...|-
T Consensus 315 ~l~~al~~~~~~-------g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 315 VLLDALKLANRT-------GFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHH-------CCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhccc-------cHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 999999876642 1222222223 5677788888887774
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=1e-12 Score=136.64 Aligned_cols=239 Identities=12% Similarity=-0.027 Sum_probs=171.7
Q ss_pred hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHHH
Q psy6461 363 LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV---EDLATVWCEWAEL 439 (703)
Q Consensus 363 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~ 439 (703)
...|++++|+..|++++.........+....++..+|.++...|+++.|...+++++...+... .....++..+|.+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 3459999999999999876432222234567899999999999999999999999998754432 2345788899999
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHH
Q psy6461 440 ELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTY 519 (703)
Q Consensus 440 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y 519 (703)
+...|++++|...|.+++...+..... .....++..++.++...|++
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~lg~~y~~~~~~---------------------- 238 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQND-----------RFIAISLLNIANSYDRSGDD---------------------- 238 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHHTCH----------------------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHHCCCH----------------------
Confidence 999999999999999999764321000 00234566666666666554
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHH-----hCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc--h-HHHHH
Q psy6461 520 LTKFLSRYGGTKLERARDLFEQCLE-----ACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE--E-MFEMF 591 (703)
Q Consensus 520 ~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~-~~~~~ 591 (703)
++|...|+++++ ..|.. ..++..+|.++...|++++|...+++++...+.. . ....+
T Consensus 239 -------------~~A~~~~~~al~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 239 -------------QMAVEHFQKAAKVSREKVPDLL--PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp -------------HHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHhhCChhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999998 66665 5789999999999999999999999999886532 1 11222
Q ss_pred HHHHHHHHHhcC---chHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 592 NIYIKKAAEIYG---IPKTRQIYERAIESLPEEP-TRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 592 ~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..........++ +.+|...+++ ....+ ...++..+|.++...|++++|...|+++++.
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~----~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEK----KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 222223333344 5556655554 12221 2347778899999999999999999999876
No 81
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.54 E-value=3.1e-14 Score=126.45 Aligned_cols=133 Identities=12% Similarity=0.117 Sum_probs=115.6
Q ss_pred HHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy6461 37 YIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRF 115 (703)
Q Consensus 37 ~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 115 (703)
++.... .+++++|++.|++++...|+++..|..++..+... |++++|...|+++++.+|+++.+|..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~--------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA--------KEYDLAKKYICTYINVQERDPKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445555 78999999999999999999999999988887764 889999999999999999999999999999
Q ss_pred HHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH-HHHHHhhCCCCHHHH
Q psy6461 116 LMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV-FRRYLKLFPEDAEDY 179 (703)
Q Consensus 116 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~ 179 (703)
+...|++++|...|+++++.+| .++.+|..++.++...|+.++|... ++++++.+|++...+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHcCchHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 9999999999999999999999 4588899999999899988776665 589999999998754
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.53 E-value=2.9e-13 Score=127.60 Aligned_cols=170 Identities=9% Similarity=-0.006 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHH----------------HHHHHHHcCCHHHHHHHHH
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCE----------------WAELELRAGQEEAALRLMA 454 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~ 454 (703)
+.+.++..|..+...|++++|+..|+++++.+|.++ ..|+. ++.++.+.|++++|+..|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT----EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH----HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345677788888899999999999999999998876 67777 7888888888888888888
Q ss_pred HHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhH
Q psy6461 455 RATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLER 534 (703)
Q Consensus 455 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 534 (703)
++++.+|++ ...|..++.++...|++ ++
T Consensus 79 ~al~~~p~~-----------------~~~~~~lg~~~~~~g~~-----------------------------------~~ 106 (208)
T 3urz_A 79 ELLQKAPNN-----------------VDCLEACAEMQVCRGQE-----------------------------------KD 106 (208)
T ss_dssp HHHHHCTTC-----------------HHHHHHHHHHHHHHTCH-----------------------------------HH
T ss_pred HHHHHCCCC-----------------HHHHHHHHHHHHHcCCH-----------------------------------HH
Confidence 888888874 67777777777776664 78
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC--hHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHH
Q psy6461 535 ARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGL--ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612 (703)
Q Consensus 535 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (703)
|...|+++++.+|++ +.+|..+|.++...|. ...+...+.+++...|.. ..+..........|++++|+..|+
T Consensus 107 A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 107 ALRMYEKILQLEADN--LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ---YARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH---HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHccCHHHHHHHHH
Confidence 888888888888887 5678888777655543 344555666655433221 111112222233567777777777
Q ss_pred HHHHhCCCc
Q psy6461 613 RAIESLPEE 621 (703)
Q Consensus 613 ~al~~~p~~ 621 (703)
++++..|++
T Consensus 182 ~al~l~P~~ 190 (208)
T 3urz_A 182 KVILRFPST 190 (208)
T ss_dssp HHTTTSCCH
T ss_pred HHHHhCCCH
Confidence 777777764
No 83
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.52 E-value=1.1e-13 Score=126.82 Aligned_cols=138 Identities=10% Similarity=0.006 Sum_probs=103.4
Q ss_pred CCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC
Q psy6461 27 NPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM 105 (703)
Q Consensus 27 ~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 105 (703)
||...+.+...+.... .|++++|...|+++++.+|+++..|..++..+... |++++|...|++++...| +
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~--------g~~~~A~~~~~~a~~~~p-~ 72 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET--------KQFELAQELLATIPLEYQ-D 72 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT--------TCHHHHHHHHTTCCGGGC-C
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC--------CCHHHHHHHHHHhhhccC-C
Confidence 5666777778887776 88888888888888888888888888888877654 788888888888888888 7
Q ss_pred HHHHHHHHHHHH-hccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 106 PRIWLDYGRFLM-DQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 106 ~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
+..+...+.+.. ..+....|...|+++++..| .+..+|..++.++...|++++|+..|+++++.+|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 73 NSYKSLIAKLELHQQAAESPELKRLEQELAANP--DNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 776655554432 22344457888888888888 457778888888888888888888888888877764
No 84
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.52 E-value=5e-12 Score=124.92 Aligned_cols=235 Identities=9% Similarity=0.071 Sum_probs=193.2
Q ss_pred CchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC--ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH----
Q psy6461 367 KPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND--QLEDARLIFDKATLVPYTKVEDLATVWCEWAELE---- 440 (703)
Q Consensus 367 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---- 440 (703)
..++|+..+++++... | ....+|...+.++...| .+++++..+++++..+|++. .+|..-+.++
T Consensus 48 ~s~~aL~~t~~~L~~n-P-----~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y----~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 48 YSERALHITELGINEL-A-----SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY----QIWNYRQLIIGQIM 117 (306)
T ss_dssp CSHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-c-----HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH----HHHHHHHHHHHHHH
Confidence 3468999999999874 3 36789999999999888 99999999999999999998 9999988887
Q ss_pred HHc---CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHH
Q psy6461 441 LRA---GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWN 517 (703)
Q Consensus 441 ~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~ 517 (703)
... +++++++..++++++.+|++ ..+|.....+....|..
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pkn-----------------y~aW~~R~~vl~~l~~~-------------------- 160 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPKN-----------------HHVWSYRKWLVDTFDLH-------------------- 160 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCT--------------------
T ss_pred HhccccCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhccc--------------------
Confidence 555 78999999999999999985 88999988777776654
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC------hHHHHHHHHHHhhccCcchHHHHH
Q psy6461 518 TYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGL------ARHAMAVYERATGAVLPEEMFEMF 591 (703)
Q Consensus 518 ~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~ 591 (703)
...++.+.++++++.+|.+ ..+|..-+.+....|. +++++..+++++...|.+.+.+.+
T Consensus 161 -------------~~~~EL~~~~~~i~~d~~N--~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 161 -------------NDAKELSFVDKVIDTDLKN--NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp -------------TCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred -------------ChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 0138999999999999999 4599999999888887 899999999999999999665555
Q ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHhC---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHH
Q psy6461 592 NIYIKKAAEIYG-IPKTRQIYERAIESL---PEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWK 667 (703)
Q Consensus 592 ~~~~~~~~~~~~-~~~A~~~~~~al~~~---p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 667 (703)
...+. ...|. .+.+...+++++... |.++. ++..+++++.+.|+.++|...|+++.+..+|- ...+|...+
T Consensus 226 ~~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi-r~~yW~~~~ 300 (306)
T 3dra_A 226 LLGIH--ERFDRSITQLEEFSLQFVDLEKDQVTSSF--ALETLAKIYTQQKKYNESRTVYDLLKSKYNPI-RSNFWDYQI 300 (306)
T ss_dssp HHHHH--HHTTCCGGGGHHHHHTTEEGGGTEESCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG-GHHHHHHHH
T ss_pred HHHHH--HhcCCChHHHHHHHHHHHhccCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhccChH-HHHHHHHHH
Confidence 54443 33444 555677888888765 65555 78888999999999999999999998744565 588888654
Q ss_pred H
Q psy6461 668 S 668 (703)
Q Consensus 668 ~ 668 (703)
.
T Consensus 301 ~ 301 (306)
T 3dra_A 301 S 301 (306)
T ss_dssp H
T ss_pred h
Confidence 4
No 85
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=8.9e-14 Score=140.05 Aligned_cols=248 Identities=13% Similarity=0.043 Sum_probs=175.8
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC-----CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---
Q psy6461 389 GKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY-----TKVEDLATVWCEWAELELRAGQEEAALRLMARATATP--- 460 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 460 (703)
+....++..+|..+...|++++|+.+|+++++... .+ .....++..++.++...|++++|...+++++...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998511 11 1234789999999999999999999999998763
Q ss_pred --CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHH
Q psy6461 461 --ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDL 538 (703)
Q Consensus 461 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~ 538 (703)
+++ ......+..++.++...|++ ++|...
T Consensus 103 ~~~~~--------------~~~~~~~~~l~~~~~~~g~~-----------------------------------~~A~~~ 133 (311)
T 3nf1_A 103 LGKDH--------------PAVAATLNNLAVLYGKRGKY-----------------------------------KEAEPL 133 (311)
T ss_dssp HCTTC--------------HHHHHHHHHHHHHHHTTTCH-----------------------------------HHHHHH
T ss_pred hCCCC--------------hHHHHHHHHHHHHHHHcCcH-----------------------------------HHHHHH
Confidence 111 01255666666666665554 889999
Q ss_pred HHHHHHhC-----CCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc-----C-cchHHHHHHHHHHHHHHhcCchH
Q psy6461 539 FEQCLEAC-----PPR-YAKTLYLLYAKLEEEHGLARHAMAVYERATGAV-----L-PEEMFEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 539 ~~~al~~~-----p~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~~~~~~~~~~~~~~~~ 606 (703)
|+++++.. +++ ....++..+|.++...|++++|+..|++++... + .......+......+...|++++
T Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 213 (311)
T 3nf1_A 134 CKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQ 213 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 99998874 222 114689999999999999999999999999872 1 11234567777788888999999
Q ss_pred HHHHHHHHHHhCCC---------cchHHHHHH------HHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 607 TRQIYERAIESLPE---------EPTRQMCLK------FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 607 A~~~~~~al~~~p~---------~~~~~~~~~------~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
|...|+++++..|+ ... .|.. .+......+.+.+|...++++... .+. ...+|..++....
T Consensus 214 A~~~~~~al~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~la~~~~ 289 (311)
T 3nf1_A 214 AETLYKEILTRAHEREFGSVDDENKP--IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPT-VTTTLKNLGALYR 289 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC------CC--HHHHHHHHHHC-------CCSCCCC----------CHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchHH--HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-Cch-HHHHHHHHHHHHH
Confidence 99999999986432 211 3333 333334456677788888888776 333 5888999999999
Q ss_pred HcCCHHHHHHHHHHHHHHH
Q psy6461 672 THGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 672 ~~g~~~~~~~~~~~~~~~~ 690 (703)
..|+.++|.+.++.+-.+.
T Consensus 290 ~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 290 RQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHh
Confidence 9999999999997666554
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=7.4e-12 Score=129.85 Aligned_cols=295 Identities=9% Similarity=-0.008 Sum_probs=203.8
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLE 332 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (703)
.+....+.++...|++++|...+++++...|........ ......
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~l-------------------------------- 59 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI---VATSVL-------------------------------- 59 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHH---HHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHH---HHHHHH--------------------------------
Confidence 567778889999999999999999999876643211000 000000
Q ss_pred HHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHH
Q psy6461 333 DLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDAR 412 (703)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 412 (703)
..+....|++++|...+++++...+..........++..++.++...|++++|+
T Consensus 60 --------------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 113 (373)
T 1hz4_A 60 --------------------------GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 113 (373)
T ss_dssp --------------------------HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 001111288899999999998763321111112345677899999999999999
Q ss_pred HHHHHhhccCCCCc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHH
Q psy6461 413 LIFDKATLVPYTKV----EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYA 488 (703)
Q Consensus 413 ~~~~~al~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (703)
..|++++...+... ......+..++.++...|++++|...+++++...+..... .....+..++
T Consensus 114 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~~la 181 (373)
T 1hz4_A 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ------------QQLQCLAMLI 181 (373)
T ss_dssp HHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG------------GGHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH------------HHHHHHHHHH
Confidence 99999988742110 1223667888999999999999999999999887753100 0134555666
Q ss_pred HHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHH-----HHHHHHH
Q psy6461 489 DLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYL-----LYAKLEE 563 (703)
Q Consensus 489 ~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~a~~~~ 563 (703)
.++...|++ ++|+..+++++...+.......|. ..+.++.
T Consensus 182 ~~~~~~g~~-----------------------------------~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 182 QCSLARGDL-----------------------------------DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp HHHHHHTCH-----------------------------------HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCH-----------------------------------HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 666666554 999999999988743211011222 3445577
Q ss_pred HcCChHHHHHHHHHHhhccCcch--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHc
Q psy6461 564 EHGLARHAMAVYERATGAVLPEE--MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP----TRQMCLKFAEMETKL 637 (703)
Q Consensus 564 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~ 637 (703)
..|++++|...+++++...|.+. ....+......+...|++++|...+++++...+... ...++..++.++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 89999999999999998776431 122445566677778999999999999988754321 123677788899999
Q ss_pred CCHHHHHHHHHHHhcccC
Q psy6461 638 GEIDRARAIYAHCSQICD 655 (703)
Q Consensus 638 g~~~~A~~~~~~a~~~~~ 655 (703)
|+.++|+..|++++...+
T Consensus 307 g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 307 GRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999988754
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.51 E-value=4.3e-14 Score=125.49 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=80.5
Q ss_pred HHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHH
Q psy6461 398 FGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARV 477 (703)
Q Consensus 398 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 477 (703)
+|.++...|++++|+..|++++..+|.++ ..++.+|.++.+.|++++|+..|+++++.+|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~----~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------------- 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKS----IKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------------- 64 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHH----TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------
Confidence 34455556666677777777666655544 556666666666777777777777777666663
Q ss_pred HhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHH
Q psy6461 478 YKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLL 557 (703)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 557 (703)
+..|..++.++...|++ ++|...|+++++.+|++ +.+|..
T Consensus 65 ---~~a~~~lg~~~~~~~~~-----------------------------------~~A~~~~~~al~~~p~~--~~~~~~ 104 (150)
T 4ga2_A 65 ---PKAHRFLGLLYELEENT-----------------------------------DKAVECYRRSVELNPTQ--KDLVLK 104 (150)
T ss_dssp ---HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred ---HHHHHHHHHHHHHcCch-----------------------------------HHHHHHHHHHHHhCCCC--HHHHHH
Confidence 56666666666655554 66666677777766666 456666
Q ss_pred HHHHHHHcCChHHHHHH-HHHHhhccCcc
Q psy6461 558 YAKLEEEHGLARHAMAV-YERATGAVLPE 585 (703)
Q Consensus 558 ~a~~~~~~g~~~~A~~~-~~~al~~~p~~ 585 (703)
+|.++...|++++|... ++++++..|++
T Consensus 105 la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 105 IAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 66666666666554443 35666666655
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.50 E-value=2.3e-13 Score=152.32 Aligned_cols=174 Identities=14% Similarity=-0.042 Sum_probs=111.0
Q ss_pred HHcCChHHHHHHHHHhh--------ccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 403 EVNDQLEDARLIFDKAT--------LVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 403 ~~~~~~~~A~~~~~~al--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
...|++++|+..|++++ +.+|.+. .+|+.++..+.+.|++++|+..|+++++.+|++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----------- 466 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESV----ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR----------- 466 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCS----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC-----------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccch----hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch-----------
Confidence 45666777777777776 6666665 666677777777777777777777777766663
Q ss_pred HHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHH
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTL 554 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 554 (703)
...|+.++.++...|++ ++|...|+++++.+|++ ...
T Consensus 467 ------~~a~~~lg~~~~~~g~~-----------------------------------~~A~~~~~~al~l~P~~--~~~ 503 (681)
T 2pzi_A 467 ------WRLVWYRAVAELLTGDY-----------------------------------DSATKHFTEVLDTFPGE--LAP 503 (681)
T ss_dssp ------HHHHHHHHHHHHHHTCH-----------------------------------HHHHHHHHHHHHHSTTC--SHH
T ss_pred ------HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCCCC--hHH
Confidence 56666666666655554 66777777777777766 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 555 YLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEME 634 (703)
Q Consensus 555 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 634 (703)
|..+|.++...|++++ +..|+++++.+|++. ..|......+...|++++|...|+++++..|++.. .+...+.++
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--a~~~~~~~~ 578 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVWSTNDGVI--SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTT--ARLTSAVTL 578 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhCCchH--HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHH--HHHHHHHHH
Confidence 6677777767777776 677777777766653 34555555555666777777777777777666544 566666655
Q ss_pred HHcCC
Q psy6461 635 TKLGE 639 (703)
Q Consensus 635 ~~~g~ 639 (703)
...|+
T Consensus 579 ~~~~~ 583 (681)
T 2pzi_A 579 LSGRS 583 (681)
T ss_dssp C----
T ss_pred HccCC
Confidence 44443
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.50 E-value=3e-13 Score=151.44 Aligned_cols=175 Identities=11% Similarity=-0.018 Sum_probs=155.7
Q ss_pred hcCCCcHHHHHHHHhhhcCCchhHHHHHHHHH--------HhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q psy6461 348 RQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAV--------KTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKAT 419 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~--------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 419 (703)
..+|.++.+++..+ +..|++++|++.|++++ .. . +....+|+.+|..+...|++++|+..|++++
T Consensus 388 ~~~p~~~~a~~~~a-~~~~~~~~A~~~~~~al~~~~~~~~~~-~-----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 460 (681)
T 2pzi_A 388 LVDPTDVAASVLQA-TVLSQPVQTLDSLRAARHGALDADGVD-F-----SESVELPLMEVRALLDLGDVAKATRKLDDLA 460 (681)
T ss_dssp CCCTTSTTHHHHHH-TTTCCHHHHHHHHHHHHTC-------C-C-----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc-ccccCHHHHHHHHHHhhhhcccccccc-c-----ccchhHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 45788887777665 44599999999999998 33 2 2467899999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhH
Q psy6461 420 LVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKA 499 (703)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (703)
+.+|.+. .+|+.+|.++...|++++|+..|+++++.+|++ ...|..++.++...|++
T Consensus 461 ~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----------------~~~~~~lg~~~~~~g~~-- 517 (681)
T 2pzi_A 461 ERVGWRW----RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-----------------LAPKLALAATAELAGNT-- 517 (681)
T ss_dssp HHHCCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-----------------SHHHHHHHHHHHHHTCC--
T ss_pred ccCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------hHHHHHHHHHHHHcCCh--
Confidence 9999997 999999999999999999999999999999985 78888888888887775
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q psy6461 500 YEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERAT 579 (703)
Q Consensus 500 ~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 579 (703)
++ ...|+++++.+|++ ..+|..+|.++...|++++|+..|++++
T Consensus 518 ---------------------------------~~-~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 518 ---------------------------------DE-HKFYQTVWSTNDGV--ISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp ---------------------------------CT-TCHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ---------------------------------HH-HHHHHHHHHhCCch--HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 88 99999999999999 6799999999999999999999999999
Q ss_pred hccCcchHH
Q psy6461 580 GAVLPEEMF 588 (703)
Q Consensus 580 ~~~p~~~~~ 588 (703)
+..|.+...
T Consensus 562 ~l~P~~~~a 570 (681)
T 2pzi_A 562 PTSRHFTTA 570 (681)
T ss_dssp TTSTTHHHH
T ss_pred ccCcccHHH
Confidence 999987443
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=1.2e-13 Score=136.78 Aligned_cols=234 Identities=13% Similarity=0.081 Sum_probs=165.1
Q ss_pred CCchhHHHHHHHHHHhcCCCc--cCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-----CCCcchHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKL--AVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP-----YTKVEDLATVWCEWAE 438 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~~ 438 (703)
|+++.|+..|++++....... ..+....++..+|.++...|++++|+..|++++... +.++ ....++..++.
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~ 93 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP-AVAATLNNLAV 93 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHH
Confidence 888999999999988632111 113467889999999999999999999999999873 2222 33478999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcCC-----CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchH
Q psy6461 439 LELRAGQEEAALRLMARATATP-----ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIF 513 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~ 513 (703)
++...|++++|...|.+++... +++ +.....+..++.++...|++
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~---------------- 143 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFH--------------PDVAKQLNNLALLCQNQGKA---------------- 143 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHHTTTCH----------------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCC--------------hHHHHHHHHHHHHHHHcCCH----------------
Confidence 9999999999999999999763 211 01255666666666666554
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 514 DIWNTYLTKFLSRYGGTKLERARDLFEQCLEA--------CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 514 ~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
++|...|+++++. .|.. ..++..+|.++...|++++|...|+++++..+..
T Consensus 144 -------------------~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 144 -------------------EEVEYYYRRALEIYATRLGPDDPNV--AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHSCTTCHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 4444 5689999999999999999999999999874321
Q ss_pred h-------HHHHHHHHHHHHHHhcC------chHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 586 E-------MFEMFNIYIKKAAEIYG------IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQ 652 (703)
Q Consensus 586 ~-------~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~ 652 (703)
. ...+|..........+. +..+...++......|+ ....+..++.++...|++++|...|++|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT--VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 11233333333322222 22222223222222233 234788899999999999999999999987
Q ss_pred c
Q psy6461 653 I 653 (703)
Q Consensus 653 ~ 653 (703)
+
T Consensus 281 ~ 281 (283)
T 3edt_B 281 N 281 (283)
T ss_dssp T
T ss_pred h
Confidence 6
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.48 E-value=6.7e-13 Score=125.14 Aligned_cols=169 Identities=11% Similarity=0.062 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHH----------------HHHHHHhc
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSL----------------YADLEESF 494 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 494 (703)
..++..+..++..|++++|+..|++++..+|++ +..|.. ++.++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~- 66 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-----------------TEMYYWTNVDKNSEISSKLATELALAYKK- 66 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-----------------HHHHHHHHSCTTSHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------hHHHHHhhhcchhhhhHHHHHHHHHHHHH-
Confidence 567788888899999999999999999999974 555555 3333333
Q ss_pred CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHH
Q psy6461 495 GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAV 574 (703)
Q Consensus 495 ~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~ 574 (703)
.|++++|...|+++++.+|++ +.+|..+|.++...|++++|+..
T Consensus 67 ----------------------------------~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~ 110 (208)
T 3urz_A 67 ----------------------------------NRNYDKAYLFYKELLQKAPNN--VDCLEACAEMQVCRGQEKDALRM 110 (208)
T ss_dssp ----------------------------------TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ----------------------------------CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 455699999999999999999 67999999999999999999999
Q ss_pred HHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 575 YERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 575 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
|+++++..|++.......+.+.+....+....+...|.+++...|. ...+...+......|++++|+..|++|+++.
T Consensus 111 ~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 111 YEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM---QYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH---HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999865544444444443344556677777777643332 2245666777778999999999999999995
Q ss_pred CC
Q psy6461 655 DP 656 (703)
Q Consensus 655 ~~ 656 (703)
|.
T Consensus 188 P~ 189 (208)
T 3urz_A 188 PS 189 (208)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=6.2e-13 Score=121.68 Aligned_cols=166 Identities=16% Similarity=0.008 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
+.++..|..+...|++++|+..|+++++.+|+++ .+|..++.++.+.|++++|+..|++++...| +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--------- 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLATIPLEYQ-D--------- 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C---------
Confidence 3578889999999999999999999999999998 9999999999999999999999999999988 5
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchH
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAK 552 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 552 (703)
+..+...+.+.... . +...+|...|+++++.+|++ +
T Consensus 73 --------~~~~~~~~~~~~~~-------------------------------~---~~~~~a~~~~~~al~~~P~~--~ 108 (176)
T 2r5s_A 73 --------NSYKSLIAKLELHQ-------------------------------Q---AAESPELKRLEQELAANPDN--F 108 (176)
T ss_dssp --------HHHHHHHHHHHHHH-------------------------------H---HTSCHHHHHHHHHHHHSTTC--H
T ss_pred --------hHHHHHHHHHHHHh-------------------------------h---cccchHHHHHHHHHHhCCCC--H
Confidence 33333322221110 0 01145899999999999998 6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIE 616 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 616 (703)
.++..+|.++...|++++|+..|+++++..|.......+...+..+...|+.++|...|+++|.
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 7999999999999999999999999999988653333555555566666677777777766664
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.48 E-value=2.8e-12 Score=122.51 Aligned_cols=190 Identities=10% Similarity=0.039 Sum_probs=132.5
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY---KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM 105 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 105 (703)
+...+...+.... .|++++|...|+++++.+|.++ ..|..++...... |++++|...|+++++..|++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN--------ADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHCcCC
Confidence 4567777777666 8999999999999999999874 6777777766554 88999999999999999988
Q ss_pred HH---HHHHHHHHHHh------------------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 106 PR---IWLDYGRFLMD------------------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 106 ~~---~~~~~~~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
+. ++...+.++.. .|++++|...|+++++..|.+ ..++.....+....+....
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~--~~a~~a~~~l~~~~~~~~~---- 148 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS--QYTTDATKRLVFLKDRLAK---- 148 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTC--TTHHHHHHHHHHHHHHHHH----
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC--hhHHHHHHHHHHHHHHHHH----
Confidence 75 67777776654 467778888888888877743 4444332222111000000
Q ss_pred HHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHh
Q psy6461 165 FRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244 (703)
Q Consensus 165 ~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (703)
.......++...|++++|+..|++++.. +|+..
T Consensus 149 ----------~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------------~p~~~------------- 181 (225)
T 2yhc_A 149 ----------YEYSVAEYYTERGAWVAVVNRVEGMLRD------------------------YPDTQ------------- 181 (225)
T ss_dssp ----------HHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------STTSH-------------
T ss_pred ----------HHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------------CcCCC-------------
Confidence 0011234566788888888888777631 22210
Q ss_pred hhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCc
Q psy6461 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTV 285 (703)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 285 (703)
...+++..+|..+.+.|++++|+..++++....|+.
T Consensus 182 -----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 182 -----ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 113679999999999999999999999988887764
No 94
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=2.6e-11 Score=125.90 Aligned_cols=247 Identities=13% Similarity=0.047 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHH
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLED 333 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (703)
.++..|..+...|++++|...|++++...+...+-..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------------------- 139 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE------------------------------------------- 139 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-------------------------------------------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH-------------------------------------------
Confidence 5677899999999999999999999986543222100
Q ss_pred HHhhhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCcc-CCchhHHHHHHHHHHHHcCChHH
Q psy6461 334 LMERRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKLA-VGKLHTLWIEFGKFYEVNDQLED 410 (703)
Q Consensus 334 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~ 410 (703)
....+..++.+ ..|+++.|+..+++++...+.... ......++..+|.++...|++++
T Consensus 140 -------------------~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 200 (378)
T 3q15_A 140 -------------------KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200 (378)
T ss_dssp -------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHH
Confidence 00111111111 128889999999999887433221 12346788899999999999999
Q ss_pred HHHHHHHhhccCC--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----CCCCCcccccchhhHHHHHHhhHHH
Q psy6461 411 ARLIFDKATLVPY--TKVEDLATVWCEWAELELRAGQEEAALRLMARATA-----TPARPVAYHDEAETVQARVYKSIKL 483 (703)
Q Consensus 411 A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
|...|++++...+ .+......++..+|.++...|++++|+..|++++. .+|. ....
