Your job contains 1 sequence.
>psy6461
PESTGFTGIYTTENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKEL
PGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH
KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI
EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAII
RGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKR
VRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATL
VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKS
IKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE
QCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE
IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTA
GFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLFTFLH
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6461
(703 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E2RPV4 - symbol:XAB2 "Uncharacterized protein" ... 1152 1.4e-194 2
UNIPROTKB|J9PAI6 - symbol:XAB2 "Uncharacterized protein" ... 1152 1.4e-194 2
FB|FBgn0033859 - symbol:CG6197 species:7227 "Drosophila m... 1794 5.8e-185 1
DICTYBASE|DDB_G0277977 - symbol:xab2 "TPR-like helical do... 1108 2.3e-172 2
ZFIN|ZDB-GENE-040426-685 - symbol:xab2 "XPA binding prote... 1608 3.0e-165 1
UNIPROTKB|F1SCH5 - symbol:XAB2 "Uncharacterized protein" ... 1555 1.2e-159 1
UNIPROTKB|F6RY07 - symbol:XAB2 "Uncharacterized protein" ... 1554 1.6e-159 1
UNIPROTKB|F5H315 - symbol:XAB2 "Pre-mRNA-splicing factor ... 1550 4.1e-159 1
UNIPROTKB|Q9HCS7 - symbol:XAB2 "Pre-mRNA-splicing factor ... 1550 4.1e-159 1
MGI|MGI:1914689 - symbol:Xab2 "XPA binding protein 2" spe... 1547 8.6e-159 1
RGD|621217 - symbol:Xab2 "XPA binding protein 2" species:... 1547 8.6e-159 1
POMBASE|SPBC211.02c - symbol:cwf3 "complexed with Cdc5 pr... 910 2.2e-148 2
TAIR|locus:2184236 - symbol:AT5G28740 species:3702 "Arabi... 845 3.0e-144 2
WB|WBGene00016837 - symbol:C50F2.3 species:6239 "Caenorha... 1145 3.4e-116 1
UNIPROTKB|P91175 - symbol:C50F2.3 "Protein C50F2.3" speci... 1145 3.4e-116 1
ASPGD|ASPL0000052140 - symbol:AN0111 species:162425 "Emer... 938 3.0e-94 1
GENEDB_PFALCIPARUM|PFL1735c - symbol:PFL1735c "hypothetic... 358 7.4e-56 3
UNIPROTKB|Q8I564 - symbol:PFL1735c "RNA-processing protei... 358 7.4e-56 3
SGD|S000002824 - symbol:SYF1 "Member of the NineTeen Comp... 206 1.2e-39 3
CGD|CAL0005248 - symbol:orf19.2893 species:5476 "Candida ... 196 7.4e-33 4
UNIPROTKB|Q5A1C6 - symbol:SYF1 "Putative uncharacterized ... 196 7.4e-33 4
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 154 8.3e-18 3
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 172 7.6e-17 2
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 172 7.8e-17 2
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 168 1.1e-15 2
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 150 1.0e-14 2
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 160 1.0e-14 2
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 139 2.5e-14 2
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 136 2.8e-14 2
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 150 3.2e-14 2
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 146 7.9e-14 2
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 146 7.9e-14 2
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 147 2.0e-13 2
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 142 2.9e-13 3
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 137 1.2e-11 2
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 141 1.8e-11 2
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 125 1.5e-10 2
CGD|CAL0004743 - symbol:orf19.332 species:5476 "Candida a... 128 7.2e-09 3
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 142 2.4e-06 2
TAIR|locus:2007973 - symbol:CSTF77 species:3702 "Arabidop... 123 5.5e-06 2
SGD|S000004107 - symbol:CLF1 "Member of the NineTeen Comp... 109 6.3e-06 2
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 128 1.5e-05 2
GENEDB_PFALCIPARUM|PFD0180c - symbol:PFD0180c "CGI-201 pr... 135 2.5e-05 2
UNIPROTKB|Q8I1Z2 - symbol:PFD0180c "CGI-201 protein, shor... 135 2.5e-05 2
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein... 106 3.8e-05 2
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 119 9.0e-05 2
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 106 9.7e-05 2
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 106 9.7e-05 2
UNIPROTKB|E1C8G8 - symbol:PRPF39 "Uncharacterized protein... 98 0.00012 2
MGI|MGI:1351825 - symbol:Cstf3 "cleavage stimulation fact... 105 0.00012 2
FB|FBgn0039600 - symbol:CG1646 species:7227 "Drosophila m... 123 0.00013 2
UNIPROTKB|E2R479 - symbol:CSTF3 "Uncharacterized protein"... 105 0.00015 2
UNIPROTKB|Q12996 - symbol:CSTF3 "Cleavage stimulation fac... 105 0.00015 2
UNIPROTKB|Q5F4A0 - symbol:CSTF3 "Uncharacterized protein"... 105 0.00015 2
UNIPROTKB|E1BWJ0 - symbol:SART3 "Uncharacterized protein"... 124 0.00042 1
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 117 0.00058 2
>UNIPROTKB|E2RPV4 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0006351 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 KO:K12867 CTD:56949
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459 RefSeq:XP_542113.3
ProteinModelPortal:E2RPV4 Ensembl:ENSCAFT00000029071 GeneID:484995
KEGG:cfa:484995 OMA:RRYLMYD NextBio:20859059 Uniprot:E2RPV4
Length = 855
Score = 1152 (410.6 bits), Expect = 1.4e-194, Sum P(2) = 1.4e-194
Identities = 215/298 (72%), Positives = 252/298 (84%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASE 316
Score = 755 (270.8 bits), Expect = 1.4e-194, Sum P(2) = 1.4e-194
Identities = 160/352 (45%), Positives = 213/352 (60%)
Query: 351 PHNVLEWHKRVRLF-DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
PH + W + + D LD R E V K V L ++W E G+ ++ +
Sbjct: 394 PHTL--WVAFAKFYEDNGQLDDARIILEKATKVSFK-QVDDLASVWCECGELELRHENYD 450
Query: 410 DARLIFDKATLVPYTKVEDLATVWCEWAELEL-RAGQEEXXXXXXXXXXXXXXXXXXYHD 468
A + KAT +P + E E + + ++ + +D
Sbjct: 451 QALRLLRKATALPARRAEYFDG--SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD 508
Query: 469 EAETVQARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
++ + + ++++ + + F +FKAYE+GI+LFKWP + DIW+TYLTKF++RY
Sbjct: 509 RILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARY 568
Query: 528 GGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEM 587
GG KLERARDLFEQ L+ CPP+ GLARHAMAVYERAT AV P +
Sbjct: 569 GGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQ 628
Query: 588 FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME +LGEIDRARAIY
Sbjct: 629 YDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECRLGEIDRARAIY 688
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
+ CSQICDPR T FW WK FE+ HGNEDT+REMLRI+RSVQA YNTQV F
Sbjct: 689 SFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNF 740
Score = 446 (162.1 bits), Expect = 6.6e-162, Sum P(2) = 6.6e-162
Identities = 114/316 (36%), Positives = 164/316 (51%)
Query: 349 QNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408
QNPH+V EWHKRV L G+P +II TYTEAV+TVDP A GK HTLW+ F KFYE N QL
Sbjct: 352 QNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQL 411
Query: 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHD 468
+DAR+I +KAT V + +V+DLA+VWCE ELELR + Y D
Sbjct: 412 DDARIILEKATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFD 471
Query: 469 EAETVQARVYKSIKLWSLYADLEESFGTFKA----YEKGIAL-FKWPYIFDIWNTYLTKF 523
+E VQ RVYKS+K+WS+ ADLEES GTF++ Y++ + L P I + +L +
Sbjct: 472 GSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEH 531
Query: 524 LSRYGGTKL-ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLAR--HAMAVYERATG 580
K ER LF+ P +G + A ++E+A
Sbjct: 532 KYFEESFKAYERGISLFKW------PNVSDIWSTYLTKFIARYGGRKLERARDLFEQALD 585
Query: 581 AVLPEEMFEMFNIYIKKAAEIYGIPK-TRQIYERAIESLPEEPTRQ--MCLKFAEMETKL 637
P+ ++ +Y + E +G+ + +YERA ++ EP +Q M + + ++
Sbjct: 586 GCPPKYAKTLYLLYAQLEEE-WGLARHAMAVYERATRAV--EPAQQYDMFNIYIKRAAEI 642
Query: 638 GEIDRARAIYAHCSQI 653
+ R IY ++
Sbjct: 643 YGVTHTRGIYQKAIEV 658
Score = 94 (38.1 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
Identities = 57/293 (19%), Positives = 121/293 (41%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIY--ERSLKELPGS-YKLWYNYLKLR 74
Y + +P S + ++ Y++ +A + T+ ER + + S Y+LW+ L
Sbjct: 169 YRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLI 228
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLV-FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
Q KV + +V+ L F ++ ++W + + + R V++ A+
Sbjct: 229 -SQNPDKVQS----LNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAI 283
Query: 134 RA-LPITQHHRVWPLYLSFVKSH--AVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLD 190
R + + +V+ Y F +S A ETA + R + ED ++ + R +
Sbjct: 284 RTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGR--------EEEDDVDLELRLARFE 335
Query: 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250
+ + ++N S + + + W++ + P +I + +A+ + T +
Sbjct: 336 QLIGRRPLLLN--SVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGK 393
Query: 251 LGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL 303
LW + A +Y +G + AR I E+A T + + + + + EL L
Sbjct: 394 PHTLWVAFAKFYEDNGQLDDARIILEKA--TKVSFKQVDDLASVWCECGELEL 444
>UNIPROTKB|J9PAI6 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459
Ensembl:ENSCAFT00000044264 Uniprot:J9PAI6
Length = 799
Score = 1152 (410.6 bits), Expect = 1.4e-194, Sum P(2) = 1.4e-194
Identities = 215/298 (72%), Positives = 252/298 (84%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASE 316
Score = 755 (270.8 bits), Expect = 1.4e-194, Sum P(2) = 1.4e-194
Identities = 160/352 (45%), Positives = 213/352 (60%)
Query: 351 PHNVLEWHKRVRLF-DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
PH + W + + D LD R E V K V L ++W E G+ ++ +
Sbjct: 394 PHTL--WVAFAKFYEDNGQLDDARIILEKATKVSFK-QVDDLASVWCECGELELRHENYD 450
Query: 410 DARLIFDKATLVPYTKVEDLATVWCEWAELEL-RAGQEEXXXXXXXXXXXXXXXXXXYHD 468
A + KAT +P + E E + + ++ + +D
Sbjct: 451 QALRLLRKATALPARRAEYFDG--SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD 508
Query: 469 EAETVQARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
++ + + ++++ + + F +FKAYE+GI+LFKWP + DIW+TYLTKF++RY
Sbjct: 509 RILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARY 568
Query: 528 GGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEM 587
GG KLERARDLFEQ L+ CPP+ GLARHAMAVYERAT AV P +
Sbjct: 569 GGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQ 628
Query: 588 FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME +LGEIDRARAIY
Sbjct: 629 YDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECRLGEIDRARAIY 688
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
+ CSQICDPR T FW WK FE+ HGNEDT+REMLRI+RSVQA YNTQV F
Sbjct: 689 SFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNF 740
Score = 446 (162.1 bits), Expect = 6.6e-162, Sum P(2) = 6.6e-162
Identities = 114/316 (36%), Positives = 164/316 (51%)
Query: 349 QNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408
QNPH+V EWHKRV L G+P +II TYTEAV+TVDP A GK HTLW+ F KFYE N QL
Sbjct: 352 QNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQL 411
Query: 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHD 468
+DAR+I +KAT V + +V+DLA+VWCE ELELR + Y D
Sbjct: 412 DDARIILEKATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFD 471
Query: 469 EAETVQARVYKSIKLWSLYADLEESFGTFKA----YEKGIAL-FKWPYIFDIWNTYLTKF 523
+E VQ RVYKS+K+WS+ ADLEES GTF++ Y++ + L P I + +L +
Sbjct: 472 GSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEH 531
Query: 524 LSRYGGTKL-ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLAR--HAMAVYERATG 580
K ER LF+ P +G + A ++E+A
Sbjct: 532 KYFEESFKAYERGISLFKW------PNVSDIWSTYLTKFIARYGGRKLERARDLFEQALD 585
Query: 581 AVLPEEMFEMFNIYIKKAAEIYGIPK-TRQIYERAIESLPEEPTRQ--MCLKFAEMETKL 637
P+ ++ +Y + E +G+ + +YERA ++ EP +Q M + + ++
Sbjct: 586 GCPPKYAKTLYLLYAQLEEE-WGLARHAMAVYERATRAV--EPAQQYDMFNIYIKRAAEI 642
Query: 638 GEIDRARAIYAHCSQI 653
+ R IY ++
Sbjct: 643 YGVTHTRGIYQKAIEV 658
Score = 94 (38.1 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
Identities = 57/293 (19%), Positives = 121/293 (41%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIY--ERSLKELPGS-YKLWYNYLKLR 74
Y + +P S + ++ Y++ +A + T+ ER + + S Y+LW+ L
Sbjct: 169 YRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLI 228
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLV-FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
Q KV + +V+ L F ++ ++W + + + R V++ A+
Sbjct: 229 -SQNPDKVQS----LNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAI 283
Query: 134 RA-LPITQHHRVWPLYLSFVKSH--AVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLD 190
R + + +V+ Y F +S A ETA + R + ED ++ + R +
Sbjct: 284 RTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGR--------EEEDDVDLELRLARFE 335
Query: 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250
+ + ++N S + + + W++ + P +I + +A+ + T +
Sbjct: 336 QLIGRRPLLLN--SVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGK 393
Query: 251 LGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL 303
LW + A +Y +G + AR I E+A T + + + + + EL L
Sbjct: 394 PHTLWVAFAKFYEDNGQLDDARIILEKA--TKVSFKQVDDLASVWCECGELEL 444
>FB|FBgn0033859 [details] [associations]
symbol:CG6197 species:7227 "Drosophila melanogaster"
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 EMBL:AE013599 GO:GO:0006911 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW GeneTree:ENSGT00550000075140
EMBL:BT133178 RefSeq:NP_610891.1 UniGene:Dm.606 SMR:A1Z9G2
IntAct:A1Z9G2 STRING:A1Z9G2 EnsemblMetazoa:FBtr0087623 GeneID:36514
KEGG:dme:Dmel_CG6197 UCSC:CG6197-RA FlyBase:FBgn0033859
InParanoid:A1Z9G2 OrthoDB:EOG42FQZD GenomeRNAi:36514 NextBio:798953
Uniprot:A1Z9G2
Length = 883
Score = 1794 (636.6 bits), Expect = 5.8e-185, P = 5.8e-185
Identities = 354/641 (55%), Positives = 439/641 (68%)
Query: 16 EDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRR 75
ED+PYEEEILRN +SVKHWLRYI+HK AP +N +YER+LKELPGSYK+W+NYL+ RR
Sbjct: 18 EDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNGVNMVYERALKELPGSYKIWHNYLRTRR 77
Query: 76 KQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA 135
KQV+GK+ TDP YE+VN+ FER+LVFMHKMPRIW+DYG F+ Q KIT+TRHVFDRALRA
Sbjct: 78 KQVRGKIPTDPMYEEVNSAFERALVFMHKMPRIWMDYGAFMTSQCKITRTRHVFDRALRA 137
Query: 136 LPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVK 195
LPITQH R+WPLYL FV+ +PETA+RV+RRYLKLFPED E+Y++YL +RLDEAA +
Sbjct: 138 LPITQHGRIWPLYLQFVRRFEMPETALRVYRRYLKLFPEDTEEYVDYLQEADRLDEAAQQ 197
Query: 196 LAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLW 255
LA+IV+ E FVSKHGKSNHQLWNELC++IS+NP K+ SLNVDAIIRGGLRRYTDQLGHLW
Sbjct: 198 LAHIVDNEHFVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDAIIRGGLRRYTDQLGHLW 257
Query: 256 NSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDT 315
NSLADYY+RSGLF+RARDIYEEAIQTVTTVRDFTQVFD YAQFEELSLN+RME++A N+
Sbjct: 258 NSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQFEELSLNRRMEQVAANEA 317
Query: 316 PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRTY 375
+ QNPHNV EWHKRV L++ KP +II TY
Sbjct: 318 ATEEDDIDVELRLSRFEYLMERRLLLLNSVLLRQNPHNVHEWHKRVTLYEDKPAEIISTY 377
Query: 376 TEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCE 435
TEAV+TV PK AVGKLHTLW+EF KFYE N Q+EDAR++F++ T V Y KVEDLA VWCE
Sbjct: 378 TEAVQTVQPKQAVGKLHTLWVEFAKFYEANGQVEDARVVFERGTEVEYVKVEDLAAVWCE 437
Query: 436 WAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG 495
WAE+ELR Q E Y+D+ ETVQAR+++S+K+WS+YADLEESFG
Sbjct: 438 WAEMELRQQQFEAALKLMQRATAMPKRKIAYYDDTETVQARLHRSLKVWSMYADLEESFG 497
Query: 496 TFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP-PR 549
TFK YE+ I L P I + +L + Y E A +E+ + P
Sbjct: 498 TFKTCKAVYERIIDLKICTPQIIINYGMFLEEH--NY----FEEAYRAYEKGISLFKWPN 551
Query: 550 XXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK- 606
+G + A ++E+ PE + +Y K E +G+ +
Sbjct: 552 VYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAKLEEE-HGLARH 610
Query: 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
+Y+RA ++ E+ M F + ++ + R R IY
Sbjct: 611 AMSVYDRATSAVKEDEMFDMYNIFIKKAAEIYGLPRTREIY 651
Score = 828 (296.5 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
Identities = 165/314 (52%), Positives = 208/314 (66%)
Query: 388 VGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV---EDLATVWCEWAELELRAG 444
V L +W E+ + Q E A + +AT +P K+ +D TV A L R+
Sbjct: 428 VEDLAAVWCEWAEMELRQQQFEAALKLMQRATAMPKRKIAYYDDTETVQ---ARLH-RSL 483
Query: 445 QEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG-TFKAYEKG 503
+ ++ ++ + I + ++ + F ++AYEKG
Sbjct: 484 KVWSMYADLEESFGTFKTCKAVYERIIDLKICTPQIIINYGMFLEEHNYFEEAYRAYEKG 543
Query: 504 IALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXX 563
I+LFKWP ++DIWN+YLTKFL RYGGTKLERARDLFEQCL+ CPP
Sbjct: 544 ISLFKWPNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAKLEE 603
Query: 564 XHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623
HGLARHAM+VY+RAT AV +EMF+M+NI+IKKAAEIYG+P+TR+IYE+AIESLPE+
Sbjct: 604 EHGLARHAMSVYDRATSAVKEDEMFDMYNIFIKKAAEIYGLPRTREIYEKAIESLPEQNM 663
Query: 624 RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683
R MC+KFAE+ETKLGE+DRARAIYAHCSQ+CDPR+TA FW WK FE+ HGNEDTMREML
Sbjct: 664 RHMCVKFAELETKLGEVDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMREML 723
Query: 684 RIKRSVQAQYNTQV 697
RIKRSVQA YNTQV
Sbjct: 724 RIKRSVQATYNTQV 737
Score = 61 (26.5 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
Identities = 32/136 (23%), Positives = 60/136 (44%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAII---------NTIYERSLKELPGSY 64
N ++ YE + P S K W Y+ ++ + I N+ +ER+L +
Sbjct: 49 NGVNMVYERALKELPGSYKIWHNYLRTRRKQVRGKIPTDPMYEEVNSAFERALVFMHKMP 108
Query: 65 KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSL--VFMHKMPRIWLDYGRFLMDQHKI 122
++W +Y Q K IT + F+R+L + + + RIW Y +F+ + ++
Sbjct: 109 RIWMDYGAFMTSQCK---ITR-----TRHVFDRALRALPITQHGRIWPLYLQFVR-RFEM 159
Query: 123 TQTR-HVFDRALRALP 137
+T V+ R L+ P
Sbjct: 160 PETALRVYRRYLKLFP 175
>DICTYBASE|DDB_G0277977 [details] [associations]
symbol:xab2 "TPR-like helical domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 dictyBase:DDB_G0277977 GO:GO:0005634 GO:GO:0008380
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006281
GO:GO:0006397 GO:GO:0006351 Gene3D:1.25.40.10 RefSeq:XP_642044.1
ProteinModelPortal:Q54Z08 STRING:Q54Z08 EnsemblProtists:DDB0233461
GeneID:8621256 KEGG:ddi:DDB_G0277977 eggNOG:NOG289100 KO:K12867
OMA:PRSYKLW ProtClustDB:CLSZ2729105 Uniprot:Q54Z08
Length = 850
Score = 1108 (395.1 bits), Expect = 2.3e-172, Sum P(2) = 2.3e-172
Identities = 221/499 (44%), Positives = 317/499 (63%)
Query: 16 EDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRR 75
+DLPYEE++ +NP+SV WLRY+E K+ +P+ N IYER+++ELP SYK+W+ YL R
Sbjct: 30 DDLPYEEDVSKNPYSVNCWLRYLEFKQGSPQKQRNYIYERAIRELPRSYKIWHQYLLERT 89
Query: 76 KQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA 135
++GK I + S+E VN FERSLVF+ KMPRIW++Y FLM Q KIT TR FDRAL A
Sbjct: 90 LAIRGKCILENSFEAVNTLFERSLVFLDKMPRIWIEYCEFLMIQEKITLTRKTFDRALIA 149
Query: 136 LPITQHHRVWPLYLSFVKSHAVPE-TAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
LP+TQH+R+W Y F+ ++P T +RV++RYLK+ PE E+YIEYL I+ E
Sbjct: 150 LPVTQHYRIWNEYTKFILKRSIPSLTCIRVYKRYLKIQPEKVEEYIEYLIKIKEWQEVVN 209
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+L +++ F S GKS H W +LCE++S P +I ++VD++IR G+ +++DQ+G L
Sbjct: 210 QLIKLLDNVKFKSIKGKSRHDHWLQLCEILSSYPKQITGVDVDSVIRSGIGKFSDQIGKL 269
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W L+DYYI+ FE+ARDI+EEA+ +V T RDF+ ++++Y QFE+ SL +EI E D
Sbjct: 270 WCYLSDYYIQLAQFEKARDIFEEALTSVGTARDFSFIWESYTQFED-SLIAAKQEILEED 328
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLD---I 371
PS QNP+NV EW KRV L+ + I
Sbjct: 329 -PSEDNLLEFDIIIERYENLIQRQPLLLNSVMLKQNPNNVQEWLKRVNLYSNPTPNVKMI 387
Query: 372 IRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLAT 431
I+T+T+++K++DP+LA GKL T++ F FYE N++L ARLIF+ + V + ++DL+T
Sbjct: 388 IQTFTDSIKSIDPQLAKGKLSTIYSTFAHFYEQNNKLSQARLIFENSLTVNFKTIDDLST 447
Query: 432 VWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLE 491
++C++AE+EL+ E +E E VQ R++KSIK+W+ Y DLE
Sbjct: 448 LYCDYAEMELKHRNYEKAIEILKRGTVSPKKQNTIIEENEPVQKRLFKSIKIWTFYVDLE 507
Query: 492 ESFGTF---KA-YEKGIAL 506
ESFGTF K+ YEK I L
Sbjct: 508 ESFGTFHNTKSIYEKMIQL 526
Score = 589 (212.4 bits), Expect = 2.3e-172, Sum P(2) = 2.3e-172
Identities = 110/200 (55%), Positives = 140/200 (70%)
Query: 497 FKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXX 556
FKAYE G+ LF +P++ DIW TYLTKF+ RY G KLER RDLFEQ L PP+
Sbjct: 551 FKAYEHGVQLFLFPHVQDIWITYLTKFIQRYAGMKLERTRDLFEQVLSKVPPKESIIFYL 610
Query: 557 XXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIE 616
+GLARH+MAVY+RA +V E+ F+M+ +YI +A+E +G+ +TR+I+ +AIE
Sbjct: 611 MYANFEEQYGLARHSMAVYDRAAKSVDKEDRFKMYLLYIHRASEFFGVNQTREIFSKAIE 670
Query: 617 SLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNE 676
LP++ R MCLKFA+ME K GEIDRAR+IY H SQ DPR + +W W FE HGNE
Sbjct: 671 QLPDQYVRDMCLKFADMEKKYGEIDRARSIYIHGSQFSDPRTSMFYWNTWSDFEKLHGNE 730
Query: 677 DTMREMLRIKRSVQAQYNTQ 696
DT +EMLRI+RSVQA Y TQ
Sbjct: 731 DTFKEMLRIRRSVQASYITQ 750
Score = 97 (39.2 bits), Expect = 3.3e-68, Sum P(3) = 3.3e-68
Identities = 75/320 (23%), Positives = 131/320 (40%)
Query: 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKKNA--PKAI-------INTIYERSLKELPGS 63
+ + + YE I P S K W +Y+ + A K I +NT++ERSL L
Sbjct: 60 QKQRNYIYERAIRELPRSYKIWHQYLLERTLAIRGKCILENSFEAVNTLFERSLVFLDKM 119
Query: 64 YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP--RIWLDYGRFLMDQH- 120
++W Y + Q K IT TF+R+L+ + RIW +Y +F++ +
Sbjct: 120 PRIWIEYCEFLMIQEK---ITL-----TRKTFDRALIALPVTQHYRIWNEYTKFILKRSI 171
Query: 121 -KITQTRHVFDRALRALPITQHHRVWPLYLSFVKS-HAVPETAVRVFR--RYLKLFPEDA 176
+T R V+ R L+ P + YL +K V +++ ++ + +
Sbjct: 172 PSLTCIR-VYKRYLKIQPEKVEEYIE--YLIKIKEWQEVVNQLIKLLDNVKFKSIKGKSR 228
Query: 177 EDYIEYLSSIERLDEAAVKLAYIVNKESFV-SKHGKSNHQ---LWNELCEMISQNP--DK 230
D+ +L E L ++ V+ +S + S GK + Q LW L + Q +K
Sbjct: 229 HDH--WLQLCEILSSYPKQITG-VDVDSVIRSGIGKFSDQIGKLWCYLSDYYIQLAQFEK 285
Query: 231 IRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQ 290
R + +A+ G R +W S + L ++I EE + + +F
Sbjct: 286 ARDIFEEALTSVGTAR---DFSFIWESYTQF--EDSLIAAKQEILEED-PSEDNLLEFDI 339
Query: 291 VFDAYA---QFEELSLNKRM 307
+ + Y Q + L LN M
Sbjct: 340 IIERYENLIQRQPLLLNSVM 359
Score = 89 (36.4 bits), Expect = 2.3e-67, Sum P(3) = 2.3e-67
Identities = 34/161 (21%), Positives = 69/161 (42%)
Query: 72 KLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDR 131
KL+ + +I PS +D+ +E + WL Y F + Q ++++R
Sbjct: 13 KLKMSTITDDIIIQPSIDDL--PYEEDVSKNPYSVNCWLRYLEFKQGSPQ-KQRNYIYER 69
Query: 132 ALRALPITQHHRVWPLYLS----FVKSHAVPET---AVR-VFRRYLKLFPEDAEDYIEYL 183
A+R LP + +++W YL ++ + E AV +F R L + +IEY
Sbjct: 70 AIRELP--RSYKIWHQYLLERTLAIRGKCILENSFEAVNTLFERSLVFLDKMPRIWIEYC 127
Query: 184 SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMI 224
+ + + + L + ++ ++++WNE + I
Sbjct: 128 EFL--MIQEKITLTRKTFDRALIALPVTQHYRIWNEYTKFI 166
Score = 53 (23.7 bits), Expect = 9.8e-116, Sum P(2) = 9.8e-116
Identities = 22/114 (19%), Positives = 47/114 (41%)
Query: 468 DEAETVQARV--YKSIKLWSLYADLEESFG----TFKAYEKGIALFKWPYIFDIWNTYLT 521
D E V ++V +SI + +YA+ EE +G + Y++ F ++ Y+
Sbjct: 591 DLFEQVLSKVPPKESIIFYLMYANFEEQYGLARHSMAVYDRAAKSVDKEDRFKMYLLYIH 650
Query: 522 KFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVY 575
+ +G + + R++F + +E P + +G A ++Y
Sbjct: 651 RASEFFG---VNQTREIFSKAIEQLPDQYVRDMCLKFADMEKKYGEIDRARSIY 701
Score = 42 (19.8 bits), Expect = 3.3e-68, Sum P(3) = 3.3e-68
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 478 YKSIK-LWSLYADLEESFGTFKAYEKGIALFK 508
+K+I L +LY D E + YEK I + K
Sbjct: 439 FKTIDDLSTLYCDYAEMELKHRNYEKAIEILK 470
>ZFIN|ZDB-GENE-040426-685 [details] [associations]
symbol:xab2 "XPA binding protein 2" species:7955
"Danio rerio" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-685 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
HOVERGEN:HBG024066 EMBL:BC056771 IPI:IPI00614939 UniGene:Dr.12501
ProteinModelPortal:Q6PGZ8 STRING:Q6PGZ8 InParanoid:Q6PGZ8
ArrayExpress:Q6PGZ8 Uniprot:Q6PGZ8
Length = 851
Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
Identities = 329/648 (50%), Positives = 426/648 (65%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
++DLPYEEEI+RNP+SVK W+RYIEHK++A K+++N IYER+LKELPGSYKLWYNYL+ R
Sbjct: 14 DDDLPYEEEIIRNPYSVKCWMRYIEHKQSAQKSVLNMIYERALKELPGSYKLWYNYLRER 73
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
RKQVKGK ITDP YE+VNN ER+LVFMHKMPRIW+DY +F++ Q KIT++R FDRALR
Sbjct: 74 RKQVKGKCITDPGYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCKITRSRRTFDRALR 133
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F ++ +PETA+RV+RRYLKL PE+AE+YI+YL S+ RLDEAA+
Sbjct: 134 ALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYIDYLRSVGRLDEAAL 193
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E+FVSK GKSN+QLW+ELC++ISQNPDK+ SLNV AIIRGGL R+TDQLG L
Sbjct: 194 RLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIRGGLTRFTDQLGKL 253
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W S+ADYYIRSG FE+ARD+YEEAI TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 254 WCSMADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEESMIAAKMETTSELG 313
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPHNV EWHKRV+L++G+P II T
Sbjct: 314 QDEDDDIDLELRLARFESLITRRPLLLNSVLLR-QNPHNVHEWHKRVKLYEGQPRQIINT 372
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+T+DP A GK H+LW+ F KFYE N+Q++DAR IF+KAT V Y +V+DLA VWC
Sbjct: 373 YTEAVQTIDPMKATGKPHSLWVSFAKFYEDNEQIDDARTIFEKATKVNYKQVDDLAAVWC 432
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
E+ E+ELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 433 EYGEMELRHENYDQASRILRKATAIPARKAEYFDSSEPVQNRVYKSLKVWSMLADLEESL 492
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP-P 548
GTF++ Y++ I L P I I N Y FL + E + +E+ + P
Sbjct: 493 GTFQSTKAVYDRIIDLRIATPQI--IIN-Y-AMFLEEHN--YFEESFKAYERGIALFKWP 546
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P + + + K E YG+ +
Sbjct: 547 NVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGC-PAKYAKTIYLLYAKLEEEYGLAR 605
Query: 607 -TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653
+YERA ++ E QM + + ++ + RAIY ++
Sbjct: 606 HAMAVYERATAAVEAEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEV 653
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 171/352 (48%), Positives = 219/352 (62%)
Query: 351 PHNVLEWHKRVRLF-DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
PH++ W + + D + +D RT E V+ K V L +W E+G+ ++ +
Sbjct: 389 PHSL--WVSFAKFYEDNEQIDDARTIFEKATKVNYK-QVDDLAAVWCEYGEMELRHENYD 445
Query: 410 DARLIFDKATLVPYTKVEDLATVWCEWAELEL-RAGQEEXXXXXXXXXXXXXXXXXXYHD 468
A I KAT +P K E + E + + ++ + +D
Sbjct: 446 QASRILRKATAIPARKAEYFDS--SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD 503
Query: 469 EAETVQARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
++ + I ++++ + F +FKAYE+GIALFKWP + DIWNTYLTKF+ RY
Sbjct: 504 RIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGIALFKWPNVHDIWNTYLTKFIDRY 563
Query: 528 GGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEM 587
GG KLERARDLFEQ L+ CP + +GLARHAMAVYERAT AV EE
Sbjct: 564 GGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEEYGLARHAMAVYERATAAVEAEER 623
Query: 588 FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
+MFNIYIK+AAEIYG+ TR IY++AIE LP+E R MCL+FA+ME+KLGEIDRARAIY
Sbjct: 624 HQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHARDMCLRFADMESKLGEIDRARAIY 683
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
++CSQICDPRVTA FW WK FEI HGNEDT+REMLRIKRSVQA YNTQV F
Sbjct: 684 SYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNF 735
>UNIPROTKB|F1SCH5 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 KO:K12867 OMA:PRSYKLW
CTD:56949 GeneTree:ENSGT00550000075140 EMBL:CU929919
RefSeq:XP_003123199.1 UniGene:Ssc.48349 Ensembl:ENSSSCT00000014834
GeneID:100525328 KEGG:ssc:100525328 Uniprot:F1SCH5
Length = 855
Score = 1555 (552.4 bits), Expect = 1.2e-159, P = 1.2e-159
Identities = 329/650 (50%), Positives = 417/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 318
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 319 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVALHQGRPREIINT 377
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 378 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWC 437
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
E ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 438 ECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 497
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 551
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 552 NVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 610
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+YERA ++ EP++Q M + + ++ + R IY ++
Sbjct: 611 HAMAVYERATRAV--EPSQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV 658
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 161/352 (45%), Positives = 213/352 (60%)
Query: 351 PHNVLEWHKRVRLF-DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
PH + W + + D LD R E V K V L ++W E G+ ++ +
Sbjct: 394 PHTL--WVAFAKFYEDNGQLDDARVILEKATKVSFK-QVDDLASVWCECGELELRHENYD 450
Query: 410 DARLIFDKATLVPYTKVEDLATVWCEWAELEL-RAGQEEXXXXXXXXXXXXXXXXXXYHD 468
A + KAT +P + E E + + ++ + +D
Sbjct: 451 QALRLLRKATALPARRAEYFDG--SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD 508
Query: 469 EAETVQARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
++ + + ++++ + + F +FKAYE+GI+LFKWP + DIW+TYLTKF++RY
Sbjct: 509 RILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARY 568
Query: 528 GGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEM 587
GG KLERARDLFEQ L+ CPP+ GLARHAMAVYERAT AV P +
Sbjct: 569 GGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPSQQ 628
Query: 588 FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME KLGEIDRARAIY
Sbjct: 629 YDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 688
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
+ CSQICDPR T FW WK FE+ HGNEDT+REMLRI+RSVQA YNTQV F
Sbjct: 689 SFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNF 740
>UNIPROTKB|F6RY07 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 OMA:PRSYKLW
GeneTree:ENSGT00550000075140 EMBL:DAAA02019501 IPI:IPI00700985
Ensembl:ENSBTAT00000015097 Uniprot:F6RY07
Length = 855
Score = 1554 (552.1 bits), Expect = 1.6e-159, P = 1.6e-159
Identities = 329/650 (50%), Positives = 417/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 318
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 319 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVPLHQGRPREIINT 377
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 378 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWC 437
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
E ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 438 ECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 497
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 551
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 552 NVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 610
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+YERA ++ EP +Q M + + ++ + R+IY ++
Sbjct: 611 HAMAVYERATRAV--EPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEV 658
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 161/352 (45%), Positives = 213/352 (60%)
Query: 351 PHNVLEWHKRVRLF-DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
PH + W + + D LD R E V K V L ++W E G+ ++ +
Sbjct: 394 PHTL--WVAFAKFYEDNGQLDDARVILEKATKVSFK-QVDDLASVWCECGELELRHENYD 450
Query: 410 DARLIFDKATLVPYTKVEDLATVWCEWAELEL-RAGQEEXXXXXXXXXXXXXXXXXXYHD 468
A + KAT +P + E E + + ++ + +D
Sbjct: 451 QALRLLRKATALPARRAEYFDG--SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD 508
Query: 469 EAETVQARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
++ + + ++++ + + F +FKAYE+GI+LFKWP + DIW+TYLTKF++RY
Sbjct: 509 RILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARY 568
Query: 528 GGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEM 587
GG KLERARDLFEQ L+ CPP+ GLARHAMAVYERAT AV P +
Sbjct: 569 GGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQ 628
Query: 588 FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME KLGEIDRARAIY
Sbjct: 629 YDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 688
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
+ CSQICDPR T FW WK FE+ HGNEDT+REMLRI+RSVQA YNTQV F
Sbjct: 689 SFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNF 740
>UNIPROTKB|F5H315 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0001824
EMBL:AC008763 HGNC:HGNC:14089 ChiTaRS:XAB2 IPI:IPI01015328
ProteinModelPortal:F5H315 SMR:F5H315 Ensembl:ENST00000534844
ArrayExpress:F5H315 Bgee:F5H315 Uniprot:F5H315
Length = 852
Score = 1550 (550.7 bits), Expect = 4.1e-159, P = 4.1e-159
Identities = 328/650 (50%), Positives = 416/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 16 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 75
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 76 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 135
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 136 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 195
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 196 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 255
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 256 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 315
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 316 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVALHQGRPREIINT 374
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 375 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWC 434
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
+ ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 435 QCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 494
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 495 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 548
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 549 NVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 607
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+YERA ++ EP +Q M + + ++ + R IY ++
Sbjct: 608 HAMAVYERATRAV--EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV 655
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 159/352 (45%), Positives = 215/352 (61%)
Query: 351 PHNVLEWHKRVRLF-DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
PH + W + + D LD R E V+ K V L ++W + G+ ++ +
Sbjct: 391 PHTL--WVAFAKFYEDNGQLDDARVILEKATKVNFK-QVDDLASVWCQCGELELRHENYD 447
Query: 410 DARLIFDKATLVPYTKVEDLATVWCEWAELEL-RAGQEEXXXXXXXXXXXXXXXXXXYHD 468
+A + KAT +P + E E + + ++ + +D
Sbjct: 448 EALRLLRKATALPARRAEYFDG--SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD 505
Query: 469 EAETVQARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
++ + + ++++ + + F +FKAYE+GI+LFKWP + DIW+TYLTKF++RY
Sbjct: 506 RILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARY 565
Query: 528 GGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEM 587
GG KLERARDLFEQ L+ CPP+ GLARHAMAVYERAT AV P +
Sbjct: 566 GGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQ 625
Query: 588 FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME KLGEIDRARAIY
Sbjct: 626 YDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 685
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
+ CSQICDPR T FW WK FE+ HGNEDT++EMLRI+RSVQA YNTQV F
Sbjct: 686 SFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQVNF 737
>UNIPROTKB|Q9HCS7 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IC] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 SMART:SM00386 GO:GO:0005654 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 EMBL:AB026111
EMBL:AF226051 EMBL:AF258567 EMBL:AF547265 EMBL:BC007208
EMBL:BC008778 EMBL:AK074035 EMBL:AB033003 IPI:IPI00163084
RefSeq:NP_064581.2 UniGene:Hs.9822 ProteinModelPortal:Q9HCS7
SMR:Q9HCS7 IntAct:Q9HCS7 MINT:MINT-1475513 STRING:Q9HCS7
PhosphoSite:Q9HCS7 DMDM:25091548 PaxDb:Q9HCS7 PeptideAtlas:Q9HCS7
PRIDE:Q9HCS7 DNASU:56949 Ensembl:ENST00000358368 GeneID:56949
KEGG:hsa:56949 UCSC:uc002mgx.3 CTD:56949 GeneCards:GC19M007684
HGNC:HGNC:14089 MIM:610850 neXtProt:NX_Q9HCS7 PharmGKB:PA134905925
HOVERGEN:HBG024066 InParanoid:Q9HCS7 OrthoDB:EOG4G4GPQ ChiTaRS:XAB2
GenomeRNAi:56949 NextBio:62545 ArrayExpress:Q9HCS7 Bgee:Q9HCS7
CleanEx:HS_XAB2 Genevestigator:Q9HCS7 GermOnline:ENSG00000076924
Uniprot:Q9HCS7
Length = 855
Score = 1550 (550.7 bits), Expect = 4.1e-159, P = 4.1e-159
Identities = 328/650 (50%), Positives = 416/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 318
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 319 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVALHQGRPREIINT 377
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 378 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWC 437
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
+ ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 438 QCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 497
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 551
