RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6461
(703 letters)
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 133 bits (334), Expect = 5e-33
Identities = 82/588 (13%), Positives = 187/588 (31%), Gaps = 95/588 (16%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVK 79
E+++ NP+ + W I +N P YER + + P S + W Y++ K
Sbjct: 2 AEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-- 59
Query: 80 GKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD-----QHKITQTRHVFDRALR 134
+Y+ V F+R L+ + +W Y ++ + + +D AL
Sbjct: 60 ------KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALD 112
Query: 135 ALPI-TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
+ + +++W Y++F+K + + ++++ R+ +
Sbjct: 113 KIGMEIMSYQIWVDYINFLKGVE----------------AVGSYAENQRITAVRRVYQRG 156
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
+ QLW + + +N+ + R D +
Sbjct: 157 CV------------NPMINIEQLWRDYNKY-------EEGINIHLAKKMIEDRSRDYMNA 197
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
+ + GL A + + ++ Y Q+E+ N
Sbjct: 198 RRVAKEYETVMKGLDRNAPSVPPQNTP---QEAQQVDMWKKYIQWEK-----------SN 243
Query: 314 DTPSEEDDIELELRLARLEDLMER----RLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPL 369
+E+ + + + E + + + + +L +
Sbjct: 244 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303
Query: 370 DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL 429
+ Y A+ T+ K L+ + + E + E I+++ + D
Sbjct: 304 EAANIYERAISTLLK-----KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---DP 355
Query: 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYAD 489
V+ ++ + RA ++ + +A + A ++ K +
Sbjct: 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV------ 409
Query: 490 LEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC--P 547
FK +E G+ + I + Y+ +LS + R LFE+ L + P
Sbjct: 410 ------AFKIFELGLKKY--GDIPEYVLAYI-DYLSHLN--EDNNTRVLFERVLTSGSLP 458
Query: 548 PRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYI 595
P + ++ + E G + V +R A E + + +
Sbjct: 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLV 506
Score = 119 bits (300), Expect = 1e-28
Identities = 81/663 (12%), Positives = 182/663 (27%), Gaps = 167/663 (25%)
Query: 52 IYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLD 111
+ E+ L+E P W ++ + Q + T+ER + R W
Sbjct: 1 MAEKKLEENPYDLDAWSILIREAQNQ---------PIDKARKTYERLVAQFPSSGRFWKL 51
Query: 112 YGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKL 171
Y + + +F R L + + +++ YL
Sbjct: 52 YIEAEIKAKNYDKVEKLFQRCLMKVL-----------------------HIDLWKCYLSY 88
Query: 172 FPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKI 231
E Y + + + A+ ++Q+W + +
Sbjct: 89 VRETKGKLPSYKEKMAQAYDFALDKI----------GMEIMSYQIWVDYINFLKGVEAV- 137
Query: 232 RSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQV 291
Y + R +Y+ + Q+
Sbjct: 138 ----------------------------GSYAENQRITAVRRVYQRGCVNPMINIE--QL 167
Query: 292 FDAYAQFE----ELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLL 347
+ Y ++E K +E+ + + + E E + L+
Sbjct: 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA-----------P 216
Query: 348 RQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407
P N + ++V ++ +I++ K +
Sbjct: 217 SVPPQNTPQEAQQVDMWKK----------------------------YIQWEK--SNPLR 246
Query: 408 LEDARLIFDKATLVPYTKVEDLAT---VWCEWAELELRAGQEEAALRLMARATATPARPV 464
ED LI + + L +W E A+ ++ + A M A
Sbjct: 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306
Query: 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524
++ A + + K++ L+ YAD EES
Sbjct: 307 NIYERA--ISTLLKKNMLLYFAYADYEESRM----------------------------- 335
Query: 525 SRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584
K E+ ++ + L +Y+ Y K + ++++A
Sbjct: 336 ------KYEKVHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMIFKKAREDART 388
Query: 585 EEMFEMFNIYIKKAAEIYGIPKT-RQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRA 643
+ +I+E ++ + P + L + + + L E +
Sbjct: 389 RHHVYVT--AALMEYYCSKDKSVAFKIFELGLKKYGDIP--EYVLAYIDYLSHLNEDNNT 444
Query: 644 RAIYAHC--SQICDPRVTAGFWAAWKSFEITHGNEDTMREML-RIKRSVQAQYNTQVLFT 700
R ++ S P + WA + +FE G+ ++ ++ R + + +Y +
Sbjct: 445 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETAL 504
Query: 701 FLH 703
+
Sbjct: 505 LVD 507
Score = 65.7 bits (159), Expect = 2e-11
Identities = 39/304 (12%), Positives = 90/304 (29%), Gaps = 27/304 (8%)
Query: 19 PYEEEILRNPFSVKHWLRYIEHKKNAP---------KAIINTIYERSLKELPGSYKLWYN 69
+ + V W +YI+ +K+ P + YE+ L L +WY
Sbjct: 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYE 277
Query: 70 YLKLRRKQVKGKV------ITDPSYEDVNNTFERSL-VFMHKMPRIWLDYGRFLMDQHKI 122
+ + K ++ N +ER++ + K ++ Y + + K
Sbjct: 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337
Query: 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
+ +++R L I V+ Y+ F + ++ +F++ + Y+
Sbjct: 338 EKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396