T Consensus 201 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~~~ 263 (378)
T 3q15_A 201 ALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-----------------LPKV 263 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-----------------HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-----------------HHHH
Confidence 9999999998743 22223356889999999999999999999999998 5554 2566
Q ss_pred HHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc---hHHHHHHHHH
Q psy6461 484 WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY---AKTLYLLYAK 560 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~a~ 560 (703)
+..++.++...|+. ++|...++++++..+... ....+..++.
T Consensus 264 ~~~la~~~~~~g~~-----------------------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 308 (378)
T 3q15_A 264 LFGLSWTLCKAGQT-----------------------------------QKAFQFIEEGLDHITARSHKFYKELFLFLQA 308 (378)
T ss_dssp HHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH-----------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777766664 899999999999855321 1234556666
Q ss_pred HHHHcCC---hHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh
Q psy6461 561 LEEEHGL---ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES 617 (703)
Q Consensus 561 ~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (703)
++...|+ +.+|+..+++. ...| ....++...+..+...|++++|...|+++++.
T Consensus 309 ly~~~~~~~~~~~al~~~~~~-~~~~--~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 309 VYKETVDERKIHDLLSYFEKK-NLHA--YIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHSSSCCHHHHHHHHHHHHHT-TCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHhC-CChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6667777 77777777762 1122 22345556677777889999999999999875
No 95
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.47 E-value=1e-12 Score=133.82 Aligned_cols=390 Identities=10% Similarity=0.080 Sum_probs=171.6
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.|++++|...+++. +.+.+|..+++..... |++++|...|.++ +++..|...+..+...|++
T Consensus 16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~--------g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQK--------GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC-----CChHHHHHHHHHHHHc--------CCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCH
Confidence 57788888888888 2345888887766543 7788888888764 4666788888888888888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH---HHHHHhcCCHHHHHHHHHHh
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY---IEYLSSIERLDEAAVKLAYI 199 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~~~~~~A~~~~~~~ 199 (703)
++|++.++.+++..| .+.+...++..+.+.|++.++.++++. |+.. .| ...+...|.+++|+..|..+
T Consensus 78 EeAi~yl~~ark~~~---~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~-a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKKAR---ESYVETELIFALAKTNRLAELEEFING-----PNNA-HIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHhCc---cchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 888888888887544 245566677777778888877777642 4332 33 34456788888888888755
Q ss_pred hcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHH
Q psy6461 200 VNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAI 279 (703)
Q Consensus 200 ~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 279 (703)
..|..+|+.+.+.|+++.|.+.|+++.
T Consensus 149 -----------------------------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 149 -----------------------------------------------------SNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -----------------------------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred -----------------------------------------------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 258888888889999999999888872
Q ss_pred hhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHH
Q psy6461 280 QTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHK 359 (703)
Q Consensus 280 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~ 359 (703)
.+ ..|...... +.
T Consensus 176 --~~------~~Wk~v~~a-------------------------------Cv---------------------------- 188 (449)
T 1b89_A 176 --ST------RTWKEVCFA-------------------------------CV---------------------------- 188 (449)
T ss_dssp --CH------HHHHHHHHH-------------------------------HH----------------------------
T ss_pred --Cc------hhHHHHHHH-------------------------------HH----------------------------
Confidence 11 122211100 00
Q ss_pred HHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHH
Q psy6461 360 RVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAEL 439 (703)
Q Consensus 360 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 439 (703)
..|+++.|..+... +. ..++-...++.+|.+.|.+++|+.+++.++..++.+. .+|..++-+
T Consensus 189 ----~~~ef~lA~~~~l~-L~---------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~----~~ftel~il 250 (449)
T 1b89_A 189 ----DGKEFRLAQMCGLH-IV---------VHADELEELINYYQDRGYFEELITMLEAALGLERAHM----GMFTELAIL 250 (449)
T ss_dssp ----HTTCHHHHHHTTTT-TT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH----HHHHHHHHH
T ss_pred ----HcCcHHHHHHHHHH-HH---------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH----HHHHHHHHH
Confidence 01555555443332 11 1222344577889999999999999999999998887 889999888
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHH
Q psy6461 440 ELRA--GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWN 517 (703)
Q Consensus 440 ~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~ 517 (703)
+.+. ++..+.++.|...+.++|- -|.-....+|..++-++...+++ +.|+..+
T Consensus 251 ~~ky~p~k~~ehl~~~~~~ini~k~------------~~~~~~~~~w~e~~~ly~~~~e~---d~A~~tm---------- 305 (449)
T 1b89_A 251 YSKFKPQKMREHLELFWSRVNIPKV------------LRAAEQAHLWAELVFLYDKYEEY---DNAIITM---------- 305 (449)
T ss_dssp HHTTCHHHHHHHHHHHSTTSCHHHH------------HHHHHTTTCHHHHHHHHHHTTCH---HHHHHHH----------
T ss_pred HHhcCHHHHHHHHHHHHHHhcCcHH------------HHHHHHHHHHHHHHHHHHhhchH---HHHHHHH----------
Confidence 8664 4566666676665555540 00001257888888888887775 4444322
Q ss_pred HHHHHHHHHhCCCChhH--HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHH
Q psy6461 518 TYLTKFLSRYGGTKLER--ARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYI 595 (703)
Q Consensus 518 ~y~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 595 (703)
.. .++. --..|...+....+ .+++...+.++.. ....+..-+..++...-++++ -+
T Consensus 306 ------~~-----h~~~a~~~~~f~~~~~kv~n---~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~~r------~v 363 (449)
T 1b89_A 306 ------MN-----HPTDAWKEGQFKDIITKVAN---VELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTR------AV 363 (449)
T ss_dssp ------HH-----STTTTCCHHHHHHHHHHCSS---THHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCHHH------HH
T ss_pred ------Hh-----CChhhhhhHHHHHHHhchhH---HHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCcHH------HH
Confidence 00 0011 12455555554443 4688888888773 333445555555533333322 13
Q ss_pred HHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 596 KKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYA 648 (703)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 648 (703)
.+..+.++++-++..++.+-.. ++.. +-..+-.++....+++.-|...+
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~--n~~~--vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNH--NNKS--VNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTT--CCHH--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHh--hHHH--HHHHHHHHHHhhhhHHHHHHHHH
Confidence 3445567777777777544432 2222 66677777888888776665544
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.47 E-value=1.6e-12 Score=129.32 Aligned_cols=170 Identities=9% Similarity=-0.042 Sum_probs=95.3
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
|.+.+.+...+.... .|++++|...|+++++.+|++...|..++..+... |++++|...|++++...|++.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~--------g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIAL--------NRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHTTSCGGGCSHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC--------CCHHHHHHHHHhCchhhcchH
Confidence 555555555554444 55555555555555555555555555555544432 455555555555555555433
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhc
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSI 186 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 186 (703)
..+...+..+...++.+.|...|++++...| .+..++..++..+...|++++|+..|+++++.+|++.
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~---------- 253 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA---------- 253 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG----------
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----------
Confidence 3333333334444455555555555555555 2344555555555555555555555555555554431
Q ss_pred CCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC
Q psy6461 187 ERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG 266 (703)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (703)
...++..++.++...|
T Consensus 254 ----------------------------------------------------------------~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 254 ----------------------------------------------------------------DGQTRXTFQEILAALG 269 (287)
T ss_dssp ----------------------------------------------------------------GGHHHHHHHHHHHHHC
T ss_pred ----------------------------------------------------------------cchHHHHHHHHHHHcC
Confidence 1357888888888899
Q ss_pred chHHHHHHHHHHHhh
Q psy6461 267 LFERARDIYEEAIQT 281 (703)
Q Consensus 267 ~~~~A~~~~~~~l~~ 281 (703)
+.++|...|++++..
T Consensus 270 ~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 270 TGDALASXYRRQLYA 284 (287)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 999999999887753
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.46 E-value=8.5e-13 Score=130.62 Aligned_cols=164 Identities=15% Similarity=0.285 Sum_probs=127.0
Q ss_pred cCchhHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhc--------CCCH
Q psy6461 43 NAPKAIINTIYERSLKE--------LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFM--------HKMP 106 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~--------~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~ 106 (703)
.|++++|...|+++++. .|.....|..++..+... |++++|...|++++... |...
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ--------NKYKEAAHLLNDALAIREKTLGKDHPAVA 85 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 57888888888888884 366778888888776654 89999999999999884 5667
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhC-----Cc-ccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRAL-----PI-TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
.+|..++.++...|++++|...|++++... |. .....++..++.++...|++++|+..|+++++...
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------- 158 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA------- 158 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------
Confidence 899999999999999999999999999972 11 13466777788888888888888888888776410
Q ss_pred HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHH
Q psy6461 181 EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLAD 260 (703)
Q Consensus 181 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (703)
... ++ ..| ....++..+|.
T Consensus 159 -----------------~~~---------~~--------------~~~---------------------~~~~~~~~la~ 177 (283)
T 3edt_B 159 -----------------TRL---------GP--------------DDP---------------------NVAKTKNNLAS 177 (283)
T ss_dssp -----------------HHS---------CT--------------TCH---------------------HHHHHHHHHHH
T ss_pred -----------------Hhc---------CC--------------CCH---------------------HHHHHHHHHHH
Confidence 000 00 000 12357889999
Q ss_pred HHHHhCchHHHHHHHHHHHhhc
Q psy6461 261 YYIRSGLFERARDIYEEAIQTV 282 (703)
Q Consensus 261 ~~~~~~~~~~A~~~~~~~l~~~ 282 (703)
++...|++++|...|++++...
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998753
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.46 E-value=7.7e-13 Score=113.28 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=92.8
Q ss_pred HHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHH
Q psy6461 22 EEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV 100 (703)
Q Consensus 22 ~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 100 (703)
++...||...+.|...+..+. .|++++|...|+++++.+|.++.+|..++..+... |++++|...|+++++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL--------MEFQRALDDCDTCIR 75 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh--------ccHHHHHHHHHHHHH
Confidence 344568888888888887776 88888888888888888888888888887776654 778888888888888
Q ss_pred hcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHH
Q psy6461 101 FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSF 151 (703)
Q Consensus 101 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 151 (703)
.+|+++.+|..+|.++...|++++|...|+++++.+|. +..++..+..+
T Consensus 76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~~~a~~~l~~~ 124 (126)
T 4gco_A 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS--NEEAREGVRNC 124 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC--CHHHHHHHHHh
Confidence 88888888888888888888888888888888888884 45665555443
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=3.2e-13 Score=119.19 Aligned_cols=111 Identities=3% Similarity=-0.044 Sum_probs=58.4
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.|++++..+|.+.+.|..++..+. .|++++|...|+++++.+|.++..|..++..+... |++++|...|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~--------g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--------EQFQQAADLYAV 95 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHH
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------ccHHHHHHHHHH
Confidence 344445555555555555554444 55555555555555555555555555555444332 455555555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
+++.+|+++.+|..+|.++...|++++|...|+++++..|
T Consensus 96 al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5555555555555555555555555555555555555555
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.45 E-value=9e-12 Score=124.26 Aligned_cols=260 Identities=10% Similarity=0.042 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHH
Q psy6461 47 AIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTR 126 (703)
Q Consensus 47 ~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~ 126 (703)
.+|.+++.+|-+..+.+...| .+... + ..+++++|...|+++ +.++...|++++|.
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~-~~~~~-------~--~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~ 57 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFM-KLFSG-------S--DSYKFEEAADLCVQA--------------ATIYRLRKELNLAG 57 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHH-HHHSC-------C--SHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHH
T ss_pred CcHHHHHHHHHHHhCcCCCcc-hhcCC-------C--CCccHHHHHHHHHHH--------------HHHHHHcCCHHHHH
Confidence 457788888888888776666 44210 0 013588999999988 45677789999999
Q ss_pred HHHHHHHHhCCcc----cccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q psy6461 127 HVFDRALRALPIT----QHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNK 202 (703)
Q Consensus 127 ~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 202 (703)
..|++++...+.. .....|..++.++...|++++|+..|++++...|.. |+..
T Consensus 58 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-----------g~~~------------ 114 (292)
T 1qqe_A 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-----------GQFR------------ 114 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHH------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-----------CCHH------------
Confidence 9999999875421 124567777888888888888888888887654332 1110
Q ss_pred cccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHh-CchHHHHHHHHHHHhh
Q psy6461 203 ESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRS-GLFERARDIYEEAIQT 281 (703)
Q Consensus 203 ~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~l~~ 281 (703)
....++..+|.+|... |++++|+..|++++..
T Consensus 115 -----------------------------------------------~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 115 -----------------------------------------------RGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 0124688889999996 9999999999999987
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHH
Q psy6461 282 VTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRV 361 (703)
Q Consensus 282 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~ 361 (703)
.|...+..... ..+..++
T Consensus 148 ~~~~~~~~~~~--------------------------------------------------------------~~~~~lg 165 (292)
T 1qqe_A 148 YAQDQSVALSN--------------------------------------------------------------KCFIKCA 165 (292)
T ss_dssp HHHTTCHHHHH--------------------------------------------------------------HHHHHHH
T ss_pred HHhCCChHHHH--------------------------------------------------------------HHHHHHH
Confidence 65322110000 0011111
Q ss_pred hh--hcCCchhHHHHHHHHHHhcCCCccC-CchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH-HHHHHHHH
Q psy6461 362 RL--FDGKPLDIIRTYTEAVKTVDPKLAV-GKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL-ATVWCEWA 437 (703)
Q Consensus 362 ~~--~~~~~~~a~~~~~~a~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~ 437 (703)
.+ ..|++++|+..|++++...+..... .....++..+|.++...|++++|+..|+++++++|...... ...+..++
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 11 1288999999999999874322111 12234788999999999999999999999999988765211 12344455
Q ss_pred HHHH--HcCCHHHHHHHHHHHhcCCCC
Q psy6461 438 ELEL--RAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 438 ~~~~--~~~~~~~A~~~~~~a~~~~p~ 462 (703)
..+. ..+++++|+..|++++..+|.
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 5443 356799999999999999886
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.45 E-value=3e-12 Score=127.29 Aligned_cols=169 Identities=11% Similarity=-0.054 Sum_probs=136.8
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
...+.++..|..+...|++++|+..|++++..+|.++ .++..++.++.+.|++++|+..+++++...|+.
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------ 184 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------ 184 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------
Confidence 3567889999999999999999999999999999998 899999999999999999999999999999862
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
...+......+...+ +.++|...|++++..+|++
T Consensus 185 -----------~~~~~~~~~~l~~~~-----------------------------------~~~~a~~~l~~al~~~P~~ 218 (287)
T 3qou_A 185 -----------RYQGLVAQIELLXQA-----------------------------------ADTPEIQQLQQQVAENPED 218 (287)
T ss_dssp -----------HHHHHHHHHHHHHHH-----------------------------------TSCHHHHHHHHHHHHCTTC
T ss_pred -----------HHHHHHHHHHHHhhc-----------------------------------ccCccHHHHHHHHhcCCcc
Confidence 222222221122222 2378999999999999999
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIE 616 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 616 (703)
+.++..+|.++...|++++|+..|+++++..|++.....+...+..+...|+.+.|...|++++.
T Consensus 219 --~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 219 --AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 67999999999999999999999999999998764445566666666666777777777777664
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.44 E-value=2.6e-11 Score=119.75 Aligned_cols=222 Identities=10% Similarity=0.090 Sum_probs=183.9
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG--QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIK 482 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 482 (703)
....++|+..++++|.++|.+. .+|+.-+.++...| .+++++..+++++..+|++ ..
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~----taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-----------------y~ 104 (306)
T 3dra_A 46 EEYSERALHITELGINELASHY----TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-----------------YQ 104 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-----------------CH
T ss_pred CCCCHHHHHHHHHHHHHCcHHH----HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-----------------HH
Confidence 3444799999999999999997 99999999998888 9999999999999999995 78
Q ss_pred HHHHHHHHH----HhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 483 LWSLYADLE----ESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLY 558 (703)
Q Consensus 483 ~~~~~~~~~----~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 558 (703)
+|.....+. ...+. .++++++...++++++.+|.+ ..+|..-
T Consensus 105 aW~~R~~iL~~~~~~l~~--------------------------------~~~~~~EL~~~~~~l~~~pkn--y~aW~~R 150 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNN--------------------------------DFDPYREFDILEAMLSSDPKN--HHVWSYR 150 (306)
T ss_dssp HHHHHHHHHHHHHHHTTT--------------------------------CCCTHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--------------------------------cCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 998887776 32210 134689999999999999999 5799999
Q ss_pred HHHHHHcCChH--HHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC------chHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 559 AKLEEEHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG------IPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 559 a~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
+.+....|.++ +++..++++++.+|.+...+.+..++... .+. ++++.+.+.+++..+|++.. +|...
T Consensus 151 ~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~--l~~~~~~~~~~eEl~~~~~aI~~~p~n~S--aW~y~ 226 (306)
T 3dra_A 151 KWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS--KKHLATDNTIDEELNYVKDKIVKCPQNPS--TWNYL 226 (306)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS--SGGGCCHHHHHHHHHHHHHHHHHCSSCHH--HHHHH
T ss_pred HHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccccchhhhHHHHHHHHHHHHHhCCCCcc--HHHHH
Confidence 99999999998 99999999999999996655555554433 344 88999999999999999987 89999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHhccc--CCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 631 AEMETKLGE-IDRARAIYAHCSQIC--DPRVTAGFWAAWKSFEITHGNEDTMREMLRIK 686 (703)
Q Consensus 631 a~~~~~~g~-~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 686 (703)
..++.+.|+ .+.+..+.+++++.. .+. ....+...++.....|+.++|.++++..
T Consensus 227 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 227 LGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999998 444667888877763 122 5788999999999999999888877543
No 103
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.43 E-value=2.3e-12 Score=128.54 Aligned_cols=209 Identities=11% Similarity=0.078 Sum_probs=152.7
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYT--KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
+.++...|++++|...|++++.+.+. ++......|..++.++...|++++|+..|++|+...|......
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~--------- 114 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR--------- 114 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---------
Confidence 45667799999999999999987432 2223357899999999999999999999999998765421000
Q ss_pred HHhhHHHHHHHHHHHHhc-CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc----h
Q psy6461 477 VYKSIKLWSLYADLEESF-GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY----A 551 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~-~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~ 551 (703)
.....+...+.++... |+ +++|...|+++++..|... .
T Consensus 115 --~~a~~~~~lg~~~~~~lg~-----------------------------------~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 115 --RGANFKFELGEILENDLHD-----------------------------------YAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp --HHHHHHHHHHHHHHHTTCC-----------------------------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHHHHHHHhhcC-----------------------------------HHHHHHHHHHHHHHHHhCCChHHH
Confidence 0134566666666653 55 4999999999999887541 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH-----HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH--
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF-----EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR-- 624 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-- 624 (703)
..++..+|.++...|++++|+..|++++...|.+... ..+...+......|++++|+..|+++++..|+.+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3578999999999999999999999999998875321 245555666667899999999999999999976532
Q ss_pred -HHHHHHHHHHH--HcCCHHHHHHHHHHHhcc
Q psy6461 625 -QMCLKFAEMET--KLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 625 -~~~~~~a~~~~--~~g~~~~A~~~~~~a~~~ 653 (703)
..+..++..+. ..+++++|+..|++++.+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 13333444333 356799999999998887
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.42 E-value=7.4e-12 Score=119.60 Aligned_cols=212 Identities=7% Similarity=-0.120 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+..++..|..+...|++++|+..|+++++..|.++ .....++.+|.++.+.|++++|+..|+++++..|++..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~----- 76 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN----- 76 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-----
Confidence 356788889999999999999999999999988764 22368899999999999999999999999999998521
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
....++..+.++...+.. .++ .|..........++.++|...|+++++..|++.
T Consensus 77 ---------~~~a~~~~g~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 77 ---------IDYVMYMRGLTNMALDDS-ALQ----------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp ---------HHHHHHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred ---------HHHHHHHHHHHHHhhhhh-hhh----------------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 123555555555443211 000 000000111124567999999999999999983
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch-HHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT-RQMCLK 629 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~ 629 (703)
.++.....+....+.. .......+.++.+.|++++|...|+++++..|+++. ..++..
T Consensus 131 --~a~~a~~~l~~~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 189 (225)
T 2yhc_A 131 --YTTDATKRLVFLKDRL-------------------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL 189 (225)
T ss_dssp --THHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence 2332222111110000 011123345556688999999999999999998873 358899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
.+.++.+.|++++|+..++++....|
T Consensus 190 l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 190 MENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 99999999999999999998887744
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.41 E-value=3.1e-12 Score=113.05 Aligned_cols=115 Identities=6% Similarity=-0.028 Sum_probs=103.8
Q ss_pred CchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q psy6461 16 EDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNT 94 (703)
Q Consensus 16 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~ 94 (703)
....|++++..+|.+...|..++.... .|++++|...|+++++.+|.++..|..++..+... |++++|...
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~ 77 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM--------GQYDLAIHS 77 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH--------hhHHHHHHH
Confidence 356789999999999999999998887 99999999999999999999999999888877654 889999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 95 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
|+++++.+|+++.+|..++.++...|++++|...|+++++..|.
T Consensus 78 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 78 YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999884
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.41 E-value=7.9e-13 Score=116.69 Aligned_cols=116 Identities=8% Similarity=-0.040 Sum_probs=108.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHH
Q psy6461 51 TIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFD 130 (703)
Q Consensus 51 ~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 130 (703)
..|+++++.+|++...|..++..+... |++++|...|++++..+|+++.+|..+|.++...|++++|...|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~--------g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~ 94 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNK--------GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 467788899999999999999887654 899999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 131 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
++++.+| .++.+|..++.++...|++++|+..|+++++..|++.
T Consensus 95 ~al~l~P--~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 95 VAFALGK--NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHSS--SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999 4689999999999999999999999999999999874
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.40 E-value=3.1e-12 Score=109.48 Aligned_cols=117 Identities=11% Similarity=0.013 Sum_probs=105.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q psy6461 55 RSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134 (703)
Q Consensus 55 ~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 134 (703)
|+..++|+....|...+..+... |++++|...|+++++.+|.++.+|..+|.++...|++++|...|+++++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKK--------GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 45568899999998888877664 8999999999999999999999999999999999999999999999999
Q ss_pred hCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIE 181 (703)
Q Consensus 135 ~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 181 (703)
.+| .+..+|..++.++...|++++|+..|+++++.+|++.+++..
T Consensus 76 ~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~ 120 (126)
T 4gco_A 76 LDS--KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120 (126)
T ss_dssp HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhh--hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 999 568899999999999999999999999999999999865543
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.38 E-value=6e-12 Score=138.49 Aligned_cols=161 Identities=15% Similarity=0.126 Sum_probs=134.1
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHH
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDV 91 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A 91 (703)
.++....|+++++.+|.+...|..++..+. .|++++|...|+++++.+|++...|..++..+... |++++|
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A 76 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ--------QRHAEA 76 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT--------TCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHH
Confidence 445567899999999999999999999888 99999999999999999999999999999887764 899999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhc---CChHHHHHHHHHH
Q psy6461 92 NNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH---AVPETAVRVFRRY 168 (703)
Q Consensus 92 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~ 168 (703)
...|+++++.+|+++.+|..++.++...|++++|...|+++++..| .+..+|..++.++... |+.++|...|+++
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 4578889999999999 9999999999999
Q ss_pred HhhCCCCHHHHHHHH
Q psy6461 169 LKLFPEDAEDYIEYL 183 (703)
Q Consensus 169 l~~~p~~~~~~~~~~ 183 (703)
++.+|.+...+..+.
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999999876554333
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=2.3e-11 Score=104.99 Aligned_cols=134 Identities=17% Similarity=0.296 Sum_probs=122.5
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
++|..++..+. .|++++|...|+++++..|.+...|..++...... |++++|...|++++...|.++.+|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--------GDYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHCCCchHHHH
Confidence 56788888777 89999999999999999999999999988876654 8899999999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
.++.++...|++++|...|++++...|. ...+|..++.++...|++++|...|++++..+|.+
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999994 57888899999999999999999999999998864
No 110
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.35 E-value=3.2e-12 Score=112.20 Aligned_cols=113 Identities=7% Similarity=-0.060 Sum_probs=94.3
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..|++++..+|.+...|..++.... .|++++|...|+++++.+|.++..|..++..+... |++++|...|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~ 76 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL--------GLYEQALQSYS 76 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH--------hhHHHHHHHHH
Confidence 4577788888888888888888777 88899999999999999999888888888776654 78888999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
+++..+|+++.+|..++.++...|++++|...|+++++..|.
T Consensus 77 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999888988888888888888889999999999998888884
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.35 E-value=1.9e-11 Score=134.37 Aligned_cols=156 Identities=9% Similarity=0.036 Sum_probs=87.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|+.++|+..|++++... | ....+|..+|..+...|++++|+..|+++++.+|.+. ..|..++.++...|+
T Consensus 3 g~~~~A~~~~~~al~~~-p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-P-----QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP----EAVARLGRVRWTQQR 72 (568)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH----HHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCC
Confidence 45566666666665542 2 2456666666666666666666666666666666655 566666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|...|+++++.+|++ ...|..++.++...|++
T Consensus 73 ~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~---------------------------- 107 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEH-----------------PGIALWLGHALEDAGQA---------------------------- 107 (568)
T ss_dssp HHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCH----------------------------
T ss_pred HHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHcCCH----------------------------
Confidence 666666666666666653 55566666555555443
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc---CChHHHHHHHHHHhhccCcc
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH---GLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~ 585 (703)
++|.+.|+++++.+|++ ..++..++.++... |++++|...|+++++..|.+
T Consensus 108 -------~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 108 -------EAAAAAYTRAHQLLPEE--PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp -------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred -------HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 66666666666666665 45666666666666 66666666666666666654
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.34 E-value=2.9e-12 Score=113.18 Aligned_cols=119 Identities=13% Similarity=0.020 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHH
Q psy6461 49 INTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHV 128 (703)
Q Consensus 49 a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 128 (703)
+-..|+++++.+|.+...|..++...... |++++|...|++++..+|+++.+|..++.++...|++++|...
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQS--------GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34578999999999999999998887664 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 129 FDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 129 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
|++++...| .++.+|..++.++...|++++|+..|+++++.+|+++.
T Consensus 78 ~~~al~l~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 78 YSYGAVMDI--XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHhcCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999 45888999999999999999999999999999988753
No 113
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.32 E-value=9e-10 Score=109.31 Aligned_cols=233 Identities=11% Similarity=0.086 Sum_probs=176.2
Q ss_pred CCc-hhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCC----------hHHHHHHHHHhhccCCCCcchHHHHHH
Q psy6461 366 GKP-LDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ----------LEDARLIFDKATLVPYTKVEDLATVWC 434 (703)
Q Consensus 366 ~~~-~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~ 434 (703)
|.+ ++|++.++.++... | ....+|...+.++...+. ++++...++.++..+|++. .+|.
T Consensus 43 ~e~s~eaL~~t~~~L~~n-P-----~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny----~aW~ 112 (331)
T 3dss_A 43 GELDESVLELTSQILGAN-P-----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWH 112 (331)
T ss_dssp TCCSHHHHHHHHHHHTTC-T-----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred CCCCHHHHHHHHHHHHHC-c-----hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH----HHHH
Confidence 443 47888888888763 3 356788888888775554 6889999999999999997 9999
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCch
Q psy6461 435 EWAELELRAG--QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYI 512 (703)
Q Consensus 435 ~~~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~ 512 (703)
.-+.+....+ .+++++..++++++.+|++ ...|....-+....|..