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 552 NVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 610
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+YERA ++ EP +Q M + + ++ + R IY ++
Sbjct: 611 HAMAVYERATRAV--EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV 658
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 159/352 (45%), Positives = 215/352 (61%)
Query: 351 PHNVLEWHKRVRLF-DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
PH + W + + D LD R E V+ K V L ++W + G+ ++ +
Sbjct: 394 PHTL--WVAFAKFYEDNGQLDDARVILEKATKVNFK-QVDDLASVWCQCGELELRHENYD 450
Query: 410 DARLIFDKATLVPYTKVEDLATVWCEWAELEL-RAGQEEXXXXXXXXXXXXXXXXXXYHD 468
+A + KAT +P + E E + + ++ + +D
Sbjct: 451 EALRLLRKATALPARRAEYFDG--SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD 508
Query: 469 EAETVQARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
++ + + ++++ + + F +FKAYE+GI+LFKWP + DIW+TYLTKF++RY
Sbjct: 509 RILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARY 568
Query: 528 GGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEM 587
GG KLERARDLFEQ L+ CPP+ GLARHAMAVYERAT AV P +
Sbjct: 569 GGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQ 628
Query: 588 FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME KLGEIDRARAIY
Sbjct: 629 YDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 688
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
+ CSQICDPR T FW WK FE+ HGNEDT++EMLRI+RSVQA YNTQV F
Sbjct: 689 SFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQVNF 740
>MGI|MGI:1914689 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10090 "Mus
musculus" [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 MGI:MGI:1914689 GO:GO:0008380 GO:GO:0006397
GO:GO:0006351 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 CTD:56949
HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ EMBL:AK002890 EMBL:AK008628
EMBL:BC021341 IPI:IPI00120744 RefSeq:NP_080432.1 UniGene:Mm.23739
ProteinModelPortal:Q9DCD2 SMR:Q9DCD2 STRING:Q9DCD2
PhosphoSite:Q9DCD2 PaxDb:Q9DCD2 PRIDE:Q9DCD2
Ensembl:ENSMUST00000019614 GeneID:67439 KEGG:mmu:67439
UCSC:uc009kry.1 GeneTree:ENSGT00550000075140 InParanoid:Q9DCD2
NextBio:324566 Bgee:Q9DCD2 CleanEx:MM_XAB2 Genevestigator:Q9DCD2
GermOnline:ENSMUSG00000019470 Uniprot:Q9DCD2
Length = 855
Score = 1547 (549.6 bits), Expect = 8.6e-159, P = 8.6e-159
Identities = 327/650 (50%), Positives = 416/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 318
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 319 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVALHQGRPREIINT 377
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 378 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWC 437
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
+ ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 438 QCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 497
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 551
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 552 NVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 610
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+Y+RA ++ EP +Q M + + ++ + R IY ++
Sbjct: 611 HAMAVYDRATRAV--EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV 658
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 160/352 (45%), Positives = 215/352 (61%)
Query: 351 PHNVLEWHKRVRLF-DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
PH + W + + D LD R E V+ K V L ++W + G+ ++ +
Sbjct: 394 PHTL--WVAFAKFYEDNGQLDDARVILEKATKVNFK-QVDDLASVWCQCGELELRHENYD 450
Query: 410 DARLIFDKATLVPYTKVEDLATVWCEWAELEL-RAGQEEXXXXXXXXXXXXXXXXXXYHD 468
+A + KAT +P + E E + + ++ + +D
Sbjct: 451 EALKLLRKATALPARRAEYFDG--SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD 508
Query: 469 EAETVQARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
++ + + ++++ + + F +FKAYE+GI+LFKWP + DIW+TYLTKF+SRY
Sbjct: 509 RILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRY 568
Query: 528 GGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEM 587
GG KLERARDLFEQ L+ CPP+ GLARHAMAVY+RAT AV P +
Sbjct: 569 GGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQ 628
Query: 588 FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME KLGEIDRARAIY
Sbjct: 629 YDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 688
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
+ CSQICDPR T FW WK FE+ HGNEDT+REMLRI+RSVQA YNTQV F
Sbjct: 689 SFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNF 740
>RGD|621217 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10116 "Rattus
norvegicus" [GO:0001824 "blastocyst development" evidence=IEA;ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 RGD:621217 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 CTD:56949 HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ
GeneTree:ENSGT00550000075140 EMBL:AF277899 EMBL:BC081723
IPI:IPI00201089 RefSeq:NP_620809.1 UniGene:Rn.24921
ProteinModelPortal:Q99PK0 STRING:Q99PK0 Ensembl:ENSRNOT00000001309
GeneID:245976 KEGG:rno:245976 UCSC:RGD:621217 InParanoid:Q99PK0
NextBio:623254 Genevestigator:Q99PK0 GermOnline:ENSRNOG00000000988
Uniprot:Q99PK0
Length = 855
Score = 1547 (549.6 bits), Expect = 8.6e-159, P = 8.6e-159
Identities = 327/650 (50%), Positives = 416/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 318
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 319 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVALHQGRPREIINT 377
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 378 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWC 437
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
+ ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 438 QCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 497
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 551
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 552 NVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 610
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+Y+RA ++ EP +Q M + + ++ + R IY ++
Sbjct: 611 HAMAVYDRATRAV--EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV 658
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 160/352 (45%), Positives = 215/352 (61%)
Query: 351 PHNVLEWHKRVRLF-DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
PH + W + + D LD R E V+ K V L ++W + G+ ++ +
Sbjct: 394 PHTL--WVAFAKFYEDNGQLDDARVILEKATKVNFK-QVDDLASVWCQCGELELRHENYD 450
Query: 410 DARLIFDKATLVPYTKVEDLATVWCEWAELEL-RAGQEEXXXXXXXXXXXXXXXXXXYHD 468
+A + KAT +P + E E + + ++ + +D
Sbjct: 451 EALKLLRKATALPARRAEYFDG--SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD 508
Query: 469 EAETVQARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
++ + + ++++ + + F +FKAYE+GI+LFKWP + DIW+TYLTKF+SRY
Sbjct: 509 RILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRY 568
Query: 528 GGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEM 587
GG KLERARDLFEQ L+ CPP+ GLARHAMAVY+RAT AV P +
Sbjct: 569 GGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQ 628
Query: 588 FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME KLGEIDRARAIY
Sbjct: 629 YDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 688
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
+ CSQICDPR T FW WK FE+ HGNEDT+REMLRI+RSVQA YNTQV F
Sbjct: 689 SFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNF 740
>POMBASE|SPBC211.02c [details] [associations]
symbol:cwf3 "complexed with Cdc5 protein Cwf3"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0044732 "mitotic spindle
pole body" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IC] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPBC211.02c
GO:GO:0005829 GO:GO:0044732 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0045292
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
OrthoDB:EOG4DBXP7 EMBL:AF251149 PIR:T50337 RefSeq:NP_596612.1
ProteinModelPortal:Q9P7R9 IntAct:Q9P7R9 STRING:Q9P7R9
EnsemblFungi:SPBC211.02c.1 GeneID:2540753 KEGG:spo:SPBC211.02c
NextBio:20801873 Uniprot:Q9P7R9
Length = 790
Score = 910 (325.4 bits), Expect = 2.2e-148, Sum P(2) = 2.2e-148
Identities = 190/494 (38%), Positives = 288/494 (58%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIE-HKKNA-PKAIINTIYERSLKELPGSYKLWYNYL 71
N +D P+E E+LR+P+S+K WLRYI+ H+ + K ++ ++ER+ ELPGSYK+W +YL
Sbjct: 15 NVDDEPFELELLRDPYSLKSWLRYIKTHEGSTLEKRVL--LFERACSELPGSYKIWKSYL 72
Query: 72 KLRRKQVK--GKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVF 129
+LR V+ ++ VN+ FERSL+ +HKMP IW Y +FLM Q +T+ R F
Sbjct: 73 ELRVAHVEHLNPYFHAEAFASVNDCFERSLILLHKMPVIWKLYLQFLMKQPNVTKIRCTF 132
Query: 130 DRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERL 189
+ ALRALP+TQH +W ++ + + + V+RRY+++ P E+YIE L +
Sbjct: 133 NSALRALPVTQHDDIWDMFTKYAEDIG-GLFCIHVYRRYIQVEPRAIENYIEILCKLGLW 191
Query: 190 DEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249
+EAA + I+N+ F+S KSN+Q+W E E++ Q+PD ++++V+ + R G++R++D
Sbjct: 192 NEAARQYEDILNRPVFLSAKRKSNYQIWLEFSELVVQHPDHTQNIDVEKVFRAGIKRFSD 251
Query: 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEE 309
Q G LW LA YYIR G +E+AR + E + + TVR+FT +FDA+ +FEE L+ R+E
Sbjct: 252 QAGKLWTYLAQYYIRIGDYEKARSTFYEGMNNIMTVRNFTIIFDAFVEFEEQWLSARVEA 311
Query: 310 IAENDTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPL 369
+ N QN +NV EW +RV+ +
Sbjct: 312 SSGNANDELSIDFHMAWLEKILDKRPLYINDVLLR----QNINNVDEWLRRVKFLEDDSE 367
Query: 370 DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL 429
+++ YT+A+K V+PKLA G L L+ EF +FYE D LE +R+IF+KAT VPY V +L
Sbjct: 368 KVVQVYTDAIKNVNPKLAHGSLGKLFSEFARFYENFDDLEQSRIIFEKATHVPYKTVNEL 427
Query: 430 ATVWCEWAELELRAGQEEXXXXXXXXXXXX-XXXXXXYHDEAETVQARVYKSIKLWSLYA 488
A VW +WAE+ELR + + DE+ + Q R++KS K+W Y
Sbjct: 428 AQVWIDWAEMELRHQNFDAARKLIGDAVHAPRKSHISFFDESLSPQVRLHKSSKIWMYYL 487
Query: 489 DLEESFGTFKAYEK 502
DLEES GT + K
Sbjct: 488 DLEESVGTIETTRK 501
Score = 560 (202.2 bits), Expect = 2.2e-148, Sum P(2) = 2.2e-148
Identities = 109/217 (50%), Positives = 145/217 (66%)
Query: 487 YADL-EES--F-GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQC 542
YA+L EE+ F +FK YE+G+ALF +P F++WN YLTKF+ RY GT +ER RDLFEQ
Sbjct: 520 YANLLEENAYFEDSFKIYERGVALFSYPVAFELWNLYLTKFVKRYQGTHMERTRDLFEQA 579
Query: 543 LEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIY 602
LE CPP G A+ ++++ E+A V + ++N+ + K A Y
Sbjct: 580 LEGCPPEFSKSIYLLYADFEEKFGKAKRSISILEKAADKVKTADRLAIYNVLLVKVALNY 639
Query: 603 GIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGF 662
G+ TR +YE+AIESL + + MCL+FAEMETKLGEIDRAR IY H SQ CDPRV +
Sbjct: 640 GVLATRTVYEKAIESLSDSEVKDMCLRFAEMETKLGEIDRARLIYIHGSQYCDPRVETDY 699
Query: 663 WAAWKSFEITHGN-EDTMREMLRIKRSVQAQYNTQVL 698
W AW+ FEI +GN E+T++EMLRIKRSVQ +++T L
Sbjct: 700 WKAWQEFEIRYGNPEETVKEMLRIKRSVQTKFSTDSL 736
Score = 65 (27.9 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 25/71 (35%), Positives = 32/71 (45%)
Query: 479 KSIKLWSLYADLEESFGTFKA----YEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLER 534
KSI L LYAD EE FG K EK K I+N L K YG +
Sbjct: 589 KSIYL--LYADFEEKFGKAKRSISILEKAADKVKTADRLAIYNVLLVKVALNYG---VLA 643
Query: 535 ARDLFEQCLEA 545
R ++E+ +E+
Sbjct: 644 TRTVYEKAIES 654
Score = 48 (22.0 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 11 TTENEEDLPYEEEILRNPFSVKHWLRYIE----HKKNA-PK------AIINTIYERSLKE 59
+T + L +E P S K W Y+E H ++ P A +N +ERSL
Sbjct: 45 STLEKRVLLFERACSELPGSYKIWKSYLELRVAHVEHLNPYFHAEAFASVNDCFERSLIL 104
Query: 60 LPGSYKLWYNYLKLRRKQ 77
L +W YL+ KQ
Sbjct: 105 LHKMPVIWKLYLQFLMKQ 122
Score = 39 (18.8 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 7/38 (18%), Positives = 20/38 (52%)
Query: 380 KTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDK 417
+++ P++ + K +W+ + E +E R ++D+
Sbjct: 468 ESLSPQVRLHKSSKIWMYYLDLEESVGTIETTRKLYDR 505
Score = 38 (18.4 bits), Expect = 3.0e-93, Sum P(2) = 3.0e-93
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 594 YIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEM 633
Y+ + I TR++Y+R E P Q+ + +A +
Sbjct: 486 YLDLEESVGTIETTRKLYDRVFELKIATP--QVVVNYANL 523
>TAIR|locus:2184236 [details] [associations]
symbol:AT5G28740 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 EMBL:AF262041 eggNOG:NOG289100 KO:K12867
HOGENOM:HOG000176133 OMA:RRYLMYD IPI:IPI00544799 RefSeq:NP_198226.1
UniGene:At.47571 ProteinModelPortal:Q9LKU3 SMR:Q9LKU3 IntAct:Q9LKU3
STRING:Q9LKU3 PaxDb:Q9LKU3 PRIDE:Q9LKU3 EnsemblPlants:AT5G28740.1
GeneID:832986 KEGG:ath:AT5G28740 TAIR:At5g28740 InParanoid:Q9LKU3
PhylomeDB:Q9LKU3 ProtClustDB:CLSN2687354 Genevestigator:Q9LKU3
Uniprot:Q9LKU3
Length = 917
Score = 845 (302.5 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
Identities = 162/302 (53%), Positives = 215/302 (71%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
++EDL YEEE+LRN FS+K W RY+ K +P IYER+LK LPGSYKLWY YL+
Sbjct: 10 SQEDLLYEEELLRNQFSLKLWWRYLIAKAESPFKKRFIIYERALKALPGSYKLWYAYLRE 69
Query: 74 RRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
R V+ +T P Y+ +NNTFER LV MHKMPRIW+ Y + L Q IT+TR FDRAL
Sbjct: 70 RLDIVRNLPVTHPQYDSLNNTFERGLVTMHKMPRIWVMYLQTLTVQQLITRTRRTFDRAL 129
Query: 134 RALPITQHHRVWPLYLSFVKSHAVP-ETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEA 192
ALP+TQH R+W YL FV + +P ET++RV+RRYL P E++IE+L ER E+
Sbjct: 130 CALPVTQHDRIWEPYLVFVSQNGIPIETSLRVYRRYLMYDPSHIEEFIEFLVKSERWQES 189
Query: 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252
A +LA ++N + F S GK+ H+LW ELCE++ + + I LNVDAIIRGG+R++TD++G
Sbjct: 190 AERLASVLNDDKFYSIKGKTKHKLWLELCELLVHHANVISGLNVDAIIRGGIRKFTDEVG 249
Query: 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312
LW SLADYYIR L E+ARDIYEE + V TVRDF+ +FD Y++FEE ++ K+ME ++
Sbjct: 250 MLWTSLADYYIRKNLLEKARDIYEEGMMKVVTVRDFSVIFDVYSRFEESTVAKKMEMMSS 309
Query: 313 ND 314
+D
Sbjct: 310 SD 311
Score = 586 (211.3 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
Identities = 135/351 (38%), Positives = 197/351 (56%)
Query: 351 PHNVLEWHKRVRLFDGKPLDIIRT---YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407
PH + W +L++ D++ T + +AV+ V+ K V L ++W E+ + +
Sbjct: 422 PHTL--WVAFAKLYENHK-DLVNTRVIFDKAVQ-VNYK-TVDHLASVWCEWAEMELRHKN 476
Query: 408 LEDARLIFDKATLVPYTKVED-LATVWCEWAELEL-RAGQEEXXXXXXXXXXXXXXXXXX 465
+ A + +AT VP +V +A E +++L R+ +
Sbjct: 477 FKGALELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRA 536
Query: 466 YHDEAETVQARVYKSIKLWSLYADLEESF-GTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524
+++ ++ + I ++ + + F FK YE+G+ +FK+P++ DIW TYLTKF+
Sbjct: 537 VYEKILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFV 596
Query: 525 SRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLP 584
RYG TKLERAR+LFE + P +GLA+ AM VYE AT V
Sbjct: 597 KRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEATKKVPE 656
Query: 585 EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES-LPEEPTRQMCLKFAEMETKLGEIDRA 643
+ EM+ IYI +AAEI+G+P+TR+IYE+AIES LP + + MC+KFAE+E LGEIDRA
Sbjct: 657 GQKLEMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRA 716
Query: 644 RAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYN 694
RA+Y + SQ DPR FW W FE+ HGNEDT REMLRIKRSV A Y+
Sbjct: 717 RALYKYSSQFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKRSVSASYS 767
Score = 411 (149.7 bits), Expect = 9.1e-126, Sum P(2) = 9.1e-126
Identities = 108/312 (34%), Positives = 155/312 (49%)
Query: 349 QNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408
QNPHNV +WH+RV++F+G I TYTEAV+TVDP AVGK HTLW+ F K YE + L
Sbjct: 380 QNPHNVEQWHRRVKIFEGNAAKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYENHKDL 439
Query: 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELR----AGQEEXXXXXXXXXXXXXXXXX 464
+ R+IFDKA V Y V+ LA+VWCEWAE+ELR G E
Sbjct: 440 VNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALELMRRATAVPTVEVRRRV 499
Query: 465 XYHDEAETVQARVYKSIKLWSLYADLEESFGTFKA----YEKGIAL-FKWPYIFDIWNTY 519
D E VQ ++++S++LWS Y DLEES GT ++ YEK + L P I I N
Sbjct: 500 AA-DGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEKILDLRIATPQI--IMNYA 556
Query: 520 LTKFLSRYGGTKLERARDLFEQCLEACP-PRXXXXXXXXXXXXXXXHGLAR--HAMAVYE 576
++Y E A ++E+ ++ P +G + A ++E
Sbjct: 557 FLLEENKY----FEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYGKTKLERARELFE 612
Query: 577 RATGAVLPEEMFEMFNIYIKKAAEIYGIPK-TRQIYERAIESLPEEPTRQMCLKFAEMET 635
A ++ P + + K E YG+ K ++YE A + +PE +M +
Sbjct: 613 HAV-SMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEATKKVPEGQKLEMYEIYISRAA 671
Query: 636 KLGEIDRARAIY 647
++ + R R IY
Sbjct: 672 EIFGVPRTREIY 683
Score = 55 (24.4 bits), Expect = 9.1e-60, Sum P(2) = 9.1e-60
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 24 ILR-NPFSVKHWLRYIE-HKKNAPKAIIN-TIYERS---LKELPGSYKLWYNYLKL---R 74
+LR NP +V+ W R ++ + NA K I+ T R+ +K + + LW + KL
Sbjct: 377 LLRQNPHNVEQWHRRVKIFEGNAAKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYENH 436
Query: 75 RKQVKGKVITDPSYEDVN 92
+ V +VI D + + VN
Sbjct: 437 KDLVNTRVIFDKAVQ-VN 453
>WB|WBGene00016837 [details] [associations]
symbol:C50F2.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0005622
GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10 InterPro:IPR013105
Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 GeneTree:ENSGT00550000075140 EMBL:FO080915
PIR:T29775 RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
Identities = 236/512 (46%), Positives = 322/512 (62%)
Query: 1 PESTGFTGIYTTENEEDLPYEEEILRNPFSVKHWLRYIEHK-KN-APKAIINTIYERSLK 58
P S GI + ED+P+EE+I+RNP SV W RYI+HK +N +P + IYER+L
Sbjct: 14 PNSETMKGI----SSEDVPFEEDIIRNPTSVNCWQRYIDHKLQNKSPAKQMFLIYERALA 69
Query: 59 ELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD 118
SYKLWY+YLK R + K TD S+ + +T+ER L+ +HKMPRIW+ Y ++
Sbjct: 70 VFERSYKLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIK 129
Query: 119 QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED 178
+ IT+TR VFDRALR+LP+TQH R+W LY+ F+ SH +PET +RV+RRYLK+ P+ ED
Sbjct: 130 RGLITETRRVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNPKARED 189
Query: 179 YIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDA 238
Y+EYL +++DEAA +L +VN++ VS+ G++ HQLW +LC++IS+NP KI SLNVDA
Sbjct: 190 YVEYLIERDQIDEAAKELTTLVNQDQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNVDA 249
Query: 239 IIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQF 298
IIR G+ RYTDQ+G LW SLADYYIRS FERARD+YEEAI V+TVRDF QV+DAYA F
Sbjct: 250 IIRQGIYRYTDQVGFLWCSLADYYIRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAF 309
Query: 299 EELSLNKRMEEIAENDTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWH 358
EE ++ M+E+ ++ P QNPHNV EW
Sbjct: 310 EEREVSIMMQEVEQSGDPEEEVDLEWMFQRYQHLMERKNELMNSVLLR--QNPHNVGEWL 367
Query: 359 KRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKA 418
RV +++G I T+ EAVK+V+PK+ VGK+ LWI K YE N L+ AR F+ A
Sbjct: 368 NRVNIYEGNYNKQIETFKEAVKSVNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETA 427
Query: 419 TLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVY 478
+ + V +LA VWC +AE+E++ + ++ ++VQARV+
Sbjct: 428 VISQFGGVSELANVWCAYAEMEMK--HKRAKAALTVMQRACVVPKPGDYENMQSVQARVH 485
Query: 479 KSIKLWSLYADLEESFGTF----KAYEKGIAL 506
+S LW++YAD EE GT K Y+K I L
Sbjct: 486 RSPILWAMYADYEECCGTVESCRKVYDKMIEL 517
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 145/347 (41%), Positives = 200/347 (57%)
Query: 357 WHKRVRLF-DGKPLDIIR-TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLI 414
W +L+ D LD R T+ AV + V +L +W + + + + + A +
Sbjct: 404 WIGLAKLYEDNGDLDAARKTFETAV--ISQFGGVSELANVWCAYAEMEMKHKRAKAALTV 461
Query: 415 FDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQ 474
+A +VP K D + A + R+ +D+ ++
Sbjct: 462 MQRACVVP--KPGDYENMQSVQARVH-RSPILWAMYADYEECCGTVESCRKVYDKMIELR 518
Query: 475 ARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLE 533
+ I ++++ + E F F+AYEKGIALFKWP +FDIWNTYL KF+ RYGG KLE
Sbjct: 519 VASPQMIMNYAMFLEENEYFELAFQAYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLE 578
Query: 534 RARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFNI 593
RARDLFEQCLE CPP HGLARHA+++Y RA V +M M+NI
Sbjct: 579 RARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLARHALSIYNRACSGVDRADMHSMYNI 638
Query: 594 YIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653
YIKK E+YGI + R I+ERAI LPE+ +R M L++A++ET +GEIDRARAIYAH ++I
Sbjct: 639 YIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEI 698
Query: 654 CDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLFT 700
DP+V FW WK+FE+ HGNE T+R+MLR++RSV+A YN V T
Sbjct: 699 SDPKVHVKFWDTWKNFEVAHGNEATVRDMLRVRRSVEASYNVNVTLT 745
>UNIPROTKB|P91175 [details] [associations]
symbol:C50F2.3 "Protein C50F2.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF13181 SMART:SM00386 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
GeneTree:ENSGT00550000075140 EMBL:FO080915 PIR:T29775
RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
Identities = 236/512 (46%), Positives = 322/512 (62%)
Query: 1 PESTGFTGIYTTENEEDLPYEEEILRNPFSVKHWLRYIEHK-KN-APKAIINTIYERSLK 58
P S GI + ED+P+EE+I+RNP SV W RYI+HK +N +P + IYER+L
Sbjct: 14 PNSETMKGI----SSEDVPFEEDIIRNPTSVNCWQRYIDHKLQNKSPAKQMFLIYERALA 69
Query: 59 ELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD 118
SYKLWY+YLK R + K TD S+ + +T+ER L+ +HKMPRIW+ Y ++
Sbjct: 70 VFERSYKLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIK 129
Query: 119 QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED 178
+ IT+TR VFDRALR+LP+TQH R+W LY+ F+ SH +PET +RV+RRYLK+ P+ ED
Sbjct: 130 RGLITETRRVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNPKARED 189
Query: 179 YIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDA 238
Y+EYL +++DEAA +L +VN++ VS+ G++ HQLW +LC++IS+NP KI SLNVDA
Sbjct: 190 YVEYLIERDQIDEAAKELTTLVNQDQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNVDA 249
Query: 239 IIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQF 298
IIR G+ RYTDQ+G LW SLADYYIRS FERARD+YEEAI V+TVRDF QV+DAYA F
Sbjct: 250 IIRQGIYRYTDQVGFLWCSLADYYIRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAF 309
Query: 299 EELSLNKRMEEIAENDTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWH 358
EE ++ M+E+ ++ P QNPHNV EW
Sbjct: 310 EEREVSIMMQEVEQSGDPEEEVDLEWMFQRYQHLMERKNELMNSVLLR--QNPHNVGEWL 367
Query: 359 KRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKA 418
RV +++G I T+ EAVK+V+PK+ VGK+ LWI K YE N L+ AR F+ A
Sbjct: 368 NRVNIYEGNYNKQIETFKEAVKSVNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETA 427
Query: 419 TLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVY 478
+ + V +LA VWC +AE+E++ + ++ ++VQARV+
Sbjct: 428 VISQFGGVSELANVWCAYAEMEMK--HKRAKAALTVMQRACVVPKPGDYENMQSVQARVH 485
Query: 479 KSIKLWSLYADLEESFGTF----KAYEKGIAL 506
+S LW++YAD EE GT K Y+K I L
Sbjct: 486 RSPILWAMYADYEECCGTVESCRKVYDKMIEL 517
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 145/347 (41%), Positives = 200/347 (57%)
Query: 357 WHKRVRLF-DGKPLDIIR-TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLI 414
W +L+ D LD R T+ AV + V +L +W + + + + + A +
Sbjct: 404 WIGLAKLYEDNGDLDAARKTFETAV--ISQFGGVSELANVWCAYAEMEMKHKRAKAALTV 461
Query: 415 FDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQ 474
+A +VP K D + A + R+ +D+ ++
Sbjct: 462 MQRACVVP--KPGDYENMQSVQARVH-RSPILWAMYADYEECCGTVESCRKVYDKMIELR 518
Query: 475 ARVYKSIKLWSLYADLEESFG-TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLE 533
+ I ++++ + E F F+AYEKGIALFKWP +FDIWNTYL KF+ RYGG KLE
Sbjct: 519 VASPQMIMNYAMFLEENEYFELAFQAYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLE 578
Query: 534 RARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFNI 593
RARDLFEQCLE CPP HGLARHA+++Y RA V +M M+NI
Sbjct: 579 RARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLARHALSIYNRACSGVDRADMHSMYNI 638
Query: 594 YIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653
YIKK E+YGI + R I+ERAI LPE+ +R M L++A++ET +GEIDRARAIYAH ++I
Sbjct: 639 YIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEI 698
Query: 654 CDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLFT 700
DP+V FW WK+FE+ HGNE T+R+MLR++RSV+A YN V T
Sbjct: 699 SDPKVHVKFWDTWKNFEVAHGNEATVRDMLRVRRSVEASYNVNVTLT 745
>ASPGD|ASPL0000052140 [details] [associations]
symbol:AN0111 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0008380 EMBL:BN001308
GO:GO:0006397 GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10
EMBL:AACD01000004 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
RefSeq:XP_657715.1 ProteinModelPortal:Q5BH69 STRING:Q5BH69
EnsemblFungi:CADANIAT00002638 GeneID:2875887 KEGG:ani:AN0111.2
HOGENOM:HOG000176133 OrthoDB:EOG4DBXP7 Uniprot:Q5BH69
Length = 851
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 218/600 (36%), Positives = 317/600 (52%)
Query: 47 AIINT--IYERSLKELPGSYKLWYNYLKLRRKQVKGK--VITDPSYEDVNNTFERSLVFM 102
+I+N + ER+ K+LP SYKLW YL+ R K +K + + ++ VN FER+L+ +
Sbjct: 64 SILNDFQVMERACKQLPRSYKLWKMYLEFRTKHLKNRNAIKYRAEFQKVNTLFERALILL 123
Query: 103 HKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162
+KMPRIW Y F++ Q +TQTR FDRALRALP+TQH+R+W LY +F +S A +TAV
Sbjct: 124 NKMPRIWEMYLTFMLQQPLVTQTRRTFDRALRALPVTQHNRIWKLYKTFARS-ASGQTAV 182
Query: 163 RVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCE 222
+++ RY+++ PE+AE+YI L + +A + I++ F S+ GKSN QLW E+ +
Sbjct: 183 KIWARYMQIHPENAEEYINLLVEMGHYTDAIKRYMEILDNPRFQSREGKSNFQLWTEMVD 242
Query: 223 MISQNPDKIRS-----LNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEE 277
++ KI + ++VDAI+R G+ R+ DQ G LW LA Y+I G FE+ARD++EE
Sbjct: 243 LLVSKAKKIETGPQTGIDVDAILRSGIDRFADQRGKLWAGLATYWITKGNFEKARDVFEE 302
Query: 278 AIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIA---ENDTPSXXXXXXXXXXXXXXXXX 334
I TV TVRDFT +FD+Y +FEE + ME A +N
Sbjct: 303 GITTVMTVRDFTLIFDSYVEFEESIIGSLMEAAAVRADNGKADEEADFDLDLRMLRFEQL 362
Query: 335 XXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTL 394
QNP+NV+EW KRV L+ ++I+ TYT A+ ++PK AVGK L
Sbjct: 363 MDRRPFLVNDVLLRQNPNNVIEWEKRVALWGDNNVEIVNTYTAAIAAINPKKAVGKFSEL 422
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ-EEXXXXXX 453
W+ + KFYE L+ AR+IF+KA VP+ V +LA WCEWAE+ELR+ ++
Sbjct: 423 WVNYAKFYERGGDLDTARIIFEKAVKVPFKSVNELAETWCEWAEMELRSENFDKAVEIMA 482
Query: 454 XXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG----TFKAYEKGIAL-FK 508
Y DE + Q R++KS KLWS Y DL ES T K YE+ L
Sbjct: 483 KATQAPKKSTVDYFDETLSPQQRIHKSWKLWSFYVDLVESVSSIEETKKVYERIFELRIA 542
Query: 509 WPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGL 567
P + L + K+ ER DLF P G+
Sbjct: 543 TPQTVVNYANLLEEHKYFEESFKVYERGLDLFTY-----PVAFELWNLYLTKAVDRKIGI 597
Query: 568 ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK-TRQIYERAIESLPEEPTRQM 626
R ++E+A P+ ++ +Y E G+ + +IYERA ++ +E +M
Sbjct: 598 ER-LRDLFEQALDGCPPKFARPLYLMY-GNLEEERGLARHAMRIYERATRAVSDEDRFEM 655
Score = 649 (233.5 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 150/354 (42%), Positives = 200/354 (56%)
Query: 357 WHKRVRLFD-GKPLDIIRT-YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLI 414
W + ++ G LD R + +AVK P +V +L W E+ + ++ + A I
Sbjct: 423 WVNYAKFYERGGDLDTARIIFEKAVKV--PFKSVNELAETWCEWAEMELRSENFDKAVEI 480
Query: 415 FDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQ 474
KAT P +TV ++ + L Q +E + V
Sbjct: 481 MAKATQAPKK-----STV--DYFDETLSPQQRIHKSWKLWSFYVDLVESVSSIEETKKVY 533
Query: 475 ARVYKSIKLWSL-----YADLEESFG----TFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525
R+++ +++ + YA+L E +FK YE+G+ LF +P F++WN YLTK +
Sbjct: 534 ERIFE-LRIATPQTVVNYANLLEEHKYFEESFKVYERGLDLFTYPVAFELWNLYLTKAVD 592
Query: 526 RYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPE 585
R G +ER RDLFEQ L+ CPP+ GLARHAM +YERAT AV E
Sbjct: 593 RKIG--IERLRDLFEQALDGCPPKFARPLYLMYGNLEEERGLARHAMRIYERATRAVSDE 650
Query: 586 EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARA 645
+ FEMF YI K+A +G+P TR IYERAI +LP+ ++MCLKFAEME +LGEIDRARA
Sbjct: 651 DRFEMFEFYITKSASNFGLPSTRPIYERAIAALPDHEAKEMCLKFAEMERRLGEIDRARA 710
Query: 646 IYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
IY H SQ CDPR A FW W++FE+ HGNEDT +EMLRIKRSVQAQYNT V F
Sbjct: 711 IYGHASQFCDPRTNAPFWQKWEAFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNF 764
Score = 103 (41.3 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 40/159 (25%), Positives = 72/159 (45%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
+ D YE+++LRNP ++K WL YIE+K+ T+YE++ P L + L
Sbjct: 16 DNDSVYEQDLLRNPGTIKPWLAYIEYKQQN-----GTLYEQAFVGRPLD-ALIISILNDF 69
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
+ + SY+ ++ L F K L + + + + +F+RAL
Sbjct: 70 QVMERACKQLPRSYK----LWKMYLEFRTKH----LKNRNAIKYRAEFQKVNTLFERAL- 120
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173
+ + + R+W +YL+F+ + R F R L+ P
Sbjct: 121 -ILLNKMPRIWEMYLTFMLQQPLVTQTRRTFDRALRALP 158
Score = 46 (21.3 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 30 SVKHWLRYIE-HKKNAPKAIINTIYE 54
+VK W RY++ H +NA + IN + E
Sbjct: 181 AVKIWARYMQIHPENAEE-YINLLVE 205
>GENEDB_PFALCIPARUM|PFL1735c [details] [associations]
symbol:PFL1735c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:AE014188 KO:K12867
RefSeq:XP_001350753.1 ProteinModelPortal:Q8I564
EnsemblProtists:PFL1735c:mRNA GeneID:811399 KEGG:pfa:PFL1735c
EuPathDB:PlasmoDB:PF3D7_1235900 HOGENOM:HOG000283457 Uniprot:Q8I564
Length = 1031
Score = 358 (131.1 bits), Expect = 7.4e-56, Sum P(3) = 7.4e-56
Identities = 66/200 (33%), Positives = 112/200 (56%)
Query: 496 TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA------CPPR 549
+FK YEK +++F +PY++ I+ Y+ K++ RY + RDLF+Q + P
Sbjct: 779 SFKVYEKALSVFHYPYVYPIYVNYINKYIQRYKDKNISYVRDLFKQAIYGNDNKTFIPKE 838
Query: 550 XXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQ 609
+G + +++Y+ A + + + + I+I K + YGI K R+
Sbjct: 839 FAKHIFLMYANFESNYGFIKKELSIYKEAIPFLEEPDKIKFYKIFISKVSRAYGIQKARE 898
Query: 610 IYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSF 669
+E AI++L ++ RQ+C+ + +ME KL E +R RA+Y + +Q +P + F+ W+ F
Sbjct: 899 AFEEAIQTLSDDSARQLCMIYIDMEYKLNEYERVRALYIYTAQYTNPLLYMDFYKDWREF 958
Query: 670 EITHGNEDTMREMLRIKRSV 689
E HGNE+T REM+RIKRSV
Sbjct: 959 EALHGNENTFREMIRIKRSV 978
Score = 259 (96.2 bits), Expect = 7.4e-56, Sum P(3) = 7.4e-56
Identities = 70/282 (24%), Positives = 135/282 (47%)
Query: 41 KKNAPKAIINT--IYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDP-SYEDVNNTFER 97
KK K + + IY LK P S+KLWY+Y+K + + + +Y+ +N F++
Sbjct: 181 KKKKKKRVYDLFCIYAIILKYFPYSFKLWYHYIKDSIEMITDVYYRNKKNYKYINKIFDQ 240
Query: 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAV 157
L++M+ I++ Y +FL Q + + R +F+ +L+ + + Q + +W L F +
Sbjct: 241 CLLYMYNFKSIYIMYIQFLYIQRDVKKIRQIFNLSLQNVYLNQQNDLWECQLLFNEKINN 300
Query: 158 PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLW 217
+RY+ ++PE ++ + A + YI+N E S + ++
Sbjct: 301 KVINYEYIKRYVTIYPEQIIHLFKHYVKYKMYKNAMITFFYILNSEDNFDLGNFSKYDIY 360
Query: 218 NELCEMISQNPDKIRSLNVDAI--IRGGL---RRYTDQLGHLWNSLADYYIRSGLFERAR 272
E+ ++++ SLN D I +R L + Y + + ++ LA+ +I G + +A
Sbjct: 361 QEIYKLLNSKG----SLNNDIIHLLRNNLYIFKNY-ESITSIYILLANNFIYDGRWNKAM 415
Query: 273 DIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
D YEE I TV DF +FD Y + ++ ++ + E E +
Sbjct: 416 DSYEEGISECYTVNDFITLFDNYIEMLKMLIDLNIYEQEERE 457
Score = 84 (34.6 bits), Expect = 7.4e-56, Sum P(3) = 7.4e-56
Identities = 23/94 (24%), Positives = 44/94 (46%)
Query: 350 NPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
N +NV W ++ + + I Y E+++ + GKL ++I + +Y ++
Sbjct: 573 NKNNVYIWLSKIDSIINEE-EKIHLYDESLRYFEKNDYTGKLSDIYISYAYYYYNKNEYT 631
Query: 410 DARLIFDKATLV-PYTK-VEDLATVWCEWAELEL 441
+ IF A Y K ++A ++C W E+EL
Sbjct: 632 NCINIFKLALKQNAYFKSANEIANIFCAWIEIEL 665
Score = 71 (30.1 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 24/124 (19%), Positives = 60/124 (48%)
Query: 195 KLAYIVN-KESFVS----KHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249
K+ Y+++ ++++++ K+ K+N +W + I +KI L +++ YT
Sbjct: 553 KINYLLDQRKTYIADIKLKNNKNNVYIWLSKIDSIINEEEKIH-LYDESLRYFEKNDYTG 611
Query: 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEE 309
+L ++ S A YY + +I++ A++ + ++ + + + E+ L +R +
Sbjct: 612 KLSDIYISYAYYYYNKNEYTNCINIFKLALKQNAYFKSANEIANIFCAWIEIELLERNYK 671
Query: 310 IAEN 313
A N
Sbjct: 672 EALN 675
Score = 46 (21.3 bits), Expect = 4.3e-29, Sum P(3) = 4.3e-29
Identities = 17/96 (17%), Positives = 42/96 (43%)
Query: 63 SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQ 119
+Y +N L K V + + +Y + T F H ++ L +L ++
Sbjct: 715 NYHTNFNLLSCM-KLVSLIIDMEMNYGTIETTLNMFDFFYHSKCINVKMVLTLATYLYEK 773
Query: 120 HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH 155
++ V+++AL + + V+P+Y++++ +
Sbjct: 774 KYFNESFKVYEKALS---VFHYPYVYPIYVNYINKY 806
Score = 42 (19.8 bits), Expect = 6.3e-22, Sum P(3) = 6.3e-22
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 481 IKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
+KL SL D+E ++GT E + +F + Y N + L+ Y
Sbjct: 726 MKLVSLIIDMEMNYGTI---ETTLNMFDFFYHSKCINVKMVLTLATY 769
Score = 40 (19.1 bits), Expect = 4.9e-33, Sum P(3) = 4.9e-33
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 28 PFSVKHWLRYIEHKKNAPKAIINTIYERSLK 58
P+S K W YI K++ + +I +Y R+ K
Sbjct: 203 PYSFKLWYHYI---KDSIE-MITDVYYRNKK 229
>UNIPROTKB|Q8I564 [details] [associations]
symbol:PFL1735c "RNA-processing protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:AE014188 KO:K12867
RefSeq:XP_001350753.1 ProteinModelPortal:Q8I564
EnsemblProtists:PFL1735c:mRNA GeneID:811399 KEGG:pfa:PFL1735c
EuPathDB:PlasmoDB:PF3D7_1235900 HOGENOM:HOG000283457 Uniprot:Q8I564
Length = 1031
Score = 358 (131.1 bits), Expect = 7.4e-56, Sum P(3) = 7.4e-56
Identities = 66/200 (33%), Positives = 112/200 (56%)
Query: 496 TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA------CPPR 549
+FK YEK +++F +PY++ I+ Y+ K++ RY + RDLF+Q + P
Sbjct: 779 SFKVYEKALSVFHYPYVYPIYVNYINKYIQRYKDKNISYVRDLFKQAIYGNDNKTFIPKE 838
Query: 550 XXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQ 609
+G + +++Y+ A + + + + I+I K + YGI K R+
Sbjct: 839 FAKHIFLMYANFESNYGFIKKELSIYKEAIPFLEEPDKIKFYKIFISKVSRAYGIQKARE 898
Query: 610 IYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSF 669
+E AI++L ++ RQ+C+ + +ME KL E +R RA+Y + +Q +P + F+ W+ F
Sbjct: 899 AFEEAIQTLSDDSARQLCMIYIDMEYKLNEYERVRALYIYTAQYTNPLLYMDFYKDWREF 958
Query: 670 EITHGNEDTMREMLRIKRSV 689
E HGNE+T REM+RIKRSV
Sbjct: 959 EALHGNENTFREMIRIKRSV 978
Score = 259 (96.2 bits), Expect = 7.4e-56, Sum P(3) = 7.4e-56
Identities = 70/282 (24%), Positives = 135/282 (47%)
Query: 41 KKNAPKAIINT--IYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDP-SYEDVNNTFER 97
KK K + + IY LK P S+KLWY+Y+K + + + +Y+ +N F++
Sbjct: 181 KKKKKKRVYDLFCIYAIILKYFPYSFKLWYHYIKDSIEMITDVYYRNKKNYKYINKIFDQ 240
Query: 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAV 157
L++M+ I++ Y +FL Q + + R +F+ +L+ + + Q + +W L F +
Sbjct: 241 CLLYMYNFKSIYIMYIQFLYIQRDVKKIRQIFNLSLQNVYLNQQNDLWECQLLFNEKINN 300
Query: 158 PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLW 217
+RY+ ++PE ++ + A + YI+N E S + ++
Sbjct: 301 KVINYEYIKRYVTIYPEQIIHLFKHYVKYKMYKNAMITFFYILNSEDNFDLGNFSKYDIY 360
Query: 218 NELCEMISQNPDKIRSLNVDAI--IRGGL---RRYTDQLGHLWNSLADYYIRSGLFERAR 272
E+ ++++ SLN D I +R L + Y + + ++ LA+ +I G + +A
Sbjct: 361 QEIYKLLNSKG----SLNNDIIHLLRNNLYIFKNY-ESITSIYILLANNFIYDGRWNKAM 415
Query: 273 DIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
D YEE I TV DF +FD Y + ++ ++ + E E +
Sbjct: 416 DSYEEGISECYTVNDFITLFDNYIEMLKMLIDLNIYEQEERE 457
Score = 84 (34.6 bits), Expect = 7.4e-56, Sum P(3) = 7.4e-56
Identities = 23/94 (24%), Positives = 44/94 (46%)
Query: 350 NPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
N +NV W ++ + + I Y E+++ + GKL ++I + +Y ++
Sbjct: 573 NKNNVYIWLSKIDSIINEE-EKIHLYDESLRYFEKNDYTGKLSDIYISYAYYYYNKNEYT 631
Query: 410 DARLIFDKATLV-PYTK-VEDLATVWCEWAELEL 441
+ IF A Y K ++A ++C W E+EL
Sbjct: 632 NCINIFKLALKQNAYFKSANEIANIFCAWIEIEL 665
Score = 71 (30.1 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 24/124 (19%), Positives = 60/124 (48%)
Query: 195 KLAYIVN-KESFVS----KHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249
K+ Y+++ ++++++ K+ K+N +W + I +KI L +++ YT
Sbjct: 553 KINYLLDQRKTYIADIKLKNNKNNVYIWLSKIDSIINEEEKIH-LYDESLRYFEKNDYTG 611
Query: 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEE 309
+L ++ S A YY + +I++ A++ + ++ + + + E+ L +R +
Sbjct: 612 KLSDIYISYAYYYYNKNEYTNCINIFKLALKQNAYFKSANEIANIFCAWIEIELLERNYK 671
Query: 310 IAEN 313
A N
Sbjct: 672 EALN 675
Score = 46 (21.3 bits), Expect = 4.3e-29, Sum P(3) = 4.3e-29
Identities = 17/96 (17%), Positives = 42/96 (43%)
Query: 63 SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQ 119
+Y +N L K V + + +Y + T F H ++ L +L ++
Sbjct: 715 NYHTNFNLLSCM-KLVSLIIDMEMNYGTIETTLNMFDFFYHSKCINVKMVLTLATYLYEK 773
Query: 120 HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH 155
++ V+++AL + + V+P+Y++++ +
Sbjct: 774 KYFNESFKVYEKALS---VFHYPYVYPIYVNYINKY 806
Score = 42 (19.8 bits), Expect = 6.3e-22, Sum P(3) = 6.3e-22
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 481 IKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527
+KL SL D+E ++GT E + +F + Y N + L+ Y
Sbjct: 726 MKLVSLIIDMEMNYGTI---ETTLNMFDFFYHSKCINVKMVLTLATY 769
Score = 40 (19.1 bits), Expect = 4.9e-33, Sum P(3) = 4.9e-33
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 28 PFSVKHWLRYIEHKKNAPKAIINTIYERSLK 58
P+S K W YI K++ + +I +Y R+ K
Sbjct: 203 PYSFKLWYHYI---KDSIE-MITDVYYRNKK 229