Query: 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQ--NPDKIRSLNVDAII 240
+ I K + + +S + R L +
Sbjct: 397 ALMEYYCSKDKSVAFKIFEL---GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453
Query: 241 RGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV---TTVRDFTQVFDAYAQ 297
G L ++ G +W + G + + ++ + D Y
Sbjct: 454 SGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKF 511
Query: 298 FEEL 301
+
Sbjct: 512 MDLY 515
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 113 bits (284), Expect = 9e-27
Identities = 56/440 (12%), Positives = 120/440 (27%), Gaps = 91/440 (20%)
Query: 322 IELELRL---ARLEDLMERRLLLLNSVLLRQNPHNVLEWH---KRVRLFDGKPLDIIRTY 375
LE L R L ++ L W + VR K + Y
Sbjct: 21 ARRLYMSKDYRSLESLFGRCLKKSYNLDL---------WMLYIEYVRKVSQKKFKLYEVY 71
Query: 376 TEAVKTVDPKLAVGKLHTLWIEF-GKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
+ + L+ +IE GK + ++E R + +A P + +L W
Sbjct: 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSEL---WK 128
Query: 435 EWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESF 494
++ EL + + + Y ++ S+K + DLE
Sbjct: 129 DFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR---GWSVKNAARLIDLEMEN 185
Query: 495 GT-----------FKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCL 543
G + L + Y +++ Y ++L G + E+A+ + E+ +
Sbjct: 186 GMKLGGRPHESRMHFIHNY--ILDSFYYAEEVYFFYS-EYLIGIG--QKEKAKKVVERGI 240
Query: 544 EACPPRYAKTLY-------------------------------------LLYAKLEEEHG 566
E + Y + + +
Sbjct: 241 EMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300
Query: 567 LARHAMAVYERATGAVLPEEMFE---MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623
++ + +F Y + I+ + P+
Sbjct: 301 GLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATP-----YNIFSSGLLKHPDST- 354
Query: 624 RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683
+ +F ++G+ + ARA++ + W + +E G+ + RE++
Sbjct: 355 -LLKEEFFLFLLRIGDEENARALFKRLEKTSR------MWDSMIEYEFMVGSMELFRELV 407
Query: 684 RIKRSVQAQYNTQVLFTFLH 703
K
Sbjct: 408 DQKMDAIKADAILPPLPPRE 427
Score = 94.5 bits (234), Expect = 2e-20
Identities = 67/457 (14%), Positives = 140/457 (30%), Gaps = 65/457 (14%)
Query: 18 LPYEEEILRNPFSVKHWLRYIEH-KKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRK 76
+ EE++ S + + + + +++ R LK+ + LW Y++ RK
Sbjct: 1 MDAEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRK 59
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPR---IWLDYGRFLM----DQHKITQTRHVF 129
+ +E +L ++ +Y +Q +I + R+ +
Sbjct: 60 -------VSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGY 112
Query: 130 DRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERL 189
RAL+ P+ +W + +F T ++ L +F + Y + I
Sbjct: 113 MRALQ-TPMGSLSELWKDFENFELELN-KITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170
Query: 190 DEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249
+ + L ++ +N K+ ++ + D
Sbjct: 171 -----------------------SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD 207
Query: 250 QLGH---LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQ---VFDAYAQFEELSL 303
+ ++ ++Y I G E+A+ + E I+ + V D A + +L
Sbjct: 208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKR 267
Query: 304 NKRMEEIAENDTPSEEDDIELELRLA----RLEDLMERRLLLLNSVLLRQNPHNVLEWHK 359
M E + ++ L + + L R L + PH +
Sbjct: 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYC-A 326
Query: 360 RVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKAT 419
+ + + P L EF F E+AR +F +
Sbjct: 327 FIEYYATGSRATPYNIFSSGLLKHPDST-----LLKEEFFLFLLRIGDEENARALFKRL- 380
Query: 420 LVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARA 456
E + +W E E G E L+ +
Sbjct: 381 -------EKTSRMWDSMIEYEFMVGSMELFRELVDQK 410
Score = 90.3 bits (223), Expect = 4e-19
Identities = 66/524 (12%), Positives = 139/524 (26%), Gaps = 86/524 (16%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
E + P +++ R L +F R L+ + +W LY+ +V+
Sbjct: 3 AEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY---NLDLWMLYIEYVRK 59
Query: 155 -HAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSN 213
V+ L F + Y Y IE K
Sbjct: 60 VSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE-----------------EEGKIEDEQ 102
Query: 214 HQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARD 273
++ +KIR+ Y L SL++ + FE +
Sbjct: 103 TRI------------EKIRNG------------YMRALQTPMGSLSELWKDFENFELELN 138
Query: 274 IYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLED 333
T+ F F Y Q + + + D+E+E +
Sbjct: 139 KITGKKIVGDTLPIFQSSFQRYQQIQ------PLIRGWSVKNAARLIDLEMENGMKLGGR 192
Query: 334 LMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKL 391
E R+ +++ +L + + G+ + ++ D
Sbjct: 193 PHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMF----- 247
Query: 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV--EDLATVWCEWAELELRAGQEEAA 449
L + +G + D + + KV ++L + L+ E