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-----------------y~AW~~R~~vl~~l~~~--------------- 160 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERN-----------------FHCWDYRRFVAAQAAVA--------------- 160 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCC---------------
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhCcC---------------
Confidence 9988888877 4899999999999999985 78888877666655441
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc--------------CChHHHHHHHHHH
Q psy6461 513 FDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH--------------GLARHAMAVYERA 578 (703)
Q Consensus 513 ~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~--------------g~~~~A~~~~~~a 578 (703)
.+++.+.++++++.+|.+ ..+|...+.+.... +.+++++..+.++
T Consensus 161 -------------------~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a 219 (331)
T 3dss_A 161 -------------------PAEELAFTDSLITRNFSN--YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 219 (331)
T ss_dssp -------------------HHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH
Confidence 378999999999999999 45898888887766 4578999999999
Q ss_pred hhccCcchHHHHHHHHHHHHH---------HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHH---HcCCHHHHHHH
Q psy6461 579 TGAVLPEEMFEMFNIYIKKAA---------EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET---KLGEIDRARAI 646 (703)
Q Consensus 579 l~~~p~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~---~~g~~~~A~~~ 646 (703)
+...|++.+.+.|..++.... ..+-++++.+.+.++++..|++.- .+...+.+.. ..|..++++.+
T Consensus 220 i~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w--~l~~~~~~~~~~~~~~~~~~~~~~ 297 (331)
T 3dss_A 220 FFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW--CLLTIILLMRALDPLLYEKETLQY 297 (331)
T ss_dssp HHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch--HHHHHHHHHHhhcccccHHHHHHH
Confidence 999999977666554443221 013467899999999999998732 3334443332 35778899999
Q ss_pred HHHHhcccCCCCChHhHHH
Q psy6461 647 YAHCSQICDPRVTAGFWAA 665 (703)
Q Consensus 647 ~~~a~~~~~~~~~~~~~~~ 665 (703)
+.+.+++ ||. ....|..
T Consensus 298 l~~l~~~-Dp~-r~~~y~d 314 (331)
T 3dss_A 298 FSTLKAV-DPM-RAAYLDD 314 (331)
T ss_dssp HHHHHHH-CGG-GHHHHHH
T ss_pred HHHHHHh-Ccc-hhhHHHH
Confidence 9999998 454 2444443
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.32 E-value=1.3e-11 Score=118.85 Aligned_cols=219 Identities=12% Similarity=0.002 Sum_probs=167.8
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc-hhh---
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEW-------AELELRAGQEEAALRLMARATATPARPVAYHDE-AET--- 472 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-~~~--- 472 (703)
..++...|+..|.+++..+|..+ ..|+.+ +.++.+.++..++...+.+++++.|+.+..... +..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~----Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC----DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhh----HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 47899999999999999999998 999999 788888888899999999999999987643322 110
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchH
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAK 552 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 552 (703)
++.++..-..++..|+.++...|++ ++|+++|+.++...|++ .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y-----------------------------------~eA~~~l~~~~~~~p~~--~ 136 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNY-----------------------------------ADAMEALEAAPVAGSEH--L 136 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCH-----------------------------------HHHHHHHTSSCCTTCHH--H
T ss_pred cccccCCHhHHHHHHHHHHHHCCCH-----------------------------------HHHHHHHHHHHhcCCch--H
Confidence 1111111256677777777666654 99999999999888887 4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC--CCcchHHHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL--PEEPTRQMCLKF 630 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 630 (703)
.+...+.++.+.|++++|+..|+++....++.....++......+..+|++++|...|++++... |.. ....++..
T Consensus 137 -~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~ 214 (282)
T 4f3v_A 137 -VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYL 214 (282)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHH
Confidence 78888889999999999999999887654322112345555666777899999999999998543 331 23488999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHH
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKS 668 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 668 (703)
+.++.++|+.++|+.+|++++... |+ ...+..+..
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~-P~--~~~~~aL~~ 249 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTH-PE--PKVAAALKD 249 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-CC--HHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-Cc--HHHHHHHhC
Confidence 999999999999999999999984 44 666665543
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.32 E-value=3e-10 Score=113.17 Aligned_cols=244 Identities=12% Similarity=0.075 Sum_probs=178.9
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc-
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND-QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA- 443 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~- 443 (703)
+..++|++.+++++... | ....+|...+.++...| .+++++..+++++..+|++. .+|..-..+..+.
T Consensus 68 e~se~AL~lt~~~L~~n-P-----~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny----~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-P-----AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY----QVWHHRLLLLDRIS 137 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhC-c-----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhc
Confidence 44568999999999874 3 35789999999999888 59999999999999999997 9999999888776
Q ss_pred C-CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHH
Q psy6461 444 G-QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522 (703)
Q Consensus 444 ~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~ 522 (703)
+ ++++++..+++++..+|++ ...|....-+....|.. + +....
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkN-----------------y~AW~~R~wvl~~l~~~---~--------~~~~~-------- 181 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKN-----------------YHTWAYLHWLYSHFSTL---G--------RISEA-------- 181 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTC-----------------HHHHHHHHHHHHHHHHT---T--------CCCHH--------
T ss_pred CCChHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhccc---c--------ccchh--------
Confidence 7 8899999999999999985 78888877766654433 0 00000
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC-------hHHHHHHHHHHhhccCcchHHHHHHHHH
Q psy6461 523 FLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGL-------ARHAMAVYERATGAVLPEEMFEMFNIYI 595 (703)
Q Consensus 523 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 595 (703)
-..++.+.++++++.+|.+ ..+|...+.+....|. +++++..+++++...|.+.+.+.+...+
T Consensus 182 --------~~~eELe~~~k~I~~dp~N--~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 182 --------QWGSELDWCNEMLRVDGRN--NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF 251 (349)
T ss_dssp --------HHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0248999999999999999 5699999999888886 6899999999999999996655554333
Q ss_pred HHHHHhcCch-----------------HHHHHHHHHHHhCCC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 596 KKAAEIYGIP-----------------KTRQIYERAIESLPE-------EPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 596 ~~~~~~~~~~-----------------~A~~~~~~al~~~p~-------~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
.. ..|... .-..+-+-+++..+. ...+.++.-+++++...|+.++|...++...
T Consensus 252 l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 252 LK--HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HH--HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH--hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22 222220 112334444443222 1234477788899999999999999999987
Q ss_pred cccCCCCChHhHHHHHH
Q psy6461 652 QICDPRVTAGFWAAWKS 668 (703)
Q Consensus 652 ~~~~~~~~~~~~~~~~~ 668 (703)
+..||- -...|+..+.
T Consensus 330 ~~~dpi-r~~yw~~~~~ 345 (349)
T 3q7a_A 330 SEYDQM-RAGYWEFRRR 345 (349)
T ss_dssp HTTCGG-GHHHHHHHHH
T ss_pred hhhChH-HHHHHHHHHH
Confidence 555554 4778877654
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=8.4e-11 Score=101.39 Aligned_cols=133 Identities=16% Similarity=0.279 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
+|..+|..+...|++++|..+|+++++..|.++ ..|..++.++...|++++|...+++++...|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 68 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------- 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch----hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----------
Confidence 577788888888889999999998888877776 778888888888888999999998888888764
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
...|..++.++...|++ ++|...++++++..|.+ ..
T Consensus 69 -------~~~~~~l~~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~--~~ 104 (136)
T 2fo7_A 69 -------AEAWYNLGNAYYKQGDY-----------------------------------DEAIEYYQKALELDPRS--AE 104 (136)
T ss_dssp -------HHHHHHHHHHHHTTTCH-----------------------------------HHHHHHHHHHHHHCTTC--HH
T ss_pred -------hHHHHHHHHHHHHhcCH-----------------------------------HHHHHHHHHHHHhCCCC--hH
Confidence 66777777666665554 88888888888888877 56
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
.+..++.++...|++++|...+++++...|.
T Consensus 105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 105 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7888888888888888888888888887764
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.30 E-value=4.1e-10 Score=112.19 Aligned_cols=233 Identities=10% Similarity=0.019 Sum_probs=180.5
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG-QEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
+.+++-.+..+....+..++|+..+++++..+|.+. .+|+.-+.+....| .+++++..+++++..+|++
T Consensus 53 y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y----taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn------ 122 (349)
T 3q7a_A 53 YKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHY----TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS------ 122 (349)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc------
Confidence 345555555555566777899999999999999997 99999999998888 5999999999999999995
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhc-CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESF-GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
..+|.....+.... +. +++++...++++++.+|.
T Consensus 123 -----------y~aW~hR~wlL~~l~~~----------------------------------~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 123 -----------YQVWHHRLLLLDRISPQ----------------------------------DPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp -----------HHHHHHHHHHHHHHCCS----------------------------------CCHHHHHHHHHHTSSCTT
T ss_pred -----------HHHHHHHHHHHHHhcCC----------------------------------ChHHHHHHHHHHHHhCCC
Confidence 89999988777665 31 248999999999999999
Q ss_pred cchHHHHHHHHHHHHHcCChH--------HHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC-------chHHHHHHHH
Q psy6461 549 RYAKTLYLLYAKLEEEHGLAR--------HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG-------IPKTRQIYER 613 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~ 613 (703)
+ ..+|..-+.+....|.++ +++..++++++.+|.+...+.+..++.. ..++ ++++.+.+.+
T Consensus 158 N--y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~--~l~~~~~~~~~~~eELe~~~~ 233 (349)
T 3q7a_A 158 N--YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV--SRPGAETSSRSLQDELIYILK 233 (349)
T ss_dssp C--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT--TSTTCCCCHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--hccccccchHHHHHHHHHHHH
Confidence 9 569999999888888887 9999999999999999665555554433 3333 6889999999
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcCCHH-----------------HHHHHHHHHhcccCCC-------CChHhHHHHHHH
Q psy6461 614 AIESLPEEPTRQMCLKFAEMETKLGEID-----------------RARAIYAHCSQICDPR-------VTAGFWAAWKSF 669 (703)
Q Consensus 614 al~~~p~~~~~~~~~~~a~~~~~~g~~~-----------------~A~~~~~~a~~~~~~~-------~~~~~~~~~~~~ 669 (703)
++..+|++.. +|..+..++.+.|... .--.+-+.|.+..+.. .....+..++++
T Consensus 234 aI~~~P~n~S--aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 311 (349)
T 3q7a_A 234 SIHLIPHNVS--AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADS 311 (349)
T ss_dssp HHHHCTTCHH--HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHH
T ss_pred HHHhCCCCHH--HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHH
Confidence 9999999987 8998888888877641 1124455566554322 367888999999
Q ss_pred HHHcCCHHHHHHHHH
Q psy6461 670 EITHGNEDTMREMLR 684 (703)
Q Consensus 670 ~~~~g~~~~~~~~~~ 684 (703)
+...|+.++|.++++
T Consensus 312 ~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 312 FIEQNRVDDAAKVFE 326 (349)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHH
Confidence 998999888877663
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.27 E-value=1.2e-11 Score=108.55 Aligned_cols=117 Identities=10% Similarity=-0.037 Sum_probs=105.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHH
Q psy6461 51 TIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFD 130 (703)
Q Consensus 51 ~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 130 (703)
..|+++++.+|.+...|..++...... |++++|...|++++..+|+++.+|..++.++...|++++|...|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 76 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA--------GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH--------ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 578899999999999999988877654 899999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 131 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+++..+| .++.+|..++.++...|++++|+..|+++++.+|++..
T Consensus 77 ~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 77 YGALMDI--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 9999999 45888999999999999999999999999999988753
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.26 E-value=3.9e-11 Score=109.64 Aligned_cols=124 Identities=13% Similarity=0.133 Sum_probs=95.4
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhccC
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRF-LMDQHK 121 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~ 121 (703)
.+++++|...|+++++.+|.+...|..++..+... |++++|...|+++++..|+++.+|..++.+ +...|+
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ--------NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ 94 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence 57778888888888888888888888877776553 778888888888888888888888888888 667777
Q ss_pred h--HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 122 I--TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 122 ~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
+ ++|...|+++++..| .+..+|..++.++...|++++|+..|+++++.+|.+.
T Consensus 95 ~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp CCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred cchHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 7 888888888888888 3467777778887788888888888888888887764
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.26 E-value=2.5e-11 Score=120.17 Aligned_cols=193 Identities=11% Similarity=0.054 Sum_probs=145.2
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....+...|..+...|++++|+..|+++++.+|.++ .+|..+|.++...|++++|...++++++.+|++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------- 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELDGQS------- 71 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------
Confidence 456788889999999999999999999999999887 899999999999999999999999999999985
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
...++.++.++...|++ ++|...|+++++..|++.
T Consensus 72 ----------~~~~~~lg~~~~~~g~~-----------------------------------~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 72 ----------VKAHFFLGQCQLEMESY-----------------------------------DEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp ----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCccch
Confidence 78888888888877765 999999999999988652
Q ss_pred ---hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHH
Q psy6461 551 ---AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMC 627 (703)
Q Consensus 551 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 627 (703)
...+|..+.. .++...........|.+.. +...+..+. .|++++|...++++++..|++.. +.
T Consensus 107 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~--~~ 172 (281)
T 2c2l_A 107 LNFGDDIPSALRI--------AKKKRWNSIEERRIHQESE--LHSYLTRLI--AAERERELEECQRNHEGHEDDGH--IR 172 (281)
T ss_dssp CCCCSHHHHHHHH--------HHHHHHHHHHHTCCCCCCH--HHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHH--HT
T ss_pred hhHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhHH--HHHHHHHHH--HHHHHHHHHHHHhhhccccchhh--hh
Confidence 1123333311 1222223333344555432 333333332 57889999999999999998754 55
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHhcc
Q psy6461 628 LKFAEMETKL-GEIDRARAIYAHCSQI 653 (703)
Q Consensus 628 ~~~a~~~~~~-g~~~~A~~~~~~a~~~ 653 (703)
..+..++.+. +.+++|..+|.++.+.
T Consensus 173 ~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 173 AQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6666666665 6788999999988764
No 121
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.26 E-value=5.5e-11 Score=98.91 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=95.8
Q ss_pred hcCCCcHHHHHHHHhhhc--CCc------hhHHHHHHHHHHhcCCCc--cCCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 348 RQNPHNVLEWHKRVRLFD--GKP------LDIIRTYTEAVKTVDPKL--AVGKLHTLWIEFGKFYEVNDQLEDARLIFDK 417 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~~~--~~~------~~a~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 417 (703)
-.+|.+++.|+.++.+.+ |++ +..+++|++|+..+||.. .+..+..+|+.||.+ ...++.++|+++|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 457999999999999887 898 899999999999998864 334678999999988 456999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 418 ATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
|++++. .|+.+|+.+|+++.++|+...|++++.+|+..+|.+
T Consensus 86 a~~~hK----kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 86 ARANCK----KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHCT----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHhH----HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 998722 236999999999999999999999999999999985
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.25 E-value=2.7e-10 Score=104.04 Aligned_cols=125 Identities=10% Similarity=0.058 Sum_probs=111.6
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhcccCCCCchhH--
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKL-RRKQVKGKVITDPSY-- 88 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~-~~~~~~~~~~~~~~~-- 88 (703)
..+....|+++++.+|.+...|..++..+. .|++++|...|+++++.+|.++.+|..++.. .... |++
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~--------~~~~~ 97 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA--------SQHMT 97 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--------TTCCC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--------CCcch
Confidence 344557899999999999999999999988 9999999999999999999999999999987 4443 777
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHH
Q psy6461 89 EDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPL 147 (703)
Q Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 147 (703)
++|...|+++++.+|+++.+|..++.++...|++++|...|+++++..|.+ ...+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR--INRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT--SCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--ccHHHH
Confidence 999999999999999999999999999999999999999999999999953 444433
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.24 E-value=3.8e-11 Score=122.14 Aligned_cols=148 Identities=7% Similarity=-0.010 Sum_probs=126.3
Q ss_pred CCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHh
Q psy6461 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---------------YKLWYNYLKLRRKQ 77 (703)
Q Consensus 14 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---------------~~~w~~~~~~~~~~ 77 (703)
.+....|++++..+|.+...|..++..+. .+++++|...|+++++.+|.+ ..+|..++..+...
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445778888889999999999999888 999999999999999999999 58888888877664
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCC
Q psy6461 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAV 157 (703)
Q Consensus 78 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 157 (703)
|++++|...|+++++.+|+++.+|..++.++...|++++|+..|+++++..| .+..+|..++.++...|+
T Consensus 210 --------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 210 --------QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp --------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 457788888888888888
Q ss_pred hHHH-HHHHHHHHhh
Q psy6461 158 PETA-VRVFRRYLKL 171 (703)
Q Consensus 158 ~~~A-~~~~~~~l~~ 171 (703)
.++| ...|++++..
T Consensus 280 ~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 280 QLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 7777 4566666543
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.2e-10 Score=99.70 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=93.6
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
|.+.+.|...+.... .|++++|...|+++++.+|.++.+|..++..+... |++++|...|+++++.+|+++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--------MSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCcH
Confidence 456677888887777 88899999999999999998888888888877654 788889999999998888888
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhC------CcccccccHHHHHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRAL------PITQHHRVWPLYLSFV 152 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~ 152 (703)
.+|..++.++...|++++|...|+++++.. | .+..++..+..+.
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p--~~~~~~~~l~~~~ 122 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS--SAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch--hHHHHHHHHHHHH
Confidence 888888888888889999999999988888 6 3455555555543
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.23 E-value=2.4e-10 Score=114.73 Aligned_cols=197 Identities=12% Similarity=0.014 Sum_probs=131.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHH
Q psy6461 437 AELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIW 516 (703)
Q Consensus 437 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~ 516 (703)
+.++...|++++|...|.+++...+..-+.. .....+...+.++...|+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~a~~~~~lg~~~~~~g~-------------------- 91 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLF-----------HAAKAFEQAGMMLKDLQR-------------------- 91 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHHHHhCCC--------------------
Confidence 4556678899999999998887654321000 013344455555554444
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc--c--hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch----HH
Q psy6461 517 NTYLTKFLSRYGGTKLERARDLFEQCLEACPPR--Y--AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE----MF 588 (703)
Q Consensus 517 ~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~ 588 (703)
+++|+..|++++++.+.. . ....+..+|.++.. |++++|+..|++++...|... ..
T Consensus 92 ---------------~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 92 ---------------MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp ---------------GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 488888888888874322 1 13577888888888 999999999999988876431 23
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCC---hH
Q psy6461 589 EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT----RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVT---AG 661 (703)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~ 661 (703)
..+......+...|++++|...|+++++..|++.. ...++..+.++...|++++|+..|++++ +.|.... ..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 45666777777888999999999999987664431 2366777778888899999999999999 6443211 12
Q ss_pred hHHHHHHHHHHcCCHHHHHHH
Q psy6461 662 FWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 662 ~~~~~~~~~~~~g~~~~~~~~ 682 (703)
+...+.... ..|+.+.+.++
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHHH
Confidence 233333322 45777777664
No 126
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.23 E-value=4.2e-09 Score=104.51 Aligned_cols=221 Identities=9% Similarity=0.001 Sum_probs=169.4
Q ss_pred HcCCh-HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 404 VNDQL-EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ----------EEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 404 ~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
+.|++ ++|...+.+++..+|.+. .+|+.-..+....+. +++++..++.++..+|++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~y----taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn--------- 107 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--------- 107 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC---------
Confidence 35555 489999999999999997 899988887766544 688999999999999984
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchH
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAK 552 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 552 (703)
..+|.....+....+.. .++++...++++++.+|.+ .
T Consensus 108 --------y~aW~hR~wlL~~l~~~---------------------------------~~~~EL~~~~k~l~~dprN--y 144 (331)
T 3dss_A 108 --------YGTWHHRCWLLSRLPEP---------------------------------NWARELELCARFLEADERN--F 144 (331)
T ss_dssp --------HHHHHHHHHHHHHCSSC---------------------------------CHHHHHHHHHHHHHHCTTC--H
T ss_pred --------HHHHHHHHHHHhccCcc---------------------------------cHHHHHHHHHHHHHhCCCC--H
Confidence 89999988777766531 2488999999999999999 5
Q ss_pred HHHHHHHHHHHHcCC-hHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH------------hcCchHHHHHHHHHHHhCC
Q psy6461 553 TLYLLYAKLEEEHGL-ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE------------IYGIPKTRQIYERAIESLP 619 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~------------~~~~~~A~~~~~~al~~~p 619 (703)
.+|..-+.+....|. +++++..+++++..+|.+.+.+.+..++..... .+.++++.+.+.+++..+|
T Consensus 145 ~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 145 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC
Confidence 699999999999998 599999999999999999776666666554431 0457899999999999999
Q ss_pred CcchHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH---HcCCHHHHHHHHH
Q psy6461 620 EEPTRQMCLKFAEMETKL-----------GEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI---THGNEDTMREMLR 684 (703)
Q Consensus 620 ~~~~~~~~~~~a~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~ 684 (703)
++.. +|.....++.+. +.+++++..++.++++. |+ +.=.+...+.+.. ..|..++..+.+.
T Consensus 225 ~d~S--aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~ 299 (331)
T 3dss_A 225 NDQS--AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PE-NKWCLLTIILLMRALDPLLYEKETLQYFS 299 (331)
T ss_dssp TCHH--HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHH
T ss_pred CCHH--HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cc-cchHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 9987 897665555554 35789999999999984 55 2222222222222 2355555555554
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.21 E-value=3.2e-11 Score=122.62 Aligned_cols=124 Identities=10% Similarity=0.053 Sum_probs=114.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---------------HH
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---------------PR 107 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~ 107 (703)
..++++|...|+++++..|.+...|..++..+... |++++|...|+++++..|.+ ..
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~--------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKE--------GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 46788899999999999999999999999887765 89999999999999999998 69
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 108 IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 108 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
+|..++.++...|++++|...|+++++.+| .+..+|..++.++...|++++|+..|+++++.+|++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999999999 4588899999999999999999999999999999885
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.21 E-value=2.2e-10 Score=98.63 Aligned_cols=121 Identities=13% Similarity=0.032 Sum_probs=107.5
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
..|.+...|..++..+. .+++++|...|+++++.+|.+...|..++..+.. .|++++|...|+++++..|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK--------LLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT--------TTCHHHHHHHHHHHHHHCTT
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHhCCC
Confidence 35788899999998888 9999999999999999999999999998887644 38899999999999999999
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcC
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA 156 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 156 (703)
++.+|..++.++...|++++|...|+++++..| ....+|..++.++...|
T Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS--SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--GGTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 45777888887776654
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.20 E-value=4e-10 Score=101.33 Aligned_cols=131 Identities=9% Similarity=0.005 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
....|..++.... .|++++|...|+++++.+|.+..+|..++...... |++++|...|+++++..|.++.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--------ECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCcccHHH
Confidence 3466777777766 88888888888888888888888888887776553 77888888888888888888888
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHH--HHHHHhcCChHHHHHHHHHHHh
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLY--LSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
|..++.++...|++++|...|+++++..|. +..+|..+ +..+...|++++|+..+.+...
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888888888888888884 34555333 3335556667777777666543
No 130
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.19 E-value=3.3e-10 Score=113.73 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=158.3
Q ss_pred CCchhHHHHHHHHHHhcCCCcc--CCc---hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC--cchHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLA--VGK---LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK--VEDLATVWCEWAE 438 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~--~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~ 438 (703)
|++.+|.+.++++....+.... .+. ....+...+.++...|++++|...|++++...+.. .......+..++.
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666677766654332110 111 22355556777888999999999999999885432 2233468889999
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHH
Q psy6461 439 LELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNT 518 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~ 518 (703)
++...|++++|+..|++++...+...+.. .....+...+.++.. |+
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~-----------~~a~~~~~lg~~~~~-g~---------------------- 130 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGTPD-----------TAAMALDRAGKLMEP-LD---------------------- 130 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTCHH-----------HHHHHHHHHHHHHTT-TC----------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHHHHc-CC----------------------
Confidence 99999999999999999998754311000 013445555555544 44
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch----HHHH
Q psy6461 519 YLTKFLSRYGGTKLERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE----MFEM 590 (703)
Q Consensus 519 y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~ 590 (703)
+++|...|++++...|... ...++..+|.++...|++++|+..|++++...|.+. ....
T Consensus 131 -------------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 131 -------------LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 4999999999999876431 136889999999999999999999999999876542 1224
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch---HHHHHHHHHHHHHcCCHHHHHH
Q psy6461 591 FNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT---RQMCLKFAEMETKLGEIDRARA 645 (703)
Q Consensus 591 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~a~~~~~~g~~~~A~~ 645 (703)
+...+......|++++|+..|++++ ..|+... ......++..+ ..|+.+.+..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 4455555566799999999999999 9986542 12334444433 5677665555
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.19 E-value=7.8e-11 Score=116.52 Aligned_cols=156 Identities=10% Similarity=-0.018 Sum_probs=119.3
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
|.+...|..++..+. .|++++|...|+++++.+|.+..+|..++..+... |++++|...|+++++.+|+++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--------QQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHTTSCTTCH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCCH
Confidence 678889999998888 99999999999999999999999999999887764 899999999999999999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc---cccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHH--HHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH---HRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED--YIE 181 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~ 181 (703)
.+|..+|.++...|++++|...|+++++..|.+.. ..+|..+.. .++...........|.+... +..
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~l~ 144 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI--------AKKKRWNSIEERRIHQESELHSYLT 144 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH--------HHHHHHHHHHHTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999885311 222332211 12222222333445555442 222
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q psy6461 182 YLSSIERLDEAAVKLAYIV 200 (703)
Q Consensus 182 ~~~~~~~~~~A~~~~~~~~ 200 (703)
.+ ..|++++|++.++.++
T Consensus 145 ~l-~~~~~~~A~~~~~~al 162 (281)
T 2c2l_A 145 RL-IAAERERELEECQRNH 162 (281)
T ss_dssp HH-HHHHHHHHHTTTSGGG
T ss_pred HH-HHHHHHHHHHHHHhhh
Confidence 22 3677888877777665
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.18 E-value=2.4e-10 Score=97.99 Aligned_cols=124 Identities=10% Similarity=0.031 Sum_probs=106.7
Q ss_pred hcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 25 LRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 25 ~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
+.+|.+...|..++.... .+++++|...|+++++.+|.+...|..++...... |++++|...|+++++..|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL--------GNYAGAVQDCERAICIDP 77 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCT
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------hchHHHHHHHHHHHhcCc
Confidence 346777888888888887 89999999999999999999999999888877654 889999999999999999
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 104 KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
+++.+|..++.++...|++++|...|+++++..|. ...+|..++.++...|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD--NETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999984 467788888887766653
No 133
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.16 E-value=1.4e-10 Score=98.22 Aligned_cols=99 Identities=9% Similarity=-0.035 Sum_probs=82.0
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
..|..++.... .|++++|...|+++++.+|++...|..++..+... |++++|...|+++++.+|+++.+|.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------g~~~~A~~~~~~al~l~P~~~~~~~ 89 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--------EKDGLAIIALNHARMLDPKDIAVHA 89 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 45777777666 88999999999999999999999998888877654 7888999999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
.++.++...|++++|...|+++++..|.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999998899999999999999988884
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.15 E-value=3.8e-10 Score=101.60 Aligned_cols=110 Identities=11% Similarity=0.036 Sum_probs=91.5
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
.+|.+...|..++..+. .+++++|...|+++++.+|.+..+|..++..+... |++++|...|+++++.+|+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS--------GQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTT
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCC
Confidence 35667788888888777 88888898899999888888888888888877654 7888888888888888888
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVW 145 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 145 (703)
++.+|..++.++...|++++|...|+++++..|. +...|
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 116 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN--GGSDA 116 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS--SCCHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--chHHH
Confidence 8888888888888888888888888888888884 34544
No 135
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.14 E-value=4.9e-10 Score=97.23 Aligned_cols=119 Identities=10% Similarity=-0.025 Sum_probs=97.7
Q ss_pred hcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 25 LRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 25 ~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
..+|.+...|..++..+. .|++++|...|+++++.+|.++.+|..++..+... |++++|...|+++++.+|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~p 74 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--------QQPEQALADCRRALELDG 74 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCT
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCc
Confidence 457888899999998888 89999999999999999999999999988887654 889999999999999999
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc---ccccHHHHHHH
Q psy6461 104 KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ---HHRVWPLYLSF 151 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~ 151 (703)
+++.+|..++.++...|++++|...|++++...|... ...++..+...
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888411 34444444444
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.13 E-value=1.5e-09 Score=92.05 Aligned_cols=118 Identities=15% Similarity=0.248 Sum_probs=93.9
Q ss_pred CCCC-hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 27 NPFS-VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 27 ~P~~-~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
+|.+ ...|..++.... .+++++|...|+++++..|.+...|..++...... |++++|...|++++...|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--------GDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTT
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHhCCc
Confidence 5655 678888888777 88899999999999988888888888888776553 7888889999998888888
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 154 (703)
++.+|..++.++...|++++|...|+++++..|. ...++..++.++..