>SGD|S000002824 [details] [associations]
symbol:SYF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0071008
"U2-type post-mRNA release spliceosomal complex" evidence=IDA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IDA] [GO:0071006
"U2-type catalytic step 1 spliceosome" evidence=IDA] [GO:0000974
"Prp19 complex" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] [GO:0000384 "first
spliceosomal transesterification activity" evidence=IC] [GO:0000349
"generation of catalytic spliceosome for first transesterification
step" evidence=IDA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 SGD:S000002824 EMBL:U33007
EMBL:BK006938 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0000349
GO:GO:0000974 GO:GO:0071006 GO:GO:0071007 GO:GO:0071008
GO:GO:0071004 eggNOG:NOG289100 KO:K12867 OrthoDB:EOG4DBXP7
GeneTree:ENSGT00550000075140 PIR:S69700 RefSeq:NP_010704.1
ProteinModelPortal:Q04048 SMR:Q04048 DIP:DIP-1681N IntAct:Q04048
MINT:MINT-385933 STRING:Q04048 PaxDb:Q04048 PeptideAtlas:Q04048
EnsemblFungi:YDR416W GeneID:852025 KEGG:sce:YDR416W CYGD:YDR416w
HOGENOM:HOG000065931 OMA:ENIRNDE NextBio:970249
Genevestigator:Q04048 GermOnline:YDR416W Uniprot:Q04048
Length = 859
Score = 206 (77.6 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 79/349 (22%), Positives = 145/349 (41%)
Query: 164 VFRRYLKLFPEDAEDYIEYLSSIERL-DEAAVKLAYIVNKESFVSKHGKSNHQL-WNELC 221
+ RYLK+ P+ + E L+++ D +K Y E ++ + S L +EL
Sbjct: 214 ILERYLKVAPQQKRN--ESLATLALTRDNITIKSVY----EKYLPQDENSGKYLPSSELP 267
Query: 222 EMISQNP-DKIRSLNVDAIIRGGLRR----YTDQLGHLWNSLADYYIRSGLFERARDIYE 276
++ N + L +D +R+ Y D+ L SLA YYI G + D+ +
Sbjct: 268 FELNFNYLASLEKLGLDNQYEEFMRQMNGIYPDKWLFLILSLAKYYISRGRLDSCGDLLK 327
Query: 277 EAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTP--SXXXXXXXXXXXXXXXXX 334
+++Q DF ++++ Y FE+ + ++ END+ +
Sbjct: 328 KSLQQTLRYSDFDRIYNFYLLFEQECSQFILGKLKENDSKFFNQKDWTEKLQAHMATFES 387
Query: 335 XXXXXXXXXXXXXXQNPHNVLE-WHKRVRLFDGKPLDIIRTYTEAVKTVDP-KLAV-GKL 391
+ N++E W KRV L + Y+EA+ +DP K+ G
Sbjct: 388 LINLYDIYLNDVALRQDSNLVETWMKRVSL-QKSAAEKCNVYSEAILKIDPRKVGTPGSF 446
Query: 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELEL-RAGQEEXXX 450
LW +G Y ++ + AR ++ ++ VPY +EDL ++ WA+ EL + G E
Sbjct: 447 GRLWCSYGDLYWRSNAISTARELWTQSLKVPYPYIEDLEEIYLNWADRELDKEGVERAFS 506
Query: 451 XXXXXXXXXXX---XXXXYHDEAETVQAR--VYKSIKLWSLYADLEESF 494
Y + + A+ ++ S+++WS Y D E++
Sbjct: 507 ILEDALHVPTNPEILLEKYKNGHRKIPAQTVLFNSLRIWSKYIDYLEAY 555
Score = 204 (76.9 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 55/210 (26%), Positives = 99/210 (47%)
Query: 492 ESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS-RYGGTKLERARDLFEQCLE-ACPPR 549
E +F+ YEK I LF +++W YL S + E R LFE+ L+ C
Sbjct: 600 EVMESFQVYEKTIPLFPPEIQYELWIEYLEVATSHQLSSLSPEHIRFLFEKALKNLCSNG 659
Query: 550 XXXXXXXXXXXXXXXH--GLARHAMAVYERAT--GAVLP----EEMFEMFNIYIKKAAEI 601
GL ++ + R G V E +++ + I KA
Sbjct: 660 IDCKTIFIAYSVFEERISGLISKSIEILRRGAVIGTVSVSTHLESRLQLWRMCISKAEST 719
Query: 602 YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG 661
G TR++Y+ I+ LP + +KF++ E+ +GE RAR I A+ +++ P
Sbjct: 720 LGPSVTRELYQECIQILPNSKAVEFVIKFSDFESSIGETIRAREILAYGAKLLPPSRNTE 779
Query: 662 FWAAWKSFEITHGNEDTMREMLRIKRSVQA 691
W +++ FE+ HG+++T ++ML++K+ +++
Sbjct: 780 LWDSFEIFELKHGDKETYKDMLKMKKVLES 809
Score = 147 (56.8 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 41/150 (27%), Positives = 68/150 (45%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIYERSLKELPGSYKLWYNYL 71
N+ED+ +E EI + P ++ W RYIE+ K + I +YER + +W +Y+
Sbjct: 20 NDEDVAFEYEIQKTPQNILTWKRYIEYWKEEGRTDKQIRWLYERFCSQFVTDTSIWEDYI 79
Query: 72 KLRRKQVKGKVITDPSYEDVNNTFERSLVF-MHKMPRIWLDYGRFLMDQHKITQTRHVFD 130
R + K V T + F+R L + RI L Y ++Q+ + RH
Sbjct: 80 --RWESTKEVVETSRIFW----LFQRCLKSCVRDCDRICLSYLELAIEQYDLAMIRHALA 133
Query: 131 RALRALPITQHHRVWPLYLSFVKSHAVPET 160
+L + H +VW + FV+ +P T
Sbjct: 134 SSLMKMEREMHRKVWDPVIKFVEEKVLPLT 163
Score = 53 (23.7 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 587 MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET 635
M E F ++++ Y + ++ Q+YE+ I P E ++ +++ E+ T
Sbjct: 587 MAENFALFLQNH---YEVMESFQVYEKTIPLFPPEIQYELWIEYLEVAT 632
Score = 53 (23.7 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 27/142 (19%), Positives = 57/142 (40%)
Query: 29 FSVKHWLRYIEHKKNAPKAIINT--IY--ERSLKELPGSYKLWYNYLKLRRKQV-KGKVI 83
F+ K W ++ +++IN IY + +L++ + W + L++ K V
Sbjct: 369 FNQKDWTEKLQAHMATFESLINLYDIYLNDVALRQDSNLVETWMKRVSLQKSAAEKCNVY 428
Query: 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHR 143
+ E + R + R+W YG + I+ R ++ ++L+ +P
Sbjct: 429 S----EAILKIDPRKVGTPGSFGRLWCSYGDLYWRSNAISTARELWTQSLK-VPYPYIED 483
Query: 144 VWPLYLSFVKSHAVPETAVRVF 165
+ +YL++ E R F
Sbjct: 484 LEEIYLNWADRELDKEGVERAF 505
Score = 48 (22.0 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 20/65 (30%), Positives = 25/65 (38%)
Query: 482 KLWSLYADLE-ESFGTFKAYEKGIALFK--WPYIFDIWNTYLTKFLSRYGGTKLERARDL 538
+LW Y DL S A E K +PYI D+ YL +ERA +
Sbjct: 448 RLWCSYGDLYWRSNAISTARELWTQSLKVPYPYIEDLEEIYLNWADRELDKEGVERAFSI 507
Query: 539 FEQCL 543
E L
Sbjct: 508 LEDAL 512
Score = 45 (20.9 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 565 HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAA--EIYGI-PK-TRQIYERAIESL 618
H + VYE+ PE +E++ Y++ A ++ + P+ R ++E+A+++L
Sbjct: 598 HYEVMESFQVYEKTIPLFPPEIQYELWIEYLEVATSHQLSSLSPEHIRFLFEKALKNL 655
Score = 45 (20.9 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 269 ERARDIYEEAIQTVTTVR-DFTQVFDAYAQFEE 300
E R ++E+A++ + + D +F AY+ FEE
Sbjct: 642 EHIRFLFEKALKNLCSNGIDCKTIFIAYSVFEE 674
>CGD|CAL0005248 [details] [associations]
symbol:orf19.2893 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0071007 "U2-type catalytic
step 2 spliceosome" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0071006 "U2-type catalytic step 1
spliceosome" evidence=IEA] [GO:0071008 "U2-type post-mRNA release
spliceosomal complex" evidence=IEA] [GO:0000974 "Prp19 complex"
evidence=IEA] [GO:0000349 "generation of catalytic spliceosome for
first transesterification step" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0005248 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 EMBL:AACQ01000084 EMBL:AACQ01000083
InterPro:IPR013633 Pfam:PF08424 eggNOG:NOG289100 KO:K12867
RefSeq:XP_715549.1 RefSeq:XP_715605.1 ProteinModelPortal:Q5A1C6
STRING:Q5A1C6 GeneID:3642755 GeneID:3642796 KEGG:cal:CaO19.10411
KEGG:cal:CaO19.2893 Uniprot:Q5A1C6
Length = 845
Score = 196 (74.1 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 48/174 (27%), Positives = 91/174 (52%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPK--AIINTIY--ERSLKELPGSYKLWYNY 70
+ED+ YEE I ++P ++ W+ Y K NA ++ N ++ RS+K P S +LW
Sbjct: 11 DEDISYEESISKDPTNISTWISYYNFKSNATSTTSLYNKLFILYRSVKSNPTSIELWQLL 70
Query: 71 LKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLM---------DQH- 120
+ L + + ++ +D E FE +L+ + +IW+ + ++L+ + H
Sbjct: 71 IDLVLLE-QSQIQSDTIIE----IFETALINLSTNHKIWIQFFKYLLLTSSDGDDGEYHI 125
Query: 121 -KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173
K+T R +F+ L+++P+ H +WPLYL F + TAV+++ +Y + P
Sbjct: 126 NKVTYIRRMFNNCLKSIPLVDHILIWPLYLQFADTIG-GITAVKIYLKYKQFLP 178
Score = 186 (70.5 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 46/156 (29%), Positives = 78/156 (50%)
Query: 349 QNPHNVLEWHKRVRLFDGKPLD----IIRTYTEAVKTVDPKLAV----GKLHTLWIEFGK 400
QN +++ W +R + + + D +I+T T+A+K+++P V KL +W+++
Sbjct: 364 QNINDLDTWFERFEIIETQTPDDLNLLIQTLTQALKSINPLKVVTTNNSKLSGIWLKYVD 423
Query: 401 FYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ--EEXXXXXXXXXXX 458
Y + A LIF K+ L Y ++LA ++ W+E+ L + + E
Sbjct: 424 IYSSRGDFQTADLIFSKSVLSQYIDPDELAELYINWSEMILGSDKFPETKAIEILDDILY 483
Query: 459 XXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
Y D ++ VQ R+ KSIKLW+ Y DL ESF
Sbjct: 484 REYSDINYTDNSKPVQQRIIKSIKLWNFYIDLLESF 519
Score = 175 (66.7 bits), Expect = 1.3e-30, Sum P(4) = 1.3e-30
Identities = 52/216 (24%), Positives = 101/216 (46%)
Query: 120 HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS-HAVPETAVRV-FRRYLKLFP---- 173
+K+T R +F+ L+++P+ H +WPLYL F + + + + ++++L L P
Sbjct: 126 NKVTYIRRMFNNCLKSIPLVDHILIWPLYLQFADTIGGITAVKIYLKYKQFLPL-PILQG 184
Query: 174 -EDAEDYIEYLSSIERLDEAAVKLAYIVNKESF---VSKHGKSNHQLWNELCEMISQNPD 229
E+ Y ++ + + K + N F + + +L + + Q D
Sbjct: 185 KENVNKQRNYGMNLHEIIDKLRKFGDVENVMKFYYEIITNPNDYAKLPQPIVYYLFQYID 244
Query: 230 KI----RSLNVD---AIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282
+ +S + D ++ L +Y D LG L+ Y+ G E+ R Y + I+
Sbjct: 245 LLIRIKKSFDDDYFETLLTKSLYQYPDHLGKLYIKATKYFKSRGNIEKTRYYYNQGIKKC 304
Query: 283 TTVRDFTQVFDAYAQFEELSLNKRMEEI-AENDTPS 317
T++DFT ++D+Y QFEE + + E++ E+D S
Sbjct: 305 CTIKDFTMIYDSYLQFEENQVTEITEKVDPESDLGS 340
Score = 80 (33.2 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 653 ICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSV 689
+C + W W+SFE+ +G+E + ++MLR KR V
Sbjct: 760 LCQSTLLDESWKMWESFEMEYGDELSFKDMLRFKRIV 796
Score = 72 (30.4 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 513 FDIWNTYLTKFLSRYGGTKLERARDLFEQCL 543
F+IWN YL K + T ER RDLFEQ +
Sbjct: 585 FEIWNVYLIKAIKHIQLT--ERIRDLFEQSI 613
Score = 62 (26.9 bits), Expect = 0.00093, Sum P(3) = 0.00093
Identities = 50/254 (19%), Positives = 109/254 (42%)
Query: 61 PGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV-FMHKMPRIWLDYGRFLMDQ 119
P Y L + Y+ L + +K K D +E + +SL + + ++++ ++ +
Sbjct: 234 PIVYYL-FQYIDLLIR-IK-KSFDDDYFETL---LTKSLYQYPDHLGKLYIKATKYFKSR 287
Query: 120 HKITQTRHVFDRALR-ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED 178
I +TR+ +++ ++ I ++ YL F ++ T K+ PE
Sbjct: 288 GNIEKTRYYYNQGIKKCCTIKDFTMIYDSYLQFEENQVTEITE--------KVDPESDLG 339
Query: 179 YIEYLSSIERL-DEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMI-SQNPDKIRSL-- 234
+ YL E+L D+ + L + +++ ++ W E E+I +Q PD + L
Sbjct: 340 SL-YLDDFEKLIDDRKILLNDMKLRQNI------NDLDTWFERFEIIETQTPDDLNLLIQ 392
Query: 235 NVDAIIRG--GLRRYT---DQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFT 289
+ ++ L+ T +L +W D Y G F+ A I+ +++ ++ D
Sbjct: 393 TLTQALKSINPLKVVTTNNSKLSGIWLKYVDIYSSRGDFQTADLIFSKSV--LSQYIDPD 450
Query: 290 QVFDAYAQFEELSL 303
++ + Y + E+ L
Sbjct: 451 ELAELYINWSEMIL 464
Score = 54 (24.1 bits), Expect = 5.2e-31, Sum P(4) = 5.2e-31
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 588 FEMFNIYIKKAAE-IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG 638
FE++N+Y+ KA + I + R ++E++I + + + L + + E G
Sbjct: 585 FEIWNVYLIKAIKHIQLTERIRDLFEQSINEIAAYLVKPILLLYYQYELDQG 636
Score = 54 (24.1 bits), Expect = 5.6e-12, Sum P(3) = 5.6e-12
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK-FAEMETKLGEIDRARAIYAHC 650
+I ++ ++I ++ + +R I+S+ L+ F E + +L EI++ Y H
Sbjct: 480 DILYREYSDINYTDNSKPVQQRIIKSIKLWNFYIDLLESFIESDNQLKEIEKVTNAYQHL 539
Query: 651 SQ--ICDPRVT---AGFWAAWKSFE 670
+ I PR+ A F +W +E
Sbjct: 540 IKLKIATPRIMINFAQFLESWNQYE 564
Score = 44 (20.5 bits), Expect = 3.9e-15, Sum P(3) = 3.9e-15
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 254 LWNSLADYYIRS-GLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE 299
+WN I+ L ER RD++E++I + + Y Q+E
Sbjct: 587 IWNVYLIKAIKHIQLTERIRDLFEQSINEIAAYL-VKPILLLYYQYE 632
Score = 39 (18.8 bits), Expect = 7.2e-18, Sum P(4) = 7.2e-18
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 376 TEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCE 435
TE + VDP+ +G L+ +F K ++D +++ + L + DL T W E
Sbjct: 326 TEITEKVDPESDLGSLYL--DDFEKL------IDDRKILLNDMKL--RQNINDLDT-WFE 374
Query: 436 WAEL 439
E+
Sbjct: 375 RFEI 378
Score = 38 (18.4 bits), Expect = 9.1e-18, Sum P(4) = 9.1e-18
Identities = 20/91 (21%), Positives = 45/91 (49%)
Query: 217 WNELCEMISQNPDKIRSLNV-DAIIRGGLRRYTDQLGHLWNS--LADYYIRS-GLFERAR 272
W+E+ + P+ +++ + D I+ R Y+D + + NS + I+S L+
Sbjct: 459 WSEMILGSDKFPET-KAIEILDDIL---YREYSD-INYTDNSKPVQQRIIKSIKLWNFYI 513
Query: 273 DIYEEAIQTVTTVRDFTQVFDAYAQFEELSL 303
D+ E I++ +++ +V +AY +L +
Sbjct: 514 DLLESFIESDNQLKEIEKVTNAYQHLIKLKI 544
Score = 38 (18.4 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 41 KKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRR 75
+K P++ + ++Y ++L K+ N +KLR+
Sbjct: 330 EKVDPESDLGSLYLDDFEKLIDDRKILLNDMKLRQ 364
>UNIPROTKB|Q5A1C6 [details] [associations]
symbol:SYF1 "Putative uncharacterized protein SYF1"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0005248 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 EMBL:AACQ01000084 EMBL:AACQ01000083
InterPro:IPR013633 Pfam:PF08424 eggNOG:NOG289100 KO:K12867
RefSeq:XP_715549.1 RefSeq:XP_715605.1 ProteinModelPortal:Q5A1C6
STRING:Q5A1C6 GeneID:3642755 GeneID:3642796 KEGG:cal:CaO19.10411
KEGG:cal:CaO19.2893 Uniprot:Q5A1C6
Length = 845
Score = 196 (74.1 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 48/174 (27%), Positives = 91/174 (52%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPK--AIINTIY--ERSLKELPGSYKLWYNY 70
+ED+ YEE I ++P ++ W+ Y K NA ++ N ++ RS+K P S +LW
Sbjct: 11 DEDISYEESISKDPTNISTWISYYNFKSNATSTTSLYNKLFILYRSVKSNPTSIELWQLL 70
Query: 71 LKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLM---------DQH- 120
+ L + + ++ +D E FE +L+ + +IW+ + ++L+ + H
Sbjct: 71 IDLVLLE-QSQIQSDTIIE----IFETALINLSTNHKIWIQFFKYLLLTSSDGDDGEYHI 125
Query: 121 -KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173
K+T R +F+ L+++P+ H +WPLYL F + TAV+++ +Y + P
Sbjct: 126 NKVTYIRRMFNNCLKSIPLVDHILIWPLYLQFADTIG-GITAVKIYLKYKQFLP 178
Score = 186 (70.5 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 46/156 (29%), Positives = 78/156 (50%)
Query: 349 QNPHNVLEWHKRVRLFDGKPLD----IIRTYTEAVKTVDPKLAV----GKLHTLWIEFGK 400
QN +++ W +R + + + D +I+T T+A+K+++P V KL +W+++
Sbjct: 364 QNINDLDTWFERFEIIETQTPDDLNLLIQTLTQALKSINPLKVVTTNNSKLSGIWLKYVD 423
Query: 401 FYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ--EEXXXXXXXXXXX 458
Y + A LIF K+ L Y ++LA ++ W+E+ L + + E
Sbjct: 424 IYSSRGDFQTADLIFSKSVLSQYIDPDELAELYINWSEMILGSDKFPETKAIEILDDILY 483
Query: 459 XXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
Y D ++ VQ R+ KSIKLW+ Y DL ESF
Sbjct: 484 REYSDINYTDNSKPVQQRIIKSIKLWNFYIDLLESF 519
Score = 175 (66.7 bits), Expect = 1.3e-30, Sum P(4) = 1.3e-30
Identities = 52/216 (24%), Positives = 101/216 (46%)
Query: 120 HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS-HAVPETAVRV-FRRYLKLFP---- 173
+K+T R +F+ L+++P+ H +WPLYL F + + + + ++++L L P
Sbjct: 126 NKVTYIRRMFNNCLKSIPLVDHILIWPLYLQFADTIGGITAVKIYLKYKQFLPL-PILQG 184
Query: 174 -EDAEDYIEYLSSIERLDEAAVKLAYIVNKESF---VSKHGKSNHQLWNELCEMISQNPD 229
E+ Y ++ + + K + N F + + +L + + Q D
Sbjct: 185 KENVNKQRNYGMNLHEIIDKLRKFGDVENVMKFYYEIITNPNDYAKLPQPIVYYLFQYID 244
Query: 230 KI----RSLNVD---AIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282
+ +S + D ++ L +Y D LG L+ Y+ G E+ R Y + I+
Sbjct: 245 LLIRIKKSFDDDYFETLLTKSLYQYPDHLGKLYIKATKYFKSRGNIEKTRYYYNQGIKKC 304
Query: 283 TTVRDFTQVFDAYAQFEELSLNKRMEEI-AENDTPS 317
T++DFT ++D+Y QFEE + + E++ E+D S
Sbjct: 305 CTIKDFTMIYDSYLQFEENQVTEITEKVDPESDLGS 340
Score = 80 (33.2 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 653 ICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSV 689
+C + W W+SFE+ +G+E + ++MLR KR V
Sbjct: 760 LCQSTLLDESWKMWESFEMEYGDELSFKDMLRFKRIV 796
Score = 72 (30.4 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 513 FDIWNTYLTKFLSRYGGTKLERARDLFEQCL 543
F+IWN YL K + T ER RDLFEQ +
Sbjct: 585 FEIWNVYLIKAIKHIQLT--ERIRDLFEQSI 613
Score = 62 (26.9 bits), Expect = 0.00093, Sum P(3) = 0.00093
Identities = 50/254 (19%), Positives = 109/254 (42%)
Query: 61 PGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV-FMHKMPRIWLDYGRFLMDQ 119
P Y L + Y+ L + +K K D +E + +SL + + ++++ ++ +
Sbjct: 234 PIVYYL-FQYIDLLIR-IK-KSFDDDYFETL---LTKSLYQYPDHLGKLYIKATKYFKSR 287
Query: 120 HKITQTRHVFDRALR-ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED 178
I +TR+ +++ ++ I ++ YL F ++ T K+ PE
Sbjct: 288 GNIEKTRYYYNQGIKKCCTIKDFTMIYDSYLQFEENQVTEITE--------KVDPESDLG 339
Query: 179 YIEYLSSIERL-DEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMI-SQNPDKIRSL-- 234
+ YL E+L D+ + L + +++ ++ W E E+I +Q PD + L
Sbjct: 340 SL-YLDDFEKLIDDRKILLNDMKLRQNI------NDLDTWFERFEIIETQTPDDLNLLIQ 392
Query: 235 NVDAIIRG--GLRRYT---DQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFT 289
+ ++ L+ T +L +W D Y G F+ A I+ +++ ++ D
Sbjct: 393 TLTQALKSINPLKVVTTNNSKLSGIWLKYVDIYSSRGDFQTADLIFSKSV--LSQYIDPD 450
Query: 290 QVFDAYAQFEELSL 303
++ + Y + E+ L
Sbjct: 451 ELAELYINWSEMIL 464
Score = 54 (24.1 bits), Expect = 5.2e-31, Sum P(4) = 5.2e-31
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 588 FEMFNIYIKKAAE-IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG 638
FE++N+Y+ KA + I + R ++E++I + + + L + + E G
Sbjct: 585 FEIWNVYLIKAIKHIQLTERIRDLFEQSINEIAAYLVKPILLLYYQYELDQG 636
Score = 54 (24.1 bits), Expect = 5.6e-12, Sum P(3) = 5.6e-12
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK-FAEMETKLGEIDRARAIYAHC 650
+I ++ ++I ++ + +R I+S+ L+ F E + +L EI++ Y H
Sbjct: 480 DILYREYSDINYTDNSKPVQQRIIKSIKLWNFYIDLLESFIESDNQLKEIEKVTNAYQHL 539
Query: 651 SQ--ICDPRVT---AGFWAAWKSFE 670
+ I PR+ A F +W +E
Sbjct: 540 IKLKIATPRIMINFAQFLESWNQYE 564
Score = 44 (20.5 bits), Expect = 3.9e-15, Sum P(3) = 3.9e-15
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 254 LWNSLADYYIRS-GLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE 299
+WN I+ L ER RD++E++I + + Y Q+E
Sbjct: 587 IWNVYLIKAIKHIQLTERIRDLFEQSINEIAAYL-VKPILLLYYQYE 632
Score = 39 (18.8 bits), Expect = 7.2e-18, Sum P(4) = 7.2e-18
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 376 TEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCE 435
TE + VDP+ +G L+ +F K ++D +++ + L + DL T W E
Sbjct: 326 TEITEKVDPESDLGSLYL--DDFEKL------IDDRKILLNDMKL--RQNINDLDT-WFE 374
Query: 436 WAEL 439
E+
Sbjct: 375 RFEI 378
Score = 38 (18.4 bits), Expect = 9.1e-18, Sum P(4) = 9.1e-18
Identities = 20/91 (21%), Positives = 45/91 (49%)
Query: 217 WNELCEMISQNPDKIRSLNV-DAIIRGGLRRYTDQLGHLWNS--LADYYIRS-GLFERAR 272
W+E+ + P+ +++ + D I+ R Y+D + + NS + I+S L+
Sbjct: 459 WSEMILGSDKFPET-KAIEILDDIL---YREYSD-INYTDNSKPVQQRIIKSIKLWNFYI 513
Query: 273 DIYEEAIQTVTTVRDFTQVFDAYAQFEELSL 303
D+ E I++ +++ +V +AY +L +
Sbjct: 514 DLLESFIESDNQLKEIEKVTNAYQHLIKLKI 544
Score = 38 (18.4 bits), Expect = 1.1e-16, Sum P(4) = 1.1e-16
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 41 KKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRR 75
+K P++ + ++Y ++L K+ N +KLR+
Sbjct: 330 EKVDPESDLGSLYLDDFEKLIDDRKILLNDMKLRQ 364
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 154 (59.3 bits), Expect = 8.3e-18, Sum P(3) = 8.3e-18
Identities = 80/315 (25%), Positives = 131/315 (41%)
Query: 389 GKLHTLWIEFGKFYEVNDQLEDARLIFDKAT-LVPYTKVEDLATVWCEWAELEL-RAGQE 446
G L+I F KF E ++E AR+I+ A VP ++ +DL + + + R G E
Sbjct: 243 GNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGDRIGIE 302
Query: 447 EXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG----TFKAYEK 502
+ Y +E + + K+ +W Y +EE G T + YE+
Sbjct: 303 DVVLGKKRFQ---------YEEEIK----KNSKNYDIWFDYLKMEEINGEIEKTREIYER 349
Query: 503 GIALFK-------WP-YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXX 554
I W YI+ +W Y +ERAR ++ +C++ P +
Sbjct: 350 SIGNLPPTNEKKHWKRYIY-LWINYA--LFEELISKDMERARSVYSECIKLIPHKEFSFS 406
Query: 555 XX-XXXXXXXXHGL-ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612
L A +Y +A G P+ ++F+ YI E+ + R +YE
Sbjct: 407 KIWILYANFEIRQLNLDKARLIYGQAIGRN-PKS--KIFDQYIHLEIELGNFDRVRTLYE 463
Query: 613 RAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSF--- 669
+ +E +P+ C KFA++ET+LGE RARAI+ Q P + WK F
Sbjct: 464 KYLEIMPDN-CDAWC-KFAQLETELGETVRARAIFELAIQ--QPNLDRPE-VVWKDFIDS 518
Query: 670 EITHGNEDTMREMLR 684
EI D ++++ R
Sbjct: 519 EIQLKQFDFVKQLYR 533
Score = 140 (54.3 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 69/296 (23%), Positives = 133/296 (44%)
Query: 34 WLRYI---EHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYED 90
W +Y + N P A I+ER ++ P + W +YLK ++ K+ +E+
Sbjct: 146 WFKYTFMEDMLGNYPAA--RAIFERWMQWKPEP-QAWNSYLKFEQRL---KL-----FEN 194
Query: 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH-HRVWPLYL 149
FE+ + +H + W+ Y +F I R +F RA+ L + +++ +
Sbjct: 195 TRLIFEK-YILVHPYIKTWIKYTKFEERLGNIENARTIFQRAIEFLGEDGNDEQLFIAFA 253
Query: 150 SFVKSHAVPETAVRVFRRYLKLFPED-AEDYIEYLSSIERLDEAAVKLAYIV-NKESF-- 205
F + + E A +++ + P+ A+D + ++ E+ + + +V K+ F
Sbjct: 254 KFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQY 313
Query: 206 ---VSKHGKSNHQLWNELCEM--ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLAD 260
+ K+ K N+ +W + +M I+ +K R + +I G L T++ H W
Sbjct: 314 EEEIKKNSK-NYDIWFDYLKMEEINGEIEKTREIYERSI--GNLPP-TNEKKH-WKRYIY 368
Query: 261 YYIRSGLFE--------RARDIYEEAIQTVTTVR-DFTQVFDAYAQFE--ELSLNK 305
+I LFE RAR +Y E I+ + F++++ YA FE +L+L+K
Sbjct: 369 LWINYALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDK 424
Score = 131 (51.2 bits), Expect = 8.3e-18, Sum P(3) = 8.3e-18
Identities = 75/306 (24%), Positives = 131/306 (42%)
Query: 8 GIYTTENEEDLPYE---EEILRNPFSVKHWLRYIEHKKNAPKAIINTIY--ERSLKELPG 62
G+ +N+ P + E+ILR V H E+++ PKA + + L++
Sbjct: 8 GVSKVKNKSAAPVQITAEQILR----VAH-----ENQQTLPKAPPKQVITDQEELEDYRL 58
Query: 63 SYKLWYNYLKLRRKQVKGKVITDPSYED-------VNNTFERSLVFMHKMPRIWLDYGRF 115
+ Y L R ++ I ++E+ + FER L H++P +W+ Y
Sbjct: 59 RKRQQYESLLGRNRKTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHRIPTVWIKYAEM 118
Query: 116 LMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR-VFRRYLKLFPE 174
M I R+++DRA+ LP ++W Y +F++ A R +F R+++ PE
Sbjct: 119 EMKNKNINLARNIWDRAVCLLPRVS--QLWFKY-TFMEDMLGNYPAARAIFERWMQWKPE 175
Query: 175 DAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSL 234
+ + YL +RL + I K V + K+ + + + E + N + R++
Sbjct: 176 P-QAWNSYLKFEQRL-KLFENTRLIFEKYILVHPYIKTWIK-YTKFEERLG-NIENARTI 231
Query: 235 NVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDA 294
AI G +QL + + Y ERAR IY+ AI V R +FD
Sbjct: 232 FQRAIEFLGEDGNDEQLFIAFAKFEEKYKE---IERARVIYKYAIDHVPKSRA-KDLFDT 287
Query: 295 YAQFEE 300
+ FE+
Sbjct: 288 FTNFEK 293
Score = 115 (45.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 37/179 (20%), Positives = 77/179 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELP--GSYKLWYNYLKLRRK 76
YEEEI +N + W Y++ ++ N IYERS+ LP K W Y+ L
Sbjct: 313 YEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWKRYIYLWIN 372
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFDRA 132
+ + E + + + + HK +IW+ Y F + Q + + R ++ +A
Sbjct: 373 YALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARLIYGQA 432
Query: 133 LRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDE 191
+ P + +++ Y+ + ++ +YL++ P++ + + ++ L E
Sbjct: 433 IGRNPKS---KIFDQYIHLEIELGNFDRVRTLYEKYLEIMPDNCDAWCKFAQLETELGE 488
Score = 115 (45.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 49/223 (21%), Positives = 96/223 (43%)
Query: 483 LWSLYADLE---ESFGTFK-AYEKGIALFKWPYIFDIW--NTYLTKFLSRYGGTKLERAR 536
+W YA++E ++ + +++ + L P + +W T++ L Y AR
Sbjct: 111 VWIKYAEMEMKNKNINLARNIWDRAVCLL--PRVSQLWFKYTFMEDMLGNYPA-----AR 163
Query: 537 DLFEQCLEACP-PRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFNIYI 595
+FE+ ++ P P+ L + ++E+ +L + + Y
Sbjct: 164 AIFERWMQWKPEPQAWNSYLKFEQRLK----LFENTRLIFEKY---ILVHPYIKTWIKYT 216
Query: 596 KKAAEIYGIPKTRQIYERAIESLPEEPT-RQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654
K + I R I++RAIE L E+ Q+ + FA+ E K EI+RAR IY +
Sbjct: 217 KFEERLGNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHV 276
Query: 655 DPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + +FE HG+ + +++ K+ + QY ++
Sbjct: 277 PKSRAKDLFDTFTNFEKQHGDRIGIEDVVLGKK--RFQYEEEI 317
Score = 100 (40.3 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 50/210 (23%), Positives = 85/210 (40%)
Query: 477 VYKSIKLWSLYADLEESFGTFK----AYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKL 532
V+ IK W Y EE G + +++ I + KF +Y ++
Sbjct: 205 VHPYIKTWIKYTKFEERLGNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKY--KEI 262
Query: 533 ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEM---FE 589
ERAR +++ ++ P HG V EE+ +
Sbjct: 263 ERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSK 322
Query: 590 MFNIYIK--KAAEIYG-IPKTRQIYERAIESLPEEPTRQ---------MCLKFAEMETKL 637
++I+ K EI G I KTR+IYER+I +LP PT + + + +A E +
Sbjct: 323 NYDIWFDYLKMEEINGEIEKTREIYERSIGNLP--PTNEKKHWKRYIYLWINYALFEELI 380
Query: 638 G-EIDRARAIYAHCSQICDPRVTAGFWAAW 666
+++RAR++Y+ C ++ P F W
Sbjct: 381 SKDMERARSVYSECIKLI-PHKEFSFSKIW 409
Score = 64 (27.6 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLV-PYTKVEDLATVWCEWAELELRAGQEE 447
W + KF + E+ RLIF+K LV PY K W ++ + E R G E
Sbjct: 179 WNSYLKFEQRLKLFENTRLIFEKYILVHPYIKT------WIKYTKFEERLGNIE 226
Score = 61 (26.5 bits), Expect = 8.3e-18, Sum P(3) = 8.3e-18
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 665 AWKSFEITHGNEDTMREMLR 684
+WK FE T GN++T+ ++L+
Sbjct: 619 SWKEFEQTFGNQETLNQVLK 638
Score = 59 (25.8 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 352 HNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411
++ L++ +R++LF+ L I Y V P + WI++ KF E +E+A
Sbjct: 180 NSYLKFEQRLKLFENTRL-IFEKYI----LVHPYIKT------WIKYTKFEERLGNIENA 228
Query: 412 RLIFDKA 418
R IF +A
Sbjct: 229 RTIFQRA 235
Score = 59 (25.8 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR 442
K ++I++ + E L AR +F++ + + + TVW ++AE+E++
Sbjct: 73 KTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHR----IPTVWIKYAEMEMK 121
Score = 53 (23.7 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKAT-LVPYTKVEDLATVWCEWAELE 440
++ T+WI++ + N + AR I+D+A L+P +V L W ++ +E
Sbjct: 107 RIPTVWIKYAEMEMKNKNINLARNIWDRAVCLLP--RVSQL---WFKYTFME 153
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 172 (65.6 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 82/323 (25%), Positives = 135/323 (41%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXX 453
L++ F KF E + E R+I+ K L +K +D ++ + E + G
Sbjct: 403 LYVAFAKFEENQKEFERVRVIY-KYALDRISK-QDAQELFKNYTIFEKKFGDRRGIEDII 460
Query: 454 XXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFGTFKA----YEKGIALFK- 508
Y +E V+A + + W Y L ES +A YE+ IA
Sbjct: 461 VSKRRFQ-----YEEE---VKANPH-NYDAWFDYLRLVESDAEAEAVREVYERAIANVPP 511
Query: 509 ------WP-YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXX 561
W YI+ +W Y ER R +++ LE P +
Sbjct: 512 IQEKRHWKRYIY-LWINYA--LYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYA 568
Query: 562 XXXHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620
+ + +++ RA G + + ++F +YI+ ++ + R++YE+ +E PE
Sbjct: 569 QFE--IRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPE 626
Query: 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDT 678
T +KFAE+ET LG+IDRARAIY I PR+ W ++ FEI E+T
Sbjct: 627 NCTSW--IKFAELETILGDIDRARAIYELA--ISQPRLDMPEVLWKSYIDFEIEQ--EET 680
Query: 679 MREMLRIKRSVQAQYNTQVLFTF 701
R +R +Q + +V +F
Sbjct: 681 ERTRNLYRRLLQRTQHVKVWISF 703
Score = 149 (57.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 60/296 (20%), Positives = 128/296 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEH-KKNAPKAIINTIYERSLKELPG--SYKLW--YNYLKLR 74
YEEE+ NP + W Y+ + +A + +YER++ +P + W Y YL +
Sbjct: 468 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWIN 527
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFD 130
+ DP E ++ SL + HK ++W+ Y +F + Q ++ R
Sbjct: 528 YALYEELEAKDP--ERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALG 585
Query: 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLD 190
++ P ++++ +Y+ + +++ ++L+ PE+ +I++ + +E +
Sbjct: 586 TSIGKCP---KNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKF-AELETI- 640
Query: 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250
+ A + + + LW + + + R+ N + R L+R T
Sbjct: 641 LGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRN---LYRRLLQR-TQH 696
Query: 251 LGHLWNSLADYYIRSGL---FERARDIYEEAIQTVTTVRDFTQ---VFDAYAQFEE 300
+ +W S A + + SG + R IYEEA +T+ + + + +++ FEE
Sbjct: 697 V-KVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEE 751
Score = 136 (52.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 63/261 (24%), Positives = 110/261 (42%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE-RSLVFMHKMPRIWLD 111
YE +K P +Y W++YL+L + + + + + N + + +W++
Sbjct: 468 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWIN 527
Query: 112 YGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSFVKSHAVPETAVRVFRRY 168
Y + ++ +TR V+ +L +P + ++W LY F A R
Sbjct: 528 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTS 587
Query: 169 LKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM--I 224
+ P++ + YIE + D KL Y E F+ + G N W + E+ I
Sbjct: 588 IGKCPKNKLFKVYIELELQLREFDRCR-KL-Y----EKFL-EFGPENCTSWIKFAELETI 640
Query: 225 SQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTT 284
+ D+ R++ AI + L D LW S D+ I ER R++Y +Q
Sbjct: 641 LGDIDRARAIYELAISQPRL----DMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQH 696
Query: 285 VRDFTQVFDAYAQFEELSLNK 305
V+ V+ ++AQFE LS K
Sbjct: 697 VK----VWISFAQFE-LSSGK 712
Score = 134 (52.2 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 65/299 (21%), Positives = 131/299 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
YE + + ++ WL+Y E + KN I++R++ LP + WY Y + +++
Sbjct: 253 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYM--EEM 310
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
G V FER + + + + W Y F + ++ + R +++R + P
Sbjct: 311 LGNVA------GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPD 363
Query: 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERLDE-AAV 194
++ W Y F + HA A +V+ R ++ F ++ D Y+ + E E V
Sbjct: 364 VKN---WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV 420
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG-- 252
++ Y + +SK + +L+ + D+ R + D I+ +Y +++
Sbjct: 421 RVIYKYALDR-ISK--QDAQELFKNYTIFEKKFGDR-RGIE-DIIVSKRRFQYEEEVKAN 475
Query: 253 -HLWNSLADYY--IRSGL-FERARDIYEEAIQTVTTVRD------FTQVFDAYAQFEEL 301
H +++ DY + S E R++YE AI V +++ + ++ YA +EEL
Sbjct: 476 PHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEEL 534
Score = 127 (49.8 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 51/220 (23%), Positives = 99/220 (45%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
+ER+L ++ +WL Y M ++ R+++DRA+ LP + ++ W Y +
Sbjct: 253 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEM 310
Query: 155 HAVPETAVRVFRRYLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKS 212
A +VF R+++ PE+ YI + + +D A + Y E FV H
Sbjct: 311 LGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRA--RTIY----ERFVLVHPDV 364
Query: 213 NHQLWNELCEMISQNPDKIRSLNV-DAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERA 271
+ W + ++ + V + + + D+ HL+ + A + FER
Sbjct: 365 KN--WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDE--HLYVAFAKFEENQKEFERV 420
Query: 272 RDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR-MEEI 310
R IY+ A+ ++ +D ++F Y FE+ ++R +E+I
Sbjct: 421 RVIYKYALDRISK-QDAQELFKNYTIFEKKFGDRRGIEDI 459
Score = 122 (48.0 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 35/165 (21%), Positives = 79/165 (47%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIYERSLKELPGSYKLWYNYLKLRRKQ 77
+E+ I +N + +W++Y + +++ K I +IYER+L + LW Y ++ +
Sbjct: 219 FEDNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERALDVDYRNITLWLKYAEM---E 274
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
+K + + N ++R++ + ++ + W Y + R VF+R + P
Sbjct: 275 MKNRQVNH-----ARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP 329
Query: 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
Q W Y++F + + A ++ R++ + P D +++I+Y
Sbjct: 330 EEQ---AWHSYINFELRYKEVDRARTIYERFVLVHP-DVKNWIKY 370
Score = 122 (48.0 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 64/300 (21%), Positives = 128/300 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPK-AIINTIYERSLKELPGSYKLWYNYL--KLRRK 76
++ I P + W +Y ++ A ++ER ++ P + W++Y+ +LR K
Sbjct: 287 WDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEE-QAWHSYINFELRYK 345
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136
+V + +ER V +H + W+ Y RF R V++RA+
Sbjct: 346 EV----------DRARTIYER-FVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFF 394
Query: 137 PITQHHRVWPLYLSFVKSHAVPET--AVRVFRRYL--KLFPEDAEDYIEYLSSIERL--D 190
H LY++F K + VRV +Y ++ +DA++ + + E+ D
Sbjct: 395 G--DEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGD 452
Query: 191 EAAVKLAYIVNKESFVS----KHGKSNHQLWNELCEMISQNPDK--IRSLNVDAIIRGGL 244
++ IV+K F K N+ W + ++ + + +R + AI
Sbjct: 453 RRGIE-DIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPP 511
Query: 245 ---RRYTDQLGHLWNSLADYY-IRSGLFERARDIYEEAIQTVTTVR-DFTQVFDAYAQFE 299
+R+ + +LW + A Y + + ER R +Y+ +++ + + F +++ YAQFE
Sbjct: 512 IQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFE 571
Score = 108 (43.1 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 54/227 (23%), Positives = 94/227 (41%)
Query: 478 YKSIKLWSLYADLEESFGTFKAYEKGI---ALFKWPYIFDIWN--TYLTKFLSRYGGTKL 532
Y++I LW YA++E + + I A+ P + W TY+ + L G
Sbjct: 261 YRNITLWLKYAEMEMKNRQVN-HARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAG--- 316
Query: 533 ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPE-EMFEMF 591
AR +FE+ +E P AR +YER V P+ + + +
Sbjct: 317 --ARQVFERWMEWQPEEQAWHSYINFELRYKEVDRAR---TIYERFV-LVHPDVKNWIKY 370
Query: 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIYAHC 650
+ +K A Y R++YERA+E +E + + + FA+ E E +R R IY +
Sbjct: 371 ARFEEKHA--Y-FAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA 427
Query: 651 SQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + + FE G+ + +++ KR + QY +V
Sbjct: 428 LDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKR--RFQYEEEV 472
Score = 89 (36.4 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 52/241 (21%), Positives = 90/241 (37%)
Query: 466 YHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK--GIALFKWPYIFDIWNTYLTKF 523
Y E + + + K+W LYA E + G ++ K P ++ Y+
Sbjct: 546 YQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKN-KLFKVYIELE 604
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
L + +R R L+E+ LE P G A A+YE A
Sbjct: 605 LQL---REFDRCRKLYEKFLEFGPENCTSWIKFAELETIL--GDIDRARAIYELAISQPR 659
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET---KLGEI 640
+ ++ YI E +TR +Y R ++ ++ + FA+ E K G +
Sbjct: 660 LDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHV---KVWISFAQFELSSGKEGSL 716
Query: 641 DRARAIYAHCSQI---CDPRVTA-GFWAAWKSFEITHGN-------EDTMREMLRIKRSV 689
+ R IY ++ C+ + +W+SFE G + M E ++ +R V
Sbjct: 717 TKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVKKRRKV 776
Query: 690 Q 690
Q
Sbjct: 777 Q 777
Score = 84 (34.6 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 350 NPHNVLEWHKRVRLFDGKP-LDIIR-TYTEAVKTVDP---KLAVGKLHTLWIEFGKFYEV 404
NPHN W +RL + + +R Y A+ V P K + LWI + + E+
Sbjct: 475 NPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEEL 534
Query: 405 NDQ-LEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
+ E R ++ + L+P+ K A +W +A+ E+R
Sbjct: 535 EAKDPERTRQVYQASLELIPHKKFT-FAKMWILYAQFEIR 573
Score = 76 (31.8 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445
WI++ ++ E +++ AR I+++A V Y + T+W ++AE+E++ Q
Sbjct: 233 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQ 279
Score = 67 (28.6 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 39/209 (18%), Positives = 81/209 (38%)
Query: 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153
TFE ++ + W+ Y ++ +I + R +++RAL ++ +W Y
Sbjct: 218 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV--DYRNITLWLKYAEMEM 275
Query: 154 SHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSN 213
+ A ++ R + P + + +Y E L A E ++ +
Sbjct: 276 KNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVF---ERWME--WQPE 330
Query: 214 HQLWNELC--EMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERA 271
Q W+ E+ + D+ R++ ++ + D W A + + F A
Sbjct: 331 EQAWHSYINFELRYKEVDRARTIYERFVLV-----HPDVKN--WIKYARFEEKHAYFAHA 383
Query: 272 RDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
R +YE A++ ++ A+A+FEE
Sbjct: 384 RKVYERAVEFFGDEHMDEHLYVAFAKFEE 412
Score = 58 (25.5 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 372 IRTYTEAVKTVDPKLAVGKLH-TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLA 430
+R + K + L G + T WI+F + + ++ AR I++ A P + ++
Sbjct: 607 LREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEV- 665
Query: 431 TVWCEWAELELRAGQEE 447
+W + + E+ QEE
Sbjct: 666 -LWKSYIDFEIE--QEE 679
Score = 50 (22.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 351 PHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408
P N W K L G +D R E + P+L + ++ LW + F ++
Sbjct: 625 PENCTSWIKFAELETILGD-IDRARAIYELAIS-QPRLDMPEV--LWKSYIDFEIEQEET 680
Query: 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446
E R ++ + L+ T+ VW +A+ EL +G+E
Sbjct: 681 ERTRNLYRR--LLQRTQH---VKVWISFAQFELSSGKE 713
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 172 (65.6 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 82/323 (25%), Positives = 135/323 (41%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXX 453
L++ F KF E + E R+I+ K L +K +D ++ + E + G
Sbjct: 415 LYVAFAKFEENQKEFERVRVIY-KYALDRISK-QDAQELFKNYTIFEKKFGDRRGIEDII 472
Query: 454 XXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFGTFKA----YEKGIALFK- 508
Y +E V+A + + W Y L ES +A YE+ IA
Sbjct: 473 VSKRRFQ-----YEEE---VKANPH-NYDAWFDYLRLVESDAEAEAVREVYERAIANVPP 523