Sbjct: 248 --LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305
Query: 450 LRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKW 509
+L +E +Y + + + + G+
Sbjct: 306 RKLFIELG----------NEGVGPHVFIYCAFIEYYATGSRATP---YNIFSSGLLKH-- 350
Query: 510 PYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLAR 569
P + + FL R G E AR LF++ + ++ + E G
Sbjct: 351 PDSTLLKEEFF-LFLLRIG--DEENARALFKRLEKTSR------MWDSMIEYEFMVGSME 401
Query: 570 HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYER 613
+ ++ A+ + + + + +
Sbjct: 402 LFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDS 445
Score = 59.9 bits (144), Expect = 2e-09
Identities = 41/348 (11%), Positives = 100/348 (28%), Gaps = 37/348 (10%)
Query: 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYL 71
+ +L + E + + + ++ + S K +
Sbjct: 120 MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLI 179
Query: 72 KLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDR 131
L + K+ P ++ L + ++ Y +L+ + + + V +R
Sbjct: 180 DLE-MENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVER 238
Query: 132 ALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE------DAEDYIEYLSS 185
+ + L + AV R + E I +L+
Sbjct: 239 GIEMSDGMFLSLYYGLVM---DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295
Query: 186 IERLDEA-AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244
+ + + +I V H + + I GL
Sbjct: 296 VLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIE---YYATGSRATPY-----NIFSSGL 347
Query: 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE---- 300
++ D L + +R G E AR +++ +T +++D+ ++E
Sbjct: 348 LKHPDS-TLLKEEFFLFLLRIGDEENARALFKRLEKTS-------RMWDSMIEYEFMVGS 399
Query: 301 ----LSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNS 344
L + + + D + + ++E ++ R L+S
Sbjct: 400 MELFRELVDQKMDAIKAD--AILPPLPPREHNVQMEGILGRYHCFLDS 445
Score = 54.9 bits (131), Expect = 5e-08
Identities = 33/258 (12%), Positives = 85/258 (32%), Gaps = 32/258 (12%)
Query: 469 EAETVQARVYKSIKLWSLYADLEESFGTFKA----YEKGIALFKWPYIFDIWNTYLTKFL 524
+AE S +A +++ + + + K Y D+W Y+ +++
Sbjct: 2 DAEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCL---KKSYNLDLWMLYI-EYV 57
Query: 525 SRYGGTKLERARDLFEQCLEACPPRYAK-TLYLLY----AKLEEEHGLARHAMAVYERAT 579
+ K + +++E L + LY Y K+E+E Y RA
Sbjct: 58 RKVSQKK-FKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRAL 116
Query: 580 GAVLP--EEMFEMFNIYIKKAAEIYG---IPKTRQIYERAIESLPEEPTRQMCLKFAEME 634
+ E+++ F + + +I G + T I++ + + +
Sbjct: 117 QTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAA 176
Query: 635 TKL-----------GEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683
+ G +R + H + + + + I G ++ ++++
Sbjct: 177 RLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVV 236
Query: 684 RIKRSVQAQYNTQVLFTF 701
+R ++ + +
Sbjct: 237 --ERGIEMSDGMFLSLYY 252
Score = 52.2 bits (124), Expect = 4e-07
Identities = 29/212 (13%), Positives = 67/212 (31%), Gaps = 20/212 (9%)
Query: 33 HWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92
+ L Y+ K+ ++ E ++ + S
Sbjct: 291 NHLNYVLKKRGLELFR--KLFIELGNEGV-GPHVFIYCAFIEYYATG-------SRATPY 340
Query: 93 NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFV 152
N F L+ + ++ FL+ R +F R + R+W + +
Sbjct: 341 NIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL------EKTSRMWDSMIEYE 394
Query: 153 KSHAVPETAVRVFRRYLKLFPEDA-EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGK 211
E + + + DA + +++ + ++ +F+ +
Sbjct: 395 FMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIR 454
Query: 212 SNHQLWNELCE---MISQNPDKIRSLNVDAII 240
N +L +E E ISQ + + +L V+ +I
Sbjct: 455 DNSRLLDEFMENLPKISQQNNVLSNLRVEKVI 486
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 101 bits (252), Expect = 2e-22
Identities = 67/610 (10%), Positives = 154/610 (25%), Gaps = 108/610 (17%)
Query: 13 ENEEDLPYEEEILRNPFSVKHWLRYI-EHKKNAPKAIINTIYERSLKELPGSYKLWYNYL 71
E++ + I P + +++ + H + +++ P +W L
Sbjct: 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRL 107
Query: 72 KLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP--RIWLDYGRFLMDQHKITQ----- 124
L +++ + R L +WL Y ++ ++ I
Sbjct: 108 SLEFDKMEEL-----DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEA 162
Query: 125 ---TRHVFDRALRA--LPITQHHRVWPLYLSFVKSHAVP---------ETAVRVFRRYLK 170
F + + + + W YL F++ + ++++ L
Sbjct: 163 RNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222
Query: 171 LFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDK 230
+ E + + E+ +I + N + P
Sbjct: 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282
Query: 231 IRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIR-------SGLFERARDIYEEAIQTVT 283
+ + + Y Q +W + R +Y +A Q
Sbjct: 283 LNQATESNLPKP--NEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ--- 337
Query: 284 TVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLN 343
V +++ A ++ E +T S L+L + + L