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGNAKQK 123 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHh
Confidence 8888888888888888899999999998888884 45666666665543
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.13 E-value=3.5e-10 Score=108.96 Aligned_cols=203 Identities=9% Similarity=-0.039 Sum_probs=157.8
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHH-------HHHHHHcCChHHHHHHHHHhhccCCCCcc-----------
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEF-------GKFYEVNDQLEDARLIFDKATLVPYTKVE----------- 427 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~al~~~~~~~~----------- 427 (703)
++...|+..|.+++... | ..+++|+.+ +..+...+...++...+.+.+.+.|....
T Consensus 20 ~d~~~A~~~F~~a~~~d-P-----~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYD-E-----SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred CCHHHHHHHHHHHHHhC-h-----hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 88899999999999973 4 468999999 78888888889999999999997664321
Q ss_pred ------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHH
Q psy6461 428 ------DLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYE 501 (703)
Q Consensus 428 ------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 501 (703)
.-..+++.|+.++...|++++|...|..++...|.+ . ..+..+.++...++
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~-----------------~-~~~~~a~l~~~~~r----- 150 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH-----------------L-VAWMKAVVYGAAER----- 150 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH-----------------H-HHHHHHHHHHHTTC-----
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch-----------------H-HHHHHHHHHHHcCC-----
Confidence 114788899999999999999999999999888863 4 55555555555554
Q ss_pred hHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q psy6461 502 KGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA 581 (703)
Q Consensus 502 ~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 581 (703)
+++|+..|++++...+......+++.+|..+...|++++|+..|++++..
T Consensus 151 ------------------------------~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 151 ------------------------------WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp ------------------------------HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred ------------------------------HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 49999999977664322111248999999999999999999999999854
Q ss_pred c--CcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 582 V--LPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631 (703)
Q Consensus 582 ~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (703)
. |.. ....+........++|+.++|+.+|++++...|+ +. ++..+.
T Consensus 201 ~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~--~~~aL~ 248 (282)
T 4f3v_A 201 PAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK--VAAALK 248 (282)
T ss_dssp TTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH--HHHHHH
T ss_pred CCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH--HHHHHh
Confidence 4 331 2345556666677789999999999999999998 54 555553
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.13 E-value=8.7e-10 Score=99.08 Aligned_cols=133 Identities=17% Similarity=0.069 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
...|..+|..+...|++++|...|+++++..|.++ .+|..++.++...|++++|+..+++++...|.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIELDKKY-------- 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--------
Confidence 45678888888899999999999999999888886 888999999999999999999999999988874
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
...|..++.++...|++ ++|...|+++++..|.+
T Consensus 81 ---------~~~~~~~a~~~~~~~~~-----------------------------------~~A~~~~~~a~~~~p~~-- 114 (166)
T 1a17_A 81 ---------IKGYYRRAASNMALGKF-----------------------------------RAALRDYETVVKVKPHD-- 114 (166)
T ss_dssp ---------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHSTTC--
T ss_pred ---------HHHHHHHHHHHHHhccH-----------------------------------HHHHHHHHHHHHhCCCC--
Confidence 67788888777776665 88999999999999987
Q ss_pred HHHH--HHHHHHHHHcCChHHHHHHHHHHhhcc
Q psy6461 552 KTLY--LLYAKLEEEHGLARHAMAVYERATGAV 582 (703)
Q Consensus 552 ~~~~--~~~a~~~~~~g~~~~A~~~~~~al~~~ 582 (703)
...+ +..+..+...|++++|+..++++....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 4455 444444777788888888888765543
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.13 E-value=2e-09 Score=101.44 Aligned_cols=147 Identities=11% Similarity=-0.005 Sum_probs=124.2
Q ss_pred HHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHH
Q psy6461 33 HWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLD 111 (703)
Q Consensus 33 ~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 111 (703)
.+..++..+. .|++++|...|++++ .| ++..|..++..+... |++++|...|+++++.+|+++.+|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTIL--------KNMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCccchHHHHH
Confidence 3455666666 899999999999996 34 788999988887654 89999999999999999999999999
Q ss_pred HHHHHHhccChHHHHHHHHHHHHhCCccc--------------ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 112 YGRFLMDQHKITQTRHVFDRALRALPITQ--------------HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 112 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+|.++...|++++|...|+++++..|.+. ...+|..++.++...|++++|+..|+++++.+|++.
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~- 155 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR- 155 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG-
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc-
Confidence 99999999999999999999999888532 127788889999999999999999999999999873
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q psy6461 178 DYIEYLSSIERLDEAAVKLAYI 199 (703)
Q Consensus 178 ~~~~~~~~~~~~~~A~~~~~~~ 199 (703)
.+..+.++..+.+.
T Consensus 156 --------~~~~~~a~~~~~~~ 169 (213)
T 1hh8_A 156 --------HSKIDKAMECVWKQ 169 (213)
T ss_dssp --------GGHHHHHHHHHHTT
T ss_pred --------cchHHHHHHHHHhc
Confidence 34555565555443
No 140
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=6.5e-10 Score=97.76 Aligned_cols=122 Identities=10% Similarity=-0.031 Sum_probs=108.6
Q ss_pred HHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 22 EEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 22 ~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
+....+|.+...|...+.... .+++++|...|+++++.+|++ ..+|..++..+... |++++|...|++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~ 90 (148)
T 2dba_A 19 RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL--------EDYDKAETEASK 90 (148)
T ss_dssp CCCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH--------ccHHHHHHHHHH
Confidence 445668899999999999888 999999999999999999998 88898888877654 889999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 153 (703)
+++..|+++.+|..++.++...|++++|...|+++++..|. +..+|..+..+..
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~ 144 (148)
T 2dba_A 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK--NKVFQEALRNISG 144 (148)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHC
T ss_pred HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999994 5777777777653
No 141
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.11 E-value=7.3e-10 Score=92.26 Aligned_cols=103 Identities=13% Similarity=0.292 Sum_probs=73.8
Q ss_pred cCCCChHHHHHHHHHhh-cCch------hHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHhcccCCCCchhHHH
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPK------AIINTIYERSLKELPGS--------YKLWYNYLKLRRKQVKGKVITDPSYED 90 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~------~~a~~~~e~al~~~P~~--------~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (703)
..|+|++.|..|+.... .|+. ++.+.+|+||+..-|-+ .-+|+.|+.+.. .++.++
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e---------i~D~d~ 78 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA---------IQEPDD 78 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH---------HHCGGG
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH---------hcCHHH
Confidence 47999999999999888 8888 99999999999999954 356666665521 145666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
|+.+|+.|++.+.+-..+|+.+++|+.++|+++.||+++.+|+-..|
T Consensus 79 aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 79 ARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp CHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 66666666666555566666666666666666666666666666665
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.11 E-value=7.3e-10 Score=94.65 Aligned_cols=108 Identities=7% Similarity=-0.074 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc
Q psy6461 61 PGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ 140 (703)
Q Consensus 61 P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 140 (703)
|.+...|...+...... |++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++.+| .
T Consensus 1 p~~a~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~ 70 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTK--------SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--N 70 (126)
T ss_dssp CHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred CchHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C
Confidence 34556777777666553 8999999999999999999999999999999999999999999999999999 4
Q ss_pred ccccHHHHHHHHHhcCChHHHHHHHHHHHhhC------CCCHHH
Q psy6461 141 HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF------PEDAED 178 (703)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~ 178 (703)
+...|..++.++...|++++|+..|+++++.+ |.+...
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~ 114 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHH
Confidence 58889999999999999999999999999999 766543
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.11 E-value=1.8e-09 Score=90.42 Aligned_cols=113 Identities=9% Similarity=0.019 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
....|..++.... .|++++|...|++++..+|.++..|..++...... |++++|...++++++..|+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--------GDYQKAYEDGCKTVDLKPDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHhCcccHHH
Confidence 3466777777776 88888888888888888888888888888776654 77888888888888888888888
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHH
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFV 152 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 152 (703)
|..++.++...|++++|...|+++++..|. ++.+|..++.+.
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 116 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEAN--NPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHhh
Confidence 888888888888888888888888888883 466666665553
No 144
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=5e-09 Score=98.65 Aligned_cols=115 Identities=13% Similarity=0.005 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcC
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYG 603 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~ 603 (703)
+++|...|+++++. .+ +..+..++.++.. .+++++|+..|+++.+..|.+.....+..+..++.. .++
T Consensus 69 ~~~A~~~~~~A~~~--g~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 69 YPQARQLAEKAVEA--GS--KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp HHHHHHHHHHHHHT--TC--HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHHHHHC--CC--HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 46666666666442 23 3456666666655 556666666666666665521111223333333333 456
Q ss_pred chHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhcc
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL-G-----EIDRARAIYAHCSQI 653 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g-----~~~~A~~~~~~a~~~ 653 (703)
+++|...|+++++. |.++. .+..++.++... | ++++|+.+|++|.+.
T Consensus 145 ~~~A~~~~~~A~~~-~~~~~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-SRTGY--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHHT-SCTTH--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHH--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 67777777777776 44444 566666666543 3 788888888888776
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.09 E-value=2.4e-09 Score=92.05 Aligned_cols=121 Identities=13% Similarity=0.036 Sum_probs=98.5
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCccccc
Q psy6461 389 GKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHD 468 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 468 (703)
+.....|..+|..+...|++++|+..|+++++..|.+. .+|..++.++...|++++|+..+++++...|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----- 83 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA----KLYSNRAACYTKLLEFQLALKDCEECIQLEPTF----- 83 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-----
Confidence 45677888888888888899999999999888888776 788888888888888999999998888888874
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 469 EAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
...|..++.++...|++ ++|+..|+++++.+|.
T Consensus 84 ------------~~~~~~la~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 84 ------------IKGYTRKAAALEAMKDY-----------------------------------TKAMDVYQKALDLDSS 116 (133)
T ss_dssp ------------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCGG
T ss_pred ------------hHHHHHHHHHHHHHhhH-----------------------------------HHHHHHHHHHHHhCCC
Confidence 67787877777766654 8888888888888888
Q ss_pred cchHHHHHHHHHHHHHcCC
Q psy6461 549 RYAKTLYLLYAKLEEEHGL 567 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~~g~ 567 (703)
+ ..++..++.++...|+
T Consensus 117 ~--~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 117 C--KEAADGYQRCMMAQYN 133 (133)
T ss_dssp G--THHHHHHHHHHHHHTC
T ss_pred c--hHHHHHHHHHHHHhcC
Confidence 7 4578888877766653
No 146
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.08 E-value=1e-09 Score=91.02 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=87.5
Q ss_pred CCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC-
Q psy6461 27 NPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK- 104 (703)
Q Consensus 27 ~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 104 (703)
+|.+...|..++.... .+++++|...|+++++.+|.+...|..++...... |++++|...|+++++..|.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--------ERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSCCT
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCccc
Confidence 6888888888888777 88888888888888888888888888888776653 7788888888888888888
Q ss_pred -CHHHHHHHHHHHHhc-cChHHHHHHHHHHHHhCCc
Q psy6461 105 -MPRIWLDYGRFLMDQ-HKITQTRHVFDRALRALPI 138 (703)
Q Consensus 105 -~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~ 138 (703)
++.+|..++.++... |++++|...|++++...|.
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 888888888888888 8888888888888888874
No 147
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.08 E-value=4.7e-09 Score=98.81 Aligned_cols=133 Identities=10% Similarity=-0.065 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
.++..|..+...|++++|+..|++++ +| ++ .+|..++.++...|++++|+..|++++..+|++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------- 70 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS----RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------- 70 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----------
Confidence 35677888889999999999999996 33 44 789999999999999999999999999999984
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc---
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY--- 550 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--- 550 (703)
...|..++.++...|++ ++|...|+++++..|.+.
T Consensus 71 -------~~~~~~lg~~~~~~~~~-----------------------------------~~A~~~~~~al~~~~~~~~~~ 108 (213)
T 1hh8_A 71 -------AVAYFQRGMLYYQTEKY-----------------------------------DLAIKDLKEALIQLRGNQLID 108 (213)
T ss_dssp -------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHTTTTCSEEE
T ss_pred -------hHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHHHHhCCCccHHH
Confidence 78888888888877765 999999999999888752
Q ss_pred -----------hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 551 -----------AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 551 -----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
...+|..+|.++...|++++|...|+++++..|.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 109 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 13689999999999999999999999999999976
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.06 E-value=9.1e-10 Score=93.20 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccH
Q psy6461 66 LWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVW 145 (703)
Q Consensus 66 ~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 145 (703)
.|...+...... |++++|...|+++++.+|+++.+|..+|.++...|++++|...|+++++.+| .+..+|
T Consensus 19 ~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~ 88 (121)
T 1hxi_A 19 NPMEEGLSMLKL--------ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVH 88 (121)
T ss_dssp CHHHHHHHHHHT--------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH
Confidence 355555554443 8999999999999999999999999999999999999999999999999999 457899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 146 PLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 146 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
..++.++...|++++|+..|+++++.+|++.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999999999864
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.06 E-value=1.2e-09 Score=98.26 Aligned_cols=112 Identities=8% Similarity=-0.006 Sum_probs=101.2
Q ss_pred hCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 59 ELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 59 ~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
..|.+...|...+..+... |++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++.+|
T Consensus 6 ~~~~~a~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 76 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMAR--------KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP- 76 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred hhhhhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-
Confidence 3456677788887776654 8999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
.+..+|..++.++...|++++|+..|+++++.+|++...++
T Consensus 77 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 77 -KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 45889999999999999999999999999999999987554
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.05 E-value=6.7e-10 Score=103.51 Aligned_cols=145 Identities=10% Similarity=-0.028 Sum_probs=112.4
Q ss_pred CCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHH
Q psy6461 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY----------------KLWYNYLKLRRK 76 (703)
Q Consensus 14 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~----------------~~w~~~~~~~~~ 76 (703)
.+....++......|.....|...+.... .+++++|...|+++++..|.++ .+|..++..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 100 (198)
T 2fbn_A 21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100 (198)
T ss_dssp -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555556666777888999998887 9999999999999999999987 788888777665
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcC
Q psy6461 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA 156 (703)
Q Consensus 77 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 156 (703)
. |++++|...|+++++..|+++.+|..++.++...|++++|...|+++++..| .+..++..+..++...+
T Consensus 101 ~--------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 101 N--------KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKLK 170 (198)
T ss_dssp T--------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHH
T ss_pred h--------cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHH
Confidence 4 7899999999999999999999999999999999999999999999999988 45777877777776666
Q ss_pred ChHHHH-HHHHHH
Q psy6461 157 VPETAV-RVFRRY 168 (703)
Q Consensus 157 ~~~~A~-~~~~~~ 168 (703)
+..++. ..|.+.
T Consensus 171 ~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 171 EARKKDKLTFGGM 183 (198)
T ss_dssp HHHC---------
T ss_pred HHHHHHHHHHHHH
Confidence 555544 334433
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.04 E-value=3.8e-09 Score=90.30 Aligned_cols=120 Identities=17% Similarity=0.074 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....+..+|..+...|++++|+..|++++...|.++ .+|..++.++...|++++|+..+.+++...|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------- 79 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA----VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------- 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-------
Confidence 456777888888888888888888888888888776 778888888888888888888888888888774
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
...|..++.++...|++ ++|...|+++++..|++
T Consensus 80 ----------~~~~~~~~~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~p~~- 113 (131)
T 2vyi_A 80 ----------SKAYGRMGLALSSLNKH-----------------------------------VEAVAYYKKALELDPDN- 113 (131)
T ss_dssp ----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHSTTC-
T ss_pred ----------HHHHHHHHHHHHHhCCH-----------------------------------HHHHHHHHHHHhcCccc-
Confidence 66777777777666554 88888888888888877
Q ss_pred hHHHHHHHHHHHHHcCCh
Q psy6461 551 AKTLYLLYAKLEEEHGLA 568 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~ 568 (703)
...+..++.++...|++
T Consensus 114 -~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 114 -ETYKSNLKIAELKLREA 130 (131)
T ss_dssp -HHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHHHHhcC
Confidence 56788888877777664
No 152
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=2.7e-08 Score=97.12 Aligned_cols=192 Identities=11% Similarity=-0.017 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC--CCcchHHHHHHHHHHHHHHcCCHHH
Q psy6461 371 IIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY--TKVEDLATVWCEWAELELRAGQEEA 448 (703)
Q Consensus 371 a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (703)
++..|++.+..- + .....+..+|.++...|++++|+.++.+++..+| .+. +++...+.++++.|+.+.
T Consensus 85 a~~~l~~l~~~~-~-----~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l----ea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDK-Q-----NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT----ELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTS-C-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH----HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcC-C-----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH----HHHHHHHHHHHHCCCHHH
Confidence 567777766531 1 2244567889999999999999999999998876 444 889999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhC
Q psy6461 449 ALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYG 528 (703)
Q Consensus 449 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~ 528 (703)
|++.++++.+.+|+.+. ....+...++. .|..... +
T Consensus 155 A~k~l~~~~~~~~d~~~-------------~~d~~l~~Lae-------------------------a~v~l~~------g 190 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVS-------------GDNEMILNLAE-------------------------SYIKFAT------N 190 (310)
T ss_dssp HHHHHHHHHHHSCHHHH-------------HHHHHHHHHHH-------------------------HHHHHHH------T
T ss_pred HHHHHHHHHhcCccccc-------------cchHHHHHHHH-------------------------HHHHHHh------C
Confidence 99999999998882000 00112222211 1111110 2
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc----------CcchHHHHHHHHHHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAV----------LPEEMFEMFNIYIKKA 598 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------p~~~~~~~~~~~~~~~ 598 (703)
.+++.+|..+|+++....|+..++.+.+. +++..|++++|.+.++++++.. |++ +......+.+.
T Consensus 191 ~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~--~~~LaN~i~l~ 265 (310)
T 3mv2_B 191 KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK--PTFLANQITLA 265 (310)
T ss_dssp CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH--HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC--HHHHHHHHHHH
Confidence 33569999999999998887211223333 7889999999999999877763 656 34444555555
Q ss_pred HHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 599 AEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
...|+ .|..+++++.+..|++|.
T Consensus 266 ~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 266 LMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHhCh--HHHHHHHHHHHhCCCChH
Confidence 55665 889999999999999875
No 153
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=1.1e-08 Score=96.40 Aligned_cols=182 Identities=12% Similarity=0.005 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC----C
Q psy6461 370 DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG----Q 445 (703)
Q Consensus 370 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~ 445 (703)
+|...|+++.+. ..+.++..+|.++...+++++|+..|+++++. .++ ..++.++.++.. + +
T Consensus 4 eA~~~~~~aa~~--------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~----~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDG----DALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCH----HHHHHHHHHTTS-STTSCC
T ss_pred hHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH----HHHHHHHHHHHc-CCCCCC
Confidence 577888888875 35778999999999999999999999999875 444 788999999877 6 8
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|..+|+++.... ++..++.++.++..-..
T Consensus 69 ~~~A~~~~~~A~~~g-------------------~~~a~~~Lg~~y~~g~g----------------------------- 100 (212)
T 3rjv_A 69 YPQARQLAEKAVEAG-------------------SKSGEIVLARVLVNRQA----------------------------- 100 (212)
T ss_dssp HHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHTCGGG-----------------------------
T ss_pred HHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHcCCC-----------------------------
Confidence 999999999997653 26677777777654111
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH-
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE- 600 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~- 600 (703)
..+++++|...|+++++..|.+..+..+..++.++.. .+++++|+..|+++... |.+...... ...++..
T Consensus 101 --~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~--Lg~~y~~g 175 (212)
T 3rjv_A 101 --GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW--AGMMFQQG 175 (212)
T ss_dssp --SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH--HHHHHHHC
T ss_pred --CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH--HHHHHHcC
Confidence 0245699999999999998841115689999999998 88999999999999988 333323222 3333332
Q ss_pred hc-----CchHHHHHHHHHHHhCC
Q psy6461 601 IY-----GIPKTRQIYERAIESLP 619 (703)
Q Consensus 601 ~~-----~~~~A~~~~~~al~~~p 619 (703)
.+ ++++|...|+++++...
T Consensus 176 ~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 176 EKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp BTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC
Confidence 23 78999999999998854
No 154
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=3.3e-08 Score=96.47 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=139.9
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHH
Q psy6461 411 ARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADL 490 (703)
Q Consensus 411 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (703)
|+..+++.+...+.+. ..+..++.++...|++++|++++.+++...|.. .+.......+++
T Consensus 85 a~~~l~~l~~~~~~~~----~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~---------------~~lea~~l~vqi 145 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP----YELYLLATAQAILGDLDKSLETCVEGIDNDEAE---------------GTTELLLLAIEV 145 (310)
T ss_dssp CCHHHHHTTTTSCCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST---------------THHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc---------------CcHHHHHHHHHH
Confidence 7889999887754443 456788999999999999999999999988721 036777777777
Q ss_pred HHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC-----cchHHHHHHHHHHHHHc
Q psy6461 491 EESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP-----RYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 491 ~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~a~~~~~~ 565 (703)
+...|+. +.|++.++++.+.+|+ + ...+.+.-+.+....
T Consensus 146 ~L~~~r~-----------------------------------d~A~k~l~~~~~~~~d~~~~~d-~~l~~Laea~v~l~~ 189 (310)
T 3mv2_B 146 ALLNNNV-----------------------------------STASTIFDNYTNAIEDTVSGDN-EMILNLAESYIKFAT 189 (310)
T ss_dssp HHHTTCH-----------------------------------HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHCCCH-----------------------------------HHHHHHHHHHHhcCccccccch-HHHHHHHHHHHHHHh
Confidence 7776654 9999999999999993 3 123344334345555
Q ss_pred C--ChHHHHHHHHHHhhccCcc-hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh----------CCCcchHHHHHHHHH
Q psy6461 566 G--LARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIES----------LPEEPTRQMCLKFAE 632 (703)
Q Consensus 566 g--~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~~~~a~ 632 (703)
| ++.+|..+|+.+.+.+|+. ....++. ...+.|++++|...++++++. .|+++. +....+.
T Consensus 190 g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~--~LaN~i~ 263 (310)
T 3mv2_B 190 NKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT--FLANQIT 263 (310)
T ss_dssp TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH--HHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH--HHHHHHH
Confidence 5 8999999999999999862 2233444 566789999999999988876 377765 6777777
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 633 METKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 633 ~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+....|+ +|..+++++.+..|.+
T Consensus 264 l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHhCh--HHHHHHHHHHHhCCCC
Confidence 8888897 8999999999985443
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.00 E-value=5.9e-10 Score=103.86 Aligned_cols=127 Identities=10% Similarity=-0.035 Sum_probs=106.0
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH----------------
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP---------------- 106 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------- 106 (703)
.++++++...++......+.....|...+...... |++++|...|++++...|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKK--------NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 45666666666666666666677777777766553 899999999999999999988
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
.+|..++.++...|++++|...|+++++..| ....+|..++.++...|++++|+..|+++++.+|++...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 159 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 159 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence 8999999999999999999999999999999 4578899999999999999999999999999999987544
No 156
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=1.3e-08 Score=110.49 Aligned_cols=180 Identities=10% Similarity=0.017 Sum_probs=153.3
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ----------EEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
....++|...+++++..+|.+. .+|..-+.+....|+ +++++..++++++.+|++
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~----taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~----------- 106 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----------- 106 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----------
T ss_pred CCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----------
Confidence 3445788999999999999997 999999998888777 999999999999999995
Q ss_pred HHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHH
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTL 554 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 554 (703)
..+|...+.+....+.. +++++.+.++++++.+|.+ ..+
T Consensus 107 ------y~aW~hR~w~l~~l~~~---------------------------------~~~~el~~~~k~l~~d~~N--~~a 145 (567)
T 1dce_A 107 ------YGTWHHRCWLLSRLPEP---------------------------------NWARELELCARFLEADERN--FHC 145 (567)
T ss_dssp ------HHHHHHHHHHHHTCSSC---------------------------------CHHHHHHHHHHHHHHCTTC--HHH
T ss_pred ------HHHHHHHHHHHHHcccc---------------------------------cHHHHHHHHHHHHhhcccc--ccH
Confidence 89999988777766521 2489999999999999999 569
Q ss_pred HHHHHHHHHHcC-ChHHHHHHHHHHhhccCcchHHHHHHHHHHHHH------------HhcCchHHHHHHHHHHHhCCCc
Q psy6461 555 YLLYAKLEEEHG-LARHAMAVYERATGAVLPEEMFEMFNIYIKKAA------------EIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 555 ~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~------------~~~~~~~A~~~~~~al~~~p~~ 621 (703)
|..-+.+....| .++++++.++++++.+|.+.+.+.+..++.... ..+.++++.+.+.+|+..+|++
T Consensus 146 W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999 899999999999999999977766666665442 1245789999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCHHH
Q psy6461 622 PTRQMCLKFAEMETKLGEIDR 642 (703)
Q Consensus 622 ~~~~~~~~~a~~~~~~g~~~~ 642 (703)
.. +|..+..++.+.|..++
T Consensus 226 ~s--aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 226 QS--AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SH--HHHHHHHHHSCCCCCSC
T ss_pred cc--HHHHHHHHHhcCCCccc
Confidence 87 89999998888777554
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.00 E-value=1.3e-09 Score=115.83 Aligned_cols=144 Identities=10% Similarity=0.011 Sum_probs=116.8
Q ss_pred CCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhc
Q psy6461 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---------------YKLWYNYLKLRRKQV 78 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---------------~~~w~~~~~~~~~~~ 78 (703)
+....|+..+..+|.....|...+..+. .+++++|...|+++++.+|.+ ..+|..++..+...
T Consensus 252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~- 330 (457)
T 1kt0_A 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL- 330 (457)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 4445677888889999999999999888 999999999999999999998 57888888776654
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
|++++|+..|+++++.+|+++.+|..++.++...|++++|+..|+++++..| .+..+|..++.++...++.
T Consensus 331 -------g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 331 -------REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp -------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHH
T ss_pred -------cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH
Confidence 7888899999999998898888888889988888999999999999998888 4577888888887777766
Q ss_pred HHHH-HHHHHH
Q psy6461 159 ETAV-RVFRRY 168 (703)
Q Consensus 159 ~~A~-~~~~~~ 168 (703)
++|. ..|++.
T Consensus 402 ~~a~~~~~~~~ 412 (457)
T 1kt0_A 402 NERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 6554 344443
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.00 E-value=4.5e-09 Score=90.99 Aligned_cols=107 Identities=11% Similarity=-0.012 Sum_probs=97.3
Q ss_pred hhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 58 KELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 58 ~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
...|.+...|...+...... |++++|...|++++...|+++.+|..++.++...|++++|...|+++++..|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 74 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVG--------RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCccccHHHHHHHHHHHHHh--------CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 45788899999998887654 8999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q psy6461 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174 (703)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 174 (703)
.+..+|..++.++...|++++|+..|+++++.+|+
T Consensus 75 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 --QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 45889999999999999999999999999999887
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.99 E-value=2.3e-09 Score=88.81 Aligned_cols=109 Identities=12% Similarity=0.164 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc
Q psy6461 60 LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT 139 (703)
Q Consensus 60 ~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 139 (703)
+|.+...|..++..... .|++++|...|+++++..|.++.+|..++.++...|++++|...|+++++..|..
T Consensus 2 ~p~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYD--------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHS--------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred CCCcHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 58888888888877654 3889999999999999999999999999999999999999999999999999941
Q ss_pred cccccHHHHHHHHHhc-CChHHHHHHHHHHHhhCCCCH
Q psy6461 140 QHHRVWPLYLSFVKSH-AVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 140 ~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~ 176 (703)
....+|..++.++... |++++|++.+++++..+|.+.