Query: 509 ------WP-YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXX 561
W YI+ +W Y ER R +++ LE P +
Sbjct: 524 IQEKRHWKRYIY-LWINYA--LYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYA 580
Query: 562 XXXHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620
+ + +++ RA G + + ++F +YI+ ++ + R++YE+ +E PE
Sbjct: 581 QFE--IRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPE 638
Query: 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDT 678
T +KFAE+ET LG+IDRARAIY I PR+ W ++ FEI E+T
Sbjct: 639 NCTSW--IKFAELETILGDIDRARAIYELA--ISQPRLDMPEVLWKSYIDFEIEQ--EET 692
Query: 679 MREMLRIKRSVQAQYNTQVLFTF 701
R +R +Q + +V +F
Sbjct: 693 ERTRNLYRRLLQRTQHVKVWISF 715
Score = 149 (57.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 60/296 (20%), Positives = 128/296 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEH-KKNAPKAIINTIYERSLKELPG--SYKLW--YNYLKLR 74
YEEE+ NP + W Y+ + +A + +YER++ +P + W Y YL +
Sbjct: 480 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWIN 539
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFD 130
+ DP E ++ SL + HK ++W+ Y +F + Q ++ R
Sbjct: 540 YALYEELEAKDP--ERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALG 597
Query: 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLD 190
++ P ++++ +Y+ + +++ ++L+ PE+ +I++ + +E +
Sbjct: 598 TSIGKCP---KNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKF-AELETI- 652
Query: 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250
+ A + + + LW + + + R+ N + R L+R T
Sbjct: 653 LGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRN---LYRRLLQR-TQH 708
Query: 251 LGHLWNSLADYYIRSGL---FERARDIYEEAIQTVTTVRDFTQ---VFDAYAQFEE 300
+ +W S A + + SG + R IYEEA +T+ + + + +++ FEE
Sbjct: 709 V-KVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEE 763
Score = 136 (52.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 63/261 (24%), Positives = 110/261 (42%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE-RSLVFMHKMPRIWLD 111
YE +K P +Y W++YL+L + + + + + N + + +W++
Sbjct: 480 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWIN 539
Query: 112 YGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSFVKSHAVPETAVRVFRRY 168
Y + ++ +TR V+ +L +P + ++W LY F A R
Sbjct: 540 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTS 599
Query: 169 LKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM--I 224
+ P++ + YIE + D KL Y E F+ + G N W + E+ I
Sbjct: 600 IGKCPKNKLFKVYIELELQLREFDRCR-KL-Y----EKFL-EFGPENCTSWIKFAELETI 652
Query: 225 SQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTT 284
+ D+ R++ AI + L D LW S D+ I ER R++Y +Q
Sbjct: 653 LGDIDRARAIYELAISQPRL----DMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQH 708
Query: 285 VRDFTQVFDAYAQFEELSLNK 305
V+ V+ ++AQFE LS K
Sbjct: 709 VK----VWISFAQFE-LSSGK 724
Score = 134 (52.2 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 65/299 (21%), Positives = 131/299 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
YE + + ++ WL+Y E + KN I++R++ LP + WY Y + +++
Sbjct: 265 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYM--EEM 322
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
G V FER + + + + W Y F + ++ + R +++R + P
Sbjct: 323 LGNVA------GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPD 375
Query: 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERLDE-AAV 194
++ W Y F + HA A +V+ R ++ F ++ D Y+ + E E V
Sbjct: 376 VKN---WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV 432
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG-- 252
++ Y + +SK + +L+ + D+ R + D I+ +Y +++
Sbjct: 433 RVIYKYALDR-ISK--QDAQELFKNYTIFEKKFGDR-RGIE-DIIVSKRRFQYEEEVKAN 487
Query: 253 -HLWNSLADYY--IRSGL-FERARDIYEEAIQTVTTVRD------FTQVFDAYAQFEEL 301
H +++ DY + S E R++YE AI V +++ + ++ YA +EEL
Sbjct: 488 PHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEEL 546
Score = 127 (49.8 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 51/220 (23%), Positives = 99/220 (45%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
+ER+L ++ +WL Y M ++ R+++DRA+ LP + ++ W Y +
Sbjct: 265 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEM 322
Query: 155 HAVPETAVRVFRRYLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKS 212
A +VF R+++ PE+ YI + + +D A + Y E FV H
Sbjct: 323 LGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRA--RTIY----ERFVLVHPDV 376
Query: 213 NHQLWNELCEMISQNPDKIRSLNV-DAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERA 271
+ W + ++ + V + + + D+ HL+ + A + FER
Sbjct: 377 KN--WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDE--HLYVAFAKFEENQKEFERV 432
Query: 272 RDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR-MEEI 310
R IY+ A+ ++ +D ++F Y FE+ ++R +E+I
Sbjct: 433 RVIYKYALDRISK-QDAQELFKNYTIFEKKFGDRRGIEDI 471
Score = 122 (48.0 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 35/165 (21%), Positives = 79/165 (47%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIYERSLKELPGSYKLWYNYLKLRRKQ 77
+E+ I +N + +W++Y + +++ K I +IYER+L + LW Y ++ +
Sbjct: 231 FEDNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERALDVDYRNITLWLKYAEM---E 286
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
+K + + N ++R++ + ++ + W Y + R VF+R + P
Sbjct: 287 MKNRQVNH-----ARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP 341
Query: 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
Q W Y++F + + A ++ R++ + P D +++I+Y
Sbjct: 342 EEQ---AWHSYINFELRYKEVDRARTIYERFVLVHP-DVKNWIKY 382
Score = 122 (48.0 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 64/300 (21%), Positives = 128/300 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPK-AIINTIYERSLKELPGSYKLWYNYL--KLRRK 76
++ I P + W +Y ++ A ++ER ++ P + W++Y+ +LR K
Sbjct: 299 WDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEE-QAWHSYINFELRYK 357
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136
+V + +ER V +H + W+ Y RF R V++RA+
Sbjct: 358 EV----------DRARTIYER-FVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFF 406
Query: 137 PITQHHRVWPLYLSFVKSHAVPET--AVRVFRRYL--KLFPEDAEDYIEYLSSIERL--D 190
H LY++F K + VRV +Y ++ +DA++ + + E+ D
Sbjct: 407 G--DEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGD 464
Query: 191 EAAVKLAYIVNKESFVS----KHGKSNHQLWNELCEMISQNPDK--IRSLNVDAIIRGGL 244
++ IV+K F K N+ W + ++ + + +R + AI
Sbjct: 465 RRGIE-DIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPP 523
Query: 245 ---RRYTDQLGHLWNSLADYY-IRSGLFERARDIYEEAIQTVTTVR-DFTQVFDAYAQFE 299
+R+ + +LW + A Y + + ER R +Y+ +++ + + F +++ YAQFE
Sbjct: 524 IQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFE 583
Score = 108 (43.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 54/227 (23%), Positives = 94/227 (41%)
Query: 478 YKSIKLWSLYADLEESFGTFKAYEKGI---ALFKWPYIFDIWN--TYLTKFLSRYGGTKL 532
Y++I LW YA++E + + I A+ P + W TY+ + L G
Sbjct: 273 YRNITLWLKYAEMEMKNRQVN-HARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAG--- 328
Query: 533 ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPE-EMFEMF 591
AR +FE+ +E P AR +YER V P+ + + +
Sbjct: 329 --ARQVFERWMEWQPEEQAWHSYINFELRYKEVDRAR---TIYERFV-LVHPDVKNWIKY 382
Query: 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIYAHC 650
+ +K A Y R++YERA+E +E + + + FA+ E E +R R IY +
Sbjct: 383 ARFEEKHA--Y-FAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA 439
Query: 651 SQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + + FE G+ + +++ KR + QY +V
Sbjct: 440 LDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKR--RFQYEEEV 484
Score = 89 (36.4 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 52/241 (21%), Positives = 90/241 (37%)
Query: 466 YHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK--GIALFKWPYIFDIWNTYLTKF 523
Y E + + + K+W LYA E + G ++ K P ++ Y+
Sbjct: 558 YQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKN-KLFKVYIELE 616
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
L + +R R L+E+ LE P G A A+YE A
Sbjct: 617 LQL---REFDRCRKLYEKFLEFGPENCTSWIKFAELETIL--GDIDRARAIYELAISQPR 671
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET---KLGEI 640
+ ++ YI E +TR +Y R ++ ++ + FA+ E K G +
Sbjct: 672 LDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHV---KVWISFAQFELSSGKEGSL 728
Query: 641 DRARAIYAHCSQI---CDPRVTA-GFWAAWKSFEITHGN-------EDTMREMLRIKRSV 689
+ R IY ++ C+ + +W+SFE G + M E ++ +R V
Sbjct: 729 TKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVKKRRKV 788
Query: 690 Q 690
Q
Sbjct: 789 Q 789
Score = 84 (34.6 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 350 NPHNVLEWHKRVRLFDGKP-LDIIR-TYTEAVKTVDP---KLAVGKLHTLWIEFGKFYEV 404
NPHN W +RL + + +R Y A+ V P K + LWI + + E+
Sbjct: 487 NPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEEL 546
Query: 405 NDQ-LEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
+ E R ++ + L+P+ K A +W +A+ E+R
Sbjct: 547 EAKDPERTRQVYQASLELIPHKKFT-FAKMWILYAQFEIR 585
Score = 76 (31.8 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445
WI++ ++ E +++ AR I+++A V Y + T+W ++AE+E++ Q
Sbjct: 245 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQ 291
Score = 67 (28.6 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 39/209 (18%), Positives = 81/209 (38%)
Query: 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153
TFE ++ + W+ Y ++ +I + R +++RAL ++ +W Y
Sbjct: 230 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV--DYRNITLWLKYAEMEM 287
Query: 154 SHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSN 213
+ A ++ R + P + + +Y E L A E ++ +
Sbjct: 288 KNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVF---ERWME--WQPE 342
Query: 214 HQLWNELC--EMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERA 271
Q W+ E+ + D+ R++ ++ + D W A + + F A
Sbjct: 343 EQAWHSYINFELRYKEVDRARTIYERFVLV-----HPDVKN--WIKYARFEEKHAYFAHA 395
Query: 272 RDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
R +YE A++ ++ A+A+FEE
Sbjct: 396 RKVYERAVEFFGDEHMDEHLYVAFAKFEE 424
Score = 58 (25.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 372 IRTYTEAVKTVDPKLAVGKLH-TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLA 430
+R + K + L G + T WI+F + + ++ AR I++ A P + ++
Sbjct: 619 LREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEV- 677
Query: 431 TVWCEWAELELRAGQEE 447
+W + + E+ QEE
Sbjct: 678 -LWKSYIDFEIE--QEE 691
Score = 50 (22.7 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 351 PHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408
P N W K L G +D R E + P+L + ++ LW + F ++
Sbjct: 637 PENCTSWIKFAELETILGD-IDRARAIYELAIS-QPRLDMPEV--LWKSYIDFEIEQEET 692
Query: 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446
E R ++ + L+ T+ VW +A+ EL +G+E
Sbjct: 693 ERTRNLYRR--LLQRTQH---VKVWISFAQFELSSGKE 725
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 168 (64.2 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 81/323 (25%), Positives = 132/323 (40%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXX 453
L++ F KF E + E R+I+ K L K +D ++ + E + G
Sbjct: 271 LYVAFAKFEENQKEFERVRVIY-KYALDRIPK-QDAQNLFKNYTIFEKKFGDRRGIEDII 328
Query: 454 XXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG---TFK-AYEKGIALFK- 508
Y +E V+A + + W Y L ES T + YE+ IA
Sbjct: 329 VSKRRFQ-----YEEE---VKANPH-NYDAWFDYLRLVESDADAETVREVYERAIANVPP 379
Query: 509 ------WP-YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXX 561
W YI+ +W Y ER R +++ C+E P +
Sbjct: 380 IQEKRYWKRYIY-LWINYA--LYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYA 436
Query: 562 XXXHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620
+ + + + RA G + + ++F YI+ ++ + R++YE+ +E PE
Sbjct: 437 QFE--IRQKNLPLARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFAPE 494
Query: 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDT 678
T +KFAE+ET LG+IDRARAIY I PR+ W ++ FEI +
Sbjct: 495 NCTSW--IKFAELETILGDIDRARAIYELA--ISQPRLDMPEVLWKSYIDFEIEQEEYEK 550
Query: 679 MREMLRIKRSVQAQYNTQVLFTF 701
R + R R +Q + +V +F
Sbjct: 551 TRNLYR--RLLQRTQHVKVWISF 571
Score = 143 (55.4 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 62/262 (23%), Positives = 113/262 (43%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE-RSLVFMHKMPRIWLD 111
YE +K P +Y W++YL+L + + + + N + + + +W++
Sbjct: 336 YEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWIN 395
Query: 112 YGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSF-VKSHAVPETAVRVFRR 167
Y + ++ +TR V+ + LP + ++W LY F ++ +P A R
Sbjct: 396 YALYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLP-LARRALGT 454
Query: 168 YLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM-- 223
+ P++ + YIE + D KL Y E F+ + N W + E+
Sbjct: 455 SIGKCPKNKLFKGYIELELQLREFDRCR-KL-Y----EKFL-EFAPENCTSWIKFAELET 507
Query: 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283
I + D+ R++ AI + L D LW S D+ I +E+ R++Y +Q
Sbjct: 508 ILGDIDRARAIYELAISQPRL----DMPEVLWKSYIDFEIEQEEYEKTRNLYRRLLQRTQ 563
Query: 284 TVRDFTQVFDAYAQFEELSLNK 305
V+ V+ ++AQFE LS K
Sbjct: 564 HVK----VWISFAQFE-LSAGK 580
Score = 134 (52.2 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 58/296 (19%), Positives = 125/296 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEH-KKNAPKAIINTIYERSLKELPG--SYKLW--YNYLKLR 74
YEEE+ NP + W Y+ + +A + +YER++ +P + W Y YL +
Sbjct: 336 YEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWIN 395
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFD 130
+ DP E ++ + + HK +IWL Y +F + Q + R
Sbjct: 396 YALYEELEAKDP--ERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLPLARRALG 453
Query: 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLD 190
++ P ++++ Y+ + +++ ++L+ PE+ +I++ + +E +
Sbjct: 454 TSIGKCP---KNKLFKGYIELELQLREFDRCRKLYEKFLEFAPENCTSWIKF-AELETI- 508
Query: 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250
+ A + + + LW + + + ++ N + R L+R T
Sbjct: 509 LGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEEYEKTRN---LYRRLLQR-TQH 564
Query: 251 LGHLWNSLADYYIRSGLFE---RARDIYEEAIQTVTTVRDFTQ---VFDAYAQFEE 300
+ +W S A + + +G E + R IYEEA + + + + + +++ FEE
Sbjct: 565 V-KVWISFAQFELSAGKEESLSKCRQIYEEANKAMRNCEEKEERVMLLESWKTFEE 619
Score = 121 (47.7 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 68/301 (22%), Positives = 127/301 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
YE + + +V WL+Y E + KN I++R++ LP + WY Y + +++
Sbjct: 120 YERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYM--EEM 177
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
G V FER + + + + W Y F + ++ + R ++ AL +
Sbjct: 178 LGNVAGS------RQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYI----ALLV 226
Query: 139 TQHHRV--WPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERLDE-A 192
H V W Y F + H A +V+ R ++ F E+ D Y+ + E E
Sbjct: 227 IVHPDVKNWIKYARFEEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFE 286
Query: 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252
V++ Y + + K N L+ + D+ R + D I+ +Y +++
Sbjct: 287 RVRVIYKYALDR-IPKQDAQN--LFKNYTIFEKKFGDR-RGIE-DIIVSKRRFQYEEEVK 341
Query: 253 ---HLWNSLADYY--IRSGL-FERARDIYEEAIQTVTTVRD------FTQVFDAYAQFEE 300
H +++ DY + S E R++YE AI V +++ + ++ YA +EE
Sbjct: 342 ANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWINYALYEE 401
Query: 301 L 301
L
Sbjct: 402 L 402
Score = 118 (46.6 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 51/220 (23%), Positives = 98/220 (44%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
+ER+L ++ +WL Y M ++ R+++DRA+ LP + ++ W Y +
Sbjct: 120 YERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEM 177
Query: 155 HAVPETAVRVFRRYLKLFPEDA--EDYIEYLSSIERLDEA-AVKLAYIVNKESFVSKHGK 211
+ +VF R+++ PE+ YI + + +D A + +A +V V K+
Sbjct: 178 LGNVAGSRQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYIALLVIVHPDV-KNWI 236
Query: 212 SNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERA 271
+ + C K+ V+ G + D+ HL+ + A + FER
Sbjct: 237 KYARFEEKHCYFAHAR--KVYERAVEFF---G-EEHMDE--HLYVAFAKFEENQKEFERV 288
Query: 272 RDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR-MEEI 310
R IY+ A+ + +D +F Y FE+ ++R +E+I
Sbjct: 289 RVIYKYALDRIPK-QDAQNLFKNYTIFEKKFGDRRGIEDI 327
Score = 113 (44.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 34/165 (20%), Positives = 77/165 (46%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIYERSLKELPGSYKLWYNYLKLRRKQ 77
+E+ I +N + +W++Y + +++ K I +IYER+L + LW Y ++ +
Sbjct: 86 FEDNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERALDVDYRNVTLWLKYAEM---E 141
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
+K + + N ++R++ + ++ + W Y + +R VF+R + P
Sbjct: 142 MKNRQVNH-----ARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGSRQVFERWMEWQP 196
Query: 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
Q W Y++F + + A ++ L + D +++I+Y
Sbjct: 197 EEQ---AWHSYINFELRYKEVDRARTIYIALLVIVHPDVKNWIKY 238
Score = 98 (39.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 49/226 (21%), Positives = 89/226 (39%)
Query: 478 YKSIKLWSLYADLEESFGTFKAYEKGI---ALFKWPYIFDIWN--TYLTKFLSRYGGTKL 532
Y+++ LW YA++E + + I A+ P + W TY+ + L G+
Sbjct: 128 YRNVTLWLKYAEMEMKNRQVN-HARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGS-- 184
Query: 533 ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFN 592
R +FE+ +E P AR +Y V P+ + +
Sbjct: 185 ---RQVFERWMEWQPEEQAWHSYINFELRYKEVDRAR---TIYIALLVIVHPD--VKNWI 236
Query: 593 IYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIYAHCS 651
Y + + R++YERA+E EE + + + FA+ E E +R R IY +
Sbjct: 237 KYARFEEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFERVRVIYKYAL 296
Query: 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + + FE G+ + +++ KR + QY +V
Sbjct: 297 DRIPKQDAQNLFKNYTIFEKKFGDRRGIEDIIVSKR--RFQYEEEV 340
Score = 97 (39.2 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 52/238 (21%), Positives = 92/238 (38%)
Query: 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEK--GIALFKWPYIFDIWNTYLTKFLSRYG 528
E + + + K+W LYA E + G ++ K P ++ Y+ L
Sbjct: 419 ELLPHKKFTFAKIWLLYAQFEIRQKNLPLARRALGTSIGKCPKN-KLFKGYIELELQL-- 475
Query: 529 GTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMF 588
+ +R R L+E+ LE P G A A+YE A +
Sbjct: 476 -REFDRCRKLYEKFLEFAPENCTSWIKFAELETIL--GDIDRARAIYELAISQPRLDMPE 532
Query: 589 EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGE---IDRARA 645
++ YI E KTR +Y R ++ ++ + FA+ E G+ + + R
Sbjct: 533 VLWKSYIDFEIEQEEYEKTRNLYRRLLQRTQHV---KVWISFAQFELSAGKEESLSKCRQ 589
Query: 646 IYAHCSQI---CDPRVT-AGFWAAWKSFEITHGNEDT-------MREMLRIKRSVQAQ 692
IY ++ C+ + +WK+FE G + T M E ++ +R +QA+
Sbjct: 590 IYEEANKAMRNCEEKEERVMLLESWKTFEEEFGTDSTKERIEKLMPEKIKKRRKLQAE 647
Score = 83 (34.3 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 27/100 (27%), Positives = 45/100 (45%)
Query: 350 NPHNVLEWHKRVRLFDGKP-LDIIR-TYTEAVKTVDP---KLAVGKLHTLWIEFGKFYEV 404
NPHN W +RL + + +R Y A+ V P K + LWI + + E+
Sbjct: 343 NPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWINYALYEEL 402
Query: 405 NDQ-LEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
+ E R ++ L+P+ K A +W +A+ E+R
Sbjct: 403 EAKDPERTRQVYQACIELLPHKKFT-FAKIWLLYAQFEIR 441
Score = 77 (32.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445
WI++ ++ E +++ AR I+++A V Y V T+W ++AE+E++ Q
Sbjct: 100 WIKYAQWEESLKEIQRARSIYERALDVDYRNV----TLWLKYAEMEMKNRQ 146
Score = 70 (29.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 39/209 (18%), Positives = 82/209 (39%)
Query: 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153
TFE ++ + W+ Y ++ +I + R +++RAL ++ +W Y
Sbjct: 85 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV--DYRNVTLWLKYAEMEM 142
Query: 154 SHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSN 213
+ A ++ R + P + + +Y E L A E ++ +
Sbjct: 143 KNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGSRQVF---ERWME--WQPE 197
Query: 214 HQLWNELC--EMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERA 271
Q W+ E+ + D+ R++ + ++ + D W A + + F A
Sbjct: 198 EQAWHSYINFELRYKEVDRARTIYIALLVIV----HPDVKN--WIKYARFEEKHCYFAHA 251
Query: 272 RDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
R +YE A++ ++ A+A+FEE
Sbjct: 252 RKVYERAVEFFGEEHMDEHLYVAFAKFEE 280
Score = 64 (27.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 36/154 (23%), Positives = 59/154 (38%)
Query: 351 PHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408
P N W K L G +D R E + P+L + ++ LW + F ++
Sbjct: 493 PENCTSWIKFAELETILGD-IDRARAIYELAIS-QPRLDMPEV--LWKSYIDFEIEQEEY 548
Query: 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHD 468
E R ++ + L+ T+ VW +A+ EL AG+EE +
Sbjct: 549 EKTRNLYRR--LLQRTQH---VKVWISFAQFELSAGKEESLSKCRQIYEEANKAMRNCEE 603
Query: 469 EAETVQARVYKSIKLWSLYADLEESFGTFKAYEK 502
+ E V ++ W + EE FGT E+
Sbjct: 604 KEERVML-----LESWKTF---EEEFGTDSTKER 629
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 150 (57.9 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 80/323 (24%), Positives = 132/323 (40%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXX 453
L++ F KF E + E R+I+ K L +K ++ ++ + E + G
Sbjct: 295 LYVAFAKFEENQKEFERVRVIY-KYALDRISK-QEAQELFKNYTIFEKKFGDRRGIEDII 352
Query: 454 XXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG---TFK-AYEKGIALFK- 508
Y +E V+A + + W Y L ES T + YE+ IA
Sbjct: 353 VSKRRFQ-----YEEE---VKANPH-NYDAWFDYLRLVESDAEAETVREVYERAIANVPP 403
Query: 509 ------WP-YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXX 561
W YI+ +W Y ER R +++ LE P +
Sbjct: 404 IQEKRHWKRYIY-LWVNYA--LYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYA 460
Query: 562 XXXHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620
+ + + RA G + + ++F YI+ ++ + R++YE+ +E PE
Sbjct: 461 QFE--IRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE 518
Query: 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDT 678
T +KFAE+ET LG+I+RARAIY I PR+ W ++ FEI E+T
Sbjct: 519 NCTSW--IKFAELETILGDIERARAIYELA--ISQPRLDMPEVLWKSYIDFEIEQ--EET 572
Query: 679 MREMLRIKRSVQAQYNTQVLFTF 701
R +R +Q + +V +F
Sbjct: 573 ERTRNLYRRLLQRTQHVKVWISF 595
Score = 141 (54.7 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 57/294 (19%), Positives = 125/294 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEH-KKNAPKAIINTIYERSLKELPG--SYKLWYNYLKLRRK 76
YEEE+ NP + W Y+ + +A + +YER++ +P + W Y+ L
Sbjct: 360 YEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVN 419
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFDRA 132
+ + E ++ SL + HK ++WL Y +F + Q + R +
Sbjct: 420 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALGTS 479
Query: 133 LRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEA 192
+ P ++++ Y+ + +++ ++L+ PE+ +I++ + +E +
Sbjct: 480 IGKCP---KNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKF-AELETI-LG 534
Query: 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252
++ A + + + LW + + + R+ N + R L+R T +
Sbjct: 535 DIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRN---LYRRLLQR-TQHV- 589
Query: 253 HLWNSLADYYIRS---GLFERARDIYEEAIQTVTTVRDFTQ---VFDAYAQFEE 300
+W S A + + S G + R IYEEA +T+ + + + +++ FE+
Sbjct: 590 KVWISFAQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFED 643
Score = 137 (53.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 63/262 (24%), Positives = 114/262 (43%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE-RSLVFMHKMPRIWLD 111
YE +K P +Y W++YL+L + + + + + N + + +W++
Sbjct: 360 YEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVN 419
Query: 112 YGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSF-VKSHAVPETAVRVFRR 167
Y + ++ +TR V+ +L +P + ++W LY F ++ +P A R
Sbjct: 420 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLP-FARRALGT 478
Query: 168 YLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM-- 223
+ P++ + YIE + D KL Y E F+ + G N W + E+
Sbjct: 479 SIGKCPKNKLFKGYIELELQLREFDRCR-KL-Y----EKFL-EFGPENCTSWIKFAELET 531
Query: 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283
I + ++ R++ AI + L D LW S D+ I ER R++Y +Q
Sbjct: 532 ILGDIERARAIYELAISQPRL----DMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQ 587
Query: 284 TVRDFTQVFDAYAQFEELSLNK 305
V+ V+ ++AQFE LS K
Sbjct: 588 HVK----VWISFAQFE-LSSRK 604
Score = 129 (50.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 63/299 (21%), Positives = 130/299 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
YE + + ++ WL+Y E + KN I++R++ LP + WY Y + +++
Sbjct: 145 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYM--EEM 202
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
G + FER + + + + W Y F + ++ + R +++R + P
Sbjct: 203 LGNIA------GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPD 255
Query: 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERLDE-AAV 194
++ W Y F + H A +V+ R ++ F ++ D Y+ + E E V
Sbjct: 256 VKN---WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV 312
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG-- 252
++ Y + +SK + +L+ + D+ R + D I+ +Y +++
Sbjct: 313 RVIYKYALDR-ISK--QEAQELFKNYTIFEKKFGDR-RGIE-DIIVSKRRFQYEEEVKAN 367
Query: 253 -HLWNSLADYY--IRSGL-FERARDIYEEAIQTVTTVRD------FTQVFDAYAQFEEL 301
H +++ DY + S E R++YE AI V +++ + ++ YA +EEL
Sbjct: 368 PHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEEL 426
Score = 123 (48.4 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 36/165 (21%), Positives = 79/165 (47%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIYERSLKELPGSYKLWYNYLKLRRKQ 77
+E+ I +N + +W++Y + +++ K I +IYER+L + LW Y ++ +
Sbjct: 111 FEDNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERALDVDYRNITLWLKYAEM---E 166
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
+K + + N ++R++ + ++ + W Y I R VF+R + P
Sbjct: 167 MKNRQVNH-----ARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQP 221
Query: 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
Q W Y++F + + A ++ R++ + P D +++I+Y
Sbjct: 222 EEQ---AWHSYINFELRYKEVDRARTIYERFVLVHP-DVKNWIKY 262
Score = 121 (47.7 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
Identities = 50/220 (22%), Positives = 99/220 (45%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
+ER+L ++ +WL Y M ++ R+++DRA+ LP + ++ W Y +
Sbjct: 145 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEM 202
Query: 155 HAVPETAVRVFRRYLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKS 212
A +VF R+++ PE+ YI + + +D A + Y E FV H
Sbjct: 203 LGNIAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRA--RTIY----ERFVLVHPDV 256
Query: 213 NHQLWNELCEMISQNPDKIRSLNV-DAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERA 271
+ W + ++ + V + + + D+ HL+ + A + FER
Sbjct: 257 KN--WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDE--HLYVAFAKFEENQKEFERV 312
Query: 272 RDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR-MEEI 310
R IY+ A+ ++ ++ ++F Y FE+ ++R +E+I
Sbjct: 313 RVIYKYALDRISK-QEAQELFKNYTIFEKKFGDRRGIEDI 351
Score = 117 (46.2 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 63/300 (21%), Positives = 128/300 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPK-AIINTIYERSLKELPGSYKLWYNYL--KLRRK 76
++ I P + W +Y ++ A ++ER ++ P + W++Y+ +LR K
Sbjct: 179 WDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEE-QAWHSYINFELRYK 237
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136
+V + +ER V +H + W+ Y RF R V++RA+
Sbjct: 238 EV----------DRARTIYER-FVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFF 286
Query: 137 PITQHHRVWPLYLSFVKSHAVPET--AVRVFRRYL--KLFPEDAEDYIEYLSSIERL--D 190
H LY++F K + VRV +Y ++ ++A++ + + E+ D
Sbjct: 287 G--DEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGD 344
Query: 191 EAAVKLAYIVNKESFVS----KHGKSNHQLWNELCEMISQNPDK--IRSLNVDAIIRGGL 244
++ IV+K F K N+ W + ++ + + +R + AI
Sbjct: 345 RRGIE-DIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPP 403
Query: 245 ---RRYTDQLGHLWNSLADYY-IRSGLFERARDIYEEAIQTVTTVR-DFTQVFDAYAQFE 299
+R+ + +LW + A Y + + ER R +Y+ +++ + + F +++ YAQFE
Sbjct: 404 IQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFE 463
Score = 111 (44.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 57/229 (24%), Positives = 95/229 (41%)
Query: 478 YKSIKLWSLYADLEESFGTFKAYEKGI---ALFKWPYIFDIWN--TYLTKFLSRYGGTKL 532
Y++I LW YA++E + + I A+ P + W TY+ + L G
Sbjct: 153 YRNITLWLKYAEMEMKNRQVN-HARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAG--- 208
Query: 533 ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFN 592
AR +FE+ +E P AR +YER V P+ + N
Sbjct: 209 --ARQVFERWMEWQPEEQAWHSYINFELRYKEVDRAR---TIYERFV-LVHPD----VKN 258
Query: 593 IYIKKAA--EIYG-IPKTRQIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIYA 648
+IK A E +G R++YERA+E +E + + + FA+ E E +R R IY
Sbjct: 259 -WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYK 317
Query: 649 HCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + + + FE G+ + +++ KR + QY +V
Sbjct: 318 YALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKR--RFQYEEEV 364
Score = 95 (38.5 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 54/242 (22%), Positives = 92/242 (38%)
Query: 466 YHDEAETVQARVYKSIKLWSLYADLE--ESFGTFKAYEKGIALFKWPYIFDIWNTYLTKF 523
Y E + + + K+W LYA E + F G ++ K P ++ Y+
Sbjct: 438 YQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELE 496
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
L + +R R L+E+ LE P G A A+YE A
Sbjct: 497 LQL---REFDRCRKLYEKFLEFGPENCTSWIKFAELETIL--GDIERARAIYELAISQPR 551
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET---KLGEI 640
+ ++ YI E +TR +Y R ++ ++ + FA+ E K G +
Sbjct: 552 LDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHV---KVWISFAQFELSSRKEGSL 608
Query: 641 DRARAIYAHCSQI---CDPRVTA-GFWAAWKSFEITHGN-------EDTMREMLRIKRSV 689
+ R IY ++ C+ + +W+SFE G + M E ++ +R V
Sbjct: 609 AKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRRKV 668
Query: 690 QA 691
QA
Sbjct: 669 QA 670
Score = 84 (34.6 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 350 NPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDP---KLAVGKLHTLWIEFGKFYEV 404
NPHN W +RL D + + Y A+ V P K + LW+ + + E+
Sbjct: 367 NPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEEL 426
Query: 405 NDQ-LEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
+ E R ++ + L+P+ K A +W +A+ E+R
Sbjct: 427 EAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQFEIR 465
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445
WI++ ++ E +++ AR I+++A V Y + T+W ++AE+E++ Q
Sbjct: 125 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQ 171
Score = 73 (30.8 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 40/210 (19%), Positives = 84/210 (40%)
Query: 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153
TFE ++ + W+ Y ++ +I + R +++RAL ++ +W Y
Sbjct: 110 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV--DYRNITLWLKYAEMEM 167
Query: 154 SHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDE-AAVKLAYIVNKESFVSKHGKS 212
+ A ++ R + P + + +Y E L A + + E ++ +
Sbjct: 168 KNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVF----ERWME--WQP 221
Query: 213 NHQLWNELC--EMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFER 270
Q W+ E+ + D+ R++ ++ + D W A + + G F
Sbjct: 222 EEQAWHSYINFELRYKEVDRARTIYERFVLV-----HPDVKN--WIKYARFEEKHGYFAH 274
Query: 271 ARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
AR +YE A++ ++ A+A+FEE
Sbjct: 275 ARKVYERAVEFFGDEHMDEHLYVAFAKFEE 304
Score = 65 (27.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 362 RLFDGK-PLDI-IRTYTEAVKTVDPKLAVGKLH-TLWIEFGKFYEVNDQLEDARLIFDKA 418
+LF G L++ +R + K + L G + T WI+F + + +E AR I++ A
Sbjct: 487 KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELA 546
Query: 419 TLVPYTKVEDLATVWCEWAELELRAGQEE 447
P + ++ +W + + E+ QEE
Sbjct: 547 ISQPRLDMPEV--LWKSYIDFEIE--QEE 571
Score = 41 (19.5 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 25/99 (25%), Positives = 43/99 (43%)
Query: 351 PHNVLEWHKRVRLFDGKPLDIIRT---YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407
P N W K L + DI R Y A+ P+L + ++ LW + F ++
Sbjct: 517 PENCTSWIKFAEL-ETILGDIERARAIYELAIS--QPRLDMPEV--LWKSYIDFEIEQEE 571
Query: 408 LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446
E R ++ + L+ T+ VW +A+ EL + +E
Sbjct: 572 TERTRNLYRR--LLQRTQH---VKVWISFAQFELSSRKE 605
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 160 (61.4 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 87/349 (24%), Positives = 142/349 (40%)
Query: 352 HNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGK-LHTLWIEFGKFYEVNDQLED 410
H + + R F+ K ++ R + + + KLA + L++ F +F E ++E
Sbjct: 223 HPKVSAYIRYAKFEMKGGEVARCRSVYERATE-KLADDEEAEILFVAFAEFEERCKEVER 281
Query: 411 ARLIFDKAT-LVPYTKVEDLATVWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDE 469
AR I+ A +P + EDL + ++ E + G +E Y DE
Sbjct: 282 ARFIYKFALDHIPKGRAEDL---YRKFVAFEKQYGDKEGIEDAIVGKRRFQ-----YEDE 333
Query: 470 AETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFK-------WP-YIFDIWN 517
+ Y S W Y LEES G + YE+ IA W YI+ +W
Sbjct: 334 VRKSPSN-YDS---WFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIY-LWI 388
Query: 518 TYLTKFLSRYGGTKLERARDLFEQCLEACP-PRXXXXXXXXXXXXXXXHGL-ARHAMAVY 575
Y +ER RD++ +CL+ P + L A +
Sbjct: 389 NYA--LFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQIL 446
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET 635
A G P++ ++F YI+ ++ + + R++YER +E PE K+AE+E
Sbjct: 447 GNAIGKA-PKD--KIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWS--KYAELER 501
Query: 636 KLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDTMREM 682
L E +RARAI+ I P + W A+ FEI+ G + R +
Sbjct: 502 SLVETERARAIFELA--ISQPALDMPELLWKAYIDFEISEGELERTRAL 548
Score = 125 (49.1 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 61/276 (22%), Positives = 120/276 (43%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQV-KGKV--ITDPSYEDVNNTFERSLVFMHKMPRIW 109
YE +++ P +Y W++Y++L K ++ I + + +V E+ + + +W
Sbjct: 330 YEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKR--YWQRYIYLW 387
Query: 110 LDYGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSFVKSHAVPETAVRVFR 166
++Y F ++ I +TR V+ L+ +P ++ ++W L F A ++
Sbjct: 388 INYALFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILG 447
Query: 167 RYLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMI 224
+ P+D + YIE + +D KL Y E ++ + N W++ E+
Sbjct: 448 NAIGKAPKDKIFKKYIEIELQLGNMDRCR-KL-Y----ERYL-EWSPENCYAWSKYAELE 500
Query: 225 SQ--NPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282
++ R++ AI + L D LW + D+ I G ER R +YE +
Sbjct: 501 RSLVETERARAIFELAISQPAL----DMPELLWKAYIDFEISEGELERTRALYERLLDRT 556
Query: 283 TTVRDFTQVFDAYAQFE----ELSLNKRMEEIAEND 314
+ V+ ++A+FE EL ++ +E E D
Sbjct: 557 KHYK----VWVSFAKFEASAAELEEDENEDEDQEED 588
Score = 124 (48.7 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 50/225 (22%), Positives = 94/225 (41%)
Query: 478 YKSIKLWSLYADLE--ESF--GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLE 533
Y++ LW YA+ E F +++ + L P + +W Y+ + G +
Sbjct: 123 YRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLL--PRVDQLWYKYI--HMEEILGN-IA 177
Query: 534 RARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFNI 593
AR +FE+ ++ P + + A +YER VL +
Sbjct: 178 GARQIFERWMDWSPDQQGWLSFIKFELR---YNEIERARTIYERF---VLCHPKVSAYIR 231
Query: 594 YIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMC-LKFAEMETKLGEIDRARAIYAHCSQ 652
Y K + + + R +YERA E L ++ ++ + FAE E + E++RAR IY
Sbjct: 232 YAKFEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFALD 291
Query: 653 ICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + +FE +G+++ + + + KR + QY +V
Sbjct: 292 HIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKR--RFQYEDEV 334
Score = 121 (47.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 38/176 (21%), Positives = 77/176 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAP-KAIINTIYERSLKELPGSY--KLWYNYLKLRRK 76
YE+E+ ++P + W Y+ +++ K I IYER++ +P + + W Y+ L
Sbjct: 330 YEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWIN 389
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFDRA 132
+ I E + + L + H +IWL +F + Q +T R + A
Sbjct: 390 YALFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNA 449
Query: 133 LRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIER 188
+ P +++ Y+ + +++ RYL+ PE+ + +Y + +ER
Sbjct: 450 IGKAP---KDKIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWSKY-AELER 501
Score = 118 (46.6 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 69/289 (23%), Positives = 125/289 (43%)
Query: 34 WLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92
WL+Y E + KN +++R++ LP +LWY Y+ + +++ G +
Sbjct: 129 WLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHM--EEILGNIA------GAR 180
Query: 93 NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP-ITQHHRVWPLYLSF 151
FER + + WL + +F + ++I + R +++R + P ++ + R Y F
Sbjct: 181 QIFERWMDWSPDQQG-WLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIR----YAKF 235
Query: 152 VKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA-VKLAYIVNKESFVSKH- 209
V+ R + +D E I +++ E + V+ A + K F H
Sbjct: 236 EMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYK--FALDHI 293
Query: 210 --GKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRR--YTDQLGHL---WNSLADYY 262
G++ L+ + Q DK + DAI+ G RR Y D++ ++S DY
Sbjct: 294 PKGRAE-DLYRKFVAFEKQYGDK-EGIE-DAIV--GKRRFQYEDEVRKSPSNYDSWFDY- 347
Query: 263 IRS----GLFERARDIYEEAIQTVTTVRD------FTQVFDAYAQFEEL 301
+R G +R R+IYE AI V + + ++ YA FEE+
Sbjct: 348 VRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEI 396
Score = 113 (44.8 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 52/248 (20%), Positives = 105/248 (42%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDY 112