Sbjct: 338 HVCFAPEIWFNMANYQG-----------EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSE 386
Query: 344 SVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE 403
L + L + ++ +L KL ++ + +
Sbjct: 387 QYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK-SKLTYVYCVYMNTMK 445
Query: 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR-AGQEEAALRLMARATATPAR 462
L +R IF K + D ++ E A +E + + A +++
Sbjct: 446 RIQGLAASRKIFGKCRRLKKLVTPD---IYLENAYIEYHISKDTKTACKVL--------- 493
Query: 463 PVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522
E + + Y D
Sbjct: 494 --------ELGLKYFATDGEYINKYLDFLIYVN--------------------------- 518
Query: 523 FLSRYGGTKLERARDLFEQCLEACPP-RYAKTLYLLYAKLEEEHGLARHAMAVYERATGA 581
+ + + LFE ++ K ++ E + G + +R
Sbjct: 519 --------EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570
Query: 582 VLPEEMFEMF 591
E F
Sbjct: 571 FPEVNKLEEF 580
Score = 45.8 bits (107), Expect = 4e-05
Identities = 26/247 (10%), Positives = 65/247 (26%), Gaps = 27/247 (10%)
Query: 443 AGQEEAALRLMARATATPARPVAYHDEAETVQARVYK---SIKLWSLYADLEESFGTF-- 497
G ++ M+ + +R D + + + I L+ S +
Sbjct: 25 TGGQQMGRGSMSTSLRPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQ 84
Query: 498 --KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLY 555
+ ++K ++P + +IW L+ + + +CL +L+
Sbjct: 85 VYETFDK--LHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142
Query: 556 LLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAI 615
L Y + + + + I+ K+ + + Y +
Sbjct: 143 LSYITYVRKKNDIITGGEEARNIVIQAF-QVVVDKCAIFEPKSIQFW------NEYLHFL 195
Query: 616 ESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN 675
E + + + R +Y W + +E
Sbjct: 196 EHWKPVNKFE----------EQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQ 244
Query: 676 EDTMREM 682
R +
Sbjct: 245 LTARRHI 251
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 94.7 bits (235), Expect = 2e-21
Identities = 43/318 (13%), Positives = 95/318 (29%), Gaps = 67/318 (21%)
Query: 30 SVKHWLRYIEHKKNAPKAI---------INTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80
V W +YI+ +K+ P + YE+ L L +WY + + K
Sbjct: 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 66
Query: 81 KV------ITDPSYEDVNNTFERSL-VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
++ N +ER++ + K ++ Y + + K + +++R L
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
V+ Y+ F + ++ +F++ + Y+
Sbjct: 127 AIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA---------- 175
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
+ Y +K + I GL++Y D
Sbjct: 176 -LMEYYCSK------------------------DKSVAF-----KIFELGLKKYGDI-PE 204
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVT-TVRDFTQVFDAYAQFEE--------LSLN 304
+ DY R ++E + + + +++ + FE L +
Sbjct: 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264
Query: 305 KRMEEIAENDTPSEEDDI 322
KR + +E +
Sbjct: 265 KRRFTAFREEYEGKETAL 282
Score = 93.6 bits (232), Expect = 5e-21
Identities = 50/301 (16%), Positives = 107/301 (35%), Gaps = 55/301 (18%)
Query: 394 LWIEFGKFYEVN-DQLEDARLIFDKATLVPYTKVEDLAT---VWCEWAELELRAGQEEAA 449
+W ++ ++ + N + ED LI + + L +W E A+ ++ + A
Sbjct: 10 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69
Query: 450 LRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIA 505
M A ++ A + + K++ L+ YAD EES + Y + +A
Sbjct: 70 KGDMNNAKLFSDEAANIYERA--ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127
Query: 506 LFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH 565
+ ++ Y+ KF R G ++ R +F++ E R+ Y+ A +E
Sbjct: 128 IEDIDPTL-VYIQYM-KFARRAEG--IKSGRMIFKKAREDARTRHHV--YVTAALMEYYC 181
Query: 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ 625
A +I+E ++ + P +
Sbjct: 182 SK------DKSVA-----------------------------FKIFELGLKKYGDIP--E 204
Query: 626 MCLKFAEMETKLGEIDRARAIYAHCSQIC--DPRVTAGFWAAWKSFEITHGNEDTMREML 683
L + + + L E + R ++ P + WA + +FE G+ ++ ++
Sbjct: 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264
Query: 684 R 684
+
Sbjct: 265 K 265
Score = 80.1 bits (197), Expect = 2e-16
Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 30/235 (12%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAII---------------NTIYERSLKE-LPGS 63
YE+ +L W ++ + + K + IYER++ L +
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 64 YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP-RIWLDYGRFLMDQHKI 122
L++ Y ++K YE V++ + R L P +++ Y +F I
Sbjct: 99 MLLYFAYADYEESRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 150
Query: 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE---DY 179
R +F +A H V + + A ++F LK + + E Y
Sbjct: 151 KSGRMIFKKAREDARTRHHVYVTAALMEY-YCSKDKSVAFKIFELGLKKYGDIPEYVLAY 209
Query: 180 IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSL 234
I+YLS + + V ++ S + + E + I +
Sbjct: 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF-ESNIGDLASILKV 263
Score = 75.9 bits (186), Expect = 4e-15