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 1578899999999999 999999999999999998763
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.99 E-value=3.2e-09 Score=90.70 Aligned_cols=101 Identities=9% Similarity=0.099 Sum_probs=90.4
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH--
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP-- 106 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 106 (703)
...+|..++..+. +|++++|+..|+++++.+|.++.+|..++..+... |++++|+..|+++++..|+++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE--------KKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh--------hhHHHHHHHHHHHHHhCcccchh
Confidence 4567888888777 99999999999999999999999999999887765 899999999999999988764
Q ss_pred -----HHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 107 -----RIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 107 -----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
.++..+|.++...|++++|...|+++|...|+
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 47788889999999999999999999998884
No 161
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.98 E-value=5.7e-10 Score=113.44 Aligned_cols=147 Identities=11% Similarity=0.068 Sum_probs=83.4
Q ss_pred hHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHhcccC
Q psy6461 20 YEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY-----------------KLWYNYLKLRRKQVKGK 81 (703)
Q Consensus 20 ~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~-----------------~~w~~~~~~~~~~~~~~ 81 (703)
++..++..|.....|...+..+. .+++++|...|+++++..|.+. .+|..++..+...
T Consensus 168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~---- 243 (338)
T 2if4_A 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL---- 243 (338)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT----
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 33344455667788999998888 9999999999999999999877 3666666665432
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH-hcCChHH
Q psy6461 82 VITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK-SHAVPET 160 (703)
Q Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~~ 160 (703)
|++++|...|+++++.+|+++.+|..++.++...|++++|+..|+++++..|. +..++..+..+.. ..+..+.
T Consensus 244 ----g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 244 ----KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp ----TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888878877778888888887788888888888888777773 4566666665532 3445566
Q ss_pred HHHHHHHHHhhCCCCH
Q psy6461 161 AVRVFRRYLKLFPEDA 176 (703)
Q Consensus 161 A~~~~~~~l~~~p~~~ 176 (703)
+.+.|++++...|.+.
T Consensus 318 a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHhhCCCCCCC
Confidence 7777777777777654
No 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.96 E-value=1.8e-08 Score=85.14 Aligned_cols=118 Identities=14% Similarity=0.288 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....|..+|..+...|++++|+..|+++++..|.++ .++..++.++...|++++|...+++++...|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 76 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------- 76 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------
Confidence 356788889999999999999999999999888776 888999999999999999999999999988874
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
...|..++.++...|++ ++|...|+++++..|++
T Consensus 77 ----------~~~~~~la~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~- 110 (125)
T 1na0_A 77 ----------AEAWYNLGNAYYKQGDY-----------------------------------DEAIEYYQKALELDPNN- 110 (125)
T ss_dssp ----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTTC-
T ss_pred ----------HHHHHHHHHHHHHhcCH-----------------------------------HHHHHHHHHHHHhCCCc-
Confidence 67777777777766654 89999999999999988
Q ss_pred hHHHHHHHHHHHHHcC
Q psy6461 551 AKTLYLLYAKLEEEHG 566 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g 566 (703)
+.++..++.++...|
T Consensus 111 -~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 111 -AEAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcc
Confidence 567878877765543
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.96 E-value=1.4e-08 Score=84.82 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
...|..+|..+...|++++|+..|++++...|.++ .+|..++.++...|++++|...+++++...|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-------- 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--------
Confidence 45678888888889999999999999998888876 888888988888999999999999999888874
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
...|..++.++...|++ ++|+..|+++++..|++
T Consensus 72 ---------~~~~~~~a~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~-- 105 (118)
T 1elw_A 72 ---------GKGYSRKAAALEFLNRF-----------------------------------EEAKRTYEEGLKHEANN-- 105 (118)
T ss_dssp ---------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHTTCTTC--
T ss_pred ---------HHHHHHHHHHHHHHhhH-----------------------------------HHHHHHHHHHHHcCCCC--
Confidence 67788887777776654 88999999999988887
Q ss_pred HHHHHHHHHHH
Q psy6461 552 KTLYLLYAKLE 562 (703)
Q Consensus 552 ~~~~~~~a~~~ 562 (703)
+.++..++.+.
T Consensus 106 ~~~~~~l~~~~ 116 (118)
T 1elw_A 106 PQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 56777776654
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.96 E-value=2.7e-09 Score=91.21 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLS 184 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 184 (703)
....|..+|..+..+|++++|...|++|++.+| .+..+|..++.++...|++++|+..|+++++++|++...+.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---- 80 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK---- 80 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH----
Confidence 446677889999999999999999999999999 45788888999999999999999999999988776531100
Q ss_pred hcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHH
Q psy6461 185 SIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIR 264 (703)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (703)
....++..+|..+..
T Consensus 81 -----------------------------------------------------------------~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 81 -----------------------------------------------------------------LIAKAMSRAGNAFQK 95 (127)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Confidence 012578889999999
Q ss_pred hCchHHHHHHHHHHHhhcCCc
Q psy6461 265 SGLFERARDIYEEAIQTVTTV 285 (703)
Q Consensus 265 ~~~~~~A~~~~~~~l~~~~~~ 285 (703)
.|++++|+..|++++...|+.
T Consensus 96 ~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 96 QNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp TTCHHHHHHHHHHHHHHSCCH
T ss_pred cCCHHHHHHHHHHHHhhCcCH
Confidence 999999999999999987764
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.96 E-value=3.2e-10 Score=120.97 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=101.4
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
..|..++..+. .|++++|...|+++++.+|.+...|..++..+... |++++|...|+++++.+|+++.+|.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~l~p~~~~~~~ 78 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--------ECYGYALGDATRAIELDKKYIKGYY 78 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34444555555 78999999999999999999999999998887664 8899999999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHH--HHhcCChHHHHHHHH
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSF--VKSHAVPETAVRVFR 166 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~ 166 (703)
.++.++..+|++++|...|+++++..|. ...+|..++.+ +...|++++|++.++
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999994 46677777666 667788888888888
No 166
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.96 E-value=5.9e-09 Score=113.06 Aligned_cols=153 Identities=13% Similarity=0.063 Sum_probs=132.7
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCc----------hhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCch
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAP----------KAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDP 86 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~----------~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~ 86 (703)
..++++|+.||.++.+|..-..... .++ ++++...++++++.+|.+..+|....-.... .+
T Consensus 50 ~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~--------l~ 121 (567)
T 1dce_A 50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR--------LP 121 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--------CS
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cc
Confidence 4678899999999999998887776 555 8999999999999999999999887655432 14
Q ss_pred --hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhc--------
Q psy6461 87 --SYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH-KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH-------- 155 (703)
Q Consensus 87 --~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-------- 155 (703)
+++++...++++++.+|++..+|...+.+....| .++++...++++++.+| .+..+|...+.+....
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p--~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC--CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--CCccHHHHHHHHHHhhcccccccc
Confidence 5799999999999999999999999999999999 89999999999999999 4588998887776553
Q ss_pred ------CChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 156 ------AVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 156 ------~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
+.++++++.+.+++..+|++..+|.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 3458899999999999999998764
No 167
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.94 E-value=4.8e-09 Score=90.88 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=74.3
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc--CCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG--KVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH 120 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 120 (703)
.+.+++|+..|+++++.+|++.+.|..+...+.....- .....+.+++|+..|++|++++|+++.+|..+|.++.+.|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 46689999999999999999999999999876654100 0000123679999999999999999999999999998876
Q ss_pred -----------ChHHHHHHHHHHHHhCC
Q psy6461 121 -----------KITQTRHVFDRALRALP 137 (703)
Q Consensus 121 -----------~~~~A~~~~~~al~~~p 137 (703)
++++|...|++|++.+|
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 56666666666666666
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.93 E-value=6.3e-09 Score=90.39 Aligned_cols=112 Identities=7% Similarity=0.031 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPG-------SYK-----LWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~-------~~~-----~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
....|...+.... .|++++|...|+++|+.+|. +.. .|...+..+... |++++|...|+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L--------gr~~eAl~~~~ 81 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL--------RSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence 3466777887777 99999999999999999999 554 999988877654 89999999999
Q ss_pred HHHHh-------cCCCHHHH----HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHH
Q psy6461 97 RSLVF-------MHKMPRIW----LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSF 151 (703)
Q Consensus 97 ~al~~-------~p~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 151 (703)
+||.. +|+++.+| ...|.++...|++++|...|+++++..|. ...+...+...
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~--d~~~~~~~~~~ 145 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE--RKGETPGKERM 145 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--CCSCCTTHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHH
Confidence 99999 99999999 99999999999999999999999999994 45555555444
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.93 E-value=1.5e-09 Score=115.36 Aligned_cols=124 Identities=12% Similarity=0.034 Sum_probs=110.5
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---------------HH
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---------------PR 107 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~ 107 (703)
.+++++|...|+++++..|.....|...+..+... |++++|...|++|++.+|.+ ..
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~--------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG--------GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 45678888999999999999999999999887664 89999999999999999998 69
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 108 IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 108 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
+|..++.++...|++++|...|+++|+.+| .+..+|..++.++...|++++|+..|+++++.+|++.
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999 4588899999999999999999999999999998875
No 170
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.91 E-value=1.1e-07 Score=94.60 Aligned_cols=185 Identities=12% Similarity=-0.015 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVED--LATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
...+...+..+...|++++|...++++++..+..... ....+..++.++...|++++|...+.+++...+...+...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~- 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ- 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH-
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH-
Confidence 3455667788889999999999999999887654321 1234556777788889999999999999987654321110
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH---HhC
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCL---EAC 546 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al---~~~ 546 (703)
...++...+.++...|++ ++|...|++++ +..
T Consensus 154 ----------~~~~~~~lg~~y~~~~~~-----------------------------------~~A~~~~~kal~~~~~~ 188 (293)
T 2qfc_A 154 ----------NLYIENAIANIYAENGYL-----------------------------------KKGIDLFEQILKQLEAL 188 (293)
T ss_dssp ----------HHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHHHHS
T ss_pred ----------HHHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHHHHhc
Confidence 134666667676666654 99999999999 456
Q ss_pred CCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH
Q psy6461 547 PPRY--AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 547 p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 624 (703)
|++. ...++..+|.++...|++++|...++++++..+.... + ....
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-------------------------------~-~~~~ 236 (293)
T 2qfc_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-------------------------------M-ALIG 236 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-------------------------------C-SSHH
T ss_pred CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------------------------------H-HHHH
Confidence 6542 1258899999999999999999999999876532100 0 0012
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhccc
Q psy6461 625 QMCLKFAEMETKLGEIDRA-RAIYAHCSQIC 654 (703)
Q Consensus 625 ~~~~~~a~~~~~~g~~~~A-~~~~~~a~~~~ 654 (703)
.++...+.++.+.|++++| ...|++|+.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 2555666666666766666 55666666553
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.91 E-value=2.1e-08 Score=85.68 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=62.8
Q ss_pred HHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---H
Q psy6461 34 WLRYIEHKK-NAPKAIINTIYERSLKELPGSY---KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---P 106 (703)
Q Consensus 34 w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~ 106 (703)
+...+.... .|++++|...|+++++.+|++. ..|..++...... |++++|...|+++++..|++ +
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~~~~~~p~~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT--------RNFQLAEAQFRDLVSRYPTHDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHCCCCcccH
Confidence 444555444 6667777777777777666666 5666666555443 66666777777776666666 6
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
.++..++.++...|++++|...|+++++..|.
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 66666666666666777777777766666663
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.91 E-value=9.5e-09 Score=89.28 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHhccChHHHHHHHHHH
Q psy6461 65 KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK-------MPR-----IWLDYGRFLMDQHKITQTRHVFDRA 132 (703)
Q Consensus 65 ~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~a 132 (703)
..|...+...... |++++|...|++|++.+|+ +.. +|.+.+.++...|++++|...|+++
T Consensus 12 ~~~~~~G~~l~~~--------g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 12 YLALSDAQRQLVA--------GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--------CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555554443 8999999999999999999 444 9999999999999999999999999
Q ss_pred HHh-------CCcccccccH----HHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 133 LRA-------LPITQHHRVW----PLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 133 l~~-------~p~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
|+. +| ....+| ...+..+...|++++|+..|+++++++|++.
T Consensus 84 L~l~n~~~e~~p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 84 LHYFNRRGELNQ--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHCCTTS--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhccccCCC--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 999 99 468899 8889999999999999999999999999874
No 173
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=1.3e-07 Score=93.99 Aligned_cols=185 Identities=6% Similarity=-0.025 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCC
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWP 510 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~ 510 (703)
..+...+..+...|++++|...+.+++...+...... .....+...+.++..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~----------------- 127 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-----------QFLQWQYYVAAYVLK----------------- 127 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH-----------HHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH-----------HHHHHHHHHHHHHhc-----------------
Confidence 4455667777889999999999999998877530000 001111122222222
Q ss_pred chHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 511 YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 511 ~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
.+++++|...|+++++..+... ...++..+|.++...|++++|...|+++++...
T Consensus 128 ------------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~--- 186 (293)
T 2qfc_A 128 ------------------KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE--- 186 (293)
T ss_dssp ------------------SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---
T ss_pred ------------------CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---
Confidence 3456889999999987654431 124677788888888888888888887774321
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC----CCh
Q psy6461 587 MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR----VTA 660 (703)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~ 660 (703)
..|+++ ...++..++.++...|++++|...+++|+++.+.. ...
T Consensus 187 ------------------------------~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 187 ------------------------------ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp ------------------------------HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred ------------------------------hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 112211 11367788888999999999999999998874211 127
Q ss_pred HhHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhh
Q psy6461 661 GFWAAWKSFEITHGNEDTM-REMLRIKRSVQAQYN 694 (703)
Q Consensus 661 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 694 (703)
.++...+......|+.++| ...++++..+....+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 7889999999999999999 777877777666554
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.89 E-value=2e-08 Score=89.98 Aligned_cols=101 Identities=12% Similarity=0.039 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHhcccCCCCchhHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKE------------------LPGSYKLWYNYLKLRRKQVKGKVITDPSYED 90 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~------------------~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (703)
....|...+..+. .|++++|...|+++++. .|.+..+|..++..+... |++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--------~~~~~ 81 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI--------GDLHE 81 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH--------TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--------CcHHH
Confidence 4567888888777 99999999999999998 555556666666555443 56666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
|...++++++.+|+++.+|..+|.++...|++++|...|+++++.+|.
T Consensus 82 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 82 AEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 666666666666666666666666666666666666666666666663
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2.7e-08 Score=87.18 Aligned_cols=113 Identities=9% Similarity=-0.050 Sum_probs=101.0
Q ss_pred hhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHH
Q psy6461 58 KELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQHKITQTRHVFDRALR 134 (703)
Q Consensus 58 ~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 134 (703)
...|.+...|...+...... |++++|...|+++++..|++ +.+|..++.++...|++++|...|+++++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKC--------GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTT--------TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 45678889998888776543 89999999999999999987 89999999999999999999999999999
Q ss_pred hCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 135 ~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
..|. +..+|..++.++...|++++|+..|+++++.+|++...+.
T Consensus 94 ~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 94 KDGG--DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HTSC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hCcc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 9994 5788999999999999999999999999999999876543
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.88 E-value=1.4e-08 Score=86.81 Aligned_cols=115 Identities=10% Similarity=0.062 Sum_probs=100.8
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC-
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM- 105 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 105 (703)
|.....|..++.... .|++++|...|+++++.+|.+..+|..++..+... |++++|...|++++...|.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--------GDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHhhccccc
Confidence 345678889998888 99999999999999999999999999999887665 89999999999999998877
Q ss_pred ------HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH
Q psy6461 106 ------PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153 (703)
Q Consensus 106 ------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 153 (703)
+.+|..++.++...|++++|...|++++...|. +..+..+..+..
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~ 123 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT---PDVLKKCQQAEK 123 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence 899999999999999999999999999998883 455666655543
No 177
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.88 E-value=6.4e-09 Score=90.13 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh----------HHHHHHHHHHHHhCCcccccccHHHHHHHHHhc
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI----------TQTRHVFDRALRALPITQHHRVWPLYLSFVKSH 155 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 155 (703)
+.+++|+..|+++++.+|+++.+|+.++.++...+++ ++|+..|++||+++| ....+|..++..+...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999998764 599999999999999 5688899999888876
Q ss_pred C-----------ChHHHHHHHHHHHhhCCCCHH
Q psy6461 156 A-----------VPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 156 ~-----------~~~~A~~~~~~~l~~~p~~~~ 177 (703)
| ++++|++.|+++++++|++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 4 789999999999999999863
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.85 E-value=4.4e-09 Score=88.38 Aligned_cols=87 Identities=9% Similarity=0.080 Sum_probs=56.2
Q ss_pred CchhHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q psy6461 44 APKAIINTIYERSLKE---LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH 120 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 120 (703)
|++++|+..|+++++. +|.+...|..++..+... |++++|...|+++++.+|+++.++..++.++...|
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--------GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence 5566666677777666 466666666666665543 66666777777777666766666666666666667
Q ss_pred ChHHHHHHHHHHHHhCCc
Q psy6461 121 KITQTRHVFDRALRALPI 138 (703)
Q Consensus 121 ~~~~A~~~~~~al~~~p~ 138 (703)
++++|...|++++...|.
T Consensus 76 ~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSD 93 (117)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 777777777776666663
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.80 E-value=6.2e-08 Score=103.23 Aligned_cols=160 Identities=15% Similarity=0.098 Sum_probs=120.5
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.+++++|...|+++++.+|++ ..+|..+|.++...|++++|+..|+++++..|.+ ...+......+...|++++|.
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHH
Confidence 577899999999999999998 6799999999999999999999999999999987 456666777777889999999
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHhcccCCCC---------ChHhHHHH
Q psy6461 609 QIYERAIESLPEEPTRQMCLKFAEM--ETKLGEIDRARAIYA-----------HCSQICDPRV---------TAGFWAAW 666 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~--~~~~g~~~~A~~~~~-----------~a~~~~~~~~---------~~~~~~~~ 666 (703)
..|+++++..|+++. .+..++.+ +.+.|++++|+..++ ++++..+... .......+
T Consensus 95 ~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~l 172 (477)
T 1wao_1 95 RDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKEL 172 (477)
T ss_dssp HHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHHHH
Confidence 999999999999887 56666655 788899999999999 7776643211 12334444
Q ss_pred HHHHHHcCC--HHHHHHHHHHHHHHHHHhh
Q psy6461 667 KSFEITHGN--EDTMREMLRIKRSVQAQYN 694 (703)
Q Consensus 667 ~~~~~~~g~--~~~~~~~~~~~~~~~~~~~ 694 (703)
.......+. .+.+..++..++.+-.+.+
T Consensus 173 ie~l~~~~~l~e~~v~~L~~~a~eil~~e~ 202 (477)
T 1wao_1 173 MQWYKDQKKLHRKCAYQILVQVKEVLSKLS 202 (477)
T ss_dssp HHHHHTCCCCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHccCC
Confidence 444444443 5555666777777554443
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.79 E-value=5.6e-09 Score=87.72 Aligned_cols=91 Identities=11% Similarity=0.185 Sum_probs=82.5
Q ss_pred chhHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHH
Q psy6461 85 DPSYEDVNNTFERSLVF---MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETA 161 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A 161 (703)
.|++++|+..|+++++. +|+++.+|..++.++...|++++|...|+++++..|. ++.++..++.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCHHHH
Confidence 37889999999999999 6999999999999999999999999999999999994 588999999999999999999
Q ss_pred HHHHHHHHhhCCCCHH
Q psy6461 162 VRVFRRYLKLFPEDAE 177 (703)
Q Consensus 162 ~~~~~~~l~~~p~~~~ 177 (703)
+..|++++...|++..
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 9999999999999864
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.79 E-value=4.7e-08 Score=87.48 Aligned_cols=103 Identities=8% Similarity=0.043 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHhccChHHHH
Q psy6461 65 KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF------------------MHKMPRIWLDYGRFLMDQHKITQTR 126 (703)
Q Consensus 65 ~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~~~~~~A~ 126 (703)
..|...+..... .|++++|...|.+++.. .|.++.+|..++.++...|++++|.
T Consensus 12 ~~~~~~G~~~~~--------~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 12 EALRQKGNELFV--------QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 445555555444 38999999999999999 7778899999999999999999999
Q ss_pred HHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 127 HVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 127 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
..++++|+.+| .+..+|..++.++...|++++|+..|+++++.+|++..
T Consensus 84 ~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 132 (162)
T 3rkv_A 84 ETSSEVLKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132 (162)
T ss_dssp HHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH
Confidence 99999999999 56889999999999999999999999999999999874
No 182
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.79 E-value=1.9e-08 Score=84.16 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHH
Q psy6461 47 AIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTR 126 (703)
Q Consensus 47 ~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~ 126 (703)
+.|...|+++++.+|.+...|..++..+... |++++|...|+++++..|+++.+|..++.++...|++++|+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEH--------EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 4577788888888888888888888776653 77888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCc
Q psy6461 127 HVFDRALRALPI 138 (703)
Q Consensus 127 ~~~~~al~~~p~ 138 (703)
..|+++++..|.
T Consensus 74 ~~~~~al~~~~~ 85 (115)
T 2kat_A 74 QAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 888888887774
No 183
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=3.1e-07 Score=91.17 Aligned_cols=170 Identities=11% Similarity=-0.008 Sum_probs=125.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHH-----HH-HHHHHHHhcCChhHHHhHhhc
Q psy6461 433 WCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL-----WS-LYADLEESFGTFKAYEKGIAL 506 (703)
Q Consensus 433 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~e~al~~ 506 (703)
+...+..+...|++++|...+++++...+.. +.. |. ..+.++.
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~l~~~~~-------------- 126 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-----------------PEFQQFLQWQYYVAAYVL-------------- 126 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC-----------------HHHHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCC-----------------hHHHHHHHHHHHHHHHHH--------------
Confidence 3344566778999999999999999877653 111 11 1122222
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch----HHHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q psy6461 507 FKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA----KTLYLLYAKLEEEHGLARHAMAVYERATGAV 582 (703)
Q Consensus 507 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 582 (703)
..+++++|...|++++...+.... ..++..+|.++...|++++|...|+++++..
T Consensus 127 ---------------------~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 127 ---------------------KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp ---------------------TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234669999999999996544321 2478999999999999999999999999532
Q ss_pred C---cc--hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCC-HHHHHHHHHHHhc
Q psy6461 583 L---PE--EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP----TRQMCLKFAEMETKLGE-IDRARAIYAHCSQ 652 (703)
Q Consensus 583 p---~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~-~~~A~~~~~~a~~ 652 (703)
. .+ ....++...+..+...|++++|...++++++..++.. ...++...+.++.+.|+ +++|...|++|++
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1 21 2344677777788889999999999999998764321 24588899999999995 6999999999988
Q ss_pred cc
Q psy6461 653 IC 654 (703)
Q Consensus 653 ~~ 654 (703)
+.
T Consensus 266 i~ 267 (293)
T 3u3w_A 266 FF 267 (293)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 184
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=2.2e-07 Score=92.33 Aligned_cols=176 Identities=10% Similarity=-0.050 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL--ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
...+..+...|++++|...++++++..+..+... ...+..++.++...+++++|+..|++++...+...+...
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~----- 153 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ----- 153 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH-----
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH-----
Confidence 3345667789999999999999999876665221 123345777777888999999999999986544211100
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh---CCCc-
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA---CPPR- 549 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~- 549 (703)
...++...+.++...|++ ++|...|+++++. .|.+
T Consensus 154 ------~~~~~~~lg~~y~~~g~~-----------------------------------~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 154 ------NLYIENAIANIYAENGYL-----------------------------------KKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp ------HHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHHHHSSCCH
T ss_pred ------HHHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHHHHhcccch
Confidence 134566666666666554 8899999999863 2222
Q ss_pred -chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc----hHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHh
Q psy6461 550 -YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE----EMFEMFNIYIKKAAEIYG-IPKTRQIYERAIES 617 (703)
Q Consensus 550 -~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~ 617 (703)
....++..+|.++...|++++|...++++++..+.. ....++...+..+...|+ +++|...|++|+..
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 113588999999999999999999999999876543 123456666666777885 59999999999975
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.78 E-value=9.6e-08 Score=81.45 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc-cccHHHHHHHHHhcCChHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP---RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH-HRVWPLYLSFVKSHAVPETA 161 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~~A 161 (703)
|++++|...|+++++..|+++ .+|..++.++...|++++|...|++++...|.+.. +.++..++.++...|++++|
T Consensus 16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A 95 (129)
T 2xev_A 16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEA 95 (129)
T ss_dssp TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999999998 89999999999999999999999999999994211 56688889999999999999
Q ss_pred HHHHHHHHhhCCCCHHH
Q psy6461 162 VRVFRRYLKLFPEDAED 178 (703)
Q Consensus 162 ~~~~~~~l~~~p~~~~~ 178 (703)
+..|++++..+|++...
T Consensus 96 ~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 96 QQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHCCCChHH
Confidence 99999999999998653
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.75 E-value=3.2e-07 Score=96.77 Aligned_cols=95 Identities=9% Similarity=0.017 Sum_probs=71.1
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC---CCcchHHHHHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY---TKVEDLATVWCEWAELELR 442 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~ 442 (703)
|++.+|...+.+++.........+....++...+.++...|++++|+..|++++...+ ..+.....++...+.++..
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE 228 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 6667777777766655433333344677899999999999999999999999987632 2222235678888888888
Q ss_pred cCCHHHHHHHHHHHhcCC
Q psy6461 443 AGQEEAALRLMARATATP 460 (703)
Q Consensus 443 ~~~~~~A~~~~~~a~~~~ 460 (703)
.+++++|...|.+++...
T Consensus 229 ~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 229 DKDYKTAFSYFFESFESY 246 (434)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh
Confidence 999999999999987643
No 187
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.75 E-value=2.4e-07 Score=86.06 Aligned_cols=162 Identities=11% Similarity=0.048 Sum_probs=116.8
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHH
Q psy6461 441 LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYL 520 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~ 520 (703)
+..|++++|...++.... +|.. ...++...+.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~----------------~~~~~~~l~~~~~~~g~~----------------------- 42 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPAT----------------ASGARFMLGYVYAFMDRF----------------------- 42 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTT----------------HHHHHHHHHHHHHHTTCH-----------------------
T ss_pred cccccHHHHHHHHHHhcC-ChHH----------------HHHHHHHHHHHHHHhCcH-----------------------
Confidence 457889999985544443 4432 366777777777766654
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhCCCc----chHHHHHHHHHHHHHcCChHHHHHHHHHHhhc---cCcc--hHHHHH
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLEACPPR----YAKTLYLLYAKLEEEHGLARHAMAVYERATGA---VLPE--EMFEMF 591 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~--~~~~~~ 591 (703)
++|+..|++++...... ....++..+|.++...|++++|...+++++.. .+++ .....+
T Consensus 43 ------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 110 (203)
T 3gw4_A 43 ------------DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA 110 (203)
T ss_dssp ------------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 88999999998842211 11468899999999999999999999999987 3422 223455
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCC--cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 592 NIYIKKAAEIYGIPKTRQIYERAIESLPE--EP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
..........|++++|+..++++++..+. ++ ....+..++.++...|++++|+..+++++++.
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 56666677789999999999999976432 22 12356788999999999999999999998874
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.74 E-value=4.8e-08 Score=100.27 Aligned_cols=118 Identities=8% Similarity=-0.008 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLK----------------ELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~----------------~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 93 (703)
...|..++..+. .+++++|...|+++++ ..|.+..+|..++..+... |++++|..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--------g~~~~A~~ 294 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM--------SDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc--------cCHHHHHH
Confidence 456777887777 9999999999999998 4445555555555544432 45555555
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
.|+++++.+|+++.+|..++.++...|++++|...|+++++..|. +..++..+..++...++.
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~--~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE--DKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555552 344444444444444333
No 189
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.73 E-value=7.4e-08 Score=82.08 Aligned_cols=122 Identities=13% Similarity=0.038 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....|..+|..+...|++++|+..|++++...|.++ .++..++.++...|++++|...+++++...|.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--- 75 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY--- 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH---
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH---
Confidence 356789999999999999999999999999999887 8999999999999999999999999998876421000
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
......+..++.++...|+ +++|...|+++++..|+
T Consensus 76 -------~~~~~~~~~la~~~~~~~~-----------------------------------~~~A~~~~~~~~~~~~~-- 111 (131)
T 1elr_A 76 -------RQIAKAYARIGNSYFKEEK-----------------------------------YKDAIHFYNKSLAEHRT-- 111 (131)
T ss_dssp -------HHHHHHHHHHHHHHHHTTC-----------------------------------HHHHHHHHHHHHHHCCC--
T ss_pred -------HHHHHHHHHHHHHHHHhcc-----------------------------------HHHHHHHHHHHHHhCCC--
Confidence 0014556666666665555 48899999999998884
Q ss_pred hHHHHHHHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEE 564 (703)
Q Consensus 551 ~~~~~~~~a~~~~~ 564 (703)
+..+..++.+...