+E ++ + ++W Y + Q Y + +ER++ ++ +WL Y
Sbjct: 81 FEDQIRRARWNIQVWVKYAQWEESQ--------KDYARARSVWERAIEGDYRNHTLWLKY 132
Query: 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172
F M + R+V+DRA+ LP ++W Y+ + A ++F R++
Sbjct: 133 AEFEMKNKFVNSARNVWDRAVTLLPRVD--QLWYKYIHMEEILGNIAGARQIFERWMDWS 190
Query: 173 PEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIR 232
P D + ++ ++ R +E ++ A + E FV H K + + EM + R
Sbjct: 191 P-DQQGWLSFIKFELRYNE--IERARTIY-ERFVLCHPKVSAYIRYAKFEMKGGEVARCR 246
Query: 233 SLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVF 292
S+ A + ++ L+ + A++ R ERAR IY+ A+ + R ++
Sbjct: 247 SVYERATEK---LADDEEAEILFVAFAEFEERCKEVERARFIYKFALDHIPKGRA-EDLY 302
Query: 293 DAYAQFEE 300
+ FE+
Sbjct: 303 RKFVAFEK 310
Score = 112 (44.5 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 32/164 (19%), Positives = 77/164 (46%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPK-AIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
+E++I R ++++ W++Y + +++ A +++ER+++ ++ LW Y + ++
Sbjct: 81 FEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEF---EM 137
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
K K + N ++R++ + ++ ++W Y I R +F+R + P
Sbjct: 138 KNKFVNS-----ARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQIFERWMDWSPD 192
Query: 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
Q W ++ F + E A ++ R++ P+ YI Y
Sbjct: 193 QQG---WLSFIKFELRYNEIERARTIYERFVLCHPK-VSAYIRY 232
Score = 65 (27.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK-FAEMETKLGEIDR 642
PE + ++ Y + + + R I+E AI S P ++ K + + E GE++R
Sbjct: 487 PENCYA-WSKYAELERSLVETERARAIFELAI-SQPALDMPELLWKAYIDFEISEGELER 544
Query: 643 ARAIYAHCSQICDPRVTAGFWAAWKSFE 670
RA+Y ++ D W ++ FE
Sbjct: 545 TRALY---ERLLDRTKHYKVWVSFAKFE 569
Score = 58 (25.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 37/178 (20%), Positives = 67/178 (37%)
Query: 466 YHDEAETVQARVYKSIKLWSLYADLE-ESFGTFKAYE-KGIALFKWPYIFDIWNTYLTKF 523
Y + + + + K+W L A E A + G A+ K P I+ Y+
Sbjct: 408 YRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKD-KIFKKYIEIE 466
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
L + G ++R R L+E+ LE P A A++E A
Sbjct: 467 L-QLGN--MDRCRKLYERYLEWSPENCYAWSKYAELERSLVE--TERARAIFELAISQPA 521
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEID 641
+ ++ YI + +TR +YER ++ ++ + FA+ E E++
Sbjct: 522 LDMPELLWKAYIDFEISEGELERTRALYERLLDRTKHY---KVWVSFAKFEASAAELE 576
Score = 54 (24.1 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR 442
+W+++ ++ E AR ++++A Y T+W ++AE E++
Sbjct: 94 VWVKYAQWEESQKDYARARSVWERAIEGDYRN----HTLWLKYAEFEMK 138
Score = 45 (20.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 406 DQLEDARLIFDKATL-----VPYTKVEDLATVWCEWAELELRAG 444
D ++ AR IFD+A P K E+ AT+ +W +E G
Sbjct: 595 DCIKRARAIFDRANTYYKDSTPELK-EERATLLEDWLNMESSFG 637
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 139 (54.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 46/177 (25%), Positives = 78/177 (44%)
Query: 511 YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXX-----XXXXXXXXXH 565
YI+ +W Y +RAR +++ C++ P +
Sbjct: 382 YIY-LWINYA--LYEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDL 438
Query: 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ 625
AR M V A G P++ ++F YI ++ + R++YE+ +ES PE + Q
Sbjct: 439 NAARKIMGV---AIGKC-PKD--KLFRAYIDLELQLREFDRCRKLYEKFLESSPE--SSQ 490
Query: 626 MCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREM 682
+KFAE+ET LG+ DR+RA++ Q + W A+ FEI + R++
Sbjct: 491 TWIKFAELETLLGDTDRSRAVFTIAVQQPALDMPELLWKAYIDFEIACEEHEKARDL 547
Score = 131 (51.2 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 38/172 (22%), Positives = 80/172 (46%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI-INTIYERSLKELPGSYKLWYNY--LKLRRK 76
+E+ I +N + +W++Y + +++ + +++ER+L S +W Y +++R K
Sbjct: 75 FEDGIRKNRMQLANWIKYGKWEESIGEIQRARSVFERALDVDHRSISIWLQYAEMEMRCK 134
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136
Q+ N F+R++ M + + WL Y I R +F+R +
Sbjct: 135 QIN----------HARNVFDRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWE 184
Query: 137 PITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIER 188
P Q W Y++F + + A V++R+L + + +++I+Y ER
Sbjct: 185 PPEQ---AWQTYINFELRYKEIDRARSVYQRFLHVHGINVQNWIKYAKFEER 233
Score = 123 (48.4 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 55/214 (25%), Positives = 98/214 (45%)
Query: 93 NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFV 152
+ FER+L H+ IWL Y M +I R+VFDRA+ +P + W Y S++
Sbjct: 107 SVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAM--QFWLKY-SYM 163
Query: 153 KS--HAVPETAVRVFRRYLKLFP-EDA-EDYIEYLSSIERLDEAAVKLAYIVNKESFVSK 208
+ +P A ++F R+++ P E A + YI + + +D A + Y + F+
Sbjct: 164 EEVIENIPG-ARQIFERWIEWEPPEQAWQTYINFELRYKEIDRA--RSVY----QRFLHV 216
Query: 209 HGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ-LGH-LWNSLADYYIRSG 266
HG N Q W + + +N I N A + + ++ + + + A + R
Sbjct: 217 HG-INVQNWIKYAKFEERN-GYIG--NARAAYEKAMEYFGEEDINETVLVAFALFEERQK 272
Query: 267 LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
ERAR I++ + + + R ++F Y Q E+
Sbjct: 273 EHERARGIFKYGLDNLPSNRT-EEIFKHYTQHEK 305
Score = 118 (46.6 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 55/262 (20%), Positives = 112/262 (42%)
Query: 51 TIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDV--N---NTFERSLVFMHKM 105
T YE+ ++E +Y W++YL+L + + + YE N +++ + + +
Sbjct: 323 TQYEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVYERAIANIPPHSYFQEKRYWRRY 382
Query: 106 PRIWLDYGRFL-MDQHKITQTRHVFDRALRALP--ITQHHRVWPLYLSFVKSHAVPETAV 162
+W++Y + + + R V+ + +P +VW ++ F A
Sbjct: 383 IYLWINYALYEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAAR 442
Query: 163 RVFRRYLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNEL 220
++ + P+D YI+ + D KL Y E F+ +S+ Q W +
Sbjct: 443 KIMGVAIGKCPKDKLFRAYIDLELQLREFDRCR-KL-Y----EKFLESSPESS-QTWIKF 495
Query: 221 CEM--ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEA 278
E+ + + D+ R++ A+ + L D LW + D+ I E+ARD+YE
Sbjct: 496 AELETLLGDTDRSRAVFTIAVQQPAL----DMPELLWKAYIDFEIACEEHEKARDLYETL 551
Query: 279 IQTVTTVRDFTQVFDAYAQFEE 300
+Q ++ V+ + A+FE+
Sbjct: 552 LQRTNHIK----VWISMAEFEQ 569
Score = 113 (44.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 52/280 (18%), Positives = 118/280 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKN--APKAIINTIYERSLKELPG-SY----KLWYNYLK 72
YE+ + N ++ W Y+ +N + + +YER++ +P SY + W Y+
Sbjct: 325 YEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVYERAIANIPPHSYFQEKRYWRRYIY 384
Query: 73 LRRKQVKGKVITDPSYEDVNNTFERSL-VFMHK---MPRIWLDYGRFLMDQHKITQTRHV 128
L + + ++ ++ + + HK ++W+ + F + Q + R +
Sbjct: 385 LWINYALYEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAARKI 444
Query: 129 FDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIER 188
A+ P +++ Y+ + +++ ++L+ PE ++ +I++ + +E
Sbjct: 445 MGVAIGKCP---KDKLFRAYIDLELQLREFDRCRKLYEKFLESSPESSQTWIKF-AELET 500
Query: 189 L----DEAAVKLAYIVNKESFVSKHGKSNHQLWNELC--EMISQNPDKIRSLNVDAIIRG 242
L D + V + + LW E+ + +K R L + +
Sbjct: 501 LLGDTDRSRAVFTIAVQQPAL-----DMPELLWKAYIDFEIACEEHEKARDL-YETL--- 551
Query: 243 GLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282
L+R T+ + +W S+A++ G FE AR +E A Q++
Sbjct: 552 -LQR-TNHI-KVWISMAEFEQTIGNFEGARKAFERANQSL 588
Score = 96 (38.9 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 66/307 (21%), Positives = 117/307 (38%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL-ATVWCEWAELELRAGQEEXXXXXX 453
WI++ KF E N + +AR ++KA + Y ED+ TV +A E R + E
Sbjct: 224 WIKYAKFEERNGYIGNARAAYEKA--MEYFGEEDINETVLVAFALFEERQKEHERARGIF 281
Query: 454 XXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFGTFKA--YEKGIALFKWPY 511
+ E + + K + +E+ + + YEK + + Y
Sbjct: 282 KYGLDNLPS-----NRTEEIFKHYTQHEKKFGERVGIEDVIISKRKTQYEKMVE--ENGY 334
Query: 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXX---HGLA 568
+D W YL L T E D++E+ + PP + L
Sbjct: 335 NYDAWFDYLR--LLENEETDREEVEDVYERAIANIPPHSYFQEKRYWRRYIYLWINYALY 392
Query: 569 RHAMAV-YERATGA------VLPEEMFEMFNIYIKKAA-EI--YGIPKTRQIYERAIESL 618
+A ++RA ++P + F ++I A EI + R+I AI
Sbjct: 393 EELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAARKIMGVAIGKC 452
Query: 619 PEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDT 678
P++ ++ + ++E +L E DR R +Y + P ++ W + E G+ D
Sbjct: 453 PKD---KLFRAYIDLELQLREFDRCRKLYEKFLE-SSPE-SSQTWIKFAELETLLGDTDR 507
Query: 679 MREMLRI 685
R + I
Sbjct: 508 SRAVFTI 514
Score = 94 (38.1 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 51/225 (22%), Positives = 95/225 (42%)
Query: 468 DEAETVQARVYKSIKLWSLYADLEESF----GTFKAYEKGIALFKWPYIFDIWNTYLTKF 523
D A T+ R +++ W Y+ +EE G + +E+ I +W W TY+ F
Sbjct: 144 DRAITIMPR---AMQFWLKYSYMEEVIENIPGARQIFERWI---EWEPPEQAWQTYIN-F 196
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
RY +++RAR ++++ L +G +A A YE+A
Sbjct: 197 ELRY--KEIDRARSVYQRFLHV--HGINVQNWIKYAKFEERNGYIGNARAAYEKAMEYFG 252
Query: 584 PEEMFEM----FNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGE 639
E++ E F ++ ++ E + R I++ +++LP T ++ + + E K GE
Sbjct: 253 EEDINETVLVAFALFEERQKEH---ERARGIFKYGLDNLPSNRTEEIFKHYTQHEKKFGE 309
Query: 640 -IDRARAIYAHCSQICDPRVTA-GF-WAAWKSFEITHGNEDTMRE 681
+ I + + V G+ + AW + NE+T RE
Sbjct: 310 RVGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDRE 354
Score = 89 (36.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 53/223 (23%), Positives = 86/223 (38%)
Query: 478 YKSIKLWSLYADLEESFGTFK----AYEKGIALFKWPYIFDIW--NTYLTKFLSRYGGTK 531
++SI +W YA++E +++ I + P W +Y+ + + G
Sbjct: 117 HRSISIWLQYAEMEMRCKQINHARNVFDRAITIM--PRAMQFWLKYSYMEEVIENIPG-- 172
Query: 532 LERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMF 591
AR +FE+ +E PP AR +VY+R L +
Sbjct: 173 ---ARQIFERWIEWEPPEQAWQTYINFELRYKEIDRAR---SVYQR----FLHVHGINVQ 222
Query: 592 NIYIK--KAAEIYG-IPKTRQIYERAIESLPEEPTRQMCL-KFAEMETKLGEIDRARAIY 647
N +IK K E G I R YE+A+E EE + L FA E + E +RAR I+
Sbjct: 223 N-WIKYAKFEERNGYIGNARAAYEKAMEYFGEEDINETVLVAFALFEERQKEHERARGIF 281
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690
+ T + + E G + +++ KR Q
Sbjct: 282 KYGLDNLPSNRTEEIFKHYTQHEKKFGERVGIEDVIISKRKTQ 324
Score = 87 (35.7 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445
WI++GK+ E +++ AR +F++A V + + ++W ++AE+E+R Q
Sbjct: 89 WIKYGKWEESIGEIQRARSVFERALDVDHRSI----SIWLQYAEMEMRCKQ 135
Score = 86 (35.3 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 49/235 (20%), Positives = 94/235 (40%)
Query: 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEK--GIALFKWPYIFDIWNTYLTKFLSRYG 528
+ + + + K+W ++A E A K G+A+ K P ++ Y+ L
Sbjct: 412 DIIPHKTFTFAKVWIMFAHFEIRQLDLNAARKIMGVAIGKCPKD-KLFRAYIDLELQL-- 468
Query: 529 GTKLERARDLFEQCLEACPPRXXX---XXXXXXXXXXXXHGLARHAMAVYERATGAVLPE 585
+ +R R L+E+ LE+ P A +AV + A +PE
Sbjct: 469 -REFDRCRKLYEKFLESSPESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALD--MPE 525
Query: 586 EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARA 645
+++ + I + A E + K R +YE ++ ++ + AE E +G + AR
Sbjct: 526 LLWKAY-IDFEIACEEH--EKARDLYETLLQRTNHI---KVWISMAEFEQTIGNFEGARK 579
Query: 646 IYAHCSQI---CDPRVTAGFWAAWKSFEITHGNEDTMRE---ML--RIKRSVQAQ 692
+ +Q + AWK E G+++ ++ M+ R+K+ Q Q
Sbjct: 580 AFERANQSLENAEKEERLMLLEAWKECETKSGDQEALKRVETMMPRRVKKRRQIQ 634
Score = 81 (33.6 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 48/198 (24%), Positives = 79/198 (39%)
Query: 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHR---VWPLYLSFVKSHAVPETAVRVF 165
W+ YG++ +I + R VF+RAL HR +W Y A VF
Sbjct: 89 WIKYGKWEESIGEIQRARSVFERALDV-----DHRSISIWLQYAEMEMRCKQINHARNVF 143
Query: 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELC--EM 223
R + + P + +++Y S +E + E I E ++ + Q W E+
Sbjct: 144 DRAITIMPRAMQFWLKY-SYMEEVIENIPGARQIF--ERWIE--WEPPEQAWQTYINFEL 198
Query: 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283
+ D+ RS+ + G+ W A + R+G AR YE+A++
Sbjct: 199 RYKEIDRARSVYQRFLHVHGINVQN------WIKYAKFEERNGYIGNARAAYEKAMEYFG 252
Query: 284 TVRDFTQ-VFDAYAQFEE 300
D + V A+A FEE
Sbjct: 253 E-EDINETVLVAFALFEE 269
Score = 61 (26.5 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKA--TLVPYTKVEDLATVWCEWAELELRAGQEE 447
+WI +F + E AR F++A +L K E L + W E E ++G +E
Sbjct: 560 VWISMAEFEQTIGNFEGARKAFERANQSLENAEKEERLMLLEA-WKECETKSGDQE 614
Score = 50 (22.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 393 TLWIEFGKFYEVNDQLEDARLIFDKA-TLVP 422
++W+++ + Q+ AR +FD+A T++P
Sbjct: 121 SIWLQYAEMEMRCKQINHARNVFDRAITIMP 151
Score = 50 (22.7 bits), Expect = 9.1e-06, Sum P(4) = 9.1e-06
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 468 DEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK 502
D ET+ R IK+W A+ E++ G F+ K
Sbjct: 546 DLYETLLQRT-NHIKVWISMAEFEQTIGNFEGARK 579
Score = 46 (21.3 bits), Expect = 9.1e-06, Sum P(4) = 9.1e-06
Identities = 11/53 (20%), Positives = 24/53 (45%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEE 447
WI+F + + + +R +F A P + +L +W + + E+ + E
Sbjct: 492 WIKFAELETLLGDTDRSRAVFTIAVQQPALDMPEL--LWKAYIDFEIACEEHE 542
Score = 45 (20.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR 442
W+++ EV + + AR IF++ + + E W + ELR
Sbjct: 157 WLKYSYMEEVIENIPGARQIFER-----WIEWEPPEQAWQTYINFELR 199
Score = 41 (19.5 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 35/155 (22%), Positives = 59/155 (38%)
Query: 168 YLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSK-HGKSNHQLWNELC---EM 223
YL+L + D E +E + E A+ A I F K + + LW E+
Sbjct: 342 YLRLLENEETDREE----VEDVYERAI--ANIPPHSYFQEKRYWRRYIYLWINYALYEEL 395
Query: 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283
++++ D+ R + I + +T +W A + IR AR I AI
Sbjct: 396 VAKDFDRARQVYKACIDIIPHKTFT--FAKVWIMFAHFEIRQLDLNAARKIMGVAIGKCP 453
Query: 284 TVRDFTQVFDAYAQFEELSLNKRM-EEIAENDTPS 317
+ F D Q E +++ E+ E+ S
Sbjct: 454 KDKLFRAYIDLELQLREFDRCRKLYEKFLESSPES 488
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 136 (52.9 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 50/196 (25%), Positives = 82/196 (41%)
Query: 511 YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARH 570
YI+ +W Y ER R +++ CLE P +
Sbjct: 367 YIY-LWINYA--LYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKEL 423
Query: 571 AMAVYERATGAVL---PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMC 627
A +A G + P + ++F YI ++ + R +YE+ +E PE M
Sbjct: 424 QRA--RKALGLAIGMCPRD--KLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWM- 478
Query: 628 LKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDTMREMLRI 685
KFAE+E LG+ DRARAI+ Q PR+ W A+ FE+ G + R++
Sbjct: 479 -KFAELENLLGDTDRARAIFELAVQ--QPRLDMPELLWKAYIDFEVALGETELARQLY-- 533
Query: 686 KRSVQAQYNTQVLFTF 701
+R ++ + +V +F
Sbjct: 534 ERLLERTQHVKVWMSF 549
Score = 133 (51.9 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 34/164 (20%), Positives = 77/164 (46%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI-INTIYERSLKELPGSYKLWYNYLKLRRKQV 78
+E+ + +N V HW++Y + ++ + +I+ER+L + LW Y ++ ++
Sbjct: 65 FEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEM---EM 121
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
K K + N ++R++ M ++ + W Y + R VF+R + P
Sbjct: 122 KNKQVNH-----ARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPE 176
Query: 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
Q W Y++F + + A ++ R++ + P D +++I++
Sbjct: 177 EQ---AWQTYVNFELRYKEIDRAREIYERFVYVHP-DVKNWIKF 216
Score = 129 (50.5 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 53/255 (20%), Positives = 108/255 (42%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV-FMHKMPRIWLD 111
YE+ + P +Y W++YL+L + I + ++N + F + +W++
Sbjct: 314 YEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIYLWIN 373
Query: 112 YGRFL-MDQHKITQTRHVFDRALRALPITQH--HRVWPLYLSFVKSHAVPETAVRVFRRY 168
Y + ++ +TR ++ L +P Q ++W LY F + A +
Sbjct: 374 YALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLA 433
Query: 169 LKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM--I 224
+ + P D YI+ + + ++ Y E F+ + G N W + E+ +
Sbjct: 434 IGMCPRDKLFRGYIDLEIQLREFERC--RMLY----EKFL-EFGPENCVTWMKFAELENL 486
Query: 225 SQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTT 284
+ D+ R++ A+ + L D LW + D+ + G E AR +YE ++
Sbjct: 487 LGDTDRARAIFELAVQQPRL----DMPELLWKAYIDFEVALGETELARQLYERLLERTQH 542
Query: 285 VRDFTQVFDAYAQFE 299
V+ V+ ++A+FE
Sbjct: 543 VK----VWMSFAKFE 553
Score = 107 (42.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 51/228 (22%), Positives = 96/228 (42%)
Query: 478 YKSIKLWSLYADLE----ESFGTFKAYEKGIALFKWPYIFDIWN--TYLTKFLSRYGGTK 531
++++ LW YA++E + +++ + + P + W TY+ + L G
Sbjct: 107 HRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIM--PRVNQFWYKYTYMEEMLENVAG-- 162
Query: 532 LERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPE-EMFEM 590
AR +FE+ +E P AR +YER V P+ + +
Sbjct: 163 ---ARQVFERWMEWQPEEQAWQTYVNFELRYKEIDRARE---IYERFV-YVHPDVKNWIK 215
Query: 591 FNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIYAH 649
F + + I+G +R+++ERA+E ++ + + + FA E E DRAR IY +
Sbjct: 216 FARFEESHGFIHG---SRRVFERAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKY 272
Query: 650 CSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
T + A+ E +G+ + +++ KR Q Y +V
Sbjct: 273 ALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQ--YEQEV 318
Score = 95 (38.5 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 48/210 (22%), Positives = 92/210 (43%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
+ER+L H+ +WL Y M ++ R+++DRA+ +P + ++ W Y +
Sbjct: 99 WERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMP--RVNQFWYKYTYMEEM 156
Query: 155 HAVPETAVRVFRRYLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKS 212
A +VF R+++ PE+ + Y+ + + +D A + Y E FV H
Sbjct: 157 LENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEIDRA--REIY----ERFVYVHPDV 210
Query: 213 NHQLWNELCEMISQNPDKIRSLNV-DAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERA 271
+ W + + S V + + Y ++ L+ + A + +RA
Sbjct: 211 KN--WIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEE--RLFIAFARFEEGQKEHDRA 266
Query: 272 RDIYEEAIQTVTTVRDFTQ-VFDAYAQFEE 300
R IY+ A+ + +D TQ +F AY + E+
Sbjct: 267 RIIYKYALDHLP--KDRTQELFKAYTKHEK 294
Score = 79 (32.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 46/229 (20%), Positives = 84/229 (36%)
Query: 468 DEAETVQAR---VYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYL 520
D A + R V+ +K W +A EES G + +E+ + F YI +
Sbjct: 194 DRAREIYERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFIAF 253
Query: 521 TKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHG--------LARHAM 572
+F G + +RAR +++ L+ P +G +
Sbjct: 254 ARF--EEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRK 311
Query: 573 AVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAE 632
YE+ A P F+ Y++ + R+ YERAI ++P + ++
Sbjct: 312 YQYEQEVAAN-PTNYDAWFD-YLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIY 369
Query: 633 M--------ETKLGEIDRARAIYAHCSQICDPR--VTAGFWAAWKSFEI 671
+ E + + +R R IY C ++ + + W + FEI
Sbjct: 370 LWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEI 418
Score = 78 (32.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/126 (23%), Positives = 52/126 (41%)
Query: 36 RYIEHKKNAPKAIINTIYERSLKELPG--SYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93
R+ E +K +A I IY+ +L LP + +L+ Y K +K I D
Sbjct: 255 RFEEGQKEHDRARI--IYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKY 312
Query: 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153
+E+ + W DY R + + Q R ++RA+ +P W Y+
Sbjct: 313 QYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIYLWI 372
Query: 154 SHAVPE 159
++A+ E
Sbjct: 373 NYALYE 378
Score = 73 (30.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 46/227 (20%), Positives = 88/227 (38%)
Query: 83 ITDPS----YED-VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
I+DP+ Y+ TFE +L + W+ Y ++ Q +I + R +++RAL
Sbjct: 48 ISDPAELADYQQRKRKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALD--- 104
Query: 138 ITQHHRV--WPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVK 195
+H V W Y + A ++ R + + P + + +Y E L+ A
Sbjct: 105 -NEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGA 163
Query: 196 LAYIVNKESFVSKHGKSNHQLWNELC--EMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
E ++ + Q W E+ + D+ R + + + Y
Sbjct: 164 RQVF---ERWME--WQPEEQAWQTYVNFELRYKEIDRAREI-YERFV------YVHPDVK 211
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
W A + G +R ++E A++ ++F A+A+FEE
Sbjct: 212 NWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEE 258
Score = 68 (29.0 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 17/67 (25%), Positives = 37/67 (55%)
Query: 380 KTVDPKLAVGKLHTL-WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAE 438
KT + L ++ WI++ ++ E +++ AR I+++A + V T+W ++AE
Sbjct: 63 KTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNV----TLWLKYAE 118
Query: 439 LELRAGQ 445
+E++ Q
Sbjct: 119 MEMKNKQ 125
Score = 60 (26.2 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 22/91 (24%), Positives = 42/91 (46%)
Query: 360 RVRLFDGK-PLDI-IRTYTEAVKTVDPKLAVGKLHTL-WIEFGKFYEVNDQLEDARLIFD 416
R +LF G L+I +R + + L G + + W++F + + + AR IF+
Sbjct: 439 RDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFE 498
Query: 417 KATLVPYTKVEDLATVWCEWAELELRAGQEE 447
A P + +L +W + + E+ G+ E
Sbjct: 499 LAVQQPRLDMPEL--LWKAYIDFEVALGETE 527
Score = 47 (21.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 19/95 (20%), Positives = 39/95 (41%)
Query: 350 NPH-NVLEWHKRVRL-FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407
N H NV W K + K ++ R + T+ P++ + W ++ E+ +
Sbjct: 105 NEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRV-----NQFWYKYTYMEEMLEN 159
Query: 408 LEDARLIFDKATLVPYTKVEDLATVWCEWAELELR 442
+ AR +F++ + + + W + ELR
Sbjct: 160 VAGARQVFER-----WMEWQPEEQAWQTYVNFELR 189
Score = 40 (19.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 40/151 (26%), Positives = 57/151 (37%)
Query: 482 KLWSLYADLEESFGTFKA----YEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARD 537
KL+ Y DLE F+ YEK + P W + + + G T +RAR
Sbjct: 441 KLFRGYIDLEIQLREFERCRMLYEKFLEF--GPENCVTWMKF-AELENLLGDT--DRARA 495
Query: 538 LFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMA--VYERA---TGAVLPEEMFEMFN 592
+FE ++ PR L +A +YER T V F F
Sbjct: 496 IFELAVQQ--PRLDMPELLWKAYIDFEVALGETELARQLYERLLERTQHVKVWMSFAKFE 553
Query: 593 IYIKKA-----AEIYGIPKTRQIYERAIESL 618
+ + AE+ + R+IYERA E L
Sbjct: 554 MGLSHGDSGPDAEL-NVQLARRIYERANEML 583
Score = 38 (18.4 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 575 YERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP 622
+E + PE+ N+ + AA+++ K + + ++ EP
Sbjct: 639 WEEVFDYIFPEDEMARPNLKLLAAAKMWKTQKDNTVDDPPATAIASEP 686
Score = 37 (18.1 bits), Expect = 0.00092, Sum P(3) = 0.00092
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 469 EAETVQARVYKSIKLWSLYADLEESFG 495
E Q R+ LW Y D E + G
Sbjct: 498 ELAVQQPRLDMPELLWKAYIDFEVALG 524
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 150 (57.9 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 80/323 (24%), Positives = 132/323 (40%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXX 453
L++ F KF E + E R+I+ K L +K ++ ++ + E + G
Sbjct: 342 LYVAFAKFEENQKEFERVRVIY-KYALDRISK-QEAQELFKNYTIFEKKFGDRRGIEDII 399
Query: 454 XXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG---TFK-AYEKGIALFK- 508
Y +E V+A + + W Y L ES T + YE+ IA
Sbjct: 400 VSKRRFQ-----YEEE---VKANPH-NYDAWFDYLRLVESDAEAETVREVYERAIANVPP 450
Query: 509 ------WP-YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXX 561
W YI+ +W Y ER R +++ LE P +
Sbjct: 451 VQEKRHWKRYIY-LWINYA--LYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYA 507
Query: 562 XXXHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620
+ + + RA G + + ++F YI+ ++ + R++YE+ +E PE
Sbjct: 508 QFE--IRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE 565
Query: 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDT 678
T +KFAE+ET LG+I+RARAIY I PR+ W ++ FEI E+T
Sbjct: 566 NCTSW--IKFAELETILGDIERARAIYELA--ISQPRLDMPEVLWKSYIDFEIEQ--EET 619
Query: 679 MREMLRIKRSVQAQYNTQVLFTF 701
R +R +Q + +V +F
Sbjct: 620 ERTRNLYRRLLQRTQHVKVWISF 642
Score = 142 (55.0 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 60/296 (20%), Positives = 127/296 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEH-KKNAPKAIINTIYERSLKELPG--SYKLW--YNYLKLR 74
YEEE+ NP + W Y+ + +A + +YER++ +P + W Y YL +
Sbjct: 407 YEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEKRHWKRYIYLWIN 466
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFD 130
+ DP E ++ SL + HK ++WL Y +F + Q + R
Sbjct: 467 YALYEELEAKDP--ERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALG 524
Query: 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLD 190
++ P ++++ Y+ + +++ ++L+ PE+ +I++ + +E +
Sbjct: 525 TSIGKCP---KNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKF-AELETI- 579
Query: 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250
++ A + + + LW + + + R+ N + R L+R T
Sbjct: 580 LGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRN---LYRRLLQR-TQH 635
Query: 251 LGHLWNSLADYYIRSGL---FERARDIYEEAIQTVTTVRDFTQ---VFDAYAQFEE 300
+ +W S A + + SG + R IYEEA +T+ + + + +++ FE+
Sbjct: 636 V-KVWISFAQFELSSGKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRNFED 690
Score = 138 (53.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 63/262 (24%), Positives = 114/262 (43%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE-RSLVFMHKMPRIWLD 111
YE +K P +Y W++YL+L + + + + + N + + +W++
Sbjct: 407 YEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEKRHWKRYIYLWIN 466
Query: 112 YGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSF-VKSHAVPETAVRVFRR 167
Y + ++ +TR V+ +L +P + ++W LY F ++ +P A R
Sbjct: 467 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLP-FARRALGT 525
Query: 168 YLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM-- 223
+ P++ + YIE + D KL Y E F+ + G N W + E+
Sbjct: 526 SIGKCPKNKLFKGYIELELQLREFDRCR-KL-Y----EKFL-EFGPENCTSWIKFAELET 578
Query: 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283
I + ++ R++ AI + L D LW S D+ I ER R++Y +Q
Sbjct: 579 ILGDIERARAIYELAISQPRL----DMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQ 634
Query: 284 TVRDFTQVFDAYAQFEELSLNK 305
V+ V+ ++AQFE LS K
Sbjct: 635 HVK----VWISFAQFE-LSSGK 651
Score = 135 (52.6 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 66/301 (21%), Positives = 132/301 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
YE + + ++ WL+Y E + KN I++R++ LP + WY Y + +++
Sbjct: 188 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYM--EEM 245
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
G + FER + + + + W Y F + ++ + R +++R + +L +
Sbjct: 246 LGNIA------GARQVFERWMEWRPE-EQAWHSYINFELRYKEVDRARTIYERYIHSLVL 298
Query: 139 TQHHRV--WPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERLDE-A 192
H V W Y F + H A +V+ R ++ F ++ D Y+ + E E
Sbjct: 299 V-HPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFE 357
Query: 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252
V++ Y + +SK + +L+ + D+ R + D I+ +Y +++
Sbjct: 358 RVRVIYKYALDR-ISK--QEAQELFKNYTIFEKKFGDR-RGIE-DIIVSKRRFQYEEEVK 412
Query: 253 ---HLWNSLADYY--IRSGL-FERARDIYEEAIQTVTTVRD------FTQVFDAYAQFEE 300
H +++ DY + S E R++YE AI V V++ + ++ YA +EE
Sbjct: 413 ANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEKRHWKRYIYLWINYALYEE 472
Query: 301 L 301
L
Sbjct: 473 L 473
Score = 120 (47.3 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 50/221 (22%), Positives = 99/221 (44%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
+ER+L ++ +WL Y M ++ R+++DRA+ LP + ++ W Y +
Sbjct: 188 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEM 245
Query: 155 HAVPETAVRVFRRYLKLFPEDA--EDYIEYLSSIERLDEA-AVKLAYIVNKESFVSKHGK 211
A +VF R+++ PE+ YI + + +D A + YI S V H
Sbjct: 246 LGNIAGARQVFERWMEWRPEEQAWHSYINFELRYKEVDRARTIYERYI---HSLVLVHPD 302
Query: 212 SNHQLWNELCEMISQNPDKIRSLNV-DAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFER 270
+ W + ++ + V + + + D+ HL+ + A + FER
Sbjct: 303 VKN--WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDE--HLYVAFAKFEENQKEFER 358
Query: 271 ARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR-MEEI 310
R IY+ A+ ++ ++ ++F Y FE+ ++R +E+I
Sbjct: 359 VRVIYKYALDRISK-QEAQELFKNYTIFEKKFGDRRGIEDI 398
Score = 119 (46.9 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 38/168 (22%), Positives = 78/168 (46%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIYERSLKELPGSYKLWYNYLKLRRKQ 77
+E+ I +N + +W++Y + +++ K I +IYER+L + LW Y ++ +
Sbjct: 154 FEDNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERALDVDYRNITLWLKYAEM---E 209
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
+K + + N ++R++ + ++ + W Y I R VF+R + P
Sbjct: 210 MKNRQVNH-----ARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWRP 264
Query: 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRY---LKLFPEDAEDYIEY 182
Q W Y++F + + A ++ RY L L D +++I+Y
Sbjct: 265 EEQ---AWHSYINFELRYKEVDRARTIYERYIHSLVLVHPDVKNWIKY 309
Score = 112 (44.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 55/229 (24%), Positives = 96/229 (41%)
Query: 478 YKSIKLWSLYADLEESFGTFKAYEKGI---ALFKWPYIFDIWN--TYLTKFLSRYGGTKL 532
Y++I LW YA++E + + I A+ P + W TY+ + L G
Sbjct: 196 YRNITLWLKYAEMEMKNRQVN-HARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAG--- 251
Query: 533 ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFN 592
AR +FE+ +E P AR +YER +++ ++ N
Sbjct: 252 --ARQVFERWMEWRPEEQAWHSYINFELRYKEVDRAR---TIYERYIHSLVLVHP-DVKN 305
Query: 593 IYIKKAA--EIYG-IPKTRQIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIYA 648
+IK A E +G R++YERA+E +E + + + FA+ E E +R R IY
Sbjct: 306 -WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYK 364
Query: 649 HCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + + + FE G+ + +++ KR + QY +V
Sbjct: 365 YALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKR--RFQYEEEV 411
Score = 92 (37.4 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 53/242 (21%), Positives = 92/242 (38%)
Query: 466 YHDEAETVQARVYKSIKLWSLYADLE--ESFGTFKAYEKGIALFKWPYIFDIWNTYLTKF 523
Y E + + + K+W LYA E + F G ++ K P ++ Y+
Sbjct: 485 YQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELE 543
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
L + +R R L+E+ LE P G A A+YE A
Sbjct: 544 LQL---REFDRCRKLYEKFLEFGPENCTSWIKFAELETIL--GDIERARAIYELAISQPR 598
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET---KLGEI 640
+ ++ YI E +TR +Y R ++ ++ + FA+ E K G +
Sbjct: 599 LDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHV---KVWISFAQFELSSGKEGSL 655
Query: 641 DRARAIYAHCSQI---CDPRVTA-GFWAAWKSFEITHGN-------EDTMREMLRIKRSV 689
+ R IY ++ C+ + +W++FE G + M E ++ +R V
Sbjct: 656 AKCRQIYEEANKTMRNCEEKEERLMLLESWRNFEDEFGTASDKERVDKLMPEKVKKRRKV 715
Query: 690 QA 691
QA
Sbjct: 716 QA 717
Score = 85 (35.0 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 27/100 (27%), Positives = 45/100 (45%)
Query: 350 NPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDP---KLAVGKLHTLWIEFGKFYEV 404
NPHN W +RL D + + Y A+ V P K + LWI + + E+
Sbjct: 414 NPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEKRHWKRYIYLWINYALYEEL 473
Query: 405 NDQ-LEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
+ E R ++ + L+P+ K A +W +A+ E+R
Sbjct: 474 EAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQFEIR 512
Score = 83 (34.3 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 41/210 (19%), Positives = 85/210 (40%)
Query: 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153
TFE ++ + W+ Y ++ +I + R +++RAL ++ +W Y
Sbjct: 153 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV--DYRNITLWLKYAEMEM 210
Query: 154 SHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDE-AAVKLAYIVNKESFVSKHGKS 212
+ A ++ R + P + + +Y E L A + + E ++ +
Sbjct: 211 KNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVF----ERWME--WRP 264
Query: 213 NHQLWNELC--EMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFER 270
Q W+ E+ + D+ R++ + I + + D W A + + G F
Sbjct: 265 EEQAWHSYINFELRYKEVDRARTI-YERYIHSLVLVHPDVKN--WIKYARFEEKHGYFAH 321
Query: 271 ARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
AR +YE A++ ++ A+A+FEE
Sbjct: 322 ARKVYERAVEFFGDEHMDEHLYVAFAKFEE 351
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445
WI++ ++ E +++ AR I+++A V Y + T+W ++AE+E++ Q
Sbjct: 168 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQ 214
Score = 65 (27.9 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 362 RLFDGK-PLDI-IRTYTEAVKTVDPKLAVGKLH-TLWIEFGKFYEVNDQLEDARLIFDKA 418
+LF G L++ +R + K + L G + T WI+F + + +E AR I++ A
Sbjct: 534 KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELA 593
Query: 419 TLVPYTKVEDLATVWCEWAELELRAGQEE 447
P + ++ +W + + E+ QEE
Sbjct: 594 ISQPRLDMPEV--LWKSYIDFEIE--QEE 618
Score = 50 (22.7 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 357 WHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFD 416
WH + F+ + ++ R T + + + V WI++ +F E + AR +++
Sbjct: 269 WHSYIN-FELRYKEVDRARTIYERYIHSLVLVHPDVKNWIKYARFEEKHGYFAHARKVYE 327
Query: 417 KA 418
+A
Sbjct: 328 RA 329
Score = 49 (22.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 351 PHNVLEWHKRVRLFDGKPLDIIRT---YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407
P N W K L + DI R Y A+ P+L + ++ LW + F ++
Sbjct: 564 PENCTSWIKFAEL-ETILGDIERARAIYELAIS--QPRLDMPEV--LWKSYIDFEIEQEE 618
Query: 408 LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446
E R ++ + L+ T+ VW +A+ EL +G+E
Sbjct: 619 TERTRNLYRR--LLQRTQH---VKVWISFAQFELSSGKE 652
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 146 (56.5 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 79/323 (24%), Positives = 132/323 (40%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXX 453
L++ F KF E + E R+I+ K L +K ++ ++ + E + G
Sbjct: 254 LYVAFAKFEENQKEFERVRVIY-KYALDRISK-QEAQELFKNYTIFEKKFGDRRGIEDII 311
Query: 454 XXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG---TFK-AYEKGIALFK- 508
Y +E V+A + + W Y L ES T + YE+ IA
Sbjct: 312 VSKRRFQ-----YEEE---VKANPH-NYDAWFDYLRLVESDAEADTVREVYERAIANVPP 362
Query: 509 ------WP-YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXX 561
W YI+ +W Y ER R +++ LE P +
Sbjct: 363 IQEKRHWKRYIY-LWVNYA--LYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYA 419
Query: 562 XXXHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620
+ + + RA G + + ++F YI+ ++ + R++YE+ +E PE
Sbjct: 420 QFE--IRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE 477
Query: 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDT 678
T +KFAE+ET LG+I+RARAIY I PR+ W ++ FEI E+T
Sbjct: 478 NCTSW--IKFAELETILGDIERARAIYELA--ISQPRLDMPEVLWKSYIDFEIEQ--EET 531
Query: 679 MREMLRIKRSVQAQYNTQVLFTF 701
R ++ +Q + +V +F
Sbjct: 532 ERTRNLYRQLLQRTQHVKVWISF 554
Score = 140 (54.3 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 57/294 (19%), Positives = 126/294 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKA-IINTIYERSLKELPG--SYKLWYNYLKLRRK 76
YEEE+ NP + W Y+ ++ +A + +YER++ +P + W Y+ L
Sbjct: 319 YEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVN 378
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFDRA 132
+ + E ++ SL + HK ++WL Y +F + Q + R +
Sbjct: 379 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTS 438
Query: 133 LRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEA 192
+ P ++++ Y+ + +++ ++L+ PE+ +I++ + +E +
Sbjct: 439 IGKCP---KNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKF-AELETI-LG 493
Query: 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252
++ A + + + LW + + + R+ N + R L+R T +
Sbjct: 494 DIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRN---LYRQLLQR-TQHV- 548
Query: 253 HLWNSLADYYIRSGL---FERARDIYEEAIQTVTTVRDFTQ---VFDAYAQFEE 300
+W S A + + SG + R IYEEA +T+ + + + +++ FE+
Sbjct: 549 KVWISFAQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFED 602
Score = 133 (51.9 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 64/299 (21%), Positives = 131/299 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
YE + + ++ WL+Y E + KN I++R++ LP + WY Y + +++
Sbjct: 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYM--EEM 161
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
G V FER + + + + W Y F + ++ + R +++R + P
Sbjct: 162 LGNVA------GARQVFERWMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPA 214
Query: 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERLDE-AAV 194
++ W Y F + HA A +V+ R ++ F ++ D Y+ + E E V
Sbjct: 215 VKN---WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV 271
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG-- 252
++ Y + +SK + +L+ + D+ R + D I+ +Y +++
Sbjct: 272 RVIYKYALDR-ISK--QEAQELFKNYTIFEKKFGDR-RGIE-DIIVSKRRFQYEEEVKAN 326
Query: 253 -HLWNSLADYY--IRSGL-FERARDIYEEAIQTVTTVRD------FTQVFDAYAQFEEL 301
H +++ DY + S + R++YE AI V +++ + ++ YA +EEL
Sbjct: 327 PHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEEL 385
Score = 132 (51.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 62/262 (23%), Positives = 113/262 (43%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE-RSLVFMHKMPRIWLD 111
YE +K P +Y W++YL+L + + + + N + + +W++
Sbjct: 319 YEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVN 378
Query: 112 YGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSF-VKSHAVPETAVRVFRR 167