Identities = 47/313 (15%), Positives = 100/313 (31%), Gaps = 50/313 (15%)
Query: 294 AYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL--------NSV 345
Y Q+E+ N +E+ + R+ E+ LL+L +
Sbjct: 13 KYIQWEK-----------SNPLRTEDQTLIT----KRVMFAYEQCLLVLGHHPDIWYEAA 57
Query: 346 LLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVN 405
+ +L + + Y A+ T+ K L+ + + E
Sbjct: 58 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-----MLLYFAYADYEESR 112
Query: 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVA 465
+ E I+++ + D V+ ++ + RA ++ + +A
Sbjct: 113 MKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 169
Query: 466 YHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525
+ A ++ K + FK +E G+ + I + Y+ +LS
Sbjct: 170 VYVTAALMEYYCSKDKSV------------AFKIFELGLKKY--GDIPEYVLAYI-DYLS 214
Query: 526 RYGGTKLERARDLFEQCLEAC--PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL 583
+ R LFE+ L + PP + ++ + E G + V +R A
Sbjct: 215 HLN--EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272
Query: 584 PEEMFEMFNIYIK 596
E + + +
Sbjct: 273 EEYEGKETALLVD 285
Score = 59.7 bits (144), Expect = 1e-09
Identities = 30/210 (14%), Positives = 57/210 (27%), Gaps = 43/210 (20%)
Query: 479 KSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDL 538
+ + +W Y E+S + I +R
Sbjct: 6 QQVDMWKKYIQWEKSNPLRTEDQTLIT---------------------------KRVMFA 38
Query: 539 FEQCLEACPP------RYAK------TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586
+EQCL A+ L + + A +YERA +L +
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 587 MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAI 646
M ++ Y K IY R + +PT + +++ + + I R I
Sbjct: 99 M-LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMI 156
Query: 647 YAHCSQICDPRVTAGFWAAWKSFEITHGNE 676
+ + + E +
Sbjct: 157 FKKAREDART--RHHVYVTAALMEYYCSKD 184
Score = 56.2 bits (135), Expect = 1e-08
Identities = 40/246 (16%), Positives = 84/246 (34%), Gaps = 17/246 (6%)
Query: 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLN- 304
+Y +Q L D + A +IYE AI T+ ++ ++ AYA +EE +
Sbjct: 58 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEESRMKY 115
Query: 305 KRMEEIAENDTPSEEDD-----IELELRLARLEDLMERRLLLLNSV-LLRQNPHNVLEWH 358
+++ I E+ D I+ R E + R++ + R H +
Sbjct: 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175
Query: 359 KRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKA 418
+ + +K G + + + + ++ + R++F++
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229
Query: 419 TLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVY 478
E +W + E G + L++ R A Y + + Y
Sbjct: 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT--AFREEYEGKETALLVDRY 287
Query: 479 KSIKLW 484
K + L+
Sbjct: 288 KFMDLY 293
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 80.3 bits (197), Expect = 1e-15
Identities = 93/664 (14%), Positives = 193/664 (29%), Gaps = 237/664 (35%)
Query: 14 NEEDLPYEE--EILRNPFSVKHWLRYIEHKKNAPKAII-NTIYERSLKELPGSYKLWYNY 70
E Y++ + + F + ++ + PK+I+ + + +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 71 LKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFD 130
L KQ ++ F+ ++ RI +Y FLM K T+ R
Sbjct: 69 WTLLSKQ--------------EEMVQK---FVEEVLRI--NYK-FLMSPIK-TEQR---Q 104
Query: 131 RAL-RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERL 189
++ + I Q R++ +VF +Y + L +L
Sbjct: 105 PSMMTRMYIEQRDRLY--------------NDNQVFAKY----------NVSRLQPYLKL 140
Query: 190 DEAAVKLAYIVNKESFVSKHG-----KSNHQLWNELC---EMISQNPDKIRSLNV----- 236
+A ++L V G K+ + ++C ++ + KI LN+
Sbjct: 141 RQALLEL----RPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 237 -DAIIRGGLRRYTDQLGHLWNSLADY-----------------YIRSGLFERA----RDI 274
+ ++ + Q+ W S +D+ ++S +E ++
Sbjct: 195 PETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 275 YEEAI--------QTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326
+ + T R QV D LS ++ + + D L
Sbjct: 254 QNAKAWNAFNLSCKILLTTRF-KQVTDF------LSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 327 RLA-----RLEDLMERRL----LLLNSV--LLRQNPHNVLEWHKRVRLFDGKPLD-IIRT 374
L R +DL L L+ + +R W + + L II +
Sbjct: 307 -LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---W-DNWKHVNCDKLTTIIES 361
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
++ ++P E+ K ++ +L +F + +P T + L+ +W
Sbjct: 362 ---SLNVLEPA-----------EYRKMFD---RLS----VFPPSAHIP-TIL--LSLIWF 397
Query: 435 EWAE-------------------------------LELRA-GQEEAAL--RLMARATATP 460
+ + LEL+ + E AL ++
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 461 ARP----------------VAYH----DEAET-------------VQARVYKSIKLWSLY 487
+ +H + E ++ ++ W+
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 488 ADLEESFGTFKAYEKGIALFKWPYIFDIWNTY------LTKFLSRYGGTKLERAR--DLF 539
+ + K Y+ YI D Y + FL + L ++ DL
Sbjct: 518 GSILNTLQQLKFYKP--------YICDNDPKYERLVNAILDFLPKI-EENLICSKYTDLL 568
Query: 540 EQCL 543
L
Sbjct: 569 RIAL 572