T Consensus 112 -~~~~~~l~~~~~~ 124 (131)
T 1elr_A 112 -PDVLKKCQQAEKI 124 (131)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 3566666655443
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.73 E-value=9.4e-09 Score=104.39 Aligned_cols=155 Identities=12% Similarity=0.013 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
...|...|..+...|++++|+..|++++...|.+. .+ ...++..++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~-------~~~~~~~~~~~~l~----------------- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MF-------QLYGKYQDMALAVK----------------- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HH-------TCCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hh-------hhcccHHHHHHHHH-----------------
Confidence 45678889999999999999999999999887542 11 12233344433221
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
..+|..++.++...|++ ++|+..|+++++.+|++
T Consensus 230 ---------~~~~~nla~~~~~~g~~-----------------------------------~~A~~~~~~al~~~p~~-- 263 (338)
T 2if4_A 230 ---------NPCHLNIAACLIKLKRY-----------------------------------DEAIGHCNIVLTEEEKN-- 263 (338)
T ss_dssp ---------THHHHHHHHHHHTTTCC-----------------------------------HHHHHHHHHHHHHCTTC--
T ss_pred ---------HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCCCC--
Confidence 24677778888777665 88899999999998888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHH-HHHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKK-AAEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
..+|..+|.++...|++++|+..|++++...|.+.. ++..+... ....+..+.++.+|.+++...|+++.
T Consensus 264 ~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~--a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 264 PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA--IRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 578888999988999999999999999988887743 33333333 22345677888899999988887654
No 191
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=5.4e-07 Score=83.62 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=124.4
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc----chHHHHHHHHHHHHHHhcCc
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP----EEMFEMFNIYIKKAAEIYGI 604 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~ 604 (703)
.|++++|++.++.... +|... ..++..+|.++...|++++|+..+++++..... ......+......+...|++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATA-SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHhcC-ChHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4678999995555433 55432 578999999999999999999999999985321 12234555666667778999
Q ss_pred hHHHHHHHHHHHh---CCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC----ChHhHHHHHHHHHHcCC
Q psy6461 605 PKTRQIYERAIES---LPEEP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV----TAGFWAAWKSFEITHGN 675 (703)
Q Consensus 605 ~~A~~~~~~al~~---~p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~g~ 675 (703)
++|...++++++. .|+++ ...++..++.++...|++++|...+++++++.+... ....+..++......|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999998 55443 234678889999999999999999999997643221 23446788889999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy6461 676 EDTMREMLRIKRSVQAQYN 694 (703)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~ 694 (703)
.++|.+.++.+..+..+.+
T Consensus 163 ~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9999999888777765554
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.70 E-value=1.2e-07 Score=97.27 Aligned_cols=124 Identities=11% Similarity=0.054 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhc----------------cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATL----------------VPYTKVEDLATVWCEWAELELRAGQEEAALRLMAR 455 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 455 (703)
...|..+|..+...|++++|+..|+++++ ..|.+. .+|..++.++.+.|++++|+..+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~----~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL----SCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH----HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHH----HHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44678889999999999999999999998 334333 7788888888888888888888888
Q ss_pred HhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHH
Q psy6461 456 ATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERA 535 (703)
Q Consensus 456 a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A 535 (703)
+++.+|++ ...|+.++.++...|++ ++|
T Consensus 299 al~~~p~~-----------------~~a~~~lg~~~~~~g~~-----------------------------------~eA 326 (370)
T 1ihg_A 299 ALEIDPSN-----------------TKALYRRAQGWQGLKEY-----------------------------------DQA 326 (370)
T ss_dssp HHTTCTTC-----------------HHHHHHHHHHHHHTTCH-----------------------------------HHH
T ss_pred HHHhCchh-----------------HHHHHHHHHHHHHccCH-----------------------------------HHH
Confidence 88888874 77788888777776664 888
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHH
Q psy6461 536 RDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMA 573 (703)
Q Consensus 536 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 573 (703)
+..|+++++.+|++ ..++..++.++...|+.+++.+
T Consensus 327 ~~~l~~Al~l~P~~--~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 327 LADLKKAQEIAPED--KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887 5678888887777776666544
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=5.1e-07 Score=95.22 Aligned_cols=214 Identities=11% Similarity=0.077 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcc-------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVE-------------DLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
..+.-|+-+...|++++|+..|.++++..|.... .....+..++.++...|++++|.+.+.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3455677778899999999999999998765431 123457889999999999999999999988765
Q ss_pred CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy6461 461 ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE 540 (703)
Q Consensus 461 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~ 540 (703)
+.... .. ....+....+.+... .++.++|..+++
T Consensus 86 ~~~~~---------~~--~~~~~~~~l~~~~~~-----------------------------------~~~~~~a~~~~~ 119 (434)
T 4b4t_Q 86 MQFAK---------SK--TVKVLKTLIEKFEQV-----------------------------------PDSLDDQIFVCE 119 (434)
T ss_dssp HTSCH---------HH--HHHHHHHHHHHHCSC-----------------------------------CSCHHHHHHHHH
T ss_pred HHccc---------hH--HHHHHHHHHHHHHhC-----------------------------------CCCHHHHHHHHH
Confidence 43200 00 001111111112112 345688888888
Q ss_pred HHHHhCCCc----chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC----cchHHHHHHHHHHHHHHhcCchHHHHHHH
Q psy6461 541 QCLEACPPR----YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL----PEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612 (703)
Q Consensus 541 ~al~~~p~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (703)
+++...+.. ....++..+|.++...|++++|..++++++.... ......++...+..+...|++++|+.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 199 (434)
T 4b4t_Q 120 KSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT 199 (434)
T ss_dssp HHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 888753321 1245888999999999999999999998876532 22345667777777788899999999999
Q ss_pred HHHHhCC---Ccc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 613 RAIESLP---EEP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 613 ~al~~~p---~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+++...| +.+ ...++...+.++...|++++|...|..+++.
T Consensus 200 ~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 200 AARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9987643 222 1235666777777889999999999888764
No 194
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.63 E-value=1.1e-06 Score=87.34 Aligned_cols=156 Identities=7% Similarity=0.010 Sum_probs=116.5
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh------cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK------NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~------~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
+-++....-|.+.++|-.+.+-.. ..++.+|+.+|++|++.+|+....|..++.....................
T Consensus 182 e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~ 261 (372)
T 3ly7_A 182 MQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 261 (372)
T ss_dssp HHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence 455666778999999999875443 24568999999999999999999887655544321111111112233333
Q ss_pred HHHHHH--HHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 93 NTFERS--LVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 93 ~~~~~a--l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
..++++ +...|.++.++..++..+...|++++|...+++|+..+|. ...|..++..+...|++++|+..|++++.
T Consensus 262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344432 2446999999999999888899999999999999999973 45566778888889999999999999999
Q ss_pred hCCCCHH
Q psy6461 171 LFPEDAE 177 (703)
Q Consensus 171 ~~p~~~~ 177 (703)
++|....
T Consensus 339 L~P~~~t 345 (372)
T 3ly7_A 339 LRPGANT 345 (372)
T ss_dssp HSCSHHH
T ss_pred cCCCcCh
Confidence 9998753
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.59 E-value=1.9e-07 Score=77.94 Aligned_cols=86 Identities=14% Similarity=0.026 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (703)
+.|...|+++++.+|++ +.+|..+|.++...|++++|+..|++++...|.+ ...|..+...+...|++++|+..|+
T Consensus 2 ~~a~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN--MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--SVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45788888888888887 5688888888888888888888888888888876 3455556666666778888888888
Q ss_pred HHHHhCCCcc
Q psy6461 613 RAIESLPEEP 622 (703)
Q Consensus 613 ~al~~~p~~~ 622 (703)
++++..|+..
T Consensus 78 ~al~~~~~~~ 87 (115)
T 2kat_A 78 SGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHhccccc
Confidence 8877766543
No 196
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.57 E-value=1.3e-06 Score=82.88 Aligned_cols=177 Identities=15% Similarity=0.091 Sum_probs=121.5
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-------c---------------CchhHHHHHHHHH-------Hhh-CCC-----
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-------N---------------APKAIINTIYERS-------LKE-LPG----- 62 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-------~---------------~~~~~a~~~~e~a-------l~~-~P~----- 62 (703)
+-+|-.+..+|.+...-...+..+. + .++.+|+.+|.|+ |.. .|.
T Consensus 53 k~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~ 132 (301)
T 3u64_A 53 KVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFTREV 132 (301)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 5688889999999877666544332 1 1244666665543 443 242
Q ss_pred ------------------CH--HHHHHHHHHHHHhc-ccCCCCchhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc
Q psy6461 63 ------------------SY--KLWYNYLKLRRKQV-KGKVITDPSYEDVNNTFERSLVFMHK--MPRIWLDYGRFLMDQ 119 (703)
Q Consensus 63 ------------------~~--~~w~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~ 119 (703)
++ -+|...+..-.... ++.-...+....|+..++||++.+|+ +..+|..++.++...
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence 22 34544443322222 22233456788899999999999998 778999999999884
Q ss_pred -----cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh-cCChHHHHHHHHHHHhhCCCC-HHHHHHHHHhcCCHHHH
Q psy6461 120 -----HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS-HAVPETAVRVFRRYLKLFPED-AEDYIEYLSSIERLDEA 192 (703)
Q Consensus 120 -----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~A 192 (703)
|+.++|+..|+|||+++|. .+...+..|++++.. .|+.+.+.+.+++++..+|.. +. .-+.+.++-.+|
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~-~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~---~~lan~~~q~eA 288 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSA-HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH---NKLLVILSQKRA 288 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCT-TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS---CHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC---hhHHHHHHHHHH
Confidence 8999999999999999994 247888899999877 488999999999999988874 21 112233444555
Q ss_pred HHHHHH
Q psy6461 193 AVKLAY 198 (703)
Q Consensus 193 ~~~~~~ 198 (703)
..++.+
T Consensus 289 ~~LL~~ 294 (301)
T 3u64_A 289 RWLKAH 294 (301)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555543
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.53 E-value=2.8e-07 Score=74.61 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=54.2
Q ss_pred hCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 59 ELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 59 ~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
.+|+++.+|..++..+... |++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++..|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH--------DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4677888887777776553 77888888888888888888888888888888888888888888888877663
No 198
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.51 E-value=3.4e-06 Score=80.06 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=79.6
Q ss_pred hHHHhHhhcC-CCCchHHHHHHHHHHHHHHh---C---CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-----c
Q psy6461 498 KAYEKGIALF-KWPYIFDIWNTYLTKFLSRY---G---GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE-----H 565 (703)
Q Consensus 498 ~~~e~al~~~-~~~~~~~~~~~y~~~~~~~~---~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~-----~ 565 (703)
.-++.++... +......+|..-+..-.... + .+....|+..++++++++|+......|..+|.++.. .
T Consensus 138 ~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~g 217 (301)
T 3u64_A 138 QRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFG 217 (301)
T ss_dssp HHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTT
T ss_pred hhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccC
Confidence 4455555544 22334555555442211111 0 124578888999999999984334588888888887 4
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHhCCCc
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE-IYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~ 621 (703)
|+.++|+..|++|+.++|+.. ......|..+++. .++.+.++..+++++...|..
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~-id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHD-PDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTC-SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 888888888888888888531 2355566777665 377788888888888876653
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.50 E-value=7.7e-07 Score=70.22 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHH
Q psy6461 29 FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPR 107 (703)
Q Consensus 29 ~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 107 (703)
.+...|..++..+. .+++++|...|+++++.+|.+...|..++..+... |++++|...|+++++.+|+++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--------GDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHhcCCCCHH
Confidence 34556666666555 66666666666666666666666666666555442 5666666666666666666666
Q ss_pred HHHHHHHHHHh
Q psy6461 108 IWLDYGRFLMD 118 (703)
Q Consensus 108 ~~~~~~~~~~~ 118 (703)
++..++.++..
T Consensus 79 ~~~~l~~~~~~ 89 (91)
T 1na3_A 79 AKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666665543
No 200
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.48 E-value=8.1e-07 Score=78.69 Aligned_cols=135 Identities=7% Similarity=-0.063 Sum_probs=100.9
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY------KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~------~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
...+..++..+. .|++++|...|+++++..|... ..+..++..... .|++++|...|++++...+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF--------LGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHH
Confidence 356677777777 8999999999999999877433 244555555443 3889999999999998865
Q ss_pred CC------HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc----cccccHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q psy6461 104 KM------PRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT----QHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173 (703)
Q Consensus 104 ~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 173 (703)
.. ..++..++.++...|++++|...+++++...+.. .....+..++.++...|++++|+..++++++...
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 42 5678888899999999999999999998864321 1134456667777788888888888888876543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=2.1e-07 Score=76.86 Aligned_cols=91 Identities=7% Similarity=-0.069 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC----
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---- 105 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---- 105 (703)
.+.|..++.... .|++++|...|+++++.+|.++.+|..++..+... |++++|...|+++++..|++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL--------GEYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHTSCSSTTSHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCccHHH
Confidence 445555555555 56666666666666666666666666555554432 55666666666666666655
Q ss_pred --HHHHHHHHHHHHhccChHHHHHHH
Q psy6461 106 --PRIWLDYGRFLMDQHKITQTRHVF 129 (703)
Q Consensus 106 --~~~~~~~~~~~~~~~~~~~A~~~~ 129 (703)
..++..++.++...|+.+.|...|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 555555555555555544444433
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.43 E-value=1.4e-06 Score=68.64 Aligned_cols=84 Identities=12% Similarity=0.220 Sum_probs=74.2
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
....+|..+|..+...|++++|+..|++++...|.++ .+|..++.++.+.|++++|+..|++++..+|++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------ 76 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------ 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------
Confidence 3567889999999999999999999999999999887 889999999999999999999999999999985
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESF 494 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (703)
...+..++.++...
T Consensus 77 -----------~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 77 -----------AEAKQNLGNAKQKQ 90 (91)
T ss_dssp -----------HHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhc
Confidence 67777777766544
No 203
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=2.5e-06 Score=75.43 Aligned_cols=125 Identities=14% Similarity=-0.011 Sum_probs=56.8
Q ss_pred CCChhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch----HHHHHHHHHHHHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE----MFEMFNIYIKKAAE 600 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~ 600 (703)
.+++++|...++++++..+... ...++..+|.++...|++++|...+++++...+... ...++.........
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3455555555555555433211 012455555555555555555555555555433210 11223333333344
Q ss_pred hcCchHHHHHHHHHHHhCCCc---c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 601 IYGIPKTRQIYERAIESLPEE---P-TRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~---~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.|++++|...++++++..+.. + ....+..++.++...|++++|...+++++++
T Consensus 102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455555555555555442211 1 1123444455555555555555555555544
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.9e-07 Score=77.03 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc--
Q psy6461 64 YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH-- 141 (703)
Q Consensus 64 ~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 141 (703)
...|...+..... .|++++|...|+++++..|+++.+|..++.++...|++++|...|+++++..|.+..
T Consensus 4 ~~~~~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 4 FEKQKEQGNSLFK--------QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHH
T ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHH
Confidence 4556666655443 378888888888888888888888888888888888888888888888888884211
Q ss_pred --cccHHHHHHHHHhcCChHHHHHH
Q psy6461 142 --HRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 142 --~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
..++..++..+...|+.+.|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhH
Confidence 33444455555555555444433
No 205
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.37 E-value=1.7e-05 Score=84.56 Aligned_cols=158 Identities=12% Similarity=0.034 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCC---------hHHHHHHHHHHhhcc--CcchHHHHHHHHHHH
Q psy6461 531 KLERARDLFEQCLEA--CPPRYAKTLYLLYAKLEEEHGL---------ARHAMAVYERATGAV--LPEEMFEMFNIYIKK 597 (703)
Q Consensus 531 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~---------~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~ 597 (703)
++++|+++|+++.+. .|+ ...|..+...+...|. .++|..+|++..... |+ ...|...+..
T Consensus 41 ~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---~~tyn~lI~~ 114 (501)
T 4g26_A 41 DVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---EATFTNGARL 114 (501)
T ss_dssp CHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHH
Confidence 346666666666654 233 2345445444433322 455666666554432 32 3456666666
Q ss_pred HHHhcCchHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCC
Q psy6461 598 AAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN 675 (703)
Q Consensus 598 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~ 675 (703)
+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|+.++|..+|+...+. .-..+..+|+.+...+...|.
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPR---LRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCc---cceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhCCC
Confidence 66666666666666666554 233 224556666666666666666666665543 111135666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc
Q psy6461 676 EDTMREMLRIKRSVQAQYNTQVLF 699 (703)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~ 699 (703)
.++|.++++..|....+|+ +.||
T Consensus 191 ~d~A~~ll~~Mr~~g~~ps-~~T~ 213 (501)
T 4g26_A 191 ADKVYKTLQRLRDLVRQVS-KSTF 213 (501)
T ss_dssp HHHHHHHHHHHHHHTSSBC-HHHH
T ss_pred HHHHHHHHHHHHHhCCCcC-HHHH
Confidence 6666666666665554444 3444
No 206
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.37 E-value=2.6e-05 Score=83.05 Aligned_cols=187 Identities=11% Similarity=0.099 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCC
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATA--TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFK 508 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~ 508 (703)
.++......+.+.|++++|..+|++..+ ..|+ ...|+.++..+...+.. ..+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd------------------~~tyn~Li~~c~~~~~~---~~~----- 80 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS------------------QYHYNVLLYVCSLAEAA---TES----- 80 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC------------------HHHHHHHHHHHTTCCCC---SSS-----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------------------HhHHHHHHHHHHhCCch---hhh-----
Confidence 4567777888899999999999999875 4554 56677777666554432 000
Q ss_pred CCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--cCc
Q psy6461 509 WPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA--CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA--VLP 584 (703)
Q Consensus 509 ~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~ 584 (703)
...+.+++|.++|+++... .|+ ...|..++..+.+.|+.++|..+|++..+. .|+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd 139 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPN---EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR 139 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Confidence 0122358899999998875 455 468999999999999999999999988765 344
Q ss_pred chHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-CCCCChH
Q psy6461 585 EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC-DPRVTAG 661 (703)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~ 661 (703)
...|...+..+.+.|++++|..+|+.+.+. .|+ ...+..++..+.+.|+.++|..++++..+.. .| +..
T Consensus 140 ---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p--s~~ 211 (501)
T 4g26_A 140 ---LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE---EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV--SKS 211 (501)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB--CHH
T ss_pred ---cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc--CHH
Confidence 568899999999999999999999999986 354 3478899999999999999999999987642 23 466
Q ss_pred hHHHHHHHHHH
Q psy6461 662 FWAAWKSFEIT 672 (703)
Q Consensus 662 ~~~~~~~~~~~ 672 (703)
+++........
T Consensus 212 T~~~l~~~F~s 222 (501)
T 4g26_A 212 TFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 77666655443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.32 E-value=1.3e-06 Score=70.62 Aligned_cols=73 Identities=7% Similarity=0.084 Sum_probs=65.5
Q ss_pred hcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 101 FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 101 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
.+|+++.+|..+|.++...|++++|...|+++++.+| ....+|..++.++...|++++|+..|+++++..|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4799999999999999999999999999999999999 457899999999999999999999999999886643
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.22 E-value=2.2e-06 Score=68.97 Aligned_cols=80 Identities=9% Similarity=0.007 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPR-IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
|++++|...|+++++..|+++. +|..+|.++...|++++|...|+++++.+|. +..+|.. +...++...
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~--------~~~~~a~~~ 83 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD--SPALQAR--------KMVMDILNF 83 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHH--------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHH--------HHHHHHHHH
Confidence 7888899999999999998888 9999999998899999999999999998884 3444422 234666777
Q ss_pred HHHHHhhCCCC
Q psy6461 165 FRRYLKLFPED 175 (703)
Q Consensus 165 ~~~~l~~~p~~ 175 (703)
|++++..+|++
T Consensus 84 ~~~~~~~~p~~ 94 (99)
T 2kc7_A 84 YNKDMYNQLEH 94 (99)
T ss_dssp HCCTTHHHHCC
T ss_pred HHHHhccCccc
Confidence 77776666654
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.21 E-value=2.7e-06 Score=68.41 Aligned_cols=87 Identities=10% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHHHHhh-cCchhHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy6461 36 RYIEHKK-NAPKAIINTIYERSLKELPGSYK-LWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYG 113 (703)
Q Consensus 36 ~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 113 (703)
..+.... .|++++|...|+++++.+|.+.. .|..++..+... |++++|...|+++++.+|+++.+|..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~-- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL--------GDWQKALNNYQSAIELNPDSPALQAR-- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTSTHHHHH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCcHHHHHH--
Confidence 3455555 89999999999999999999999 999999887765 89999999999999999999988743
Q ss_pred HHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 114 RFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 114 ~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
+.+.++...|++++...|.
T Consensus 75 ------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 ------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp ------HHHHHHHHHHCCTTHHHHC
T ss_pred ------HHHHHHHHHHHHHhccCcc
Confidence 5667788888888887774
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.20 E-value=3e-05 Score=77.00 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=99.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---c-----Ch
Q psy6461 51 TIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ---H-----KI 122 (703)
Q Consensus 51 ~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~-----~~ 122 (703)
...+++...-|.+.+.|..|++....... ....+..+|+.+|++|++.+|+.+.+|..++.++... + ..
T Consensus 181 ~e~~r~~~~~p~~~~Aydl~Lra~~~l~~---~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 181 RMQETLQKILPHRGALLTNFYQAHDYLLH---GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHHHHHHHSCSSGGGHHHHHHHHHHHHH---CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 34556778889999999888866432211 1235678999999999999999999998777766421 1 11
Q ss_pred HHHHHHHHHHH--HhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy6461 123 TQTRHVFDRAL--RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIV 200 (703)
Q Consensus 123 ~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~ 200 (703)
......++++. ...| ..+.++..++......|+++.|+..+++++.++|+
T Consensus 258 ~~l~~a~~a~~a~~~~~--~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-------------------------- 309 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELN--NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-------------------------- 309 (372)
T ss_dssp HHHHHHHHHHHTCGGGT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--------------------------
T ss_pred HHHHHHHHHHHhcccCC--cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--------------------------
Confidence 11222222211 1223 23444444444444456666666666666655532
Q ss_pred cccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 201 NKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 201 ~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
...|..+|..+.-.|++++|.+.|++++.
T Consensus 310 ---------------------------------------------------~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 310 ---------------------------------------------------WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 13567778888899999999999999999
Q ss_pred hcCCcc
Q psy6461 281 TVTTVR 286 (703)
Q Consensus 281 ~~~~~~ 286 (703)
..|...
T Consensus 339 L~P~~~ 344 (372)
T 3ly7_A 339 LRPGAN 344 (372)
T ss_dssp HSCSHH
T ss_pred cCCCcC
Confidence 988754
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.14 E-value=1e-05 Score=63.91 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=64.8
Q ss_pred cCCCHHHHHHHHHHHHhccC---hHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 102 MHKMPRIWLDYGRFLMDQHK---ITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 102 ~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
+|+++.+|..++.++...++ .++|+.+++++|+.+| .++..+..++..+...|++++|+..|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999976554 7999999999999999 458888888999889999999999999999999984
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.12 E-value=1.5e-05 Score=62.89 Aligned_cols=74 Identities=7% Similarity=-0.137 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 60 LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 60 ~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
+|.++++|..++..+..... ....++|...++++++.+|+++..+..+|..++..|++++|...+++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~-----~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHK-----QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTT-----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 69999999999988753211 123689999999999999999999999999999999999999999999999994
No 213
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.90 E-value=0.00018 Score=75.86 Aligned_cols=126 Identities=11% Similarity=0.014 Sum_probs=89.0
Q ss_pred CCCChhHHHHHHHHHHHhC-----CCcc-hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc-----Ccch-HHHHHHHHH
Q psy6461 528 GGTKLERARDLFEQCLEAC-----PPRY-AKTLYLLYAKLEEEHGLARHAMAVYERATGAV-----LPEE-MFEMFNIYI 595 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~-----p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~~~~~ 595 (703)
..|++++|+.++++++++. |++. ...++.++|.++...|++++|..++++++... |+++ ....+...+
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4678899999999999863 4442 13578889999999999999999999988653 3332 223445556
Q ss_pred HHHHHhcCchHHHHHHHHHHHh-----CCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 596 KKAAEIYGIPKTRQIYERAIES-----LPEEPTR-QMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..+..+|++++|+.+|++|++. .|++|.+ .+...++..+..+|.+++|...|.+|.+-
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666678888888888888864 5676642 24445556666777788888888777653
No 214
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=0.00024 Score=75.03 Aligned_cols=128 Identities=9% Similarity=0.083 Sum_probs=99.4
Q ss_pred HHHcCChHHHHHHHHHHhhcc-----Ccch-HHHHHHHHHHHHHHhcCchHHHHHHHHHHHh-----CCCcch-HHHHHH
Q psy6461 562 EEEHGLARHAMAVYERATGAV-----LPEE-MFEMFNIYIKKAAEIYGIPKTRQIYERAIES-----LPEEPT-RQMCLK 629 (703)
Q Consensus 562 ~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~-~~~~~~ 629 (703)
+...|++++|..++++++... |++. ....+...+..+..+|++++|..+++++|+. .|++|. ...+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 447899999999999998763 3332 3456667777788899999999999999975 577775 336678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccc----CCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQIC----DPRVT---AGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~----~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
+|.++..+|++++|..+|++|+++. .++ + ..+...+.......|.+..++.++..+|...
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998762 344 3 3444555566666788999999998888744
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.73 E-value=0.0002 Score=61.15 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=80.9
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHhC-CcccccccHHHHHHHHHhcCChH
Q psy6461 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH---KITQTRHVFDRALRAL-PITQHHRVWPLYLSFVKSHAVPE 159 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~ 159 (703)
..+....+++.|.+.+...|.+..+.+.|+.++.... +++++..+|+..++.. |. .+.+.+..++-.+.+.++++
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHccCHH
Confidence 3466788999999999999999999999999999987 6679999999999988 63 34566666677778999999
Q ss_pred HHHHHHHHHHhhCCCCHHH
Q psy6461 160 TAVRVFRRYLKLFPEDAED 178 (703)
Q Consensus 160 ~A~~~~~~~l~~~p~~~~~ 178 (703)
+|++.++++++.+|++..+
T Consensus 89 ~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999753
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.68 E-value=0.00066 Score=58.16 Aligned_cols=111 Identities=7% Similarity=-0.031 Sum_probs=80.3
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD----Q 119 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~ 119 (703)
.++++|...|+++.+..+.... ++.++. ..+.+++|...|+++.+. +++..+..++.++.. .
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~--------~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSN--------SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTC--------TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHH--------cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCC
Confidence 4678888888888887644443 333221 124566788888888876 677888888888877 7
Q ss_pred cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh----cCChHHHHHHHHHHHhhC
Q psy6461 120 HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS----HAVPETAVRVFRRYLKLF 172 (703)
Q Consensus 120 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~ 172 (703)
+++++|...|+++.+.. ++..+..++.++.. .+++++|+..|+++.+..
T Consensus 75 ~d~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 78888888888888752 25667777777776 677888888888887753
No 217
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.00055 Score=58.66 Aligned_cols=110 Identities=10% Similarity=0.063 Sum_probs=86.7
Q ss_pred ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcCchH
Q psy6461 531 KLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYGIPK 606 (703)
Q Consensus 531 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~ 606 (703)
++++|...|+++.+..+.. .. ++.++...+..++|+..|+++.+..... .+.....++.. .+++++
T Consensus 10 d~~~A~~~~~~aa~~g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~----a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF----GC--LSLVSNSQINKQKLFQYLSKACELNSGN----GCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcCCCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHH----HHHHHHHHHHcCCCCCccHHH
Confidence 4589999999999986443 33 8888888889999999999999874432 23333444444 578999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccc
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~ 654 (703)
|...|+++.+. .+ +..+..++.++.. .+++++|..+|++|.+..