Y + ++ +TR V+ +L +P + ++W Y F ++ +P A R
Sbjct: 379 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLP-FARRALGT 437
Query: 168 YLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM-- 223
+ P++ + YIE + D KL Y E F+ + G N W + E+
Sbjct: 438 SIGKCPKNKLFKGYIELELQLREFDRCR-KL-Y----EKFL-EFGPENCTSWIKFAELET 490
Query: 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283
I + ++ R++ AI + L D LW S D+ I ER R++Y + +Q
Sbjct: 491 ILGDIERARAIYELAISQPRL----DMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQ 546
Query: 284 TVRDFTQVFDAYAQFEELSLNK 305
V+ V+ ++AQFE LS K
Sbjct: 547 HVK----VWISFAQFE-LSSGK 563
Score = 125 (49.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 65/300 (21%), Positives = 128/300 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPK-AIINTIYERSLKELPGSYKLWYNYL--KLRRK 76
++ I P + W +Y ++ A ++ER ++ P + W++Y+ +LR K
Sbjct: 138 WDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEE-QAWHSYINFELRYK 196
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136
+V E +ER V +H + W+ Y RF R V++RA+
Sbjct: 197 EV----------ERARTIYER-FVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFF 245
Query: 137 PITQHHRVWPLYLSFVKSHAVPET--AVRVFRRYL--KLFPEDAEDYIEYLSSIERL--D 190
H LY++F K + VRV +Y ++ ++A++ + + E+ D
Sbjct: 246 G--DEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGD 303
Query: 191 EAAVKLAYIVNKESFVS----KHGKSNHQLWNELCEMISQNP--DKIRSLNVDAIIRGGL 244
++ IV+K F K N+ W + ++ + D +R + AI
Sbjct: 304 RRGIE-DIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPP 362
Query: 245 ---RRYTDQLGHLWNSLADYY-IRSGLFERARDIYEEAIQTVTTVR-DFTQVFDAYAQFE 299
+R+ + +LW + A Y + + ER R +Y+ +++ + + F +++ YAQFE
Sbjct: 363 IQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFE 422
Score = 120 (47.3 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 50/218 (22%), Positives = 101/218 (46%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
+ER+L ++ +WL Y M ++ R+++DRA+ LP + ++ W Y +
Sbjct: 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEM 161
Query: 155 HAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNH 214
A +VF R+++ PE+ + + Y++ R E V+ A + E FV H +
Sbjct: 162 LGNVAGARQVFERWMEWQPEE-QAWHSYINFELRYKE--VERARTIY-ERFVLVHPAVKN 217
Query: 215 QLWNELCEMISQNPDKIRSLNV-DAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARD 273
W + ++ + V + + + D+ HL+ + A + FER R
Sbjct: 218 --WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDE--HLYVAFAKFEENQKEFERVRV 273
Query: 274 IYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR-MEEI 310
IY+ A+ ++ ++ ++F Y FE+ ++R +E+I
Sbjct: 274 IYKYALDRISK-QEAQELFKNYTIFEKKFGDRRGIEDI 310
Score = 118 (46.6 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 35/165 (21%), Positives = 78/165 (47%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIYERSLKELPGSYKLWYNYLKLRRKQ 77
+E+ I +N + +W++Y + +++ K I +IYER+L + LW Y ++ +
Sbjct: 70 FEDNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERALDVDYRNITLWLKYAEM---E 125
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
+K + + N ++R++ + ++ + W Y + R VF+R + P
Sbjct: 126 MKNRQVNH-----ARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP 180
Query: 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
Q W Y++F + E A ++ R++ + P +++I+Y
Sbjct: 181 EEQ---AWHSYINFELRYKEVERARTIYERFVLVHPA-VKNWIKY 221
Score = 109 (43.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 51/226 (22%), Positives = 89/226 (39%)
Query: 478 YKSIKLWSLYADLEESFGTFKAYEKGI---ALFKWPYIFDIWN--TYLTKFLSRYGGTKL 532
Y++I LW YA++E + + I A+ P + W TY+ + L G
Sbjct: 112 YRNITLWLKYAEMEMKNRQVN-HARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAG--- 167
Query: 533 ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFN 592
AR +FE+ +E P A +YER VL + +
Sbjct: 168 --ARQVFERWMEWQPEEQAWHSYINFELRYKE---VERARTIYERF---VLVHPAVKNWI 219
Query: 593 IYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIYAHCS 651
Y + + R++YERA+E +E + + + FA+ E E +R R IY +
Sbjct: 220 KYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYAL 279
Query: 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + + FE G+ + +++ KR + QY +V
Sbjct: 280 DRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKR--RFQYEEEV 323
Score = 88 (36.0 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 350 NPHNVLEWHKRVRLFDGKP-LDIIR-TYTEAVKTVDP---KLAVGKLHTLWIEFGKFYEV 404
NPHN W +RL + D +R Y A+ V P K + LW+ + + E+
Sbjct: 326 NPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEEL 385
Query: 405 NDQ-LEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
+ E R ++ + L+P+ K A +W +A+ E+R
Sbjct: 386 EAKDPERTRQVYQASLELIPHKKFT-FAKMWLYYAQFEIR 424
Score = 87 (35.7 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 52/242 (21%), Positives = 91/242 (37%)
Query: 466 YHDEAETVQARVYKSIKLWSLYADLE--ESFGTFKAYEKGIALFKWPYIFDIWNTYLTKF 523
Y E + + + K+W YA E + F G ++ K P ++ Y+
Sbjct: 397 YQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELE 455
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
L + +R R L+E+ LE P G A A+YE A
Sbjct: 456 LQL---REFDRCRKLYEKFLEFGPENCTSWIKFAELETIL--GDIERARAIYELAISQPR 510
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET---KLGEI 640
+ ++ YI E +TR +Y + ++ ++ + FA+ E K G +
Sbjct: 511 LDMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHV---KVWISFAQFELSSGKEGSV 567
Query: 641 DRARAIYAHCSQI---CDPRVTA-GFWAAWKSFEITHGN-------EDTMREMLRIKRSV 689
+ R IY ++ C+ + +W+SFE G + M E ++ +R V
Sbjct: 568 AKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRRKV 627
Query: 690 QA 691
QA
Sbjct: 628 QA 629
Score = 76 (31.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445
WI++ ++ E +++ AR I+++A V Y + T+W ++AE+E++ Q
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQ 130
Score = 65 (27.9 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 362 RLFDGK-PLDI-IRTYTEAVKTVDPKLAVGKLH-TLWIEFGKFYEVNDQLEDARLIFDKA 418
+LF G L++ +R + K + L G + T WI+F + + +E AR I++ A
Sbjct: 446 KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELA 505
Query: 419 TLVPYTKVEDLATVWCEWAELELRAGQEE 447
P + ++ +W + + E+ QEE
Sbjct: 506 ISQPRLDMPEV--LWKSYIDFEIE--QEE 530
Score = 62 (26.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 37/210 (17%), Positives = 81/210 (38%)
Query: 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153
TFE ++ + W+ Y ++ +I + R +++RAL ++ +W Y
Sbjct: 69 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV--DYRNITLWLKYAEMEM 126
Query: 154 SHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSN 213
+ A ++ R + P + + +Y E L A E ++ +
Sbjct: 127 KNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVF---ERWME--WQPE 181
Query: 214 HQLWNELC--EMISQNPDKIRSLNVD-AIIRGGLRRYTDQLGHLWNSLADYYIRSGLFER 270
Q W+ E+ + ++ R++ ++ ++ W A + + F
Sbjct: 182 EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN--------WIKYARFEEKHAYFAH 233
Query: 271 ARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
AR +YE A++ ++ A+A+FEE
Sbjct: 234 ARKVYERAVEFFGDEHMDEHLYVAFAKFEE 263
Score = 48 (22.0 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 351 PHNVLEWHKRVRLFDGKPLDIIRT---YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407
P N W K L + DI R Y A+ P+L + ++ LW + F ++
Sbjct: 476 PENCTSWIKFAEL-ETILGDIERARAIYELAIS--QPRLDMPEV--LWKSYIDFEIEQEE 530
Query: 408 LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446
E R ++ + L+ T+ VW +A+ EL +G+E
Sbjct: 531 TERTRNLYRQ--LLQRTQH---VKVWISFAQFELSSGKE 564
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 146 (56.5 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 79/323 (24%), Positives = 132/323 (40%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXX 453
L++ F KF E + E R+I+ K L +K ++ ++ + E + G
Sbjct: 254 LYVAFAKFEENQKEFERVRVIY-KYALDRISK-QEAQELFKNYTIFEKKFGDRRGIEDII 311
Query: 454 XXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG---TFK-AYEKGIALFK- 508
Y +E V+A + + W Y L ES T + YE+ IA
Sbjct: 312 VSKRRFQ-----YEEE---VKANPH-NYDAWFDYLRLVESDAEADTVREVYERAIANVPP 362
Query: 509 ------WP-YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXX 561
W YI+ +W Y ER R +++ LE P +
Sbjct: 363 IQEKRHWKRYIY-LWVNYA--LYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYA 419
Query: 562 XXXHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620
+ + + RA G + + ++F YI+ ++ + R++YE+ +E PE
Sbjct: 420 QFE--IRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE 477
Query: 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDT 678
T +KFAE+ET LG+I+RARAIY I PR+ W ++ FEI E+T
Sbjct: 478 NCTSW--IKFAELETILGDIERARAIYELA--ISQPRLDMPEVLWKSYIDFEIEQ--EET 531
Query: 679 MREMLRIKRSVQAQYNTQVLFTF 701
R ++ +Q + +V +F
Sbjct: 532 ERTRNLYRQLLQRTQHVKVWISF 554
Score = 140 (54.3 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 57/294 (19%), Positives = 126/294 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKA-IINTIYERSLKELPG--SYKLWYNYLKLRRK 76
YEEE+ NP + W Y+ ++ +A + +YER++ +P + W Y+ L
Sbjct: 319 YEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVN 378
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFDRA 132
+ + E ++ SL + HK ++WL Y +F + Q + R +
Sbjct: 379 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTS 438
Query: 133 LRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEA 192
+ P ++++ Y+ + +++ ++L+ PE+ +I++ + +E +
Sbjct: 439 IGKCP---KNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKF-AELETI-LG 493
Query: 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252
++ A + + + LW + + + R+ N + R L+R T +
Sbjct: 494 DIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRN---LYRQLLQR-TQHV- 548
Query: 253 HLWNSLADYYIRSGL---FERARDIYEEAIQTVTTVRDFTQ---VFDAYAQFEE 300
+W S A + + SG + R IYEEA +T+ + + + +++ FE+
Sbjct: 549 KVWISFAQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFED 602
Score = 133 (51.9 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 64/299 (21%), Positives = 131/299 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
YE + + ++ WL+Y E + KN I++R++ LP + WY Y + +++
Sbjct: 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYM--EEM 161
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
G V FER + + + + W Y F + ++ + R +++R + P
Sbjct: 162 LGNVA------GARQVFERWMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPA 214
Query: 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERLDE-AAV 194
++ W Y F + HA A +V+ R ++ F ++ D Y+ + E E V
Sbjct: 215 VKN---WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV 271
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG-- 252
++ Y + +SK + +L+ + D+ R + D I+ +Y +++
Sbjct: 272 RVIYKYALDR-ISK--QEAQELFKNYTIFEKKFGDR-RGIE-DIIVSKRRFQYEEEVKAN 326
Query: 253 -HLWNSLADYY--IRSGL-FERARDIYEEAIQTVTTVRD------FTQVFDAYAQFEEL 301
H +++ DY + S + R++YE AI V +++ + ++ YA +EEL
Sbjct: 327 PHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEEL 385
Score = 132 (51.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 62/262 (23%), Positives = 113/262 (43%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE-RSLVFMHKMPRIWLD 111
YE +K P +Y W++YL+L + + + + N + + +W++
Sbjct: 319 YEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVN 378
Query: 112 YGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSF-VKSHAVPETAVRVFRR 167
Y + ++ +TR V+ +L +P + ++W Y F ++ +P A R
Sbjct: 379 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLP-FARRALGT 437
Query: 168 YLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM-- 223
+ P++ + YIE + D KL Y E F+ + G N W + E+
Sbjct: 438 SIGKCPKNKLFKGYIELELQLREFDRCR-KL-Y----EKFL-EFGPENCTSWIKFAELET 490
Query: 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283
I + ++ R++ AI + L D LW S D+ I ER R++Y + +Q
Sbjct: 491 ILGDIERARAIYELAISQPRL----DMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQ 546
Query: 284 TVRDFTQVFDAYAQFEELSLNK 305
V+ V+ ++AQFE LS K
Sbjct: 547 HVK----VWISFAQFE-LSSGK 563
Score = 125 (49.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 65/300 (21%), Positives = 128/300 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPK-AIINTIYERSLKELPGSYKLWYNYL--KLRRK 76
++ I P + W +Y ++ A ++ER ++ P + W++Y+ +LR K
Sbjct: 138 WDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEE-QAWHSYINFELRYK 196
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136
+V E +ER V +H + W+ Y RF R V++RA+
Sbjct: 197 EV----------ERARTIYER-FVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFF 245
Query: 137 PITQHHRVWPLYLSFVKSHAVPET--AVRVFRRYL--KLFPEDAEDYIEYLSSIERL--D 190
H LY++F K + VRV +Y ++ ++A++ + + E+ D
Sbjct: 246 G--DEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGD 303
Query: 191 EAAVKLAYIVNKESFVS----KHGKSNHQLWNELCEMISQNP--DKIRSLNVDAIIRGGL 244
++ IV+K F K N+ W + ++ + D +R + AI
Sbjct: 304 RRGIE-DIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPP 362
Query: 245 ---RRYTDQLGHLWNSLADYY-IRSGLFERARDIYEEAIQTVTTVR-DFTQVFDAYAQFE 299
+R+ + +LW + A Y + + ER R +Y+ +++ + + F +++ YAQFE
Sbjct: 363 IQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFE 422
Score = 120 (47.3 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 50/218 (22%), Positives = 101/218 (46%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
+ER+L ++ +WL Y M ++ R+++DRA+ LP + ++ W Y +
Sbjct: 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEM 161
Query: 155 HAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNH 214
A +VF R+++ PE+ + + Y++ R E V+ A + E FV H +
Sbjct: 162 LGNVAGARQVFERWMEWQPEE-QAWHSYINFELRYKE--VERARTIY-ERFVLVHPAVKN 217
Query: 215 QLWNELCEMISQNPDKIRSLNV-DAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARD 273
W + ++ + V + + + D+ HL+ + A + FER R
Sbjct: 218 --WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDE--HLYVAFAKFEENQKEFERVRV 273
Query: 274 IYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR-MEEI 310
IY+ A+ ++ ++ ++F Y FE+ ++R +E+I
Sbjct: 274 IYKYALDRISK-QEAQELFKNYTIFEKKFGDRRGIEDI 310
Score = 118 (46.6 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 35/165 (21%), Positives = 78/165 (47%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIYERSLKELPGSYKLWYNYLKLRRKQ 77
+E+ I +N + +W++Y + +++ K I +IYER+L + LW Y ++ +
Sbjct: 70 FEDNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERALDVDYRNITLWLKYAEM---E 125
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
+K + + N ++R++ + ++ + W Y + R VF+R + P
Sbjct: 126 MKNRQVNH-----ARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP 180
Query: 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
Q W Y++F + E A ++ R++ + P +++I+Y
Sbjct: 181 EEQ---AWHSYINFELRYKEVERARTIYERFVLVHPA-VKNWIKY 221
Score = 109 (43.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 51/226 (22%), Positives = 89/226 (39%)
Query: 478 YKSIKLWSLYADLEESFGTFKAYEKGI---ALFKWPYIFDIWN--TYLTKFLSRYGGTKL 532
Y++I LW YA++E + + I A+ P + W TY+ + L G
Sbjct: 112 YRNITLWLKYAEMEMKNRQVN-HARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAG--- 167
Query: 533 ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFN 592
AR +FE+ +E P A +YER VL + +
Sbjct: 168 --ARQVFERWMEWQPEEQAWHSYINFELRYKE---VERARTIYERF---VLVHPAVKNWI 219
Query: 593 IYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIYAHCS 651
Y + + R++YERA+E +E + + + FA+ E E +R R IY +
Sbjct: 220 KYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYAL 279
Query: 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + + FE G+ + +++ KR + QY +V
Sbjct: 280 DRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKR--RFQYEEEV 323
Score = 88 (36.0 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 350 NPHNVLEWHKRVRLFDGKP-LDIIR-TYTEAVKTVDP---KLAVGKLHTLWIEFGKFYEV 404
NPHN W +RL + D +R Y A+ V P K + LW+ + + E+
Sbjct: 326 NPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEEL 385
Query: 405 NDQ-LEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
+ E R ++ + L+P+ K A +W +A+ E+R
Sbjct: 386 EAKDPERTRQVYQASLELIPHKKFT-FAKMWLYYAQFEIR 424
Score = 87 (35.7 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 52/242 (21%), Positives = 91/242 (37%)
Query: 466 YHDEAETVQARVYKSIKLWSLYADLE--ESFGTFKAYEKGIALFKWPYIFDIWNTYLTKF 523
Y E + + + K+W YA E + F G ++ K P ++ Y+
Sbjct: 397 YQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELE 455
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
L + +R R L+E+ LE P G A A+YE A
Sbjct: 456 LQL---REFDRCRKLYEKFLEFGPENCTSWIKFAELETIL--GDIERARAIYELAISQPR 510
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET---KLGEI 640
+ ++ YI E +TR +Y + ++ ++ + FA+ E K G +
Sbjct: 511 LDMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHV---KVWISFAQFELSSGKEGSV 567
Query: 641 DRARAIYAHCSQI---CDPRVTA-GFWAAWKSFEITHGN-------EDTMREMLRIKRSV 689
+ R IY ++ C+ + +W+SFE G + M E ++ +R V
Sbjct: 568 AKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRRKV 627
Query: 690 QA 691
QA
Sbjct: 628 QA 629
Score = 76 (31.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445
WI++ ++ E +++ AR I+++A V Y + T+W ++AE+E++ Q
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQ 130
Score = 65 (27.9 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 362 RLFDGK-PLDI-IRTYTEAVKTVDPKLAVGKLH-TLWIEFGKFYEVNDQLEDARLIFDKA 418
+LF G L++ +R + K + L G + T WI+F + + +E AR I++ A
Sbjct: 446 KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELA 505
Query: 419 TLVPYTKVEDLATVWCEWAELELRAGQEE 447
P + ++ +W + + E+ QEE
Sbjct: 506 ISQPRLDMPEV--LWKSYIDFEIE--QEE 530
Score = 62 (26.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 37/210 (17%), Positives = 81/210 (38%)
Query: 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153
TFE ++ + W+ Y ++ +I + R +++RAL ++ +W Y
Sbjct: 69 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV--DYRNITLWLKYAEMEM 126
Query: 154 SHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSN 213
+ A ++ R + P + + +Y E L A E ++ +
Sbjct: 127 KNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVF---ERWME--WQPE 181
Query: 214 HQLWNELC--EMISQNPDKIRSLNVD-AIIRGGLRRYTDQLGHLWNSLADYYIRSGLFER 270
Q W+ E+ + ++ R++ ++ ++ W A + + F
Sbjct: 182 EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN--------WIKYARFEEKHAYFAH 233
Query: 271 ARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
AR +YE A++ ++ A+A+FEE
Sbjct: 234 ARKVYERAVEFFGDEHMDEHLYVAFAKFEE 263
Score = 48 (22.0 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 351 PHNVLEWHKRVRLFDGKPLDIIRT---YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407
P N W K L + DI R Y A+ P+L + ++ LW + F ++
Sbjct: 476 PENCTSWIKFAEL-ETILGDIERARAIYELAIS--QPRLDMPEV--LWKSYIDFEIEQEE 530
Query: 408 LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446
E R ++ + L+ T+ VW +A+ EL +G+E
Sbjct: 531 TERTRNLYRQ--LLQRTQH---VKVWISFAQFELSSGKE 564
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 147 (56.8 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 77/323 (23%), Positives = 135/323 (41%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELRAGQEEXXXXX 452
L++ F +F E + E R+I+ A +P + ++L + + E R G
Sbjct: 254 LYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQEL---FKNYTVFEKRFGDRRGIEDV 310
Query: 453 XXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG---TFK-AYEKGIALFK 508
Y +E V+A + + W Y L ES T + YE+ IA
Sbjct: 311 IVSKRRFQ-----YEEE---VKANPH-NYDAWFDYLRLVESDADADTVREVYERAIANI- 360
Query: 509 WPYIFDI--WNTYLTKFLSR--YGGTKL---ERARDLFEQCLEACPPRXXXXXXXXXXXX 561
P I + W Y+ +++ Y ++ ER R +++ CLE P +
Sbjct: 361 -PPIQEKRHWRRYIYLWINYALYEELEVKDPERTRQVYKACLELIPHKKFTFAKIWLLYG 419
Query: 562 XXXHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620
+ + + R G + + ++F YI+ ++ + R++YE+ +E PE
Sbjct: 420 QFE--IRQKNLQNARRGLGTAIGKCPKNKLFKGYIELELQLREFDRCRKLYEKYLEFSPE 477
Query: 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDT 678
T +KFAE+ET LG+ DR+RAI+ I PR+ W ++ FEI D
Sbjct: 478 NCTTW--IKFAELETILGDTDRSRAIFELA--IGQPRLDMPEVLWKSYIDFEIEQEEYDN 533
Query: 679 MREMLRIKRSVQAQYNTQVLFTF 701
R + KR +Q + +V ++
Sbjct: 534 TRGLY--KRLLQRTQHVKVWISY 554
Score = 129 (50.5 bits), Expect = 0.00013, P = 0.00013
Identities = 62/299 (20%), Positives = 119/299 (39%)
Query: 20 YEEEILRNPFSVKHWLRYIEH-KKNAPKAIINTIYERSLKELPG--SYKLW--YNYLKLR 74
YEEE+ NP + W Y+ + +A + +YER++ +P + W Y YL +
Sbjct: 319 YEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRYIYLWIN 378
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFD 130
+ + DP E ++ L + HK +IWL YG+F + Q + R
Sbjct: 379 YALYEELEVKDP--ERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNARRGLG 436
Query: 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLD 190
A+ P ++++ Y+ + +++ +YL+ PE+ +I++ L
Sbjct: 437 TAIGKCP---KNKLFKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILG 493
Query: 191 EAAVKLAYIVNKESFVSKHGKSNHQ-LWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249
+ A E + + + LW + +I D RG +R
Sbjct: 494 DTDRSRAIF---ELAIGQPRLDMPEVLWKSYIDF------EIEQEEYDNT-RGLYKRLLQ 543
Query: 250 QLGHL--WNSLADYYIR---SGLFERARDIYEEA---IQTVTTVRDFTQVFDAYAQFEE 300
+ H+ W S A + + +R R +YEEA +Q + + +++ +EE
Sbjct: 544 RTQHVKVWISYAQFELSIDTEDRVQRCRQVYEEANKGMQNCEEKEERLMLLESWRDYEE 602
Score = 127 (49.8 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 60/301 (19%), Positives = 132/301 (43%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
YE + + ++ WL+Y E + KN I++R++ LP + WY Y + +++
Sbjct: 103 YERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQFWYKYTYM--EEM 160
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
G + FER + + + + W Y F + ++ + R ++++AL + +
Sbjct: 161 LGNIA------GCRQVFERWMEWEPE-EQAWHSYINFELRYKEVDKARSIYEKAL--VMV 211
Query: 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED--AED-YIEYLSSIERLDE-AAV 194
+ W Y F + H +VF R ++ F E+ +E+ Y+ + E+ E V
Sbjct: 212 HPEVKNWIKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERV 271
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG-- 252
++ Y + + + +L+ + D+ R + D I+ +Y +++
Sbjct: 272 RVIYKYALDRIPKQQAQ---ELFKNYTVFEKRFGDR-RGIE-DVIVSKRRFQYEEEVKAN 326
Query: 253 -HLWNSLADYY--IRSGL-FERARDIYEEAIQTVTTVRD------FTQVFDAYAQFEELS 302
H +++ DY + S + R++YE AI + +++ + ++ YA +EEL
Sbjct: 327 PHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRYIYLWINYALYEELE 386
Query: 303 L 303
+
Sbjct: 387 V 387
Score = 124 (48.7 bits), Expect = 0.00044, P = 0.00044
Identities = 58/258 (22%), Positives = 105/258 (40%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE-RSLVFMHKMPRIWLD 111
YE +K P +Y W++YL+L + + + N + + +W++
Sbjct: 319 YEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRYIYLWIN 378
Query: 112 YGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSFVKSHAVPETAVRVFRRY 168
Y + ++ +TR V+ L +P + ++W LY F + A R
Sbjct: 379 YALYEELEVKDPERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNARRGLGTA 438
Query: 169 LKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQ 226
+ P++ + YIE + D KL Y E ++ + N W + E+ +
Sbjct: 439 IGKCPKNKLFKGYIELELQLREFDRCR-KL-Y----EKYL-EFSPENCTTWIKFAELETI 491
Query: 227 NPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVR 286
D RS + + G R D LW S D+ I ++ R +Y+ +Q V+
Sbjct: 492 LGDTDRSRAIFELAIGQPR--LDMPEVLWKSYIDFEIEQEEYDNTRGLYKRLLQRTQHVK 549
Query: 287 DFTQVFDAYAQFEELSLN 304
V+ +YAQFE LS++
Sbjct: 550 ----VWISYAQFE-LSID 562
Score = 122 (48.0 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 56/230 (24%), Positives = 99/230 (43%)
Query: 478 YKSIKLWSLYADLE----ESFGTFKAYEKGIALFKWPYIFDIWN--TYLTKFLSRYGGTK 531
+++I LW YA++E + +++ I + P + W TY+ + L G
Sbjct: 111 HRNITLWLKYAEMEMKNRQVNHARNIWDRAITIL--PRVNQFWYKYTYMEEMLGNIAG-- 166
Query: 532 LERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMF 591
R +FE+ +E P AR ++YE+A V PE +
Sbjct: 167 ---CRQVFERWMEWEPEEQAWHSYINFELRYKEVDKAR---SIYEKALVMVHPE----VK 216
Query: 592 NIYIKKA--AEIYG-IPKTRQIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIY 647
N +IK A E +G + + R+++ERA+E EE + + + FA E K E +R R IY
Sbjct: 217 N-WIKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIY 275
Query: 648 AHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + + + FE G+ + +++ KR + QY +V
Sbjct: 276 KYALDRIPKQQAQELFKNYTVFEKRFGDRRGIEDVIVSKR--RFQYEEEV 323
Score = 117 (46.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 59/267 (22%), Positives = 117/267 (43%)
Query: 52 IYERSLKELPGSYKLWYNYL--KLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIW 109
++ER ++ P + W++Y+ +LR K+V + + +E++LV +H + W
Sbjct: 170 VFERWMEWEPEE-QAWHSYINFELRYKEV----------DKARSIYEKALVMVHPEVKNW 218
Query: 110 LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPET--AVRVFRR 167
+ Y F + + R VF+RA+ Q LY++F + + VRV +
Sbjct: 219 IKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSE--NLYVAFARFEEKQKEFERVRVIYK 276
Query: 168 Y-LKLFP-EDAEDYIEYLSSIERL--DEAAVKLAYIVNKESFVS----KHGKSNHQLWNE 219
Y L P + A++ + + E+ D ++ IV+K F K N+ W +
Sbjct: 277 YALDRIPKQQAQELFKNYTVFEKRFGDRRGIE-DVIVSKRRFQYEEEVKANPHNYDAWFD 335
Query: 220 LCEMISQNPDK--IRSLNVDAIIRGGL---RRYTDQLGHLWNSLADYY-IRSGLFERARD 273
++ + D +R + AI +R+ + +LW + A Y + ER R
Sbjct: 336 YLRLVESDADADTVREVYERAIANIPPIQEKRHWRRYIYLWINYALYEELEVKDPERTRQ 395
Query: 274 IYEEAIQTVTTVR-DFTQVFDAYAQFE 299
+Y+ ++ + + F +++ Y QFE
Sbjct: 396 VYKACLELIPHKKFTFAKIWLLYGQFE 422
Score = 114 (45.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 32/164 (19%), Positives = 77/164 (46%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAIIN-TIYERSLKELPGSYKLWYNYLKLRRKQV 78
+E+ I +N + +W++Y + +++ + + +IYER+L + LW Y ++ ++
Sbjct: 69 FEDNIRKNRTVISNWIKYAQWEESLQEVQRSRSIYERALDVDHRNITLWLKYAEM---EM 125
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
K + + N ++R++ + ++ + W Y I R VF+R + P
Sbjct: 126 KNRQVNH-----ARNIWDRAITILPRVNQFWYKYTYMEEMLGNIAGCRQVFERWMEWEPE 180
Query: 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
Q W Y++F + + A ++ + L + + +++I+Y
Sbjct: 181 EQ---AWHSYINFELRYKEVDKARSIYEKALVMVHPEVKNWIKY 221
Score = 114 (45.2 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 48/219 (21%), Positives = 101/219 (46%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
+ER+L H+ +WL Y M ++ R+++DRA+ LP + ++ W Y +
Sbjct: 103 YERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILP--RVNQFWYKYTYMEEM 160
Query: 155 HAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNH 214
+VF R+++ PE+ + + Y++ R E V A + +++ V H + +
Sbjct: 161 LGNIAGCRQVFERWMEWEPEE-QAWHSYINFELRYKE--VDKARSIYEKALVMVHPEVKN 217
Query: 215 QLWNELCEMISQNPDKIRSLNV--DAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERAR 272
W + ++ R V A+ G + ++ +L+ + A + + FER R
Sbjct: 218 --WIKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSE---NLYVAFARFEEKQKEFERVR 272
Query: 273 DIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR-MEEI 310
IY+ A+ + + ++F Y FE+ ++R +E++
Sbjct: 273 VIYKYALDRIPK-QQAQELFKNYTVFEKRFGDRRGIEDV 310
Score = 85 (35.0 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 28/101 (27%), Positives = 44/101 (43%)
Query: 350 NPHNVLEWHKRVRLFDGKP-LDIIR-TYTEAVKTVDP---KLAVGKLHTLWIEFGKF--Y 402
NPHN W +RL + D +R Y A+ + P K + LWI + +
Sbjct: 326 NPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRYIYLWINYALYEEL 385
Query: 403 EVNDQLEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
EV D E R ++ L+P+ K A +W + + E+R
Sbjct: 386 EVKDP-ERTRQVYKACLELIPHKKFT-FAKIWLLYGQFEIR 424
Score = 81 (33.6 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 37/197 (18%), Positives = 81/197 (41%)
Query: 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRV--WPLYLSFVKSHAVPETAVRVFR 166
W+ Y ++ ++ ++R +++RAL H + W Y + A ++
Sbjct: 83 WIKYAQWEESLQEVQRSRSIYERALDV----DHRNITLWLKYAEMEMKNRQVNHARNIWD 138
Query: 167 RYLKLFPEDAEDYIEYLSSIERLDE-AAVKLAYIVNKESFVSKHGKSNHQLWNELC--EM 223
R + + P + + +Y E L A + + E ++ + Q W+ E+
Sbjct: 139 RAITILPRVNQFWYKYTYMEEMLGNIAGCRQVF----ERWME--WEPEEQAWHSYINFEL 192
Query: 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283
+ DK RS+ A++ ++ + W A + + G R R ++E A++
Sbjct: 193 RYKEVDKARSIYEKALVM-----VHPEVKN-WIKYAHFEEKHGYVARGRKVFERAVEFFG 246
Query: 284 TVRDFTQVFDAYAQFEE 300
+ ++ A+A+FEE
Sbjct: 247 EEQVSENLYVAFARFEE 263
Score = 68 (29.0 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 13/51 (25%), Positives = 32/51 (62%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445
WI++ ++ E +++ +R I+++A V + + T+W ++AE+E++ Q
Sbjct: 83 WIKYAQWEESLQEVQRSRSIYERALDVDHRNI----TLWLKYAEMEMKNRQ 129
Score = 54 (24.1 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 17/80 (21%), Positives = 34/80 (42%)
Query: 606 KTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAA 665
++R I+E AI + + + + E + E D R +Y Q V W +
Sbjct: 497 RSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLYKRLLQRTQ-HVKV--WIS 553
Query: 666 WKSFEITHGNEDTMREMLRI 685
+ FE++ ED ++ ++
Sbjct: 554 YAQFELSIDTEDRVQRCRQV 573
Score = 53 (23.7 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 362 RLFDGK-PLDI-IRTYTEAVKTVDPKLAVGKLH-TLWIEFGKFYEVNDQLEDARLIFDKA 418
+LF G L++ +R + K + L + T WI+F + + + +R IF+ A
Sbjct: 446 KLFKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILGDTDRSRAIFELA 505
Query: 419 TLVPYTKVEDLATVWCEWAELELRAGQEE 447
P + ++ +W + + E+ QEE
Sbjct: 506 IGQPRLDMPEV--LWKSYIDFEIE--QEE 530
Score = 46 (21.3 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 483 LWSLYADLE---ESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLF 539
LW Y D E E + + K + L + ++ +W +Y LS +++R R ++
Sbjct: 517 LWKSYIDFEIEQEEYDNTRGLYKRL-LQRTQHV-KVWISYAQFELSIDTEDRVQRCRQVY 574
Query: 540 EQ 541
E+
Sbjct: 575 EE 576
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 142 (55.0 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 80/323 (24%), Positives = 130/323 (40%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEXXXXXX 453
L++ F KF E + E R+I+ K L +K ++ ++ + E + G
Sbjct: 364 LYVAFAKFEENQKEFERVRVIY-KYALDRISK-QEAQELFKNYTIFEKKFGDRRGIEDII 421
Query: 454 XXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG---TFK-AYEKGIALFK- 508
Y +E V+A + + W Y L ES T + YE+ IA
Sbjct: 422 VSKRRFQ-----YEEE---VKANPH-NYDAWFDYLRLVESDAEAETVREVYERAIANVPP 472
Query: 509 ------WP-YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXX 561
W YI+ +W Y ER R +++ LE P +
Sbjct: 473 IQEKRHWKRYIY-LWVNYA--LYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYA 529
Query: 562 XXXHGLARHAMAVYERATG-AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620
++V T P+ ++F YI+ ++ + R++YE+ +E PE
Sbjct: 530 QFEIRQKNLPVSVSLLGTSIGKCPKN--KLFKGYIELELQLREFDRCRKLYEKFLEFGPE 587
Query: 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDT 678
T +KFAE+ET LG+I+RARAIY I PR+ W ++ FEI E+T
Sbjct: 588 NCTSW--IKFAELETILGDIERARAIYELA--ISQPRLDMPEVLWKSYIDFEIEQ--EET 641
Query: 679 MREMLRIKRSVQAQYNTQVLFTF 701
R +R +Q + +V +F
Sbjct: 642 ERTRNLYRRLLQRTQHVKVWISF 664
Score = 138 (53.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 62/262 (23%), Positives = 115/262 (43%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE-RSLVFMHKMPRIWLD 111
YE +K P +Y W++YL+L + + + + + N + + +W++
Sbjct: 429 YEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVN 488
Query: 112 YGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSF-VKSHAVPETAVRVFRR 167
Y + ++ +TR V+ +L +P + ++W LY F ++ +P +V +
Sbjct: 489 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLP-VSVSLLGT 547
Query: 168 YLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM-- 223
+ P++ + YIE + D KL Y E F+ + G N W + E+
Sbjct: 548 SIGKCPKNKLFKGYIELELQLREFDRCR-KL-Y----EKFL-EFGPENCTSWIKFAELET 600
Query: 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283
I + ++ R++ AI + L D LW S D+ I ER R++Y +Q
Sbjct: 601 ILGDIERARAIYELAISQPRL----DMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQ 656
Query: 284 TVRDFTQVFDAYAQFEELSLNK 305
V+ V+ ++AQFE LS K
Sbjct: 657 HVK----VWISFAQFE-LSSRK 673
Score = 135 (52.6 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 56/294 (19%), Positives = 126/294 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEH-KKNAPKAIINTIYERSLKELPG--SYKLWYNYLKLRRK 76
YEEE+ NP + W Y+ + +A + +YER++ +P + W Y+ L
Sbjct: 429 YEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVN 488
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFM-HK---MPRIWLDYGRFLMDQHKITQTRHVFDRA 132
+ + E ++ SL + HK ++WL Y +F + Q + + + +
Sbjct: 489 YALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPVSVSLLGTS 548
Query: 133 LRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEA 192
+ P ++++ Y+ + +++ ++L+ PE+ +I++ + +E +
Sbjct: 549 IGKCP---KNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKF-AELETI-LG 603
Query: 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252
++ A + + + LW + + + R+ N + R L+R T +
Sbjct: 604 DIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRN---LYRRLLQR-TQHV- 658
Query: 253 HLWNSLADYYIRS---GLFERARDIYEEAIQTVTTVRDFTQ---VFDAYAQFEE 300
+W S A + + S G + R IYEEA +T+ + + + +++ FE+
Sbjct: 659 KVWISFAQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFED 712
Score = 133 (51.9 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 49/220 (22%), Positives = 99/220 (45%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
+ER+L ++ +WL Y M ++ R+++DRA+ LP + ++ W Y +
Sbjct: 209 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEM 266
Query: 155 HAVPETAVRVFRRYLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKS 212
A +VF R+++ PE+ YI + + +D A + Y +N V H
Sbjct: 267 LGNIAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRART-IYYFLNSPELVLVHPDV 325
Query: 213 NHQLWNELCEMISQNPDKIRSLNV-DAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERA 271
+ W + ++ + V + + + D+ HL+ + A + FER
Sbjct: 326 KN--WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDE--HLYVAFAKFEENQKEFERV 381
Query: 272 RDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR-MEEI 310
R IY+ A+ ++ ++ ++F Y FE+ ++R +E+I
Sbjct: 382 RVIYKYALDRISK-QEAQELFKNYTIFEKKFGDRRGIEDI 420
Score = 114 (45.2 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 63/301 (20%), Positives = 127/301 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
YE + + ++ WL+Y E + KN I++R++ LP + WY Y + +++
Sbjct: 209 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYM--EEM 266
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138
G + FER + + + + W Y F + ++ + R ++ +
Sbjct: 267 LGNIA------GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYYFLNSPELV 319
Query: 139 TQHHRV--WPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERLDE-A 192
H V W Y F + H A +V+ R ++ F ++ D Y+ + E E
Sbjct: 320 LVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFE 379
Query: 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252
V++ Y + +SK + +L+ + D+ R + D I+ +Y +++
Sbjct: 380 RVRVIYKYALDR-ISK--QEAQELFKNYTIFEKKFGDR-RGIE-DIIVSKRRFQYEEEVK 434
Query: 253 ---HLWNSLADYY--IRSGL-FERARDIYEEAIQTVTTVRD------FTQVFDAYAQFEE 300
H +++ DY + S E R++YE AI V +++ + ++ YA +EE
Sbjct: 435 ANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEE 494
Query: 301 L 301
L
Sbjct: 495 L 495
Score = 103 (41.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 54/229 (23%), Positives = 94/229 (41%)
Query: 478 YKSIKLWSLYADLEESFGTFKAYEKGI---ALFKWPYIFDIWN--TYLTKFLSRYGGTKL 532
Y++I LW YA++E + + I A+ P + W TY+ + L G
Sbjct: 217 YRNITLWLKYAEMEMKNRQVN-HARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAG--- 272
Query: 533 ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFN 592
AR +FE+ +E P AR + + + VL ++ N
Sbjct: 273 --ARQVFERWMEWQPEEQAWHSYINFELRYKEVDRAR-TIYYFLNSPELVLVHP--DVKN 327
Query: 593 IYIKKAA--EIYG-IPKTRQIYERAIESLPEEPTRQ-MCLKFAEMETKLGEIDRARAIYA 648
+IK A E +G R++YERA+E +E + + + FA+ E E +R R IY
Sbjct: 328 -WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYK 386
Query: 649 HCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + + + FE G+ + +++ KR + QY +V
Sbjct: 387 YALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKR--RFQYEEEV 433
Score = 100 (40.3 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 37/171 (21%), Positives = 77/171 (45%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIYERSLKELPGSYKLWYNYLKLRRKQ 77
+E+ I +N + +W++Y + +++ K I +IYER+L + LW Y ++ +
Sbjct: 175 FEDNIRKNRTVISNWIKYAQWEESL-KEIQRARSIYERALDVDYRNITLWLKYAEM---E 230
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
+K + + N ++R++ + ++ + W Y I R VF+R + P
Sbjct: 231 MKNRQVNH-----ARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQP 285
Query: 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE------DAEDYIEY 182
Q W Y++F + + A ++ Y PE D +++I+Y
Sbjct: 286 EEQ---AWHSYINFELRYKEVDRARTIY--YFLNSPELVLVHPDVKNWIKY 331
Score = 88 (36.0 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 53/242 (21%), Positives = 90/242 (37%)
Query: 466 YHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK--GIALFKWPYIFDIWNTYLTKF 523
Y E + + + K+W LYA E G ++ K P ++ Y+
Sbjct: 507 YQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPVSVSLLGTSIGKCPKN-KLFKGYIELE 565
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
L + +R R L+E+ LE P G A A+YE A
Sbjct: 566 LQL---REFDRCRKLYEKFLEFGPENCTSWIKFAELETIL--GDIERARAIYELAISQPR 620
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET---KLGEI 640
+ ++ YI E +TR +Y R ++ ++ + FA+ E K G +
Sbjct: 621 LDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHV---KVWISFAQFELSSRKEGSL 677
Query: 641 DRARAIYAHCSQI---CDPRVTA-GFWAAWKSFEITHGN-------EDTMREMLRIKRSV 689
+ R IY ++ C+ + +W+SFE G + M E ++ +R V
Sbjct: 678 AKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRRKV 737
Query: 690 QA 691
QA
Sbjct: 738 QA 739
Score = 84 (34.6 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 350 NPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDP---KLAVGKLHTLWIEFGKFYEV 404