Score = 67.2 bits (163), Expect = 1e-11
Identities = 57/325 (17%), Positives = 100/325 (30%), Gaps = 81/325 (24%)
Query: 1 PESTGFTGIYTTENEEDLPYEEEILRNPFSVK-----------HW--LRYIEHKKNAPKA 47
E Y +DLP E + NP + W +++ K
Sbjct: 301 DEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK----- 354
Query: 48 IINTIYERSLKEL-PGSYKLWYNYLKLRRKQVK--GKVI----TDPSYEDVNNTFERSLV 100
+ TI E SL L P Y+ ++ L + ++ D DV +
Sbjct: 355 -LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV----MVVVN 409
Query: 101 FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP----ITQHHRVWPLYLSFVKSHA 156
+HK L+++ T + L HR S V +
Sbjct: 410 KLHK---------YSLVEKQPKESTISIPSIYLELKVKLENEYALHR------SIVDHYN 454
Query: 157 VPETAVRVFRRY-LKLFPEDAED-----YIEY-LSSIERLDEAA------VKLAYIVNKE 203
+P + + D +I + L +IE + + ++ K
Sbjct: 455 IP-------KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 204 SFVSKHGKSNHQLWNELCEM------ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNS 257
S ++ + N L ++ I N D V+AI+ L + + +L S
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYERLVNAILDF-LPKIEE---NLICS 562
Query: 258 LADYYIRSGLFERARDIYEEAIQTV 282
+R L I+EEA + V
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 48.7 bits (115), Expect = 6e-06
Identities = 64/470 (13%), Positives = 119/470 (25%), Gaps = 198/470 (42%)
Query: 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLK 72
++ ++ S++ LR + K YE L
Sbjct: 218 DHSSNIKLRIH------SIQAELRRLLKSKP---------YENCL--------------- 247
Query: 73 LRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIW--LDYG-RFLMDQHKITQTRHVF 129
++ +V N + W + + L+ T+ + V
Sbjct: 248 ---------LVLL----NVQN------------AKAWNAFNLSCKILL----TTRFKQVT 278
Query: 130 DR--ALRALPITQHHRVWPL-----------YLSFVKSHAVPETAVRVFRRYLKLFPE-- 174
D A I+ H L YL + +P + R L + E
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESI 337
Query: 175 -DAEDYIEYL-------------SSIERLDEAAVKLAY---------------------- 198
D + SS+ L+ A + +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 199 ---------IVN---KESFVSKHGKSN----HQLWNELCEMISQNPDKIRSLNVDAIIRG 242
+VN K S V K K + ++ EL + RS+
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-------- 449
Query: 243 GLRRYTDQLGHLWNSLA----DYYI------------RSGLFERARDIY------EEAIQ 280
+ Y + L D Y R ++ E+ I+
Sbjct: 450 -VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 281 TVTT-------VRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLED 333
+T + + Q Y + I +ND + E + + D
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPY-----------ICDNDP-------KYERLVNAILD 550
Query: 334 LMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVD 383
+ + + L+ ++L R+ L + I + EA K V
Sbjct: 551 FLPK----IEENLICSKYTDLL----RIALMA--EDEAI--FEEAHKQVQ 588
Score = 46.4 bits (109), Expect = 3e-05
Identities = 78/530 (14%), Positives = 154/530 (29%), Gaps = 143/530 (26%)
Query: 213 NHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERAR 272
+H + E E Q D I S+ DA + + + + L+ E
Sbjct: 4 HHHMDFETGEHQYQYKD-ILSVFEDAFVDNFDCKDVQDM--PKSILSK--------EEID 52
Query: 273 DIYEEAIQTVTTVRDFTQVFD----AYAQFEELSLNKR----MEEIA-ENDTPSEEDDIE 323
I T+R F + +F E L M I E PS +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 324 LELR--------------LARLEDLMERRLLLLNSVLLRQNPHNVLEWH------KRVRL 363
+E R ++RL+ ++ R LL LR + ++ K +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---LRPAKNVLI--DGVLGSGKTW-V 166
Query: 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY 423
LD+ +Y V+ K+ W+ LE + + + +
Sbjct: 167 ----ALDVCLSY--KVQCKMD----FKIF--WLNLKNCNSPETVLEMLQKLLYQIDP-NW 213
Query: 424 TKVEDLAT---VWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKS 480
T D ++ + + ELR RL+ + Y++
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELR--------RLLKS--------------------KPYEN 245
Query: 481 IKL-----WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERA 535
L + A +F K + ++ + D + T +S L+
Sbjct: 246 CLLVLLNVQN--AKAWNAFN-LSC--KILLTTRFKQVTDFLSAATTTHIS------LDHH 294
Query: 536 RDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNI-- 593
P K+L L Y + L R + R +++ E + +
Sbjct: 295 SMTLT-------PDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRL-SIIAESIRDGLATWD 345
Query: 594 YIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653
K K I E ++ L R+M F + +++ + I
Sbjct: 346 NWKH----VNCDKLTTIIESSLNVLEPAEYRKM---FDRL-----------SVFPPSAHI 387
Query: 654 CDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLFTFLH 703
+ + W ++ + ++ K S+ + + + +
Sbjct: 388 -PTILLSLIWFDVIKSDV----MVVVNKL--HKYSLVEKQPKESTIS-IP 429
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 5e-09
Identities = 62/315 (19%), Positives = 112/315 (35%), Gaps = 111/315 (35%)
Query: 29 FSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQ-VKGKVITDPS 87
FS+ + N P + TI+ ++ NY + + V GK+ T+
Sbjct: 1659 FSILDIVI------NNPVNL--TIHFGG----EKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 88 YEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWP- 146