T Consensus 80 A~~~~~~Aa~~--g~--~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL--ND--QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT--TC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC--CC--HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999999987 33 3378888999988 899999999999999873
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.64 E-value=0.00046 Score=58.94 Aligned_cols=90 Identities=13% Similarity=0.052 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcc-CcchHHHHHHHHHHHHHHhcCchHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHG---LARHAMAVYERATGAV-LPEEMFEMFNIYIKKAAEIYGIPKT 607 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~A 607 (703)
+..+++.|.+.+...|.+ ..+.+.||..+.+.+ +.++++.+++..++.. |.+..-.+|.. .-.+.+.+++++|
T Consensus 14 l~~~~~~y~~e~~~~~~~--~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~L-Av~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL-AVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHH-HHHHHHccCHHHH
Confidence 467899999999887766 689999999999988 6669999999999988 63322233332 2233578999999
Q ss_pred HHHHHHHHHhCCCcchH
Q psy6461 608 RQIYERAIESLPEEPTR 624 (703)
Q Consensus 608 ~~~~~~al~~~p~~~~~ 624 (703)
+..++++|+..|++..+
T Consensus 91 ~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCCCCHHH
Confidence 99999999999988764
No 219
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.42 E-value=0.0072 Score=52.15 Aligned_cols=137 Identities=16% Similarity=0.222 Sum_probs=83.2
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 499 AYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLE-RARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYER 577 (703)
Q Consensus 499 ~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 577 (703)
.||..|......+....|..|+.+....+..+..+ .-..++++|++...++.. |
T Consensus 5 ~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~---Y---------------------- 59 (164)
T 2wvi_A 5 AFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKR---Y---------------------- 59 (164)
T ss_dssp HHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGG---G----------------------
T ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhh---h----------------------
Confidence 46666665455667888888888777766543322 345677777776544310 0
Q ss_pred HhhccCcch-HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 578 ATGAVLPEE-MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 578 al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
-+|. -+.+|..|+.+. +.++.+|..+....-....+.+|..||.++...|++.+|..+|+++++.. -
T Consensus 60 -----knD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~-A 127 (164)
T 2wvi_A 60 -----YSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK-A 127 (164)
T ss_dssp -----TTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-C
T ss_pred -----ccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 0010 123444444432 34666677666665444456689999999999999999999999998863 2
Q ss_pred CCChHhHHHHHHHHHH
Q psy6461 657 RVTAGFWAAWKSFEIT 672 (703)
Q Consensus 657 ~~~~~~~~~~~~~~~~ 672 (703)
.....+-..+..|...
T Consensus 128 ~P~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 128 EPLERLQSQHRQFQAR 143 (164)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 2135566666666543
No 220
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.28 E-value=0.0016 Score=55.34 Aligned_cols=133 Identities=12% Similarity=0.101 Sum_probs=92.2
Q ss_pred ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc---CChHHHHHHHHHHhhccCcchH-------HHHHHHHHHHHHH
Q psy6461 531 KLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH---GLARHAMAVYERATGAVLPEEM-------FEMFNIYIKKAAE 600 (703)
Q Consensus 531 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~~~ 600 (703)
....+++.|+..+.....+.+...|..|+...... |. ..-..+++++++.+.++.. +.+|..|++
T Consensus 5 ~~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~---- 79 (152)
T 4a1g_A 5 TPENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAE---- 79 (152)
T ss_dssp HHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHT----
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH----
Confidence 45677888888888754443457888888876542 43 3467788899888866431 345555543
Q ss_pred hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 601 IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
..++++.+|..+....-....+.++..||.++.+.|++++|..+|+++++.. -.....+-..+..|..
T Consensus 80 --~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~-A~P~~rL~~~~~~F~~ 147 (152)
T 4a1g_A 80 --YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ-AEPREFLQQQYRLFQT 147 (152)
T ss_dssp --TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBSHHHHHHHHHHHHH
T ss_pred --hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHH
Confidence 3566888998888776555566789999999999999999999999998863 2212455555555554
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.28 E-value=0.00078 Score=69.84 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=76.8
Q ss_pred CCchhHHHHHHHHHHhcCCCc--cCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc-----CCCCcchHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKL--AVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV-----PYTKVEDLATVWCEWAE 438 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~ 438 (703)
|++++|...|++++....... ..+.....+.++|.+|...|++++|+.+|++++.+ .|.++ .....++.+|.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-NVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHH
Confidence 788999999999988632221 12345677888999999999999999999999876 46665 55677999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC
Q psy6461 439 LELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~ 459 (703)
++..+|++++|..+|++|+++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999999864
No 222
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.27 E-value=0.0069 Score=51.46 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHHc
Q psy6461 568 ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI---YGIPKTRQIYERAIESLPEEP-------TRQMCLKFAEMETKL 637 (703)
Q Consensus 568 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~a~~~~~~ 637 (703)
...+++.||..+.....+++..+|.-|+....+. |. ..-..++++|++.+.+++ ...+|+.|+++ .
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~ 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY---N 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT---B
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh---c
Confidence 4556778888888777777888888888887652 22 335678888887765433 24588888775 2
Q ss_pred CCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy6461 638 GEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQY 693 (703)
Q Consensus 638 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 693 (703)
+.++.+|+......=....+.+|..|+.+....|+..+|.+|++....-.++|
T Consensus 82 ---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 ---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp ---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33777777766543233368889999999988899999988887665544444
No 223
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0048 Score=54.91 Aligned_cols=139 Identities=12% Similarity=0.087 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHc---CCh---HHHH-HHHHHHhhccCcch-------HHHHHHH
Q psy6461 531 KLERARDLFEQCLEA---CPPRYAKTLYLLYAKLEEEH---GLA---RHAM-AVYERATGAVLPEE-------MFEMFNI 593 (703)
Q Consensus 531 ~~~~A~~~~~~al~~---~p~~~~~~~~~~~a~~~~~~---g~~---~~A~-~~~~~al~~~p~~~-------~~~~~~~ 593 (703)
.+.+.|+.|++.+.. ..++ +...|..|+...... |.. ..-. .++++++..+.++. -+.+|..
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dD-PL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~ 85 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDD-PLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIW 85 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSC-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCC-chHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 367889999999988 3444 357899998875432 332 2234 79999999887653 2467777
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 594 YIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
|+.+.. ..+..+++.+|.-+....-....+.+|..||.++...|++.+|..+|+++++..- .....+-..+..|...
T Consensus 86 Ya~~~~-~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A-~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 86 YINLFL-SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC-RPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BSHHHHHHHHHHHHHH
T ss_pred HHHhhc-ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHH
Confidence 777651 2236699999999998866666677999999999999999999999999998742 2135566666666643
No 224
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.17 E-value=0.0017 Score=67.23 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=36.7
Q ss_pred HhcCchHHHHHHHHHHHh-----CCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 600 EIYGIPKTRQIYERAIES-----LPEEPT-RQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 600 ~~~~~~~A~~~~~~al~~-----~p~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.+|++++|..+++++|+. .|++|. ...+..+|.++..+|++++|..+|++|+++
T Consensus 352 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 352 YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 334444444444444432 456654 236678899999999999999999999886
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.17 E-value=0.0022 Score=51.57 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC-----cccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALP-----ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED 178 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 178 (703)
++.-.+.+|..+...+++..|...|+.|++..+ ......++..++..+.+.|+++.|+..++++++..|++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 556778899999999999999999999999742 11346778888889999999999999999999999999754
No 226
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.14 E-value=0.01 Score=53.85 Aligned_cols=131 Identities=14% Similarity=0.241 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHc---CC--hHHHHHHHHHHhhccCcch-------HHHHHHHHHHH
Q psy6461 532 LERARDLFEQCLEA--CPPRYAKTLYLLYAKLEEEH---GL--ARHAMAVYERATGAVLPEE-------MFEMFNIYIKK 597 (703)
Q Consensus 532 ~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~---g~--~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~ 597 (703)
.++.+..|+..|.. ..++ +...|..|+...... |. -..-..+++++++.+.++. -+.+|..|+.+
T Consensus 51 l~~~r~~fE~~i~~~~~~dD-PL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~ 129 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDD-PLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSC-THHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCC-ChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc
Confidence 36778888888875 2333 246888888765542 32 2235678888888765542 24577777753
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHH
Q psy6461 598 AAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFE 670 (703)
Q Consensus 598 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 670 (703)
.+.++.+|..+....-....+.+|..||.++...|++.+|..+|+++++..- .....+-..+..|.
T Consensus 130 ------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A-~P~~rL~~~~~~F~ 195 (223)
T 4aez_C 130 ------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA-KPFLRFQQKYQQFT 195 (223)
T ss_dssp ------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-BSHHHHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHH
Confidence 4678899999998766555677999999999999999999999999998731 21244555555554
No 227
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.019 Score=51.10 Aligned_cols=120 Identities=12% Similarity=0.110 Sum_probs=88.2
Q ss_pred hHHHhHhhc--CCCCchHHHHHHHHHHHHHHhCCCCh---hHHH-HHHHHHHHhCCCcc-------hHHHHHHHHHHHHH
Q psy6461 498 KAYEKGIAL--FKWPYIFDIWNTYLTKFLSRYGGTKL---ERAR-DLFEQCLEACPPRY-------AKTLYLLYAKLEEE 564 (703)
Q Consensus 498 ~~~e~al~~--~~~~~~~~~~~~y~~~~~~~~~~~~~---~~A~-~~~~~al~~~p~~~-------~~~~~~~~a~~~~~ 564 (703)
+.||+.|.. ....+-...|..|+.+....+..|.. ..-. .++++|++..-++. -..+|+.|+.+. .
T Consensus 13 ~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~ 91 (202)
T 3esl_A 13 IAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-L 91 (202)
T ss_dssp HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-c
Confidence 567777776 55667889999999888887743332 1234 78899888765541 125888888865 3
Q ss_pred cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC
Q psy6461 565 HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL 618 (703)
Q Consensus 565 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 618 (703)
.++..++..+|.-.....-......+|..|+.++...|++.+|..+|+.+++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 455778888888777666555456788899999888899999999999999875
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.04 E-value=0.0057 Score=49.14 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc-----hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE-----EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
+.-++.+|......|++..|..-|+.|++..+.+ ....++..+...+.+.|+++.|..+++++++..|+++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3456778888888888888888888887754221 23344444555555555666666666666666665543
No 229
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.04 E-value=0.0038 Score=53.89 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=83.1
Q ss_pred HHHHHHhhccCcchHHHHHHHHHHHHHHh---cCc-hHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHHcCCHH
Q psy6461 573 AVYERATGAVLPEEMFEMFNIYIKKAAEI---YGI-PKTRQIYERAIESLPEEP-------TRQMCLKFAEMETKLGEID 641 (703)
Q Consensus 573 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~-~~A~~~~~~al~~~p~~~-------~~~~~~~~a~~~~~~g~~~ 641 (703)
+.|+..+.....+++..+|..||...... |+. ..-..++++|+..+-+++ ...+|+.|+++ +++
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~~-- 78 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRL---CNE-- 78 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH---CSC--
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh---cCC--
Confidence 45777777666677788999999887662 222 234678999998876443 24599999987 344
Q ss_pred HHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q psy6461 642 RARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYN 694 (703)
Q Consensus 642 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 694 (703)
++.+|....+..=....+.+|..|+.+....|+..+|.+|+.....-.++|.
T Consensus 79 -p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 -PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp -HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred -HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 6677777655422333699999999999999999999999976655444443
No 230
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.89 E-value=0.013 Score=60.63 Aligned_cols=90 Identities=10% Similarity=0.070 Sum_probs=64.0
Q ss_pred HcCChHHHHHHHHHHhhcc-----Ccch-HHHHHHHHHHHHHHhcCchHHHHHHHHHHHh-----CCCcch-HHHHHHHH
Q psy6461 564 EHGLARHAMAVYERATGAV-----LPEE-MFEMFNIYIKKAAEIYGIPKTRQIYERAIES-----LPEEPT-RQMCLKFA 631 (703)
Q Consensus 564 ~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~-~~~~~~~a 631 (703)
..|++++|..++++++... |++. ...++...+..+...|++++|..+++++|+. .|++|. ...+..+|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 5677777777777777542 3332 2344555555566677888888888888754 466664 23567888
Q ss_pred HHHHHcCCHHHHHHHHHHHhcc
Q psy6461 632 EMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.++..+|++++|...|++|+++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999876
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.88 E-value=0.014 Score=47.79 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHH---HHHHHHHHhhcc-CcchHHHHHHHHHHHHHHhcCchHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARH---AMAVYERATGAV-LPEEMFEMFNIYIKKAAEIYGIPKT 607 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~---A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~A 607 (703)
+..++..|.+.+...+.+ ....+.||..+.+..+... ++.+++..++.. |......+|.. .....+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~~s--~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~L-Avg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL-AVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH-HHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHHhhhHHHH
Confidence 367888999988877655 6789999999998887766 889999988876 43333333322 2233468899999
Q ss_pred HHHHHHHHHhCCCcchHHHH
Q psy6461 608 RQIYERAIESLPEEPTRQMC 627 (703)
Q Consensus 608 ~~~~~~al~~~p~~~~~~~~ 627 (703)
+..++.+|+..|++..+...
T Consensus 94 ~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 99999999999998764333
No 232
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.79 E-value=0.0092 Score=54.09 Aligned_cols=120 Identities=11% Similarity=0.173 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHh---cC--chHHHHHHHHHHHhCCCcch-------HHHHHHHHHHH
Q psy6461 568 ARHAMAVYERATGA-VLPEEMFEMFNIYIKKAAEI---YG--IPKTRQIYERAIESLPEEPT-------RQMCLKFAEME 634 (703)
Q Consensus 568 ~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~---~~--~~~A~~~~~~al~~~p~~~~-------~~~~~~~a~~~ 634 (703)
.+..+..|+..+.. ...+++..+|.-|+...... |. -..-..++++|+..+-+++. ..+|+.|+++
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~- 129 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY- 129 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc-
Confidence 45667778888766 34456689999999988773 32 22357899999998765542 4599999885
Q ss_pred HHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy6461 635 TKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQY 693 (703)
Q Consensus 635 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 693 (703)
+ +.++.+|.......=....+.+|..|+.+....|.+.+|.+|++....-.++|
T Consensus 130 --~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 --I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp --C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred --c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3 46677777766543233369999999999999999999999997555544433
No 233
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.77 E-value=0.004 Score=64.58 Aligned_cols=93 Identities=12% Similarity=-0.057 Sum_probs=76.0
Q ss_pred CCchhHHHHHHHHHHhcCCCc--cCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc-----CCCCcchHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKL--AVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV-----PYTKVEDLATVWCEWAE 438 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~ 438 (703)
|++++|+..|++++....... ..+.....+..++..|...|++++|+.++++++.+ .|.+| .....++.+|.
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~l~nLa~ 379 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP-VRGVQVMKVGK 379 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-HHHHHHHHHHH
Confidence 888999999999987632221 12345678888899999999999999999999876 46665 55677999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC
Q psy6461 439 LELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~ 459 (703)
++..+|++++|..++++|+++
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999864
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.19 E-value=0.037 Score=45.33 Aligned_cols=92 Identities=10% Similarity=0.015 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHH---HHHHHHHHHHhC-CcccccccHHHHHHHHHhcCChHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQ---TRHVFDRALRAL-PITQHHRVWPLYLSFVKSHAVPETA 161 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~---A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~A 161 (703)
..+..++..|.+.+...+.+....+.|+-.+....+... +..+++..+... |. ........++-.+.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHhhhHHHH
Confidence 456678899999998888899999999999999776554 889999988876 52 2233334445555689999999
Q ss_pred HHHHHHHHhhCCCCHHH
Q psy6461 162 VRVFRRYLKLFPEDAED 178 (703)
Q Consensus 162 ~~~~~~~l~~~p~~~~~ 178 (703)
++.++..|+..|++..+
T Consensus 94 ~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhCCCCHHH
Confidence 99999999999999754
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.79 E-value=2.8 Score=42.19 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLE 332 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (703)
.+...+|..|...|+.++...++.......+..... ..+..-+.+ ++.+... +...+.........++
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka-----k~~k~v~~l----~~~~~~~---~~~~~~~~~~~~~~~~ 87 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA-----KAAKLVRSL----VDMFLDM---DAGTGIEVQLCKDCIE 87 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH-----HHHHHHHHH----HHHHTTS---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH-----HHHHHHHHH----HHHHhcC---CCcHHHHHHHHHHHHH
Confidence 578899999999999999888887654433222111 001111111 1111111 1122333444444444
Q ss_pred HHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHH
Q psy6461 333 DLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLED 410 (703)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 410 (703)
-.-..+-.|+.. ..=.+++.++ .|++.+|.+.+.+..+.+...+......+++..-.++|...+++.+
T Consensus 88 ~a~~~~r~flr~----------~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k 157 (394)
T 3txn_A 88 WAKQEKRTFLRQ----------SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPK 157 (394)
T ss_dssp HHHHTTCHHHHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHH
Confidence 433322222221 0001234433 3999999999998888765433223456788888899999999999
Q ss_pred HHHHHHHhhccC---CCCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHhcCC
Q psy6461 411 ARLIFDKATLVP---YTKVEDLATVWCEWAELEL-RAGQEEAALRLMARATATP 460 (703)
Q Consensus 411 A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~ 460 (703)
++..|.++.... +.+|.....+...-|.+++ ..+++.+|...|-.++...
T Consensus 158 ~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 158 ARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 999999986652 2333344567777778888 8999999999999887543
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.64 E-value=0.39 Score=40.00 Aligned_cols=91 Identities=9% Similarity=-0.060 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCh---HHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLA---RHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQ 609 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 609 (703)
...++.|++-.. + ..++...+.||..+.+..+. .+++.+++..+...|...+..+|..-+.. .+.|++++|+.
T Consensus 23 ~~lr~qY~~E~~--~-~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~-ykl~~Y~~Ar~ 98 (144)
T 1y8m_A 23 EILRQQVVSEGG--P-TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGC-YKLGEYSMAKR 98 (144)
T ss_dssp HHHHHHHHHTTS--T-TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHH-HTTTCHHHHHH
T ss_pred HHHHHHHHHhcc--C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH-HHhhhHHHHHH
Confidence 455555554322 1 22367899999999888765 46788899888887765444444333322 35789999999
Q ss_pred HHHHHHHhCCCcchHHHH
Q psy6461 610 IYERAIESLPEEPTRQMC 627 (703)
Q Consensus 610 ~~~~al~~~p~~~~~~~~ 627 (703)
..+.+|+..|++..+...
T Consensus 99 y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 99 YVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHH
Confidence 999999999988764333
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.46 E-value=0.76 Score=37.74 Aligned_cols=89 Identities=9% Similarity=-0.041 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCh---HHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLA---RHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQ 609 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 609 (703)
...++.|++=+. ++.++...+.||..+.+..+. .+++.+++..++..|...+..+|..-+. ..+.|++++|+.
T Consensus 24 ~~l~~qy~~E~~---~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg-~yklgdY~~Ar~ 99 (134)
T 3o48_A 24 EILRQQVVSEGG---PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIG-CYKLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHTTG---GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-HHHHTCHHHHHH
T ss_pred HHHHHHHHHHhC---CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH-HHHhhhHHHHHH
Confidence 445555554332 222357888999888887754 4678888888887775544334333232 235789999999
Q ss_pred HHHHHHHhCCCcchHH
Q psy6461 610 IYERAIESLPEEPTRQ 625 (703)
Q Consensus 610 ~~~~al~~~p~~~~~~ 625 (703)
..+.+|+..|++..+.
T Consensus 100 y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 100 YVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHTTCTTCHHHH
T ss_pred HHHHHHhhCCCCHHHH
Confidence 9999999999887643
No 238
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.31 E-value=0.3 Score=54.89 Aligned_cols=123 Identities=14% Similarity=0.053 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhh-----ccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh--CCCcchHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATG-----AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQ 625 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 625 (703)
..+..+.+.+.+.|+.++|..+|+...+ ..|+ +..|+..|.-+++.|++++|..+|+++.+. .|| +.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD---vv 201 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD---LL 201 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc---HH
Confidence 4788899999999999999999987543 2344 568999999999999999999999999886 354 33
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHhcc-cCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 626 MCLKFAEMETKLGE-IDRARAIYAHCSQI-CDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 626 ~~~~~a~~~~~~g~-~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
.+..+++.+.+.|+ .++|..+++...+. +.|+ ..+++... +.++-..++++.|++.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD--~vtY~~ll-------~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ--ALFTAVLL-------SEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSH--HHHHHSCC-------CHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCC--hhhccccc-------ChhhHHHHHHHHHHhC
Confidence 68888888888898 47899999998765 2333 44444322 3344445666666654
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.51 E-value=2.5 Score=42.55 Aligned_cols=94 Identities=15% Similarity=-0.037 Sum_probs=64.4
Q ss_pred CCCChhHHHHHHHHHHHhCCC----cchHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc----Ccc-hHHHHHHHHHHHH
Q psy6461 528 GGTKLERARDLFEQCLEACPP----RYAKTLYLLYAKLEEEHGLARHAMAVYERATGAV----LPE-EMFEMFNIYIKKA 598 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~-~~~~~~~~~~~~~ 598 (703)
..|++.+|.+++.+.++.+.. ....++++.-++++...|++.+++..+.+|.... +++ ....+...-+.+.
T Consensus 111 ~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~ 190 (394)
T 3txn_A 111 DTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILH 190 (394)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHH
Confidence 367889998888888876433 1124677888888888899999999998886543 221 1223333344444
Q ss_pred H-HhcCchHHHHHHHHHHHhCCCc
Q psy6461 599 A-EIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 599 ~-~~~~~~~A~~~~~~al~~~p~~ 621 (703)
. ..+++..|...|-.+++.+.+.
T Consensus 191 l~~~rdyk~A~~~F~eaf~~f~~~ 214 (394)
T 3txn_A 191 AADERDFKTAFSYFYEAFEGFDSV 214 (394)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCHHHHHHHHHHHHhccccc
Confidence 5 5788899998888888876643
No 240
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.49 E-value=0.33 Score=54.59 Aligned_cols=100 Identities=10% Similarity=-0.035 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-----hCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE-----ACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 512 ~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
....+..++..++.. |++++|..+|..+.+ ..|+ ...|..++.-+.+.|+.++|..+|+......-..+
T Consensus 126 ~~~TynaLIdglcK~---G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLT---DQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 456788888877764 789999999988654 2455 57899999999999999999999999876542211
Q ss_pred HHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhC
Q psy6461 587 MFEMFNIYIKKAAEIYGI-PKTRQIYERAIESL 618 (703)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~ 618 (703)
...|+..|..+.+.|+. ++|..+|+.+....
T Consensus 200 -vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 200 -LLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp -HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 56888999988888875 68899999999874
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.34 E-value=0.41 Score=52.60 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHhhc--------cCcch--------HHHHHHHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHG-LARHAMAVYERATGA--------VLPEE--------MFEMFNIY 594 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~--------~p~~~--------~~~~~~~~ 594 (703)
.+.|+.++++..+..|... ......+..+....+ .--+|++++.++++. .+.+. ...+...=
T Consensus 265 ~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 4889999999999999752 112222322222222 233566666666542 11111 12244455
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 595 IKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
..|++..|+++-|..+.++|+...|+... .|..++.+|..+|+++.|.-.+..|
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~--tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFE--SWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhH--HHHHHHHHHHHhccHHHHHHHHhcC
Confidence 67777889999999999999999999876 8999999999999999999998877
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.31 E-value=2.2 Score=48.06 Aligned_cols=97 Identities=9% Similarity=-0.016 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|+++.|.++.+ ..+++..|..++......++++.|.+.|.++=. +..+..++...|+.+...++-
T Consensus 666 ~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 666 GQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp TCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHH
Confidence 44554544432 235677777777777777777777777776411 333444444455554443333
Q ss_pred HHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHh
Q psy6461 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYI 199 (703)
Q Consensus 166 ~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~ 199 (703)
+.+... . ....-...+...|++++|+++|.+.
T Consensus 731 ~~a~~~-~-~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETT-G-KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHT-T-CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHc-C-chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333321 1 1112223344566666666666554
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.16 E-value=3.5 Score=46.37 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=65.2
Q ss_pred HhccChHHHHH-HHHHHHHhCC-cccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHH
Q psy6461 117 MDQHKITQTRH-VFDRALRALP-ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194 (703)
Q Consensus 117 ~~~~~~~~A~~-~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~ 194 (703)
...+++++|.+ ++ ...| . ......+.++...|.++.|.+..+ +...-..+....|++++|.+
T Consensus 610 ~~~~~~~~a~~~~l----~~i~~~----~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVL----PNVEGK----DSLTKIARFLEGQEYYEEALNISP--------DQDQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTG----GGCCCH----HHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHH----hcCCch----HHHHHHHHHHHhCCChHHheecCC--------CcchheehhhhcCCHHHHHH
Confidence 34677777655 33 1123 2 112666777778888887776542 22233556678899998887
Q ss_pred HHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHH
Q psy6461 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDI 274 (703)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 274 (703)
+...+ .....|..+|..+.+.++++.|...
T Consensus 674 ~~~~~--------------------------------------------------~~~~~W~~la~~al~~~~~~~A~~~ 703 (814)
T 3mkq_A 674 LLTDE--------------------------------------------------SAEMKWRALGDASLQRFNFKLAIEA 703 (814)
T ss_dssp HHTTC--------------------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhh--------------------------------------------------CcHhHHHHHHHHHHHcCCHHHHHHH
Confidence 75432 1136899999999999999999999
Q ss_pred HHHH
Q psy6461 275 YEEA 278 (703)
Q Consensus 275 ~~~~ 278 (703)
|.++
T Consensus 704 y~~~ 707 (814)
T 3mkq_A 704 FTNA 707 (814)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9984
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.84 E-value=1.7 Score=40.60 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=83.7
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchH-HHHHHHHHHHHHHhcCchH
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEM-FEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~~ 606 (703)
..++++++++.....++.+|.+ ......+.+++.-.|++++|.+-++-+.+.+|.... ..+|...|..+..
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~d--a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~------ 80 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA------ 80 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH------
T ss_pred hCCCHHHHHHHHHHHHHhCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH------
Confidence 5678899999999999999999 679999999999999999999999999999998642 2344555544432
Q ss_pred HHHHHHHHHH-----hCCCcchHHHHHH---HHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 607 TRQIYERAIE-----SLPEEPTRQMCLK---FAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 607 A~~~~~~al~-----~~p~~~~~~~~~~---~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
|. +.+. ..+..+. -|+. -+......|+.++|..+-.+|.+..|.
T Consensus 81 -R~---~vfaG~~~P~~~g~~~--~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 81 -RK---DFAQGAATAKVLGENE--ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -HH---HHTTSCCCEECCCSCH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -HH---HHHcCCCCCCCCCCCH--HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 21 1221 1233333 3443 234445679999999999999887543
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.80 E-value=0.4 Score=41.18 Aligned_cols=50 Identities=12% Similarity=0.103 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHhccChHHHHHHHHHHHHh
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP---------RIWLDYGRFLMDQHKITQTRHVFDRALRA 135 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 135 (703)
+.|+.|+-+.+.++....+++ .+...+|+.++.++++.+|...|++||+.
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 789999999988777643222 46778899999999999999999999875
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.51 E-value=0.9 Score=37.30 Aligned_cols=91 Identities=5% Similarity=-0.091 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccC---hHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHK---ITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
.+....++.|++-+.-.| ++...+.|+-.+....+ ...+..+++..++..|.. ....+..++--+.+.|++++|+
T Consensus 21 eeL~~l~~qy~~E~~~~v-s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 21 QQLEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp HHHHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHH
Confidence 455566777766443334 78999999998888654 457899999999988842 3444444455555899999999
Q ss_pred HHHHHHHhhCCCCHHH
Q psy6461 163 RVFRRYLKLFPEDAED 178 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~ 178 (703)
+..+..|+..|++..+
T Consensus 99 ~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 99 RYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHTTCTTCHHH
T ss_pred HHHHHHHhhCCCCHHH
Confidence 9999999999999753
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.95 E-value=1.3 Score=48.77 Aligned_cols=123 Identities=8% Similarity=0.007 Sum_probs=84.2
Q ss_pred HHHHhh-cCc-hhHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh-------cC-CC
Q psy6461 37 YIEHKK-NAP-KAIINTIYERSLKELPGSYKLW-YNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF-------MH-KM 105 (703)
Q Consensus 37 ~~~~~~-~~~-~~~a~~~~e~al~~~P~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p-~~ 105 (703)
+..+.. .++ .+.|...+++..+.+|....+- ..++... ... ..+--+|..+..++++. .| .+
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~-~~~------~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITIL-DHI------ETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-TTC------GGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH-HHh------hhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 344444 555 5889999999999999654332 2222221 110 01223456666666532 12 21
Q ss_pred ----------HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHH
Q psy6461 106 ----------PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168 (703)
Q Consensus 106 ----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 168 (703)
..+....+.|+.+.|+++.|..+-++|+...|. .-..|..++.+|...|+++.|+-.+...