NPHN W +RL D + + Y A+ V P K + LW+ + + E+
Sbjct: 436 NPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEEL 495
Query: 405 NDQ-LEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
+ E R ++ + L+P+ K A +W +A+ E+R
Sbjct: 496 EAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQFEIR 534
Score = 76 (31.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445
WI++ ++ E +++ AR I+++A V Y + T+W ++AE+E++ Q
Sbjct: 189 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQ 235
Score = 72 (30.4 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 40/210 (19%), Positives = 83/210 (39%)
Query: 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153
TFE ++ + W+ Y ++ +I + R +++RAL ++ +W Y
Sbjct: 174 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDV--DYRNITLWLKYAEMEM 231
Query: 154 SHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDE-AAVKLAYIVNKESFVSKHGKS 212
+ A ++ R + P + + +Y E L A + + E ++ +
Sbjct: 232 KNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVF----ERWME--WQP 285
Query: 213 NHQLWNELC--EMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFER 270
Q W+ E+ + D+ R++ + + D W A + + G F
Sbjct: 286 EEQAWHSYINFELRYKEVDRARTIYYFLNSPELVLVHPDVKN--WIKYARFEEKHGYFAH 343
Query: 271 ARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
AR +YE A++ ++ A+A+FEE
Sbjct: 344 ARKVYERAVEFFGDEHMDEHLYVAFAKFEE 373
Score = 65 (27.9 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 362 RLFDGK-PLDI-IRTYTEAVKTVDPKLAVGKLH-TLWIEFGKFYEVNDQLEDARLIFDKA 418
+LF G L++ +R + K + L G + T WI+F + + +E AR I++ A
Sbjct: 556 KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELA 615
Query: 419 TLVPYTKVEDLATVWCEWAELELRAGQEE 447
P + ++ +W + + E+ QEE
Sbjct: 616 ISQPRLDMPEV--LWKSYIDFEIE--QEE 640
Score = 41 (19.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 25/99 (25%), Positives = 43/99 (43%)
Query: 351 PHNVLEWHKRVRLFDGKPLDIIRT---YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407
P N W K L + DI R Y A+ P+L + ++ LW + F ++
Sbjct: 586 PENCTSWIKFAEL-ETILGDIERARAIYELAIS--QPRLDMPEV--LWKSYIDFEIEQEE 640
Query: 408 LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446
E R ++ + L+ T+ VW +A+ EL + +E
Sbjct: 641 TERTRNLYRR--LLQRTQH---VKVWISFAQFELSSRKE 674
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 137 (53.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 43/183 (23%), Positives = 88/183 (48%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPK-AIINTIYERSLKELPGSY-KLWYNYLKLRRKQ 77
+E+ I RN ++ HW+RY + + + + A +++ER+L ++ +Y LW Y++ +
Sbjct: 59 FEDAIRRNRLAMGHWMRYGQWELDQKEFARARSVFERAL-DVDSTYIPLWLKYIEC---E 114
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137
+K + I N F+R++ + ++ ++W Y IT R VF+R L+ P
Sbjct: 115 MKNRNINH-----ARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEP 169
Query: 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA-VKL 196
W Y+ + + E A ++ R++ + PE +++ + E AA V+
Sbjct: 170 ---DENCWMSYIRMERRYHENERARGIYERFVVVHPE-VTNWLRWARFEEECGNAANVRQ 225
Query: 197 AYI 199
Y+
Sbjct: 226 VYL 228
Score = 133 (51.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 64/276 (23%), Positives = 120/276 (43%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYED----VNNTFERSLVFMHKMPRI 108
YE+ LK+ P Y W + LKL I + +YE V E++ + I
Sbjct: 308 YEKLLKDSPYDYDTWLDLLKLEESAGDINTIRE-TYEKAIAKVPEVVEKNA--WRRYVYI 364
Query: 109 WLDYGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSFVKSHAVPETAVRVF 165
WL+Y F +D + + R V+ AL+ +P + ++W +Y F + A +
Sbjct: 365 WLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARKTL 424
Query: 166 RRYLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM 223
R L + P+ YIE+ +I++ D ++ Y E ++ ++ W +
Sbjct: 425 GRALGMCPKPKLFRGYIEFEDAIKQFDRC--RILY----EKWILYDPEACAP-WLGYAAL 477
Query: 224 ISQ--NPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQT 281
++ + D+ R+L A+ + L T +L +W + D+ + +AR IY++ ++T
Sbjct: 478 ETKLGDSDRARALYNLAVNQPILE--TPEL--VWKAYIDFEFEEMEYGKARSIYQQLLRT 533
Query: 282 VTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPS 317
V+ V+ ++A FE L EE + S
Sbjct: 534 APHVK----VWISFANFEIAHLEDDDEEPPNEEVAS 565
Score = 131 (51.2 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 58/212 (27%), Positives = 97/212 (45%)
Query: 93 NTFERSL-VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSF 151
+ FER+L V +P +WL Y M I R++FDRA+ LP ++W Y+ +
Sbjct: 91 SVFERALDVDSTYIP-LWLKYIECEMKNRNINHARNLFDRAVTQLPRVD--KLWYKYV-Y 146
Query: 152 VKSHAVPETAVR-VFRRYLKLFPEDAEDYIEYLSSIERLDE-AAVKLAYIVNKESFVSKH 209
++ T R VF R+LK P D ++ Y+ R E + Y E FV H
Sbjct: 147 MEEMLGNITGCRQVFERWLKWEP-DENCWMSYIRMERRYHENERARGIY----ERFVVVH 201
Query: 210 GKSNHQL-WNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLF 268
+ + L W E N +R + + AI G + + ++ + + A + IR +
Sbjct: 202 PEVTNWLRWARFEEECG-NAANVRQVYLAAIDALG-QEFLNE--RFFIAFAKFEIRQKEY 257
Query: 269 ERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
ERAR I++ AI + + +++ Y FE+
Sbjct: 258 ERARTIFKYAIDFMPRSKSM-ELYKEYTHFEK 288
Score = 106 (42.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 56/204 (27%), Positives = 87/204 (42%)
Query: 484 WSLYADLEESFGTF----KAYEKGIALFKWPYIFD--IWNTYLTKFLS-----RYGGTKL 532
W LEES G + YEK IA K P + + W Y+ +L+ +
Sbjct: 322 WLDLLKLEESAGDINTIRETYEKAIA--KVPEVVEKNAWRRYVYIWLNYCLFEEIDVKDV 379
Query: 533 ERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL---PEEMFE 589
+RAR ++++ L+ P + L + + V + G L P+ +
Sbjct: 380 DRARKVYQEALKLIPHKKFTFAKLWLMYAMFE--LRQRKIDVARKTLGRALGMCPKP--K 435
Query: 590 MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY-- 647
+F YI+ I + R +YE+ I PE L +A +ETKLG+ DRARA+Y
Sbjct: 436 LFRGYIEFEDAIKQFDRCRILYEKWILYDPEACAPW--LGYAALETKLGDSDRARALYNL 493
Query: 648 AHCSQICD-PRVTAGFWAAWKSFE 670
A I + P + W A+ FE
Sbjct: 494 AVNQPILETPELV---WKAYIDFE 514
Score = 74 (31.1 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 26/100 (26%), Positives = 51/100 (51%)
Query: 350 NPHNVLEWHKRVRLFDGK-PLDIIR-TYTEAVKTVDP---KLAVGKLHTLWIEFGKFYEV 404
+P++ W ++L + ++ IR TY +A+ V K A + +W+ + F E+
Sbjct: 315 SPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNYCLFEEI 374
Query: 405 N-DQLEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
+ ++ AR ++ +A L+P+ K A +W +A ELR
Sbjct: 375 DVKDVDRARKVYQEALKLIPHKKFT-FAKLWLMYAMFELR 413
Score = 66 (28.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 44/227 (19%), Positives = 84/227 (37%)
Query: 479 KSIKLWSLYADLEESFGTFKAYEKGIA---------LFK-WPYIFDIWNTYLTKFLSRYG 528
KS++L+ Y E+ FG E + L K PY +D W L L
Sbjct: 275 KSMELYKEYTHFEKQFGDHLGVESTVLDKRRLQYEKLLKDSPYDYDTWLDLLK--LEESA 332
Query: 529 GTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARH--------AMAVYERATG 580
G + R+ +E+ + P + L A VY+ A
Sbjct: 333 GD-INTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNYCLFEEIDVKDVDRARKVYQEAL- 390
Query: 581 AVLPEEMFEMFNIYIKKAAEIYGIPKTR-QIYERAI-ESLPEEPTRQMCLKFAEMETKLG 638
++P + F +++ A ++ + + + + + + +L P ++ + E E +
Sbjct: 391 KLIPHKKFTFAKLWLMYA--MFELRQRKIDVARKTLGRALGMCPKPKLFRGYIEFEDAIK 448
Query: 639 EIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRI 685
+ DR R +Y + DP A W + + E G+ D R + +
Sbjct: 449 QFDRCRILYEKWI-LYDPEACAP-WLGYAALETKLGDSDRARALYNL 493
Score = 64 (27.6 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 606 KTRQIYERAIESLPEEPTRQMCLK-FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWA 664
+ R +Y A+ P T ++ K + + E + E +AR+IY + P V W
Sbjct: 486 RARALYNLAVNQ-PILETPELVWKAYIDFEFEEMEYGKARSIYQQLLRTA-PHVKV--WI 541
Query: 665 AWKSFEITHGNED 677
++ +FEI H +D
Sbjct: 542 SFANFEIAHLEDD 554
Score = 63 (27.2 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 642 RARAIY----AHCSQ--ICDPRVTAGFWAAWKSFEITHGNEDTMREM 682
RAR ++ AH Q + + RV AWK FE HG EDT + +
Sbjct: 571 RARNVFENALAHLRQQGLKEERVV--LLEAWKQFEAMHGTEDTRKHV 615
Score = 56 (24.8 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 39/175 (22%), Positives = 66/175 (37%)
Query: 466 YHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK--GIALFKWPYIFDIWNTYLTKF 523
Y + + + + + KLW +YA E K G AL P ++ Y+ +F
Sbjct: 386 YQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARKTLGRALGMCPKP-KLFRGYI-EF 443
Query: 524 LSRYGGTKLERARDLFEQCL----EACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERAT 579
+ +R R L+E+ + EAC P G + A A+Y A
Sbjct: 444 EDAI--KQFDRCRILYEKWILYDPEACAPWLGYAALETKL------GDSDRARALYNLAV 495
Query: 580 GAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEME 634
+ E ++ YI E K R IY++ + + P ++ + FA E
Sbjct: 496 NQPILETPELVWKAYIDFEFEEMEYGKARSIYQQLLRTAPHV---KVWISFANFE 547
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 141 (54.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 63/270 (23%), Positives = 116/270 (42%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH--KMPRIWL 110
YE LKE +Y +W+++ +L + + + D YE S H + +W+
Sbjct: 310 YEEQLKENLRNYDVWFDFARLEEQSGDPERVRDV-YERAIAQIPPSQEKRHWRRYIYLWI 368
Query: 111 DYGRFL-MDQHKITQTRHVFDRALRALPITQHH--RVWPLYLSFVKSHAVPETAVRVFRR 167
Y + M+ I + R V+ L+ +P + +VW + F + A + +
Sbjct: 369 FYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQ 428
Query: 168 YLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQN 227
+ + P+D + + Y+ +L E V+ + K+ + SN Q W + E+
Sbjct: 429 AIGMCPKD-KLFRGYIDLERQLFEF-VRCRTLYEKQI---EWNPSNSQSWIQYAELERGL 483
Query: 228 PDKIRSLNVDAIIRGGLRRYTDQLGHL-WNSLADYYIRSGLFERARDIYEEAIQTVTTVR 286
D R+ AI G+ + T + L W + D+ G +ER R +YE +Q
Sbjct: 484 DDTERAR---AIYELGIDQPTLDMPELVWKAYIDFEDDEGEYERERQLYERLLQKT---- 536
Query: 287 DFTQVFDAYAQFEELSLNKRMEEIAENDTP 316
D +V+ YA+FE +++ EE E + P
Sbjct: 537 DHVKVWINYARFE-INVPDEEEEEEEEERP 565
Score = 124 (48.7 bits), Expect = 0.00038, P = 0.00038
Identities = 44/163 (26%), Positives = 73/163 (44%)
Query: 526 RYGGTKLE-----RARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATG 580
RY +LE RAR +FE+ L+ + HA + +RA
Sbjct: 77 RYAAWELEQKEFRRARSIFERALDV--DSTSVPLWIRYIESEMRNRNINHARNLLDRAV- 133
Query: 581 AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEI 640
+LP + +++ Y+ + IP TRQ++ER + P+E +K +E + E
Sbjct: 134 TILPR-VDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGAWSAYIK---LEKRYNEF 189
Query: 641 DRARAIYAHCSQIC-DPRVTAGFWAAWKSFEITHGNEDTMREM 682
+RARAI+ + + +PR W W FE +G D +RE+
Sbjct: 190 ERARAIFQRFTIVHPEPRN----WIKWARFEEEYGTSDLVREV 228
Score = 122 (48.0 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 81/350 (23%), Positives = 139/350 (39%)
Query: 351 PHNVLEWHKRVRLFDGKPLDIIR-TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409
P N ++W + + D++R Y AV+T+ KL +I + +F + E
Sbjct: 206 PRNWIKWARFEEEYGTS--DLVREVYGLAVETLGEDFMDEKL---FIAYARFETKLKEYE 260
Query: 410 DARLIFDKAT-LVPYTKVEDLATVWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHD 468
AR I+ A +P +K T+ + E + G E Y +
Sbjct: 261 RARAIYKYALDRLPRSKS---ITLHKAYTTFEKQFGDREGVENVILAKRRVQ-----YEE 312
Query: 469 EAETVQARVYKSIKLWSLYADLEESFGTFK----AYEKGIALFK-------WP-YIFDIW 516
+ + R Y +W +A LEE G + YE+ IA W YI+ +W
Sbjct: 313 QLKE-NLRNYD---VWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIY-LW 367
Query: 517 NTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXX-XXXXXXXXHGL-ARHAMAV 574
Y ++RAR ++ +CL+ P + L + A
Sbjct: 368 IFYA--LWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKT 425
Query: 575 YERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEME 634
+A G + P++ ++F YI +++ + R +YE+ IE P Q +++AE+E
Sbjct: 426 LGQAIG-MCPKD--KLFRGYIDLERQLFEFVRCRTLYEKQIEWNPSNS--QSWIQYAELE 480
Query: 635 TKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDTMREM 682
L + +RARAIY I P + W A+ FE G + R++
Sbjct: 481 RGLDDTERARAIYE--LGIDQPTLDMPELVWKAYIDFEDDEGEYERERQL 528
Score = 120 (47.3 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 37/158 (23%), Positives = 71/158 (44%)
Query: 20 YEEEILRNPFSVKHWLRYIE---HKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRK 76
+E+ + RN ++ +W+RY +K +A +I+ER+L S LW Y++
Sbjct: 61 FEDYVRRNRINMNNWMRYAAWELEQKEFRRA--RSIFERALDVDSTSVPLWIRYIE---S 115
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136
+++ + I N +R++ + ++ ++W Y I TR VF+R +
Sbjct: 116 EMRNRNINH-----ARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWE 170
Query: 137 PITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174
P W Y+ K + E A +F+R+ + PE
Sbjct: 171 P---DEGAWSAYIKLEKRYNEFERARAIFQRFTIVHPE 205
Score = 116 (45.9 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 42/131 (32%), Positives = 66/131 (50%)
Query: 571 AMAVYERATGAVLPEEMFEMFNIYIKKAA--EIYGIPK-TRQIYERAIESLPEE-PTRQM 626
A A+++R T V PE N +IK A E YG R++Y A+E+L E+ ++
Sbjct: 192 ARAIFQRFT-IVHPEPR----N-WIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEKL 245
Query: 627 CLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIK 686
+ +A ETKL E +RARAIY + + A+ +FE G+ + + ++ K
Sbjct: 246 FIAYARFETKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAK 305
Query: 687 RSVQAQYNTQV 697
R VQ Y Q+
Sbjct: 306 RRVQ--YEEQL 314
Score = 108 (43.1 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 51/216 (23%), Positives = 96/216 (44%)
Query: 88 YEDVNNTFERSL-VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWP 146
+ + FER+L V +P +W+ Y M I R++ DRA+ LP ++W
Sbjct: 88 FRRARSIFERALDVDSTSVP-LWIRYIESEMRNRNINHARNLLDRAVTILPRVD--KLWY 144
Query: 147 LYLSFVKSHA-VPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESF 205
Y+ ++ +P T +VF R++ P++ + Y+ +R +E A + F
Sbjct: 145 KYVYMEETLGNIPGTR-QVFERWMSWEPDEGA-WSAYIKLEKRYNEFERARAIF---QRF 199
Query: 206 VSKHGKSNHQL-WNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIR 264
H + + + W E + D +R + A+ G + D+ L+ + A + +
Sbjct: 200 TIVHPEPRNWIKWARFEEEYGTS-DLVREVYGLAVETLG-EDFMDE--KLFIAYARFETK 255
Query: 265 SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
+ERAR IY+ A+ + + T + AY FE+
Sbjct: 256 LKEYERARAIYKYALDRLPRSKSIT-LHKAYTTFEK 290
Score = 65 (27.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 26/99 (26%), Positives = 41/99 (41%)
Query: 606 KTRQIYERAIESLPEEPTRQMCLK-FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWA 664
+ R IYE I+ P ++ K + + E GE +R R +Y Q D V W
Sbjct: 488 RARAIYELGIDQ-PTLDMPELVWKAYIDFEDDEGEYERERQLYERLLQKTD-HVKV--WI 543
Query: 665 AWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLFTFLH 703
+ FEI +E+ E S +A+ + +F H
Sbjct: 544 NYARFEINVPDEEEEEEEEERPISDEAKRRARAVFERAH 582
Score = 52 (23.4 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 25/99 (25%), Positives = 40/99 (40%)
Query: 350 NPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVD-PKLAVGKLHTLWIEFGKFYEVNDQL 408
NP N W + L G D R +D P L + +L +W + F + +
Sbjct: 466 NPSNSQSWIQYAELERGLD-DTERARAIYELGIDQPTLDMPEL--VWKAYIDFEDDEGEY 522
Query: 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEE 447
E R ++++ L+ T D VW +A E+ EE
Sbjct: 523 ERERQLYER--LLQKT---DHVKVWINYARFEINVPDEE 556
Score = 51 (23.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 642 RARAIY--AHC----SQICDPRVTAGFWAAWKSFEITHGN-EDTMREMLRIKRSVQ 690
RARA++ AH ++ + RV AW++FE THG+ ED + ++ R V+
Sbjct: 573 RARAVFERAHRVFKEKELKEERVE--LLNAWRAFEHTHGSPEDIDKIEKQMPRRVK 626
Score = 47 (21.6 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTT 284
W A + + F RAR I+E A+ +T
Sbjct: 75 WMRYAAWELEQKEFRRARSIFERALDVDST 104
Score = 46 (21.3 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKA-TLVPYTKVEDLATVWCEWAELELRAG 444
LWI + + N + AR + D+A T++P +V+ L W ++ +E G
Sbjct: 108 LWIRYIESEMRNRNINHARNLLDRAVTILP--RVDKL---WYKYVYMEETLG 154
Score = 40 (19.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 569 RHAMAVYERATGAV----LPEEMFEMFNIYIKKAAEIYGIPK 606
R A AV+ERA L EE E+ N + + +G P+
Sbjct: 572 RRARAVFERAHRVFKEKELKEERVELLNAW-RAFEHTHGSPE 612
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 125 (49.1 bits), Expect = 0.00029, P = 0.00029
Identities = 40/130 (30%), Positives = 67/130 (51%)
Query: 571 AMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630
A V++RA ++LP + +++ +I ++ I RQI ER I P++ Q L F
Sbjct: 110 ARNVWDRAV-SLLPR-VDQLWYKFIHMEEKLGNIAGARQILERWIHCSPDQ---QAWLCF 164
Query: 631 AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN-EDTMREMLRIKRSV 689
+ E K EI+ AR+IY +C P+V+A + + FE+ HG E M+ R K+ +
Sbjct: 165 IKFELKYNEIECARSIYERFV-LCHPKVSA--YIRYAKFEMKHGQVELAMKVFERAKKEL 221
Query: 690 QAQYNTQVLF 699
++LF
Sbjct: 222 ADDEEAEILF 231
Score = 121 (47.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 40/172 (23%), Positives = 80/172 (46%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
+E++I R + + W++Y + + KN +++R++ LP +LWY ++ + K
Sbjct: 80 FEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKL- 138
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMP--RIWLDYGRFLMDQHKITQTRHVFDRALRAL 136
G + ER ++H P + WL + +F + ++I R +++R +
Sbjct: 139 -GNIA------GARQILER---WIHCSPDQQAWLCFIKFELKYNEIECARSIYERFVLCH 188
Query: 137 P-ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIE 187
P ++ + R Y F H E A++VF R K +D E I +++ E
Sbjct: 189 PKVSAYIR----YAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAE 236
Score = 114 (45.2 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 78/343 (22%), Positives = 137/343 (39%)
Query: 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSF-VKSHAVPETAVRVFRRYLKLFPED 175
+ +++ + + D+ RA TQ VW Y F +K+ +V E A V+ R + L P
Sbjct: 69 LSDYRLRRRKEFEDQIRRARLNTQ---VWVKYADFEMKNKSVNE-ARNVWDRAVSLLPRV 124
Query: 176 AEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLN 235
+ + +++ E+L A + E ++ H + Q W LC + + ++
Sbjct: 125 DQLWYKFIHMEEKLGNIAGARQIL---ERWI--HCSPDQQAW--LCFIKFE----LKYNE 173
Query: 236 VDAIIRGGLRRYTDQLGH----LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQV 291
++ R R+ L H + A + ++ G E A ++E A + + + +
Sbjct: 174 IECA-RSIYERFV--LCHPKVSAYIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEIL 230
Query: 292 FDAYAQFEE---LSLNKRMEEIAENDTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 348
F A+A+FEE +L++ + AEN
Sbjct: 231 FVAFAEFEEQYKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVR 290
Query: 349 QNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHT-----LWIEFGKF 401
+NP N W VRL + G I Y AV V P A K + LWI + F
Sbjct: 291 KNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFF 350
Query: 402 YE-VNDQLEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELR 442
E V + +E R ++ L+P++K A +W A+ E+R
Sbjct: 351 AEMVTEDVESTRDVYRACLKLIPHSKFS-FAKIWLLAAQHEIR 392
Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 43/178 (24%), Positives = 72/178 (40%)
Query: 509 WP-YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGL 567
W YI+ +W Y F + +E RD++ CL+ P H +
Sbjct: 337 WQRYIY-LWINYA--FFAEMVTEDVESTRDVYRACLKLIP--HSKFSFAKIWLLAAQHEI 391
Query: 568 ARHAMAVYERATG-AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQM 626
+ + + G A+ ++F YI+ ++ I + R++YER +E P
Sbjct: 392 RQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWR 451
Query: 627 CLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAAWKSFEITHGNEDTMREM 682
K+AE E L E +R RAI+ I P + W + FEI+ G + R +
Sbjct: 452 --KYAEFEMSLAETERTRAIFELA--ISQPALDMPELLWKTYIDFEISEGELERTRAL 505
Score = 86 (35.3 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 49/208 (23%), Positives = 83/208 (39%)
Query: 508 KWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGL 567
K P +D W ++ L G K +R R+++E+ + PP
Sbjct: 291 KNPLNYDSWFDFVR--LEETVGNK-DRIREIYERAVANVPPPEAQEKRYWQRYIYLWINY 347
Query: 568 ARHAMAVYE---------RATGAVLPEEMFEMFNIYIKKAA-EIYGIPKT--RQIYERAI 615
A A V E RA ++P F I++ A EI + T RQI AI
Sbjct: 348 AFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAI 407
Query: 616 ESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN 675
P++ ++ K+ E+E +L IDR R +Y + A W + FE++
Sbjct: 408 GKAPKD---KIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYA--WRKYAEFEMSLAE 462
Query: 676 EDTMREMLRIKRSVQAQYNTQVLF-TFL 702
+ R + + S A ++L+ T++
Sbjct: 463 TERTRAIFELAISQPALDMPELLWKTYI 490
Score = 73 (30.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/105 (21%), Positives = 50/105 (47%)
Query: 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFR 166
++W+ Y F M + + R+V+DRA+ LP ++W ++ + A ++
Sbjct: 92 QVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVD--QLWYKFIHMEEKLGNIAGARQILE 149
Query: 167 RYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGK 211
R++ P D + ++ ++ + +E ++ A + E FV H K
Sbjct: 150 RWIHCSP-DQQAWLCFIKFELKYNE--IECARSIY-ERFVLCHPK 190
Score = 67 (28.6 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 606 KTRQIYERAIESLPEEPTRQMCLK-FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWA 664
+TR I+E AI S P ++ K + + E GE++R RA+Y ++ D W
Sbjct: 465 RTRAIFELAI-SQPALDMPELLWKTYIDFEISEGELERTRALY---ERLLDRTKHCKVWV 520
Query: 665 AWKSFEIT---HGNEDTMREMLRIKR 687
+ FE + H ++ + + K+
Sbjct: 521 DFAKFEASAAEHKEDEEEEDAIERKK 546
Score = 56 (24.8 bits), Expect = 4.7e-06, Sum P(3) = 4.7e-06
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 603 GIPKTRQIYERAI----ESLPE-EPTRQMCLK-FAEMETKLGEIDRARAI 646
GI + R+I++RA +S PE + R M L+ + MET G++ R +
Sbjct: 548 GIKRAREIFDRANTYNKDSTPELKEERAMLLEDWLNMETGFGKLGDVRVV 597
Score = 54 (24.1 bits), Expect = 4.7e-06, Sum P(3) = 4.7e-06
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 484 WSLYADLEESFG----TFKAYEKGIA--LFKWPYIFDIWNTYLTKFLSRYGGTKLERARD 537
W YA+ E S T +E I+ P + +W TY+ +S G +LER R
Sbjct: 450 WRKYAEFEMSLAETERTRAIFELAISQPALDMPEL--LWKTYIDFEISE--G-ELERTRA 504
Query: 538 LFEQCLE 544
L+E+ L+
Sbjct: 505 LYERLLD 511
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEE 447
W ++ +F + E R IF+ A P + +L +W + + E+ G+ E
Sbjct: 450 WRKYAEFEMSLAETERTRAIFELAISQPALDMPEL--LWKTYIDFEISEGELE 500
>CGD|CAL0004743 [details] [associations]
symbol:orf19.332 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IEA] [GO:0071008 "U2-type
post-mRNA release spliceosomal complex" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0000974 "Prp19 complex" evidence=IEA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 EMBL:AACQ01000027
EMBL:AACQ01000026 RefSeq:XP_720027.1 RefSeq:XP_720159.1
ProteinModelPortal:Q5AED6 STRING:Q5AED6 GeneID:3638214
GeneID:3638364 KEGG:cal:CaO19.332 KEGG:cal:CaO19.7964
eggNOG:NOG327505 KO:K12869 Uniprot:Q5AED6
Length = 758
Score = 128 (50.1 bits), Expect = 7.2e-09, Sum P(3) = 7.2e-09
Identities = 46/200 (23%), Positives = 84/200 (42%)
Query: 20 YEEEILRNPFSVKHWLRY----IEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRR 75
+E+ I +N ++ W RY IE+ + P+A +I ER+L W Y++L
Sbjct: 109 FEQHINKNRLNLGQWTRYAKWEIENNHDFPRA--RSILERALDVNIQHVPFWIQYIQLE- 165
Query: 76 KQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA 135
++ + N ER++ + ++ ++W Y + R VF+R L
Sbjct: 166 -------LSHKNINHARNLMERAINTLPRVNKLWFLYVQTEEMLKNYPMVRAVFERWLDW 218
Query: 136 LPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY--IEYLSSIERLDEAA 193
P T VW Y++F + E +F++Y+ FP Y I+Y R D
Sbjct: 219 HPDTS---VWDAYINFEARYEEKENVRTIFKKYVHEFPNAGTWYKWIKYEMENNRDDVNT 275
Query: 194 VKLAYIVNKESFVSKHGKSN 213
V+ + ++ +S + N
Sbjct: 276 VRAVFESAVDTLLSNKSEEN 295
Score = 99 (39.9 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 52/246 (21%), Positives = 105/246 (42%)
Query: 76 KQVKGKVITDPSYEDVNNTFERSL-VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
+ K ++ + + + ER+L V + +P W+ Y + + I R++ +RA+
Sbjct: 125 RYAKWEIENNHDFPRARSILERALDVNIQHVP-FWIQYIQLELSHKNINHARNLMERAIN 183
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVR-VFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
LP + +++W LY+ + VR VF R+L P D + Y++ R +E
Sbjct: 184 TLP--RVNKLWFLYVQ-TEEMLKNYPMVRAVFERWLDWHP-DTSVWDAYINFEARYEEKE 239
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEM-ISQNPDKIRSLN------VDAIIRGGLRR 246
+ I K +V H N W + + + N D + ++ VD ++
Sbjct: 240 -NVRTIFKK--YV--HEFPNAGTWYKWIKYEMENNRDDVNTVRAVFESAVDTLLSNKSEE 294
Query: 247 YTD--QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTT---VRDFTQ--VFDAYAQFE 299
D + + +S + + G RA +I++ + T + D T+ ++ A+ +FE
Sbjct: 295 NDDDEEFATIISSWTSWEVSCGEASRANEIFKLLLDNKTNKLEISDKTKSSIYTAFVEFE 354
Query: 300 ELSLNK 305
+ NK
Sbjct: 355 KNFGNK 360
Score = 91 (37.1 bits), Expect = 7.2e-09, Sum P(3) = 7.2e-09
Identities = 39/187 (20%), Positives = 78/187 (41%)
Query: 488 ADLEESFGTFKA---YEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544
+DLE +F ++K ++ KW W Y F + AR+++ CL+
Sbjct: 403 SDLENAFKKVTGNVVHDKHKSI-KWRRYIMFWIWYA--FWEEMTNNNPDSAREIWNNCLK 459
Query: 545 ACPPRXXXXXX-----XXXXXXXXXHGLARHAMAVYERATGAV-LPEEMFEMFNIYIKKA 598
P + GLA+ A + RA G + + ++F YI
Sbjct: 460 VIPHKSFTFAKVWIGYSEFELRNSEDGLAK-ARKILGRAIGQTSINKPKIKIFKYYIDLE 518
Query: 599 AEIYGIPKTRQIYERAIE-SLPEEPTRQMCL-KFAEMETKLGEIDRARAIYAHCSQICD- 655
++ + R ++++ +E SL + ++ + K+ E E+ + E DR +I + Q+ +
Sbjct: 519 KKLGDWNRVRLLFQKWLEVSLLTTSSSELVIEKYVEFESSIEEYDRCDSILSSARQLSEN 578
Query: 656 PRVTAGF 662
P ++ F
Sbjct: 579 PEYSSSF 585
Score = 91 (37.1 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 36/133 (27%), Positives = 56/133 (42%)
Query: 13 ENEEDLPYEEEILRNPFSV--KH---WLRYIEHK---KNAPKAIINTIYERSLKELPGSY 64
EN D P IL V +H W++YI+ + KN A + ER++ LP
Sbjct: 132 ENNHDFPRARSILERALDVNIQHVPFWIQYIQLELSHKNINHA--RNLMERAINTLPRVN 189
Query: 65 KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQ 124
KLW+ Y++ + +K +Y V FER L + H +W Y F +
Sbjct: 190 KLWFLYVQTE-EMLK-------NYPMVRAVFERWLDW-HPDTSVWDAYINFEARYEEKEN 240
Query: 125 TRHVFDRALRALP 137
R +F + + P
Sbjct: 241 VRTIFKKYVHEFP 253
Score = 63 (27.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 23/105 (21%), Positives = 46/105 (43%)
Query: 608 RQIYERAIESL---------PEEPTRQMCLKFAEMETKLGEIDRARAIY-------AHCS 651
R ++E A+++L +E + + E GE RA I+ +
Sbjct: 277 RAVFESAVDTLLSNKSEENDDDEEFATIISSWTSWEVSCGEASRANEIFKLLLDNKTNKL 336
Query: 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQ 696
+I D + + + A+ FE GN+D++ + + IKR ++ + Q
Sbjct: 337 EISD-KTKSSIYTAFVEFEKNFGNKDSIEQSVLIKRRIKYEQEIQ 380
Score = 58 (25.5 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 395 WIEFGKFYEV-NDQLEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELRAGQE 446
WI + + E+ N+ + AR I++ ++P+ K A VW ++E ELR ++
Sbjct: 433 WIWYAFWEEMTNNNPDSAREIWNNCLKVIPH-KSFTFAKVWIGYSEFELRNSED 485
Score = 46 (21.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 662 FWAAWKSF--EITHGNEDTMREM 682
FW W +F E+T+ N D+ RE+
Sbjct: 432 FWI-WYAFWEEMTNNNPDSAREI 453
Score = 42 (19.8 bits), Expect = 7.2e-09, Sum P(3) = 7.2e-09
Identities = 5/20 (25%), Positives = 15/20 (75%)
Query: 665 AWKSFEITHGNEDTMREMLR 684
AW+ FE +G+++++ ++ +
Sbjct: 689 AWRDFEEVNGSDESLSKVTK 708
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 142 (55.0 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 78/317 (24%), Positives = 128/317 (40%)
Query: 380 KTVDPKLAVGK-LHTLWIEFGKFYEVNDQLEDARLIFDKAT-LVPYTKVEDLATVWCEWA 437
+ VD KLA + L++ F +F E ++E AR I+ A + + E+L + ++
Sbjct: 238 RAVD-KLANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEEL---YKKFV 293
Query: 438 ELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497
E + G +E Y DE Y S W Y LEES G
Sbjct: 294 AFEKQYGDKEGIEDAIVGKKRFE-----YEDEVSKNPLN-YDS---WFDYVRLEESVGNK 344
Query: 498 ----KAYEKGIALFKWPYIFDIWNTYLTKFLSR--YGG--TK-LERARDLFEQCLEACPP 548
+ YE+ IA W Y+ +++ Y TK +ER RD++ +CL+ P
Sbjct: 345 DRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKDVERTRDVYRECLKLIP- 403
Query: 549 RXXXXXXXXXXXXXXXHGLARHAMAVYERATG-AVLPEEMFEMFNIYIKKAAEIYGIPKT 607
+ + + + + G A+ ++F YI+ ++ I +
Sbjct: 404 -HTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVKIFKKYIEMELKLVNIDRC 462
Query: 608 RQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAG--FWAA 665
R++YER +E PE +AE E L E +RARAI+ I P + W
Sbjct: 463 RKLYERFLEWSPENCYAWR--NYAEFEISLAETERARAIFELA--ISQPALDMPELLWKT 518
Query: 666 WKSFEITHGNEDTMREM 682
+ FEI+ G + R +
Sbjct: 519 YIDFEISEGEFEKTRAL 535
Score = 128 (50.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 61/305 (20%), Positives = 130/305 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPK-AIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
+E++I R ++++ W++Y + +++ A +++ER+L+ ++ LW Y + ++
Sbjct: 67 FEDQIRRARWNIQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEF---EM 123
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH--KITQTRHVFDRALRAL 136
K K + + N ++RS+ + ++ ++W Y M++ +T R +F+R +
Sbjct: 124 KNKFVNN-----ARNVWDRSVTLLPRVDQLWEKY--IYMEEKLGNVTGARQIFERWMNWS 176
Query: 137 PITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKL 196
P + W ++ F + E A ++ R++ P+ +I Y + E VKL
Sbjct: 177 P---DQKAWLCFIKFELRYNEIERARSIYERFVLCHPK-VSAFIRY-AKFEMKRGGQVKL 231
Query: 197 AYIVNKESFVSKHGKSNHQL-------WNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249
A V + + ++ + E C+ + + I +D I +G
Sbjct: 232 AREVYERAVDKLANDEEAEILFVSFAEFEERCKEV-ERARFIYKFALDHIRKGRAEELYK 290
Query: 250 QLGHLWNSLADYY-IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNK-RM 307
+ D I + + R YE+ + ++ FD Y + EE NK R+
Sbjct: 291 KFVAFEKQYGDKEGIEDAIVGKKRFEYEDEVSK--NPLNYDSWFD-YVRLEESVGNKDRI 347
Query: 308 EEIAE 312
EI E
Sbjct: 348 REIYE 352
Score = 122 (48.0 bits), Expect = 0.00063, P = 0.00063
Identities = 51/226 (22%), Positives = 96/226 (42%)
Query: 478 YKSIKLWSLYADLE--ESF--GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLE 533
Y++ LW YA+ E F +++ + L P + +W Y+ ++ G +
Sbjct: 109 YRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLL--PRVDQLWEKYI--YMEEKLGN-VT 163
Query: 534 RARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVLPEEMFEMFNI 593
AR +FE+ + P + + A ++YER VL F
Sbjct: 164 GARQIFERWMNWSPDQKAWLCFIKFELR---YNEIERARSIYERF---VLCHPKVSAFIR 217
Query: 594 YIKKAAEIYGIPK-TRQIYERAIESLP-EEPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651
Y K + G K R++YERA++ L +E + + FAE E + E++RAR IY
Sbjct: 218 YAKFEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFAL 277
Query: 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + +FE +G+++ + + + K+ + +Y +V
Sbjct: 278 DHIRKGRAEELYKKFVAFEKQYGDKEGIEDAIVGKK--RFEYEDEV 321
Score = 119 (46.9 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 38/183 (20%), Positives = 77/183 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAP-KAIINTIYERSLKELPGSY--KLWYNYLKLRRK 76
YE+E+ +NP + W Y+ +++ K I IYER++ +P + + W Y+ L
Sbjct: 317 YEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWIN 376
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFM-H---KMPRIWLDYGRFLMDQHKITQTRHVFDRA 132
+ I E + + L + H +IWL + + Q +T R + A
Sbjct: 377 YALYEEIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNA 436
Query: 133 LRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA---EDYIEYLSSIERL 189
+ P +++ Y+ + +++ R+L+ PE+ +Y E+ S+
Sbjct: 437 IGKAPKV---KIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAET 493
Query: 190 DEA 192
+ A
Sbjct: 494 ERA 496
Score = 114 (45.2 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 71/288 (24%), Positives = 123/288 (42%)
Query: 34 WLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92
W++Y E + KN +++RS+ LP +LW Y+ + K G V
Sbjct: 115 WVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKL--GNVT------GAR 166
Query: 93 NTFERSLVFMHKMP--RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLS 150
FER +M+ P + WL + +F + ++I + R +++R + P + Y
Sbjct: 167 QIFER---WMNWSPDQKAWLCFIKFELRYNEIERARSIYERFVLCHPKVS---AFIRYAK 220
Query: 151 F-VKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA-VKLAYIVNKESFVSK 208
F +K + A V+ R + D E I ++S E + V+ A + K F
Sbjct: 221 FEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYK--FALD 278
Query: 209 HGKSNH--QLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL---WNSLADYYI 263
H + +L+ + Q DK + DAI+ Y D++ ++S DY +
Sbjct: 279 HIRKGRAEELYKKFVAFEKQYGDK-EGIE-DAIVGKKRFEYEDEVSKNPLNYDSWFDY-V 335
Query: 264 RS----GLFERARDIYEEAIQTVTTVRD--FTQ----VFDAYAQFEEL 301
R G +R R+IYE AI V ++ F Q ++ YA +EE+
Sbjct: 336 RLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEI 383
Score = 111 (44.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 61/266 (22%), Positives = 112/266 (42%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDV--NNTFERSLVFMHKMPRIWL 110
YE + + P +Y W++Y++L + V K YE N + F + +W+
Sbjct: 317 YEDEVSKNPLNYDSWFDYVRLE-ESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWI 375
Query: 111 DYGRFLMDQHK-ITQTRHVFDRALRALPITQHH--RVWPLYLSFVKSHAVPETAVRVFRR 167
+Y + + K + +TR V+ L+ +P T+ ++W L + A ++
Sbjct: 376 NYALYEEIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGN 435
Query: 168 YLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEM-I 224
+ P+ + YIE + +D KL Y E F+ + N W E I
Sbjct: 436 AIGKAPKVKIFKKYIEMELKLVNIDRCR-KL-Y----ERFL-EWSPENCYAWRNYAEFEI 488
Query: 225 S-QNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283
S ++ R++ AI + L D LW + D+ I G FE+ R +YE +
Sbjct: 489 SLAETERARAIFELAISQPAL----DMPELLWKTYIDFEISEGEFEKTRALYERLLDRTK 544
Query: 284 TVRDFTQVFDAYAQFEELSLNKRMEE 309
+ V+ ++A+FE S ++ E+
Sbjct: 545 HCK----VWISFAKFEA-SASEHKED 565
Score = 64 (27.6 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 41/189 (21%), Positives = 69/189 (36%)
Query: 466 YHDEAETVQARVYKSIKLWSLYADLE-ESFGTFKAYE-KGIALFKWPYIFDIWNTYLTKF 523
Y + + + + K+W L A+ E A + G A+ K P + I+ Y+
Sbjct: 395 YRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKV-KIFKKYIEME 453
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
L ++R R L+E+ LE P A A++E A
Sbjct: 454 LKL---VNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAE--TERARAIFELAISQPA 508
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGE---- 639
+ ++ YI KTR +YER ++ ++ + FA+ E E
Sbjct: 509 LDMPELLWKTYIDFEISEGEFEKTRALYERLLDRTKH---CKVWISFAKFEASASEHKED 565
Query: 640 -IDRARAIY 647
I AR I+
Sbjct: 566 GIKSARVIF 574
Score = 62 (26.9 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK-FAEMETKLGEIDR 642
PE + N Y + + + R I+E AI S P ++ K + + E GE ++
Sbjct: 474 PENCYAWRN-YAEFEISLAETERARAIFELAI-SQPALDMPELLWKTYIDFEISEGEFEK 531
Query: 643 ARAIYAHCSQICDPRVTAGFWAAWKSFE 670
RA+Y ++ D W ++ FE
Sbjct: 532 TRALY---ERLLDRTKHCKVWISFAKFE 556
Score = 61 (26.5 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 394 LWIEFGKFY-EVNDQLED----ARLIFDKA-TLVPYTKVE---DLATVWCEWAELELRAG 444
+WI F KF ++ ED AR+IFD+A T T E + AT+ +W +E G
Sbjct: 548 VWISFAKFEASASEHKEDGIKSARVIFDRANTYYKDTTPELEEERATLLEDWLNMETGFG 607
Query: 445 Q 445
+
Sbjct: 608 E 608
>TAIR|locus:2007973 [details] [associations]
symbol:CSTF77 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031123 "RNA 3'-end processing"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF05843 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00386 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0045892 GO:GO:0003729 GO:GO:0006397 Gene3D:1.25.40.10
eggNOG:COG5107 KO:K14408 GO:GO:0031123 UniGene:At.27878
UniGene:At.28561 EMBL:BT002320 IPI:IPI00548656 RefSeq:NP_173218.2
SMR:Q8GUP1 IntAct:Q8GUP1 STRING:Q8GUP1 EnsemblPlants:AT1G17760.1
GeneID:838354 KEGG:ath:AT1G17760 TAIR:At1g17760
HOGENOM:HOG000030800 InParanoid:Q8GUP1 OMA:FEQTYGD
ProtClustDB:CLSN2690404 Genevestigator:Q8GUP1 Uniprot:Q8GUP1
Length = 734
Score = 123 (48.4 bits), Expect = 0.00055, P = 0.00055
Identities = 51/236 (21%), Positives = 101/236 (42%)
Query: 67 WYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTR 126
W +L + + ++ T S + + +E+ L+ ++ P +W DY + +
Sbjct: 228 WKKFLSFEKGNPQ-RIDTASSTKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAAI 286
Query: 127 HVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSI 186
VF RAL+A+P ++ + + +S ++A +++ L +I+YL +
Sbjct: 287 KVFQRALKAIPDSEMLKY--AFAEMEESRGAIQSAKKLYENILGASTNSLA-HIQYLRFL 343
Query: 187 ERLD--EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244
R + EAA K K + H + + + I + P K+ N I GL
Sbjct: 344 RRAEGVEAARKYFLDARKSPSCTYHV---YIAFATMAFCIDKEP-KVAH-N---IFEEGL 395
Query: 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
+ Y + ++ AD+ R R ++E A+ T+ V D +V+ + QFE+
Sbjct: 396 KLYMSEPVYILK-YADFLTRLNDDRNIRALFERALSTLP-VEDSAEVWKRFIQFEQ 449
Score = 115 (45.5 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 69/299 (23%), Positives = 120/299 (40%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKK--NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQ 77
YE+ + P S + W +Y+E + N A I+ R L LW Y++ RK
Sbjct: 29 YEQLLSLYPTSARFWKQYVEAQMAVNNDDAT-KQIFSRCLLTCL-QVPLWQCYIRFIRK- 85
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHK---MPRIWLDYGRFLM---------DQHKITQT 125
V K + E+ FE L ++ IW +Y FL D H+ T
Sbjct: 86 VYDKKGAE-GQEETTKAFEFMLNYIGTDIASGPIWTEYIAFLKSLPALNLNEDLHRKTAL 144
Query: 126 RHVFDRALRALPITQH-HRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLS 184
R V+ RA+ L T H ++W Y +F ++ + A + Y F Y E
Sbjct: 145 RKVYHRAI--LTPTHHVEQLWKDYENF-ENTVNRQLAKGLVNEYQPKFNSARAVYRERKK 201
Query: 185 SIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244
IE +D + + + SK ++ W + NP +I + + I
Sbjct: 202 YIEEIDWNMLAVP-----PTGTSKE-ETQWVAWKKFLSFEKGNPQRIDTASSTKRIIYAY 255
Query: 245 RRYTDQLGH---LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300
+ L H +W A+++++SG + A +++ A++ + D + A+A+ EE
Sbjct: 256 EQCLMCLYHYPDVWYDYAEWHVKSGSTDAAIKVFQRALKAIP---DSEMLKYAFAEMEE 311
Score = 75 (31.5 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 24/104 (23%), Positives = 49/104 (47%)
Query: 591 FNIYIKKAAEIYGI---PKT-RQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAI 646
+++YI A + I PK I+E ++ EP LK+A+ T+L + RA+
Sbjct: 367 YHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYMSEPV--YILKYADFLTRLNDDRNIRAL 424
Query: 647 YAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690
+ +A W + FE T+G+ + +L++++ ++