++++N S F ++ ++ T+ TQ P
Sbjct: 1707 FKEINEHS-TSYTFRS--------------EKGLLSATQF-----------TQ-----PA 1735
Query: 147 LYLSFVKSHAVPETAVRVFRRYLK---LFPEDAEDYI------EY--LSSI-ERLD-EAA 193
L + A F LK L P DA EY L+S+ + + E+
Sbjct: 1736 L---TLMEKAA-------FED-LKSKGLIPADA--TFAGHSLGEYAALASLADVMSIESL 1782
Query: 194 VKLAYI----VNKESFVSKHGKSNHQLWNELCEMISQNPDKIR-SLNVDAIIRGGLRRYT 248
V++ + + + G+SN+ MI+ NP ++ S + +A L+
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYG-------MIAINPGRVAASFSQEA-----LQYVV 1830
Query: 249 DQLGHLWNSL---ADY------YIRSGLFERARDIYEEAIQTVTTVRDF--TQVFDAYAQ 297
+++G L +Y Y+ +G D+ A+ TVT V +F Q D
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYVAAG------DL--RALDTVTNVLNFIKLQKID---- 1878
Query: 298 FEELSLNKRMEEIAE 312
EL + +EE+
Sbjct: 1879 IIELQKSLSLEEVEG 1893
Score = 57.4 bits (138), Expect = 2e-08
Identities = 73/447 (16%), Positives = 115/447 (25%), Gaps = 155/447 (34%)
Query: 289 TQVFDAYAQFEE---LSLNKRMEEIAENDTPSEEDDIELELR-LARLEDLME-----RRL 339
T F +Q +E L + E A +D P+ EL + L + L+E +
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPT--TPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 340 LLLNSVL-------LRQNP-HNV---LEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAV 388
+LN L L N H + L L K ++I+ Y A
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL--VKTKELIKNYITARIMAKRPFDK 139
Query: 389 GKLHTLWIEFGKFYEVNDQLEDARL--IFDKATLVPYTKVEDLATVWCEWAELELRAGQ- 445
L F V + +A+L IF GQ
Sbjct: 140 KSNSAL------FRAVGE--GNAQLVAIF---------------------------GGQG 164
Query: 446 ------EEAALRLMARATATPARPVAYHDEAETVQARVYKSIK-LWSLYADLEESFGTFK 498
EE LR + Y V + S + L L ++ K
Sbjct: 165 NTDDYFEE--LRDL------------YQTYHVLVGDLIKFSAETLSELIRTTLDA---EK 207
Query: 499 AYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLY 558
+ +G+ + +W LE P + YLL
Sbjct: 208 VFTQGLNILEW----------------------LENP--------SNTPDKD----YLLS 233
Query: 559 A----KLEEEHGLARHAMAVYE---RATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIY 611
L G+ +A Y + G P E+ + + +
Sbjct: 234 IPISCPL---IGVI--QLAHYVVTAKLLG-FTPGELRSYLKGATGHSQGL--------VT 279
Query: 612 ERAIESLPEEPT-RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFE 670
AI + K + +G R P + +
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIG----VR------CYEAYPNTS--LPPSILEDS 327
Query: 671 ITHGNEDTMREMLRIKRSVQAQYNTQV 697
+ + E ML I Q Q V
Sbjct: 328 LENN-EGVPSPMLSISNLTQEQVQDYV 353
Score = 42.3 bits (99), Expect = 6e-04
Identities = 78/529 (14%), Positives = 148/529 (27%), Gaps = 189/529 (35%)
Query: 25 LRNPFSVKHWLRYIEHKKNAPKAI---INTIYERSLKELPGSYK-------------LWY 68
R P ++ H +EH P A + + E+ K LP + L
Sbjct: 6 TR-PLTLSH--GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 69 NYLKLRRKQVKGKVITDPSYEDVN----NTFERSLVFM-----H----KMPRIWLDYGRF 115
+L V+ ++ V FE ++ H K+ +
Sbjct: 63 KFLGYVSSLVEPS--KVGQFDQVLNLCLTEFENC--YLEGNDIHALAAKLLQE------- 111
Query: 116 LMDQHKITQTRHVFDRALRAL-----PITQHHRVWPLYLSFVKSHAVPETAVRVF----- 165
+ + +T+ + + A P + L+ AV E ++
Sbjct: 112 --NDTTLVKTKELIKNYITARIMAKRPFDKKSNS-ALF------RAVGEGNAQLVAIFGG 162
Query: 166 ----RRYLKLFPEDAEDYIEYLSSIERL-DEAAVKLAYIVNKESFVSK---HGKSNHQLW 217
Y F E + Y Y + L +A L+ ++ K G + + W
Sbjct: 163 QGNTDDY---FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-W 218
Query: 218 NELCEMISQNPDKIRSLNVDA-------IIRGGLRRYTDQLGHLWNSLADYYI------- 263
L +NP + +I G+ QL H Y +
Sbjct: 219 --L-----ENPSNTPDKDYLLSIPISCPLI--GVI----QLAH-------YVVTAKLLGF 258
Query: 264 --------RSGLFERARDIYE-EAIQTVTTVRDFTQVFDAY----------AQ--FEELS 302
G ++ + AI + F + S
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 303 LNKRM-EEIAEND--TPSE----EDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVL 355
L + E+ EN+ PS + L +++D + + N H L
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISN-----LTQEQVQDYVNKT-----------NSH--L 360
Query: 356 EWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARL 413
K+V L +G + V + P+ L+ L + K + L+ +R+
Sbjct: 361 PAGKQVEISLVNGA-----KNL---VVSGPPQ----SLYGLNLTLRK-AKAPSGLDQSRI 407
Query: 414 IFDKATL----------VPY----------TKVEDLATVWCEWAELELR 442
F + L P+ +DL + +++
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Score = 38.1 bits (88), Expect = 0.012
Identities = 45/247 (18%), Positives = 72/247 (29%), Gaps = 68/247 (27%)
Query: 113 GRFLMDQHKITQTRHVFDRALRALP------ITQHHRVWPLYLSFVKSHAVPETAVRVFR 166
G L K + V++RA I P+ L+ H E R+
Sbjct: 1632 GMDLYKTSKAA--QDVWNRADNHFKDTYGFSILDIVINNPVNLTI---HFGGEKGKRIRE 1686
Query: 167 RYLKLFPEDAED-YIEYLSSIERLDEAAVKLAYIVNKESFVSKHGK----SNHQ------ 215
Y + E D ++ + ++E + +F S+ G Q
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSY-------TFRSEKGLLSATQFTQPALTLM 1739
Query: 216 ---LWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERAR 272
+ +L D A GH SL +Y + L A