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD--SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 235556688888999999999999999999995 4788999999999999999998776654
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.83 E-value=7.5 Score=33.85 Aligned_cols=96 Identities=5% Similarity=-0.064 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|+++.|..+.+.. +++.-|..++...+.+|+++-|.+.|.++ . -+..+.-++...|+.+.-.++-
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~----~------D~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ----H------SFDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT----T------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh----C------CHHHHHHHHHHhCCHHHHHHHH
Confidence 7788888876654 67899999999999999999998888873 1 1444444555667765554444
Q ss_pred HHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHH
Q psy6461 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAY 198 (703)
Q Consensus 166 ~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~ 198 (703)
+.+.... ....-...+.-.|++++++.+|.+
T Consensus 84 ~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRE--DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443322 111222233456777777766644
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.63 E-value=2.9 Score=35.91 Aligned_cols=110 Identities=17% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHhCCCChhHHHHHHHHHHHhC---CCcch----HHHHHHHHHHHHHcCChHHHHHHHHHHhhcc---CcchHHHHHHHH
Q psy6461 525 SRYGGTKLERARDLFEQCLEAC---PPRYA----KTLYLLYAKLEEEHGLARHAMAVYERATGAV---LPEEMFEMFNIY 594 (703)
Q Consensus 525 ~~~~~~~~~~A~~~~~~al~~~---p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~ 594 (703)
..+..+.++.|.-+...++... |+-.+ ..+...+|+.+...|+|.+|...|++|++.. ++...... -
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~---~ 105 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP---S 105 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc---c
Confidence 3334566777777777766543 33111 1366777777778888888888888876543 22211000 0
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 595 IKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
. +. ..-....... +. ..++-...+.++.+.|+++.|+.+++..
T Consensus 106 ~------~~----~ss~p~s~~~-~~--e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 T------GN----SASTPQSQCL-PS--EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------------CC-CC--HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred c------cc----cCCCcccccc-cc--hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0 00 0000000001 11 2346677888999999999999998763
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.45 E-value=6.8 Score=32.57 Aligned_cols=56 Identities=5% Similarity=-0.091 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF 588 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 588 (703)
..++..+++..++..|..- .+....+|--+.+.|++++|++..+..++..|.+...
T Consensus 58 i~~GI~LLe~l~~~~~~~~-RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRR-RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 4788999999999888652 3555666666789999999999999999999998443
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.56 E-value=5.6 Score=40.17 Aligned_cols=99 Identities=8% Similarity=0.030 Sum_probs=59.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGSY------KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~------~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
.++.+.|...+++|+......+ ..|..-.... ....+- .+...++..+
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~----------------l~~~~~----------~a~~~~~~~~ 181 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATA----------------LVEDKV----------LAHTAKAEAE 181 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHH----------------HHHHHH----------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH----------------HHHHHH----------HHHHHHHHHH
Confidence 5788888999999988764321 1232211100 111111 1223455666
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 169 (703)
...|+.+++...+.+++..+| .+..+|..+...+...|+..+|+..|++.-
T Consensus 182 l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 667777777777777777777 346677777777777777777777776653
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.47 E-value=4 Score=38.16 Aligned_cols=126 Identities=13% Similarity=0.016 Sum_probs=82.8
Q ss_pred HHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhH
Q psy6461 402 YEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSI 481 (703)
Q Consensus 402 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 481 (703)
+.+.|++++|+...+..++..|.+. .+...+.++++-.|+++.|.+-++-+.+.+|... . ..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da----~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~----------~----~a 68 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL----------P----GA 68 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH----------H----HH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh----------H----HH
Confidence 3468899999999999999999997 8889999999999999999999999999999741 0 12
Q ss_pred HHHHHHHHHHHhcCChhHHHh-HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 482 KLWSLYADLEESFGTFKAYEK-GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~e~-al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
.+|...+..+....++ |.- +...+. ....-|...+..+......|+.++|..+-.++++..|..
T Consensus 69 ~~yr~lI~aE~~R~~v--faG~~~P~~~--g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 69 SQLRHLVKAAQARKDF--AQGAATAKVL--GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHHHHHHHHHH--TTSCCCEECC--CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHH--HcCCCCCCCC--CCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 3344444443322111 000 000111 122336666655554444567777777777777776554
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.71 E-value=9.5 Score=38.45 Aligned_cols=79 Identities=6% Similarity=-0.114 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc----CCCCChHhHHHHHH
Q psy6461 593 IYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC----DPRVTAGFWAAWKS 668 (703)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~ 668 (703)
..+......|+++++.....+++..+|-+.. +|..+...+.+.|+..+|...|+++.+.. .-+..+.+-..+..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~--~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREP--LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445556689999999999999999998765 88888899999999999999999986642 11223777777777
Q ss_pred HHHHc
Q psy6461 669 FEITH 673 (703)
Q Consensus 669 ~~~~~ 673 (703)
+....
T Consensus 254 il~~~ 258 (388)
T 2ff4_A 254 ILRQQ 258 (388)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 66544
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.38 E-value=40 Score=39.56 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=39.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 397 EFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 397 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
.++..+...|.++-++.+.. ..|.++ ..-+..|.+++..|++++|...|.+|-.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~----~~~~~~----~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIG----WLNSDP----IAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHH----HSCCCH----HHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhHHHHHHHhh----hccCCc----HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 34555667777777766433 345565 3457788999999999999999998754
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.06 E-value=2.4 Score=44.01 Aligned_cols=104 Identities=6% Similarity=0.009 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCChHH----------HHHHHHHHhh----ccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh
Q psy6461 552 KTLYLLYAKLEEEHGLARH----------AMAVYERATG----AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES 617 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~----------A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (703)
..+|..|+.++...|+... .+..+-.+++ .........+++..+..+...+.+++|..+..++-
T Consensus 181 ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-- 258 (523)
T 4b4t_S 181 AKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-- 258 (523)
T ss_dssp ----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--
Confidence 4588888888887776654 2333333332 22333456688888888888899999999999884
Q ss_pred CCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 618 LPEE-----PTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 618 ~p~~-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+|.+ ......+..|++..-.+++.+|...+..|+..+|++
T Consensus 259 fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 259 YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 6643 123345566888889999999999999999988765
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.06 E-value=5.6 Score=40.85 Aligned_cols=102 Identities=5% Similarity=0.003 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc-hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC--cchH--HHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE--EPTR--QMC 627 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~--~~~ 627 (703)
.++..+|.++.+.|++++|.+.|.++....... ....++...+..+...+++..+...+.++-..... ++.. .+-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367889999999999999999999888765432 35677777888888888999999999988665322 2221 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 628 LKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 628 ~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
...+.+....+++..|-..|-.+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 444555667888999888887776653
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.45 E-value=13 Score=38.02 Aligned_cols=108 Identities=11% Similarity=0.160 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
..++..+|++|.+.|+++.|.+.|.++...+.+...-..++.....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~ir---------------------------------- 176 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIAR---------------------------------- 176 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHH----------------------------------
Confidence 3468899999999999999999999988866544322222211111
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
+.+..++...+...+.++-........+.....+....|.++...+++..|
T Consensus 177 -----------------------------l~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~A 227 (429)
T 4b4t_R 177 -----------------------------LGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEA 227 (429)
T ss_dssp -----------------------------HHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHH
T ss_pred -----------------------------HHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHH
Confidence 111226666677777766544332221111223344445556678999999
Q ss_pred HHHHHHhhccC
Q psy6461 412 RLIFDKATLVP 422 (703)
Q Consensus 412 ~~~~~~al~~~ 422 (703)
...|-.++...
T Consensus 228 a~~f~e~~~t~ 238 (429)
T 4b4t_R 228 AKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHhccC
Confidence 99998887663
No 258
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=78.46 E-value=33 Score=29.80 Aligned_cols=124 Identities=6% Similarity=-0.071 Sum_probs=82.1
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.|+++.|.+..+.. ++...|..+++..+.+ |+++-|...|.++ ++.. .+.-++...|+.
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~--------gn~~lAe~cy~~~-----~D~~---~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQ--------GNASLAEMIYQTQ-----HSFD---KLSFLYLVTGDV 76 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHT--------TCHHHHHHHHHHT-----TCHH---HHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHc--------CChHHHHHHHHHh-----CCHH---HHHHHHHHhCCH
Confidence 68899998887765 7899999999987765 8899999888876 2221 223334446888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHh
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYI 199 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~ 199 (703)
+.-.++-+.+....- ++.....+.-.|+.++++++|.+.=+. ..-+-+....|--+.|..+.+.+
T Consensus 77 e~L~kla~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~~~r~-----~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAEGGSL-----PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHTTCH-----HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHHCCCh-----HHHHHHHHHcCcHHHHHHHHHHh
Confidence 888877777765332 444444555679999999988764221 11122233456666666666554
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.29 E-value=25 Score=36.12 Aligned_cols=99 Identities=7% Similarity=0.008 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh----ccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHH---hCCCcch--H
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATG----AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIE---SLPEEPT--R 624 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~--~ 624 (703)
+...++.++...|++.+|..++..... ..+....+.++..-+..+...+++.+|+.++.++-. ..+..+. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 334555555555666665555554431 112222334444444444445555555555555432 1222221 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 625 QMCLKFAEMETKLGEIDRARAIYAHCSQ 652 (703)
Q Consensus 625 ~~~~~~a~~~~~~g~~~~A~~~~~~a~~ 652 (703)
.+....+.+....+++.+|-+.|..+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1333444455555555555555555543
No 260
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=64.47 E-value=38 Score=35.18 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
..+.+|.+..-......|+..|.+|..+.|.+- ..++++|.+....|+.-+|.-.|-|++.....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G----~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P 218 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----QPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC----chHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence 456667777777788899999999999988886 88999999888888888888888888866443
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.02 E-value=1.6e+02 Score=31.55 Aligned_cols=112 Identities=4% Similarity=-0.061 Sum_probs=59.3
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
.-|+.|..+.. .+.... ..+...++..|+.+.....-..++..... .+++......|.+ .|.+....+
T Consensus 38 ~~yl~y~~l~~~l~~~~~--~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~-----~~~w~~~l~~~~~----~p~~~~~~c 106 (618)
T 1qsa_A 38 YPYLEYRQITDDLMNQPA--VTVTNFVRANPTLPPARTLQSRFVNELAR-----REDWRGLLAFSPE----KPGTTEAQC 106 (618)
T ss_dssp HHHHHHHHHHHTGGGCCH--HHHHHHHHHCTTCHHHHHHHHHHHHHHHH-----TTCHHHHHHHCCS----CCSSHHHHH
T ss_pred HHHHHHHHHHhCcccCCH--HHHHHHHHHCCCChhHHHHHHHHHHHHHh-----CCCHHHHHHhccC----CCCCHHHHH
Confidence 44555544443 222222 26677778888887665444444332211 1334444443332 367778888
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcC
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA 156 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 156 (703)
.++......|+..+|.....++-.... ..+.....+.......|
T Consensus 107 ~~~~A~~~~G~~~~a~~~~~~lW~~~~--~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 107 NYYYAKWNTGQSEEAWQGAKELWLTGK--SQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHSCSS--CCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHCC
Confidence 888888888887766666665544222 23444444444444334
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.88 E-value=1.5e+02 Score=30.21 Aligned_cols=31 Identities=3% Similarity=0.009 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLV 421 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 421 (703)
...+......++...|+++.....+.-..+.
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566677788888889998887777655544
No 263
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=59.08 E-value=40 Score=35.03 Aligned_cols=65 Identities=3% Similarity=-0.045 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFV 152 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 152 (703)
..+..|+..|.+|+...|++...+..+|.+....|+.-+|.=.|-|+|.... ..+..+..+..+.
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~--Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF--PFPAASTNLQKAL 230 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCC--CChhHHHHHHHHH
Confidence 3456677777777777777777777777777777777777777777776432 3345555554444
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.90 E-value=65 Score=33.41 Aligned_cols=112 Identities=13% Similarity=-0.010 Sum_probs=63.3
Q ss_pred CCCcHHHHHHHHhhhc--CCch----------hHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 350 NPHNVLEWHKRVRLFD--GKPL----------DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDK 417 (703)
Q Consensus 350 ~p~~~~~~~~~~~~~~--~~~~----------~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 417 (703)
++-+...|+-+..+.+ |+.. ..+..+-.++++-...........++..+.+.|...+.++.|..+..+
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 3445566665555433 3322 134444444444222111223467888889999999999999999999
Q ss_pred hhccCCCC-c--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 418 ATLVPYTK-V--EDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 418 al~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
+. +|.+ . .......+-+|++..-++++.+|...+..|+..+|.+
T Consensus 257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 85 4432 1 1223445556788888999999999999999998864
No 265
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=54.15 E-value=63 Score=26.65 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 589 EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..+..-++..-..|.-|+-.+++...+...|-+|. +.+..+..+.+.|+..+|..++.+|.+.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~--~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSAS--ILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChH--HHHHHHHHHHHhcchhhHHHHHHHHHHh
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=52.90 E-value=2.4e+02 Score=30.14 Aligned_cols=208 Identities=11% Similarity=0.060 Sum_probs=98.4
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHH
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL 483 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
..++.+.|...+....+...-+......++..++.-....+...++...+.+.....++ ..+
T Consensus 226 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 287 (618)
T 1qsa_A 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS------------------TSL 287 (618)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC------------------HHH
T ss_pred HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC------------------hHH
Confidence 34477788888776644332233222223333332223344245566666665544433 222
Q ss_pred HHHHHHHHHhcCChhHHHhHhhcCCCCc-hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 484 WSLYADLEESFGTFKAYEKGIALFKWPY-IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLE 562 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~e~al~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 562 (703)
..-.+....+.|+.....+.+..++... ...-|..+....... .|+.++|+.+|+++.. +.+ .|-.++.
T Consensus 288 ~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~--~g~~~~a~~~~~~~a~--~~~----fYg~lAa-- 357 (618)
T 1qsa_A 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE--RGREAEAKEILHQLMQ--QRG----FYPMVAA-- 357 (618)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH--TTCHHHHHHHHHHHHT--SCS----HHHHHHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHH--cCCHHHHHHHHHHHhc--CCC----hHHHHHH--
Confidence 2233334445577644445555444322 334444444433332 4677899999999875 332 3333332
Q ss_pred HHcCChHHHHHHHHHHhhccCcc-hHHH---HHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q psy6461 563 EEHGLARHAMAVYERATGAVLPE-EMFE---MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG 638 (703)
Q Consensus 563 ~~~g~~~~A~~~~~~al~~~p~~-~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 638 (703)
.+.|..-.. . .....+.. ..+. .+. -+......|....|+..+...+...+. . -....+.+....|
T Consensus 358 ~~Lg~~~~~----~-~~~~~~~~~~~~~~~~~~~-r~~~L~~~g~~~~a~~ew~~~~~~~~~--~--~~~~la~~a~~~~ 427 (618)
T 1qsa_A 358 QRIGEEYEL----K-IDKAPQNVDSALTQGPEMA-RVRELMYWNLDNTARSEWANLVKSKSK--T--EQAQLARYAFNNQ 427 (618)
T ss_dssp HHTTCCCCC----C-CCCCCSCCCCHHHHSHHHH-HHHHHHHTTCHHHHHHHHHHHHTTCCH--H--HHHHHHHHHHHTT
T ss_pred HHcCCCCCC----C-CCCCChhHHhhhccChHHH-HHHHHHHCCChhhHHHHHHHHHhcCCH--H--HHHHHHHHHHHCC
Confidence 233421000 0 00000100 0000 111 122234567888888888887765331 1 2345566666777
Q ss_pred CHHHHHHHHHH
Q psy6461 639 EIDRARAIYAH 649 (703)
Q Consensus 639 ~~~~A~~~~~~ 649 (703)
..+.++....+
T Consensus 428 ~~~~~v~~~~~ 438 (618)
T 1qsa_A 428 WWDLSVQATIA 438 (618)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 77766655443
No 267
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=51.60 E-value=2.3 Score=43.48 Aligned_cols=150 Identities=9% Similarity=0.042 Sum_probs=79.5
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc--Ccch----HHHHHHHHHHHHHHhc
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAV--LPEE----MFEMFNIYIKKAAEIY 602 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~~~~~~~~~~~~~~~ 602 (703)
.|-+++..++++.++....-+ .-++..+|-++.+. .+++-+.-++-..+.. |+-. ...+|....-.+..-.
T Consensus 242 ~G~f~ELIsLlEaglglErAH--mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~yd 318 (624)
T 3lvg_A 242 RGYFEELITMLEAALGLERAH--MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 318 (624)
T ss_dssp TCCCTTSTTTHHHHTTSTTCC--HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcch
Confidence 577888888999988776666 33666777666544 5555555444322211 2110 1246665555555544
Q ss_pred CchHHHH-------------HHHHHHHhCCCcchHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHhcc-
Q psy6461 603 GIPKTRQ-------------IYERAIESLPEEPTRQMCLKFAEMET---------------KLGEIDRARAIYAHCSQI- 653 (703)
Q Consensus 603 ~~~~A~~-------------~~~~al~~~p~~~~~~~~~~~a~~~~---------------~~g~~~~A~~~~~~a~~~- 653 (703)
.+|.|.. .|...+.+-++ .+++..-+.|+. ..=+..++.+++++.-.+
T Consensus 319 E~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN---~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~Lp 395 (624)
T 3lvg_A 319 EYDNAIITMMNHPTDAWKEGQFKDIITKVAN---VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLP 395 (624)
T ss_dssp CHHHHHHTTTSCHHHHCCGGGGTTTGGGCSC---SHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGG
T ss_pred hHHHHHHHHHhCChhhccHHHHHHHHHHcch---HHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCch
Confidence 5554421 11111111111 113333333332 223455666666665322
Q ss_pred --------cCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 654 --------CDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 654 --------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
..+.++..+=+.+-++.-..++++..+..++
T Consensus 396 LIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId 434 (624)
T 3lvg_A 396 LVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 434 (624)
T ss_dssp GGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTS
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 2344567788888888888888777766543
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=50.04 E-value=35 Score=24.57 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHH
Q psy6461 256 NSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVF 292 (703)
Q Consensus 256 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~ 292 (703)
..+|+.+...|+.++|...|-+|+..+|.+.++..+|
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678889999999999999999999999877655444
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.07 E-value=1.4e+02 Score=34.78 Aligned_cols=133 Identities=10% Similarity=-0.010 Sum_probs=77.6
Q ss_pred HHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch---------------------HHHHHHHHHHHHHHh
Q psy6461 543 LEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE---------------------MFEMFNIYIKKAAEI 601 (703)
Q Consensus 543 l~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------------~~~~~~~~~~~~~~~ 601 (703)
+..+|.+. -.....|.++...|++++|...|++|-.....+. ....|...+....+.
T Consensus 835 ~~~~~~~~--~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~ 912 (1139)
T 4fhn_B 835 IGWLNSDP--IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE 912 (1139)
T ss_dssp HHHSCCCH--HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHT
T ss_pred hhhccCCc--HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHc
Confidence 45567763 3457789999999999999999998853321110 011233333344455
Q ss_pred cCchHHHHHHHHHHHhCCCc-ch--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHH
Q psy6461 602 YGIPKTRQIYERAIESLPEE-PT--RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDT 678 (703)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~-~~--~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 678 (703)
+.++.+.+....|++..+.+ +. ..+|...-......|++++|...+-+. .+.+........+..-.-..|..+.
T Consensus 913 ~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~---pd~~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 913 SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL---STTPLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH---HHSSSCHHHHHHHHHHHHHHCCHHH
T ss_pred CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhCCChhh
Confidence 67777777777777765422 21 225666666666777777776666432 1223345555555544444555544
Q ss_pred HH
Q psy6461 679 MR 680 (703)
Q Consensus 679 ~~ 680 (703)
.-
T Consensus 990 L~ 991 (1139)
T 4fhn_B 990 LL 991 (1139)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=37.34 E-value=76 Score=22.78 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 434 CEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 434 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
..+|+.+...|+.++|...|-+|+..+|..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 345666667777777777777777777764
No 271
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.88 E-value=1.7e+02 Score=24.84 Aligned_cols=59 Identities=5% Similarity=-0.017 Sum_probs=42.9
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHH------HHHHcCCHHHHHHHHHHHhc
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAE------LELRAGQEEAALRLMARATA 458 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~A~~~~~~a~~ 458 (703)
+..++..|++=+|-++++.+.+..+... .-..+|..+++ ...+.||...|..++.+|+.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~-~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGN-TESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4445566999999999999998865431 01245555555 34568999999999999975
No 272
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=36.75 E-value=58 Score=24.78 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHH
Q psy6461 256 NSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVF 292 (703)
Q Consensus 256 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~ 292 (703)
..+|..+...|+++.|...|-+++..+|.+.++..+|
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678888999999999999999999998776554443
No 273
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.72 E-value=60 Score=28.91 Aligned_cols=24 Identities=0% Similarity=0.119 Sum_probs=12.2
Q ss_pred HHHHHhccChHHHHHHHHHHHHhC
Q psy6461 113 GRFLMDQHKITQTRHVFDRALRAL 136 (703)
Q Consensus 113 ~~~~~~~~~~~~A~~~~~~al~~~ 136 (703)
..++++.|.+++|.+++++.+...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHhcchHHHHHHHHHHhcCC
Confidence 334445555555555555555533
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.95 E-value=4.5e+02 Score=29.79 Aligned_cols=98 Identities=7% Similarity=-0.018 Sum_probs=61.2
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHH-hCCC
Q psy6461 542 CLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIE-SLPE 620 (703)
Q Consensus 542 al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~ 620 (703)
.+.-+|.+.. .-...|.++...|++++|...|++|-.-...+... ...++ . ....+. ..++
T Consensus 832 L~~~~~~t~~--~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~-------------~~~~~--~-~~~ll~~~e~~ 893 (950)
T 4gq2_M 832 LIGWLNSDPI--AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ-------------FAVLR--E-FQEIAEKYHHQ 893 (950)
T ss_dssp HGGGCCSSHH--HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCS-------------CGGGH--H-HHHHHHHTTTC
T ss_pred HHhhcCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccc-------------ccchh--h-hhhccCccccc
Confidence 4566777732 34668899999999999999999886433211000 00000 0 001111 1122
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 621 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
......+.+.+.+..+.|-++-+..+-+.|++..+++
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~d 930 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD 930 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Confidence 2233477788889999999999999999999876554
No 275
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=32.77 E-value=40 Score=24.97 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=13.2
Q ss_pred HcCCHHHHHHHHHHHhcc
Q psy6461 636 KLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 636 ~~g~~~~A~~~~~~a~~~ 653 (703)
+.|++++|...|..|++.
T Consensus 31 ~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 577788888888777664
No 276
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=32.48 E-value=2.4e+02 Score=24.21 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=49.3
Q ss_pred HHHHHHcCChHHHHHHHHHhh--ccC--C----------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 399 GKFYEVNDQLEDARLIFDKAT--LVP--Y----------TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al--~~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
+-++...+++..|+..++..+ +++ | -++.+-+..+..+|.+..+.|+.++|+..|.+...+.|-
T Consensus 69 ~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 69 SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 456678899999999999988 332 2 123334567888888888999999999999998888775
No 277
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=30.70 E-value=45 Score=24.68 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=11.7
Q ss_pred HcCCHHHHHHHHHHHhcc
Q psy6461 636 KLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 636 ~~g~~~~A~~~~~~a~~~ 653 (703)
+.|++++|..+|..|++.
T Consensus 23 ~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 466777777777666553
No 278
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=29.25 E-value=19 Score=37.07 Aligned_cols=84 Identities=11% Similarity=0.177 Sum_probs=54.3
Q ss_pred HHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCCCcccccchhhHHH
Q psy6461 398 FGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATAT--PARPVAYHDEAETVQA 475 (703)
Q Consensus 398 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 475 (703)
+...|+..|-+++-+.+++.++....-+. .++..+|-+|.+. ++++-++.++---.. .|+-+ ...
T Consensus 235 lv~~YE~~G~f~ELIsLlEaglglErAHm----GmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi-------rac- 301 (624)
T 3lvg_A 235 LINYYQDRGYFEELITMLEAALGLERAHM----GMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL-------RAA- 301 (624)
T ss_dssp GGSSSSTTCCCTTSTTTHHHHTTSTTCCH----HHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH-------HHH-
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCCCchhH----HHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH-------HHH-
Confidence 35677889999999999999998876676 8888888877655 566666655432111 12211 000
Q ss_pred HHHhhHHHHHHHHHHHHhcCCh
Q psy6461 476 RVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
-...+|....-++....++
T Consensus 302 ---E~ahLW~ElvfLY~~ydE~ 320 (624)
T 3lvg_A 302 ---EQAHLWAELVFLYDKYEEY 320 (624)
T ss_dssp ---TTTTCHHHHHHHHHHHTCH
T ss_pred ---HHHhhHHHHHHHHhcchhH
Confidence 1246677777777666554
No 279
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=26.75 E-value=4.2e+02 Score=25.25 Aligned_cols=155 Identities=10% Similarity=0.011 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh----CCCcchHHHHHHHHHHHHHcCCh--HHHHHHHHHHhhccCc
Q psy6461 511 YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA----CPPRYAKTLYLLYAKLEEEHGLA--RHAMAVYERATGAVLP 584 (703)
Q Consensus 511 ~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~a~~~~~~g~~--~~A~~~~~~al~~~p~ 584 (703)
...++...|-..+.+....+++++|++++..+... .....+..+-+.+..++.+.+.. ++.+.-+-+.+..+|.
T Consensus 28 ~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 28 DYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444443333333455666666665554443 11112234445555555554432 3334444444444443
Q ss_pred chHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh---CC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCC
Q psy6461 585 EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES---LP--EEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVT 659 (703)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p--~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 659 (703)
+.. .=.+...++++. .+ ...++.++...|..+.+.|++.+|+..|-.+-.- + .
T Consensus 108 ~~~------------------~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~-s---~ 165 (312)
T 2wpv_A 108 SEP------------------NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD-S---M 165 (312)
T ss_dssp TCT------------------THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH-H---H
T ss_pred CCc------------------hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc-c---H
Confidence 321 112334444432 11 1234558889999999999999999998643210 1 2
Q ss_pred hHhHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Q psy6461 660 AGFWAAWKSFEITH--GNEDTMREMLRIKRSV 689 (703)
Q Consensus 660 ~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~ 689 (703)
..+..-..++.... |...++.-.+ +|.|
T Consensus 166 ~~~a~~l~~w~~~~~~~~~~e~dlf~--~RaV 195 (312)
T 2wpv_A 166 IKYVDLLWDWLCQVDDIEDSTVAEFF--SRLV 195 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHH--HHHH
Confidence 22333333333344 7777765544 5554
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=23.76 E-value=73 Score=23.55 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy6461 159 ETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIV 200 (703)
Q Consensus 159 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~ 200 (703)
+.|+.+..++++.+ ..|++++|..+|..++
T Consensus 17 ~~Ai~lv~~Ave~D------------~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 17 EMARKYAINAVKAD------------KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHHHHH------------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------HhccHHHHHHHHHHHH
Confidence 56677777776553 6788888888888775
No 281
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.19 E-value=3.8e+02 Score=23.04 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
.+..+|.+....|+.++|+..|.+.....|-
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 4556666666666666666666666666553
No 282
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=20.29 E-value=99 Score=23.00 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=15.6
Q ss_pred HHcCCHHHHHHHHHHHhcc
Q psy6461 635 TKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 635 ~~~g~~~~A~~~~~~a~~~ 653 (703)
-..|++++|+..|..|++.
T Consensus 27 D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 4688899999999888765
Done!