Sbjct: 425 FERALSTLPVEDSAEVWKRFIQFEQTYGD---LASILKVEQRMK 465
Score = 64 (27.6 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 609 QIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
++++RA++++P+ + + FAEME G I A+ +Y
Sbjct: 287 KVFQRALKAIPD--SEMLKYAFAEMEESRGAIQSAKKLY 323
Score = 61 (26.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 36/177 (20%), Positives = 68/177 (38%)
Query: 468 DEAETVQARVYKSIK----LWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKF 523
D A V R K+I L +A++EES G ++ +K + + +F
Sbjct: 283 DAAIKVFQRALKAIPDSEMLKYAFAEMEESRGAIQSAKKLYENILGASTNSLAHIQYLRF 342
Query: 524 LSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYERATGAVL 583
L R G +E AR F ++ P + A ++E +
Sbjct: 343 LRRAEG--VEAARKYFLDARKS-PSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYM 399
Query: 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEI 640
E ++ + Y + R ++ERA+ +LP E + ++ +F + E G++
Sbjct: 400 SEPVYILK--YADFLTRLNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDL 454
>SGD|S000004107 [details] [associations]
symbol:CLF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0000785 "chromatin"
evidence=IDA] [GO:0000384 "first spliceosomal transesterification
activity" evidence=IC] [GO:0071007 "U2-type catalytic step 2
spliceosome" evidence=IDA] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0071008 "U2-type post-mRNA release spliceosomal
complex" evidence=IDA] [GO:0000974 "Prp19 complex" evidence=IDA]
[GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=IDA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IMP;IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006270 "DNA
replication initiation" evidence=IMP;IPI] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003688 "DNA replication
origin binding" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
SGD:S000004107 GO:GO:0000785 GO:GO:0003682 EMBL:BK006945
GO:GO:0003688 GO:GO:0007049 GO:GO:0006270 Gene3D:1.25.40.10
EMBL:X89514 EMBL:U53877 GO:GO:0000974 GO:GO:0071006
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
OrthoDB:EOG4NKG44 EMBL:Z73289 PIR:S64954 RefSeq:NP_013218.1
ProteinModelPortal:Q12309 SMR:Q12309 DIP:DIP-1685N IntAct:Q12309
MINT:MINT-385873 STRING:Q12309 PaxDb:Q12309 PRIDE:Q12309
EnsemblFungi:YLR117C GeneID:850808 KEGG:sce:YLR117C CYGD:YLR117c
GeneTree:ENSGT00550000074931 NextBio:967040 Genevestigator:Q12309
GermOnline:YLR117C GO:GO:0071007 GO:GO:0071008 GO:GO:0071004
GO:GO:0000354 Uniprot:Q12309
Length = 687
Score = 109 (43.4 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 53/197 (26%), Positives = 83/197 (42%)
Query: 469 EAETVQARVYKSIKLWSLYADL-EESFGT--FKAYEKGIA------LFK---WP-YIFDI 515
E ET+ + W LY DL ESF + +EK I L K W YI+ +
Sbjct: 308 EYETILSNNAYDYDTWWLYLDLISESFPKQIMQTFEKAIVDSRPKELSKNVQWKRYIY-L 366
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARH----- 570
W Y+ + LE +LF++ ++ P L RH
Sbjct: 367 WMRYICYVELELENSLLEE--ELFQRLIDDIIPHKHFTFSKIWLMYAKF--LIRHDDVPK 422
Query: 571 AMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630
A + +A G + P+ + F YI+ ++ + R+IYE+ IE P + Q+ ++
Sbjct: 423 ARKILGKAIG-LCPKA--KTFKGYIELEVKLKEFDRVRKIYEKFIEFQPSD--LQIWSQY 477
Query: 631 AEMETKLGEIDRARAIY 647
E+E LG+ DR R IY
Sbjct: 478 GELEENLGDWDRVRGIY 494
Score = 80 (33.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 41/183 (22%), Positives = 73/183 (39%)
Query: 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168
W+ Y +F ++QH + + R +F+RAL L + +W Y+ A + R
Sbjct: 68 WIRYAQFEIEQHDMRRARSIFERAL--LVDSSFIPLWIRYIDAELKVKCINHARNLMNRA 125
Query: 169 LKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNP 228
+ P + + +YL E L+ + + + K + S N WN +
Sbjct: 126 ISTLPRVDKLWYKYLIVEESLNNVEI-VRSLYTK--WCSLEPGVN--AWNSFVDF----- 175
Query: 229 DKIRSLNVDAIIRGGLRRYTDQLGH----LWNSLADYYIRSGLFERARDIYEEAIQTVTT 284
+IR N + + R +Y + H W + R G E R +Y AI TV
Sbjct: 176 -EIRQKNWNGV-REIYSKYV--MAHPQMQTWLKWVRFENRHGNTEFTRSVYSLAIDTVAN 231
Query: 285 VRD 287
+++
Sbjct: 232 LQN 234
Score = 80 (33.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 52/230 (22%), Positives = 98/230 (42%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
FER+L+ +W+ Y + I R++ +RA+ LP ++W YL +S
Sbjct: 88 FERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAISTLPRVD--KLWYKYLIVEES 145
Query: 155 HAVPETAVRVFRRYLKLFPE-DA-EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKS 212
E ++ ++ L P +A ++++ I + + V+ Y +V H +
Sbjct: 146 LNNVEIVRSLYTKWCSLEPGVNAWNSFVDF--EIRQKNWNGVREIY----SKYVMAHPQM 199
Query: 213 NHQL-WNELCEMISQNPDKIRS---LNVDAIIR-GGLRRYTD-QLGHLWNSLADYYIRSG 266
L W E N + RS L +D + L+ ++D ++ L NS A +
Sbjct: 200 QTWLKWVRF-ENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWEAAQQ 258
Query: 267 LFERARDIYEEAIQTVTT-------VRDFTQVFDAYAQFEE-LSLNKRME 308
+ER+ +Y+ AI+ + + DF + F EE +S ++ME
Sbjct: 259 EYERSSALYQIAIEKWPSNQLLKAGLLDFEKQFGDINSIEETISYKRKME 308
Score = 72 (30.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 33/146 (22%), Positives = 65/146 (44%)
Query: 32 KHWLRY--IEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYE 89
K W +Y +E N + I+ ++Y + PG W +++ +Q ++
Sbjct: 134 KLWYKYLIVEESLNNVE-IVRSLYTKWCSLEPG-VNAWNSFVDFEIRQ--------KNWN 183
Query: 90 DVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQ-TRHVFDRALRALPITQHHRVWP-L 147
V + + V H + WL + RF ++H T+ TR V+ A+ + Q+ ++W +
Sbjct: 184 GVREIYSK-YVMAHPQMQTWLKWVRF-ENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDM 241
Query: 148 YLS-FVKSHAVPETAVRVFRRYLKLF 172
++ V S A E A + + R L+
Sbjct: 242 EVAKLVNSFAHWEAAQQEYERSSALY 267
Score = 71 (30.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAI--INTIYERSLKELPGSYKLWYNYL 71
+E +L + + W+RYI+ + K I + R++ LP KLWY YL
Sbjct: 88 FERALLVDSSFIPLWIRYIDAELKV-KCINHARNLMNRAISTLPRVDKLWYKYL 140
Score = 69 (29.3 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 21/94 (22%), Positives = 40/94 (42%)
Query: 20 YEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQV 78
YE + RN + W+RY + + + +I+ER+L LW Y+ ++
Sbjct: 54 YEGYLKRNRLDMGQWIRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRYIDA---EL 110
Query: 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDY 112
K K I N R++ + ++ ++W Y
Sbjct: 111 KVKCINH-----ARNLMNRAISTLPRVDKLWYKY 139
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 128 (50.1 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 54/235 (22%), Positives = 99/235 (42%)
Query: 467 HDEAETVQARV-----YKSIKLWSLYADLE---ESFGTFK-AYEKGIALFKWPYIFDIWN 517
HD A +V R Y++ LW YA+ E +S + +++ + + P + W
Sbjct: 87 HDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKIL--PRVDQFWY 144
Query: 518 TYLTKFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVYER 577
Y+ + G ++ AR +FE+ ++ P + + + ++YER
Sbjct: 145 KYI--HMEEILGN-IDGARKIFERWMDWSPDQQAWLCFIKFELR---YNEIERSRSIYER 198
Query: 578 ATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLP--EEPTRQMCLKFAEMET 635
VL F Y K + + R +YERAIE L EE + + FAE E
Sbjct: 199 F---VLCHPKASSFIRYAKFEMKNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEE 255
Query: 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690
E++RAR +Y + + + +FE +GN++ + + + +R +Q
Sbjct: 256 LCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQ 310
Score = 115 (45.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 51/211 (24%), Positives = 87/211 (41%)
Query: 482 KLWSLYADLEESFGTFKAYEKGIALFK-WPYIFDIWNTYLTKFLSRYGGTKLERARDLFE 540
+ W Y +EE G K + W W ++ KF RY ++ER+R ++E
Sbjct: 141 QFWYKYIHMEEILGNIDGARKIFERWMDWSPDQQAWLCFI-KFELRYN--EIERSRSIYE 197
Query: 541 QCLEACPPRXXXXXXXXXXXXXXXH-GLARHAMAVYERATGAVLP-EEMFEMFNIYIKKA 598
+ + C P+ LAR VYERA + EE EM + +
Sbjct: 198 RFV-LCHPKASSFIRYAKFEMKNSQVSLAR---IVYERAIEMLKDVEEEAEMIFVAFAEF 253
Query: 599 AEIYG-IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGE---IDRA---RAIYAHCS 651
E+ + + R +Y+ A++ +P+ + KF E + G ID A R +
Sbjct: 254 EELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQYEG 313
Query: 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREM 682
++ + W + S E T G++D +RE+
Sbjct: 314 EVRKNPLNYDSWFDYISLEETLGDKDRIREV 344
Score = 106 (42.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 47/219 (21%), Positives = 99/219 (45%)
Query: 88 YEDVNNTFERSLVF-MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWP 146
++ + +ER+L ++ +WL Y F M + R+V+DRA++ LP + W
Sbjct: 87 HDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKILPRVD--QFWY 144
Query: 147 LYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFV 206
Y+ + + A ++F R++ P D + ++ ++ R +E ++ + + E FV
Sbjct: 145 KYIHMEEILGNIDGARKIFERWMDWSP-DQQAWLCFIKFELRYNE--IERSRSIY-ERFV 200
Query: 207 SKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG 266
H K++ + EM + R + AI L+ ++ ++ + A++
Sbjct: 201 LCHPKASSFIRYAKFEMKNSQVSLARIVYERAIEM--LKDVEEEAEMIFVAFAEFEELCK 258
Query: 267 LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNK 305
ERAR +Y+ A+ + R ++ + FE+ NK
Sbjct: 259 EVERARFLYKYALDHIPKGRA-EDLYKKFVAFEKQYGNK 296
Score = 65 (27.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 606 KTRQIYERAIESLP-EEPTRQ------MCLKFAEMETKLGE-IDRARAIYAHC 650
+ R++YERAI ++P E R + + +A E L E ++R RA+Y C
Sbjct: 340 RIREVYERAIANVPLAEEKRYWQRYIYLWIDYALFEEILAEDVERTRAVYREC 392
Score = 64 (27.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE 440
HTLW+++ +F N + AR ++D+A + +V+ W ++ +E
Sbjct: 106 HTLWLKYAEFEMRNKSVNHARNVWDRAVKI-LPRVDQF---WYKYIHME 150
Score = 48 (22.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR 442
+W+ + + E + AR ++++A + T+W ++AE E+R
Sbjct: 73 VWVRYADWEESQKDHDRARSVWERALEDESYRNH---TLWLKYAEFEMR 118
>GENEDB_PFALCIPARUM|PFD0180c [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386 GO:GO:0003723
GO:GO:0005622 Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245
KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 135 (52.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 69/287 (24%), Positives = 129/287 (44%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK------NAPKAIINT--IYERSLKELP--GSY 64
+E + YE+E+ +N W YI+ ++ N K II +YER++ +P S
Sbjct: 304 KERIFYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSK 363
Query: 65 KLWYNYLKLRRKQVKGKVITDPSYE---DVNNTFERSLV-FMHKMPRIWLDYGRFLMDQH 120
K W Y+ L + + + + DV N + L + +I++ Y F + Q
Sbjct: 364 KFWKRYIYLWINYSIFEELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQL 423
Query: 121 KITQTRHVFDRALRALPITQHHRVWPLYLSF-VKSHAVPETAVRVFRRYLKLFPEDAEDY 179
+ + R +F+ AL+ +P + +++ + F +K + E V+ +Y++ FP +++ +
Sbjct: 424 NVNKARSIFNNALQTIP---NEKIFEKFCEFELKLGNIRECR-NVYAKYVEAFPFNSKAW 479
Query: 180 IEYLSSIERLDEA--AVKLAYI-VNKESFVSKHGKSNHQLWNELCEM-IS-QNPDKIRSL 234
I ++ LDE A ++A I +N + K +W +M I+ Q D R L
Sbjct: 480 ISMINFELSLDEVERARQIAEIAINLDDM-----KLPELIWKNYIDMEINLQEYDNARKL 534
Query: 235 NVDAIIRGGLRRYTDQLGHLWNSLADY-YIRSGLFERARDIYEEAIQ 280
D ++ Q ++ S A++ YI E R I EE I+
Sbjct: 535 -YDRLLN------ITQHYKVYKSYAEFTYIYLDDIEMCRKILEEGIE 574
Score = 96 (38.9 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 29/117 (24%), Positives = 51/117 (43%)
Query: 574 VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE-EPTRQMCLKFAE 632
++ER ++ P+ E F +IK + I + R YE+ IE LP + F
Sbjct: 194 IFERLIVSI-PK--LECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCN 250
Query: 633 METKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSV 689
E + E +R + IY +I + + + F+ + N+D + E L IK +
Sbjct: 251 FEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANKDELHESLLIKERI 307
Score = 93 (37.8 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 44/187 (23%), Positives = 71/187 (37%)
Query: 513 FDIWNTYLTKFLSRYGGTKLE----RARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLA 568
+DIW Y+ S E R RDL+E+ + P + +
Sbjct: 320 YDIWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFWKRYIYLWINYSIF 379
Query: 569 RHAMAV-YERATGA------VLPEEMFEMFNIYIKKAA-EI--YGIPKTRQIYERAIESL 618
A +RA +L F I+I A E+ + K R I+ A++++
Sbjct: 380 EELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARSIFNNALQTI 439
Query: 619 PEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDT 678
P E + KF E E KLG I R +YA + A W + +FE++ +
Sbjct: 440 PNEKIFE---KFCEFELKLGNIRECRNVYAKYVEAFPFNSKA--WISMINFELSLDEVER 494
Query: 679 MREMLRI 685
R++ I
Sbjct: 495 ARQIAEI 501
Score = 89 (36.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 40/166 (24%), Positives = 69/166 (41%)
Query: 35 LRYIEHKKNAPKAIINTIYERSLKELP-GSYKLWYNYLKLRRKQVKGKV------ITDPS 87
L +EHK N N I E L E K + + ++ RR + + I
Sbjct: 32 LEEVEHKVN-----YNLIDEEELNEYRINKRKEYEDKIRKRRYMISTYIKYGLWEIKQKD 86
Query: 88 YEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPL 147
E + FER+L + +WL Y + I R++ +R + LP+ + W
Sbjct: 87 IERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPL--ENIFWKK 144
Query: 148 Y--LSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDE 191
Y L + ++ V A ++ R++K F D ++ Y+ ER +E
Sbjct: 145 YAHLEEILNNYV--NARNIYERWIK-FKIDESSFLCYIYFEERCNE 187
Score = 78 (32.5 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 45/187 (24%), Positives = 81/187 (43%)
Query: 22 EEILRNPFSVKH-WLRYIEHK---KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQ 77
E L ++ K+ WL+YIE + KN A + ER + LP W Y L
Sbjct: 95 ERALNIDYTNKNLWLKYIEVELINKNINSA--RNLLERVVLLLPLENIFWKKYAHLE--- 149
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRI-WLDYGRFLMDQHKITQTRHVFDRALRAL 136
+++ + Y + N +ER + F K+ +L Y F ++I + R +F+R + ++
Sbjct: 150 ---EILNN--YVNARNIYERWIKF--KIDESSFLCYIYFEERCNEINKCREIFERLIVSI 202
Query: 137 PITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE---DAEDYIEYLSSIERLDE-A 192
P + + ++ F K + A + + ++L P D YI + + E +E
Sbjct: 203 PKLE---CFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYE 259
Query: 193 AVKLAYI 199
K YI
Sbjct: 260 RCKKIYI 266
Score = 44 (20.5 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 268 FERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
+ER + IY EA++ + + ++ + QF++ NK +E+ E+
Sbjct: 258 YERCKKIYIEALKILPKNKS-ELLYKNFLQFQKKYANK--DELHES 300
>UNIPROTKB|Q8I1Z2 [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form" species:36329
"Plasmodium falciparum 3D7" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 GO:GO:0003723 GO:GO:0005622
Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 135 (52.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 69/287 (24%), Positives = 129/287 (44%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK------NAPKAIINT--IYERSLKELP--GSY 64
+E + YE+E+ +N W YI+ ++ N K II +YER++ +P S
Sbjct: 304 KERIFYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSK 363
Query: 65 KLWYNYLKLRRKQVKGKVITDPSYE---DVNNTFERSLV-FMHKMPRIWLDYGRFLMDQH 120
K W Y+ L + + + + DV N + L + +I++ Y F + Q
Sbjct: 364 KFWKRYIYLWINYSIFEELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQL 423
Query: 121 KITQTRHVFDRALRALPITQHHRVWPLYLSF-VKSHAVPETAVRVFRRYLKLFPEDAEDY 179
+ + R +F+ AL+ +P + +++ + F +K + E V+ +Y++ FP +++ +
Sbjct: 424 NVNKARSIFNNALQTIP---NEKIFEKFCEFELKLGNIRECR-NVYAKYVEAFPFNSKAW 479
Query: 180 IEYLSSIERLDEA--AVKLAYI-VNKESFVSKHGKSNHQLWNELCEM-IS-QNPDKIRSL 234
I ++ LDE A ++A I +N + K +W +M I+ Q D R L
Sbjct: 480 ISMINFELSLDEVERARQIAEIAINLDDM-----KLPELIWKNYIDMEINLQEYDNARKL 534
Query: 235 NVDAIIRGGLRRYTDQLGHLWNSLADY-YIRSGLFERARDIYEEAIQ 280
D ++ Q ++ S A++ YI E R I EE I+
Sbjct: 535 -YDRLLN------ITQHYKVYKSYAEFTYIYLDDIEMCRKILEEGIE 574
Score = 96 (38.9 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 29/117 (24%), Positives = 51/117 (43%)
Query: 574 VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE-EPTRQMCLKFAE 632
++ER ++ P+ E F +IK + I + R YE+ IE LP + F
Sbjct: 194 IFERLIVSI-PK--LECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCN 250
Query: 633 METKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSV 689
E + E +R + IY +I + + + F+ + N+D + E L IK +
Sbjct: 251 FEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANKDELHESLLIKERI 307
Score = 93 (37.8 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 44/187 (23%), Positives = 71/187 (37%)
Query: 513 FDIWNTYLTKFLSRYGGTKLE----RARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLA 568
+DIW Y+ S E R RDL+E+ + P + +
Sbjct: 320 YDIWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFWKRYIYLWINYSIF 379
Query: 569 RHAMAV-YERATGA------VLPEEMFEMFNIYIKKAA-EI--YGIPKTRQIYERAIESL 618
A +RA +L F I+I A E+ + K R I+ A++++
Sbjct: 380 EELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARSIFNNALQTI 439
Query: 619 PEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDT 678
P E + KF E E KLG I R +YA + A W + +FE++ +
Sbjct: 440 PNEKIFE---KFCEFELKLGNIRECRNVYAKYVEAFPFNSKA--WISMINFELSLDEVER 494
Query: 679 MREMLRI 685
R++ I
Sbjct: 495 ARQIAEI 501
Score = 89 (36.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 40/166 (24%), Positives = 69/166 (41%)
Query: 35 LRYIEHKKNAPKAIINTIYERSLKELP-GSYKLWYNYLKLRRKQVKGKV------ITDPS 87
L +EHK N N I E L E K + + ++ RR + + I
Sbjct: 32 LEEVEHKVN-----YNLIDEEELNEYRINKRKEYEDKIRKRRYMISTYIKYGLWEIKQKD 86
Query: 88 YEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPL 147
E + FER+L + +WL Y + I R++ +R + LP+ + W
Sbjct: 87 IERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPL--ENIFWKK 144
Query: 148 Y--LSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDE 191
Y L + ++ V A ++ R++K F D ++ Y+ ER +E
Sbjct: 145 YAHLEEILNNYV--NARNIYERWIK-FKIDESSFLCYIYFEERCNE 187
Score = 78 (32.5 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 45/187 (24%), Positives = 81/187 (43%)
Query: 22 EEILRNPFSVKH-WLRYIEHK---KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQ 77
E L ++ K+ WL+YIE + KN A + ER + LP W Y L
Sbjct: 95 ERALNIDYTNKNLWLKYIEVELINKNINSA--RNLLERVVLLLPLENIFWKKYAHLE--- 149
Query: 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRI-WLDYGRFLMDQHKITQTRHVFDRALRAL 136
+++ + Y + N +ER + F K+ +L Y F ++I + R +F+R + ++
Sbjct: 150 ---EILNN--YVNARNIYERWIKF--KIDESSFLCYIYFEERCNEINKCREIFERLIVSI 202
Query: 137 PITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE---DAEDYIEYLSSIERLDE-A 192
P + + ++ F K + A + + ++L P D YI + + E +E
Sbjct: 203 PKLE---CFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYE 259
Query: 193 AVKLAYI 199
K YI
Sbjct: 260 RCKKIYI 266
Score = 44 (20.5 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 268 FERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
+ER + IY EA++ + + ++ + QF++ NK +E+ E+
Sbjct: 258 YERCKKIYIEALKILPKNKS-ELLYKNFLQFQKKYANK--DELHES 300
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 106 (42.4 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAW 666
+ ++ +RA+E LP + + KFA++E +LG+ +RA+AI+ + R W+ +
Sbjct: 1743 SHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDV--WSVY 1800
Query: 667 KSFEITHGNEDTMREM 682
I HG++ +R++
Sbjct: 1801 IDMTIKHGSQKEVRDI 1816
Score = 85 (35.0 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 27/126 (21%), Positives = 57/126 (45%)
Query: 81 KVITDPSYEDVN-NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT 139
+ + DP + + + F+R L+ +WL Y F + +I + R V +RAL+ +
Sbjct: 1592 EALMDPGRQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFR 1651
Query: 140 QHHR---VWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKL 196
+ VW L+ + E+ +VF R ++ + E + ++ +L+ I E +
Sbjct: 1652 EEQEKLNVWVALLNLENMYGSQESLTKVFERAVQ-YNEPLKVFL-HLADIYNKSEKFQEA 1709
Query: 197 AYIVNK 202
+ N+
Sbjct: 1710 GELYNR 1715
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 119 (46.9 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 46/228 (20%), Positives = 104/228 (45%)
Query: 74 RRKQVK---GKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFD 130
R K+++ G+++ + E+ + FE+ + +W+ Y F++ I + R + +
Sbjct: 1613 REKKIQAAEGRLLEHHAPENADE-FEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAE 1671
Query: 131 RALRALPITQHHR---VWPLYLSFVKSHAVP--ETAVRVFRRYLKLFPEDAEDYIEYLSS 185
RALR + I + +W Y + H P E+ +VF R + + + + Y+ L
Sbjct: 1672 RALRTINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFER-ARQYCDPKKVYLALLGV 1730
Query: 186 IERLDEAAVKLAYIVNKESFVSKHGKSNHQLW-NELCEMISQNPDKIRSLNVDAIIRGGL 244
ER ++ KLA + E K K + ++W ++ + QN + I+S+ A++
Sbjct: 1731 YERTEQ--YKLADKLLDEMI--KKFKQSCKIWLRKIQSSLKQNEEAIQSVVNRALLCLPR 1786
Query: 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVF 292
++ + ++ ++ + G+ +R R ++E ++ D V+
Sbjct: 1787 HKHIKFISQ--TAILEF--KCGVADRGRSLFEGVLREYPKRTDLWSVY 1830
Score = 68 (29.0 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 566 GLARHAMAVYERATGAVLPE--EMFEMFNIYIKKAAEIYGIPKTRQIYERAIE-SLPEEP 622
G+A +++E VL E + +++++Y+ + + R ++ERAI SLP +
Sbjct: 1804 GVADRGRSLFE----GVLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPKK 1859
Query: 623 TRQMCLKFAEMETKLGEIDRARAI 646
+ + KF E E +G+ +R +
Sbjct: 1860 MKFLFKKFLEYEKSVGDEERVEYV 1883
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 106 (42.4 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAW 666
+ ++ +RA+E LP++ + KFA++E +LG+ +RARAI+ I R W+ +
Sbjct: 1747 SHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDV--WSVY 1804
Query: 667 KSFEITHGNEDTMR 680
I HG++ R
Sbjct: 1805 IDMIIKHGSQKEAR 1818
Score = 81 (33.6 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 26/126 (20%), Positives = 56/126 (44%)
Query: 81 KVITDPSYEDVN-NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT 139
+ + DP + + F+R ++ +WL Y F + +I + R V +RAL+ +
Sbjct: 1596 EALMDPGRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFR 1655
Query: 140 QHHR---VWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKL 196
+ VW L+ + E+ +VF R ++ + E + ++ +L+ I E +
Sbjct: 1656 EEQEKLNVWVALLNLENMYGSQESLTKVFERAVQ-YNEPLKVFL-HLADIYTKSEKFQEA 1713
Query: 197 AYIVNK 202
+ N+
Sbjct: 1714 GELYNR 1719
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 106 (42.4 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAW 666
+ ++ +RA+E LP++ + KFA++E +LG+ +RARAI+ I R W+ +
Sbjct: 1747 SHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDV--WSVY 1804
Query: 667 KSFEITHGNEDTMR 680
I HG++ R
Sbjct: 1805 IDMIIKHGSQKEAR 1818
Score = 81 (33.6 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 26/126 (20%), Positives = 56/126 (44%)
Query: 81 KVITDPSYEDVN-NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT 139
+ + DP + + F+R ++ +WL Y F + +I + R V +RAL+ +
Sbjct: 1596 EALMDPGRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFR 1655
Query: 140 QHHR---VWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKL 196
+ VW L+ + E+ +VF R ++ + E + ++ +L+ I E +
Sbjct: 1656 EEQEKLNVWVALLNLENMYGSQESLTKVFERAVQ-YNEPLKVFL-HLADIYTKSEKFQEA 1713
Query: 197 AYIVNK 202
+ N+
Sbjct: 1714 GELYNR 1719
>UNIPROTKB|E1C8G8 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 OMA:GWVYLLQ
EMBL:AADN02004089 IPI:IPI00598251 Ensembl:ENSGALT00000020376
Uniprot:E1C8G8
Length = 628
Score = 98 (39.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 60/317 (18%), Positives = 127/317 (40%)
Query: 6 FTG-IYT---TENEEDLP-----YEEEILRNPFSVKHWLRY--IEHKKNAPKAIINTIYE 54
FTG +Y E E LP +++ P+ +W +Y +E + + K + +Y
Sbjct: 55 FTGWVYLLQYVEQENHLPAARKAFDKFFTHYPYCYGYWKKYADLERRHDNIKQS-DEVYR 113
Query: 55 RSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNT----FERSLVFM---HKMPR 107
R L+ +P S LW +Y+ + + DP + N+T +E +++ + R
Sbjct: 114 RGLQAIPLSVDLWIHYINFLKDTL------DPDDPEANSTIRGAYEHAVLAAGTDFRSDR 167
Query: 108 IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR 167
+W Y + +Q + + ++DR L +P + + + V+++ +P + +
Sbjct: 168 LWEMYINWEDEQGNLREVTSIYDRIL-GIPTQLYSHHFQRFKDHVQNN-LPRDLL-TSEQ 224
Query: 168 YLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQN 227
+++L E A D+ I + +++ H++ EM + N
Sbjct: 225 FIQLRRELASVNGHAGGDASAGDDLPSGTEDITDPAKLITEIENMRHRIIEIHQEMFNHN 284
Query: 228 PDKI--RSLNVDAIIRGGLRRYTDQLGHL--WNSLADYYIRSGLFERARDIYEEAIQTVT 283
++ R + I R + L W ++ I +G ER ++E + +
Sbjct: 285 EHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCA 344
Query: 284 TVRDFTQVFDAYAQFEE 300
DF + YA++ E
Sbjct: 345 LYEDF---WIKYAKYME 358
Score = 78 (32.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 565 HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIE-SLPEEPT 623
+G + ++ER V+ ++E F I K E + I R +Y RA LP++P
Sbjct: 326 NGTHERVVVLFERC---VISCALYEDFWIKYAKYMENHSIEGVRHVYSRACTIHLPKKPM 382
Query: 624 RQMCLKFAEMETKLGEIDRARAI 646
M +A E + G ID AR I
Sbjct: 383 VHML--WAAFEEQQGNIDEARRI 403
>MGI|MGI:1351825 [details] [associations]
symbol:Cstf3 "cleavage stimulation factor, 3' pre-RNA,
subunit 3" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843
SMART:SM00386 MGI:MGI:1351825 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF EMBL:BC003241 IPI:IPI00116929
RefSeq:NP_663504.1 UniGene:Mm.259876 UniGene:Mm.479443 PDB:2OND
PDB:2OOE PDBsum:2OND PDBsum:2OOE ProteinModelPortal:Q99LI7
SMR:Q99LI7 STRING:Q99LI7 PhosphoSite:Q99LI7 PaxDb:Q99LI7
PRIDE:Q99LI7 Ensembl:ENSMUST00000028599 GeneID:228410
KEGG:mmu:228410 GeneTree:ENSGT00390000006758 InParanoid:Q99LI7
ChiTaRS:CSTF3 EvolutionaryTrace:Q99LI7 NextBio:378988 Bgee:Q99LI7
Genevestigator:Q99LI7 GermOnline:ENSMUSG00000027176 Uniprot:Q99LI7
Length = 717
Score = 105 (42.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 34/141 (24%), Positives = 67/141 (47%)
Query: 21 EEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80
E+++ NP+ + W I +N P YER + + P S + W Y++ ++K
Sbjct: 22 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEA---EIKA 78
Query: 81 KVITDPSYEDVNNTFERSLV-FMH-KMPRIWLDY-----GRFLMDQHKITQTRHVFDRAL 133
K +Y+ V F+R L+ +H + + +L Y G+ + K+ Q +D AL
Sbjct: 79 K-----NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA---YDFAL 130
Query: 134 RALPIT-QHHRVWPLYLSFVK 153
+ + +++W Y++F+K
Sbjct: 131 DKIGMEIMSYQIWVDYINFLK 151
Score = 72 (30.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 47/187 (25%), Positives = 78/187 (41%)
Query: 466 YHDEAETVQARVY-----KSIKLWSLYADLEESFGTFKAYEKGIALF-KWPYIFDIWNT- 518
+ DEA + R K++ L+ YAD EES K YEK +++ + I DI T
Sbjct: 320 FSDEAANIYERAISTLLKKNMLLYFAYADYEES--RMK-YEKVHSIYNRLLAIEDIDPTL 376
Query: 519 -YLT--KFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVY 575
Y+ KF R G K R +F++ E R + A ++
Sbjct: 377 VYIQYMKFARRAEGIK--SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV-AFKIF 433
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFAEM 633
E G ++ E YI + + TR ++ER + S LP E + ++ +F
Sbjct: 434 E--LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 491
Query: 634 ETKLGEI 640
E+ +G++
Sbjct: 492 ESNIGDL 498
>FB|FBgn0039600 [details] [associations]
symbol:CG1646 species:7227 "Drosophila melanogaster"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 InterPro:IPR001623 EMBL:AE014297 Gene3D:1.25.40.10
SMART:SM00271 GO:GO:0000398 GO:GO:0000381 eggNOG:COG5107
GO:GO:0005685 GeneTree:ENSGT00390000005033 KO:K13217 EMBL:AY051737
RefSeq:NP_001097957.1 RefSeq:NP_001097958.1 RefSeq:NP_651634.1
RefSeq:NP_733256.2 RefSeq:NP_788753.1 RefSeq:NP_788754.2
UniGene:Dm.31288 ProteinModelPortal:Q7KRW8 SMR:Q7KRW8 IntAct:Q7KRW8
MINT:MINT-820225 STRING:Q7KRW8 PaxDb:Q7KRW8 PRIDE:Q7KRW8
EnsemblMetazoa:FBtr0085322 GeneID:43399 KEGG:dme:Dmel_CG1646
UCSC:CG1646-RB FlyBase:FBgn0039600 InParanoid:Q7KRW8 OMA:IRWENES
OrthoDB:EOG4ZKH2F PhylomeDB:Q7KRW8 GenomeRNAi:43399 NextBio:833726
Bgee:Q7KRW8 Uniprot:Q7KRW8
Length = 1066
Score = 123 (48.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 50/206 (24%), Positives = 90/206 (43%)
Query: 2 ESTGFTG----IYTTENEEDLP-----YEEEILRNPFSVKHWLRYIEH-KKNAPKAIINT 51
+ST FTG + +NE D Y+ + P+ +W +Y ++ K+ KA
Sbjct: 375 DSTDFTGWTYLLQYVDNESDAEAAREAYDTFLSHYPYCYGYWRKYADYEKRKGIKANCYK 434
Query: 52 IYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV---FMHKMPRI 108
++ER L+ +P S LW +YL VK D ++ V + +ER++ + ++
Sbjct: 435 VFERGLEAIPLSVDLWIHYLM----HVKSNHGDDETF--VRSQYERAVKACGLEFRSDKL 488
Query: 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPET-AVRVFRR 167
W Y R+ + + + ++DR L A+P ++ + + + H V T A R
Sbjct: 489 WDAYIRWENESKRYHRVVQIYDRLL-AIPTQGYNGHFDNFQDLINQHDVTITLANEEVIR 547
Query: 168 YLKLFPEDAEDYIEYLSSIERLDEAA 193
K F E + SS R D ++
Sbjct: 548 LRKDFHERQQSKSSKSSSKHRRDSSS 573
Score = 57 (25.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 32/139 (23%), Positives = 53/139 (38%)
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACP--PRXXXXXXXXXXXXXXXHGLARHAMA 573
W YL + + G + ER LFE+CL AC G+
Sbjct: 708 WKDYLDFEIEK--GDR-ERVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVRD 764
Query: 574 VYERATGAVLPEEMFEMFNIYIKKAA--EIY-GIPKTRQIYERAIESLPEEPTRQMCLKF 630
VY RA P++ ++++ AA E +I +R + P Q+ +
Sbjct: 765 VYRRACRIHHPDKP----SLHLMWAAFEECQMNFDDAAEILQRIDQRCPN--LLQLSYRR 818
Query: 631 AEMETKLGEIDRARAIYAH 649
+E + G +D+ R +Y H
Sbjct: 819 INVERRRGALDKCRELYKH 837
>UNIPROTKB|E2R479 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 CTD:1479 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:AAEX03011399 RefSeq:XP_533159.2
ProteinModelPortal:E2R479 Ensembl:ENSCAFT00000011665 GeneID:475948
KEGG:cfa:475948 NextBio:20851693 Uniprot:E2R479
Length = 717
Score = 105 (42.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 34/141 (24%), Positives = 67/141 (47%)
Query: 21 EEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80
E+++ NP+ + W I +N P YER + + P S + W Y++ ++K
Sbjct: 22 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEA---EIKA 78
Query: 81 KVITDPSYEDVNNTFERSLV-FMH-KMPRIWLDY-----GRFLMDQHKITQTRHVFDRAL 133
K +Y+ V F+R L+ +H + + +L Y G+ + K+ Q +D AL
Sbjct: 79 K-----NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA---YDFAL 130
Query: 134 RALPIT-QHHRVWPLYLSFVK 153
+ + +++W Y++F+K
Sbjct: 131 DKIGMEIMSYQIWVDYINFLK 151
Score = 71 (30.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 47/187 (25%), Positives = 78/187 (41%)
Query: 466 YHDEAETVQARVY-----KSIKLWSLYADLEESFGTFKAYEKGIALF-KWPYIFDIWNT- 518
+ DEA + R K++ L+ YAD EES K YEK +++ + I DI T
Sbjct: 320 FSDEAANIYERAISTLLKKNMLLYFAYADYEES--RMK-YEKVHSIYNRLLAIEDIDPTL 376
Query: 519 -YLT--KFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVY 575
Y+ KF R G K R +F++ E R + A ++
Sbjct: 377 VYIQYMKFARRAEGIK--SGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSV-AFKIF 433
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFAEM 633
E G ++ E YI + + TR ++ER + S LP E + ++ +F
Sbjct: 434 E--LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 491
Query: 634 ETKLGEI 640
E+ +G++
Sbjct: 492 ESNIGDL 498
>UNIPROTKB|Q12996 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0006379 "mRNA
cleavage" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
GO:GO:0005654 EMBL:CH471064 Reactome:REACT_1675 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006379
GO:GO:0006369 Reactome:REACT_78 EMBL:U15782 EMBL:AK290836
EMBL:AC131263 EMBL:AL121926 EMBL:BC009792 EMBL:BC010533
EMBL:BC059948 EMBL:BC108319 EMBL:BM014288 IPI:IPI00015195
IPI:IPI00382661 IPI:IPI00651748 PIR:S50852 RefSeq:NP_001028677.1
RefSeq:NP_001028678.1 RefSeq:NP_001317.1 UniGene:Hs.44402
ProteinModelPortal:Q12996 SMR:Q12996 DIP:DIP-48674N IntAct:Q12996
STRING:Q12996 PhosphoSite:Q12996 DMDM:71153231 PaxDb:Q12996
PeptideAtlas:Q12996 PRIDE:Q12996 DNASU:1479 Ensembl:ENST00000323959
Ensembl:ENST00000431742 Ensembl:ENST00000438862 GeneID:1479
KEGG:hsa:1479 UCSC:uc001muh.3 CTD:1479 GeneCards:GC11M033106
H-InvDB:HIX0021822 HGNC:HGNC:2485 HPA:HPA039743 HPA:HPA040168
MIM:600367 neXtProt:NX_Q12996 PharmGKB:PA26987 eggNOG:COG5107
HOGENOM:HOG000231786 HOVERGEN:HBG053813 InParanoid:Q12996 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF PhylomeDB:Q12996 GenomeRNAi:1479
NextBio:6077 PMAP-CutDB:Q12996 ArrayExpress:Q12996 Bgee:Q12996
CleanEx:HS_CSTF3 Genevestigator:Q12996 GermOnline:ENSG00000176102
Uniprot:Q12996
Length = 717
Score = 105 (42.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 34/141 (24%), Positives = 67/141 (47%)
Query: 21 EEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80
E+++ NP+ + W I +N P YER + + P S + W Y++ ++K
Sbjct: 22 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEA---EIKA 78
Query: 81 KVITDPSYEDVNNTFERSLV-FMH-KMPRIWLDY-----GRFLMDQHKITQTRHVFDRAL 133
K +Y+ V F+R L+ +H + + +L Y G+ + K+ Q +D AL
Sbjct: 79 K-----NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA---YDFAL 130
Query: 134 RALPIT-QHHRVWPLYLSFVK 153
+ + +++W Y++F+K
Sbjct: 131 DKIGMEIMSYQIWVDYINFLK 151
Score = 71 (30.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 47/187 (25%), Positives = 78/187 (41%)
Query: 466 YHDEAETVQARVY-----KSIKLWSLYADLEESFGTFKAYEKGIALF-KWPYIFDIWNT- 518
+ DEA + R K++ L+ YAD EES K YEK +++ + I DI T
Sbjct: 320 FSDEAANIYERAISTLLKKNMLLYFAYADYEES--RMK-YEKVHSIYNRLLAIEDIDPTL 376
Query: 519 -YLT--KFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVY 575
Y+ KF R G K R +F++ E R + A ++
Sbjct: 377 VYIQYMKFARRAEGIK--SGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSV-AFKIF 433
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFAEM 633
E G ++ E YI + + TR ++ER + S LP E + ++ +F
Sbjct: 434 E--LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 491
Query: 634 ETKLGEI 640
E+ +G++
Sbjct: 492 ESNIGDL 498
>UNIPROTKB|Q5F4A0 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
Pfam:PF05843 SMART:SM00386 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF GeneTree:ENSGT00390000006758
EMBL:AADN02065603 EMBL:AJ851400 IPI:IPI00592390
RefSeq:NP_001012586.1 UniGene:Gga.22714 SMR:Q5F4A0 STRING:Q5F4A0
Ensembl:ENSGALT00000019104 GeneID:421595 KEGG:gga:421595
InParanoid:Q5F4A0 NextBio:20824338 Uniprot:Q5F4A0
Length = 718
Score = 105 (42.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 34/141 (24%), Positives = 67/141 (47%)
Query: 21 EEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80
E+++ NP+ + W I +N P YER + + P S + W Y++ ++K
Sbjct: 23 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEA---EIKA 79
Query: 81 KVITDPSYEDVNNTFERSLV-FMH-KMPRIWLDY-----GRFLMDQHKITQTRHVFDRAL 133
K +Y+ V F+R L+ +H + + +L Y G+ + K+ Q +D AL
Sbjct: 80 K-----NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA---YDFAL 131
Query: 134 RALPIT-QHHRVWPLYLSFVK 153
+ + +++W Y++F+K
Sbjct: 132 DKIGMEIMSYQIWVDYINFLK 152
Score = 71 (30.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 47/187 (25%), Positives = 78/187 (41%)
Query: 466 YHDEAETVQARVY-----KSIKLWSLYADLEESFGTFKAYEKGIALF-KWPYIFDIWNT- 518
+ DEA + R K++ L+ YAD EES K YEK +++ + I DI T
Sbjct: 321 FSDEAANIYERAISTLLKKNMLLYFAYADYEES--RMK-YEKVHSIYNRLLAIEDIDPTL 377
Query: 519 -YLT--KFLSRYGGTKLERARDLFEQCLEACPPRXXXXXXXXXXXXXXXHGLARHAMAVY 575
Y+ KF R G K R +F++ E R + A ++
Sbjct: 378 VYIQYMKFARRAEGIK--SGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSV-AFKIF 434
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFAEM 633
E G ++ E YI + + TR ++ER + S LP E + ++ +F
Sbjct: 435 E--LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 492
Query: 634 ETKLGEI 640
E+ +G++
Sbjct: 493 ESNIGDL 499
>UNIPROTKB|E1BWJ0 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 OMA:SQAVMKM
EMBL:AADN02034959 EMBL:AADN02034960 EMBL:AADN02034961
EMBL:AADN02034962 EMBL:AADN02034963 IPI:IPI00823214
ProteinModelPortal:E1BWJ0 Ensembl:ENSGALT00000038892
ArrayExpress:E1BWJ0 Uniprot:E1BWJ0
Length = 731
Score = 124 (48.7 bits), Expect = 0.00042, P = 0.00042
Identities = 81/317 (25%), Positives = 140/317 (44%)
Query: 13 ENEEDLP-YEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKEL-PGSYKLWYNY 70
ENE ++ EE++ N F L I+ + + + + + EL P + ++W ++
Sbjct: 46 ENEAEIQRLEEQLSINAFDYNCHLDLIKLLRQEGELVKLRRARQKMSELFPLTEEIWLDW 105
Query: 71 LKLRRKQVKGKVITDPSY-EDVNNTFERSLVFMHKMPRIWLDYGRFLM----DQHKITQT 125
LK ++K + ++ S E V FER+ V + P IWL+Y ++ + + I +
Sbjct: 106 LK---DEIK--MASEVSEREKVYELFERA-VKDYICPEIWLEYAQYSIGGIGQEGGIEKV 159
Query: 126 RHVFDRALRA--LPITQHHRVWPLYLSFVKSHAVPETA-VR----------VFRRYLKLF 172
R +F+RAL A L +T+ +W Y F +A+ ETA VR +FRR L +
Sbjct: 160 RSIFERALTAVGLHVTKGTALWEAYREF--ENAILETAQVRPVCQLERIHTLFRRQLGIP 217
Query: 173 PEDAE-DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKI 231
D E Y EY E E + E+ + + K+ QL E C+ + D +
Sbjct: 218 LLDMEASYAEY----EEWSEDPIP-------ETTIKNYKKALQQL--EKCKPYEEALDLL 264
Query: 232 RSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRD---- 287
L + T +L + + D+ +++G R + IYE A+ V D
Sbjct: 265 SQLGAE----------TPKLAE-YQAYIDFEMKAGDPARIQLIYERALAENCLVPDLWAR 313
Query: 288 FTQVFDAYAQFEELSLN 304
+ Q D + +EL L+
Sbjct: 314 YNQYLDRQLKVKELVLS 330
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 117 (46.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 25/93 (26%), Positives = 53/93 (56%)
Query: 593 IYIKKAAEIYGIPK---TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAH 649
++IK A + G + + ++ +RA+E LP + + +KFA++E +LG+++RA+AI+ +
Sbjct: 1718 VWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVERAKAIFEN 1777
Query: 650 CSQICDPRVTAGFWAAWKSFEITHGNEDTMREM 682
R W+ + I HG++ +R++
Sbjct: 1778 TLSTYPKRTDV--WSVYIDMTIKHGSQTAVRDI 1808
Score = 62 (26.9 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKAT-LVPYTKVEDLATVWCEWAELELRAGQEE 447
LW+++ F+ ++E AR + ++A + + + ++ VW LE G +E
Sbjct: 1612 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQE 1666
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 703 639 0.00093 120 3 11 22 0.37 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 56
No. of states in DFA: 629 (67 KB)
Total size of DFA: 389 KB (2188 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 50.63u 0.11s 50.74t Elapsed: 00:00:19
Total cpu time: 50.69u 0.11s 50.80t Elapsed: 00:00:19
Start: Thu Aug 15 13:24:54 2013 End: Thu Aug 15 13:25:13 2013