Sbjct: 1740 EKAAFEDLKSKGLIPADA-----TFA-------------GH---SLGEY---AALASLAD 1775
Query: 273 DI-YEEAIQTVTTVR-DFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLAR 330
+ E ++ V R Q A + E N M IA N P +
Sbjct: 1776 VMSIESLVEVV-FYRGMTMQ--VAVPRDELGRSNYGM--IAIN--PGR---VAASFSQEA 1825
Query: 331 LEDLMER 337
L+ ++ER
Sbjct: 1826 LQYVVER 1832
Score = 33.5 bits (76), Expect = 0.30
Identities = 35/218 (16%), Positives = 60/218 (27%), Gaps = 93/218 (42%)
Query: 503 GIALFK-WPYIFDIWNTYLTKFLSRYGGTKLERARD-------LFEQCLEACPPRYAKTL 554
G+ L+K D+WN F YG + L+ + F K +
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF-------GGEKGKRI 1684
Query: 555 YLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK-----TR- 608
Y+ + E G + E++F+ N + + K T+
Sbjct: 1685 RENYSAMIFETI-----------VDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQF 1731
Query: 609 -Q--IY--ERAIESLPEEPTRQMCLKFAEMETK-------------LGEIDRARAIY-AH 649
Q + E+A F ++++K LGE Y A
Sbjct: 1732 TQPALTLMEKAA--------------FEDLKSKGLIPADATFAGHSLGE-------YAAL 1770
Query: 650 CSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKR 687
S A S E + ++ R
Sbjct: 1771 AS-------LADVM----SI------ESLVE-VVF-YR 1789
Score = 29.2 bits (65), Expect = 5.5
Identities = 31/152 (20%), Positives = 44/152 (28%), Gaps = 56/152 (36%)
Query: 42 KNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNT-F-ERSL 99
N K ++ + +SL L L LR K K PS D + F ER L
Sbjct: 371 VNGAKNLVVSGPPQSLYGLN---------LTLR----KAKA---PSGLDQSRIPFSERKL 414
Query: 100 VFMHK----------------MPRIWLDYGR----FLMDQHKITQTRHVFD----RALRA 135
F ++ I D + F +I V+D LR
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP----VYDTFDGSDLRV 470
Query: 136 LP----------ITQHHRVWPLYLSFVKSHAV 157
L I + W F +H +
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle
checkpoint, TPR motif, all-alpha domain, MAD3-like
domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Length = 202
Score = 43.1 bits (101), Expect = 1e-04
Identities = 22/183 (12%), Positives = 46/183 (25%), Gaps = 51/183 (27%)
Query: 403 EVNDQLEDARLIFDKATLVPYTKVEDLATVWCE---WAELELRAGQEEAA----LRLMAR 455
E + QL ++ +++ L ++D ++ + W E+ M R
Sbjct: 3 EQHSQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMER 62
Query: 456 ATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDI 515
Y ++ + +K+W Y +L S
Sbjct: 63 CLIYIQDMETYRNDP--------RFLKIWIWYINLFLS---------------------- 92
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
+ + F+ Y ++KL E A +
Sbjct: 93 --------------NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138
Query: 576 ERA 578
E
Sbjct: 139 ELG 141
Score = 31.6 bits (71), Expect = 0.59
Identities = 10/78 (12%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEE 309
+L + + + F A+ + E + R + ++ + + +E+ R+ E
Sbjct: 113 KLSLFYEEFSKLLENAQFFLEAKVLLELGAE--NNCRPYNRLLRSLSNYED-----RLRE 165
Query: 310 IAENDTPSEEDDIELELR 327
+ + + D L+
Sbjct: 166 MNIVENQNSVPDSRERLK 183
Score = 29.2 bits (65), Expect = 3.4
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLM 453
+WI + + ++ ++ F + L+ + E+++L A A L+
Sbjct: 82 IWIWYINLFL-SNNFHESENTFKY--MFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138
Query: 454 ARATATPARPV 464
RP
Sbjct: 139 ELGAENNCRPY 149
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 42.6 bits (100), Expect = 4e-04
Identities = 54/277 (19%), Positives = 98/277 (35%), Gaps = 22/277 (7%)
Query: 380 KTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAEL 439
+++ L K H W + D ED +F + E AT+ A L
Sbjct: 7 NSLESSLRQLKCHFTW-NLMEGENSLDDFEDK--VFYRTEFQNR---EFKATMCNLLAYL 60
Query: 440 ELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYA--DLEESFGTF 497
+ GQ EAAL + +A + H + +++ V W Y L +
Sbjct: 61 KHLKGQNEAALECLRKAEELIQQ---EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 498 KAYEKGIALFKWPYIFDIWNTYLTK--FLSRYGGTKLERARDLFEQCLEACP--PRYAKT 553
+ F PY + + + GG + ERA+ FE+ LE P P +
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177
Query: 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFN---IYIKKAAEIYGIPKTRQI 610
L + +L+ +++A+ +A + P+ + K E + ++
Sbjct: 178 LAIASYRLDNW-PPSQNAIDPLRQAI-RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235
Query: 611 YERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
E A+E P + A+ + E D+A +
Sbjct: 236 VEEALEKAPGVT--DVLRSAAKFYRRKDEPDKAIELL 270
Score = 29.9 bits (67), Expect = 3.0
Identities = 49/374 (13%), Positives = 100/374 (26%), Gaps = 55/374 (14%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIE---HKKNAPKAIIN-TIYERSLKELPGSYKLWY-- 68
EE + E S+ W Y H I + ++ Y++
Sbjct: 78 EELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137
Query: 69 -------NYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYG---RFLMD 118
LK Q E FE++L K P L +
Sbjct: 138 LDCEEGWTRLKCGGNQ----------NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN 187
Query: 119 QHKITQTRHVFDRALRALPITQHHRVWPL----YLSFVKSHAVPETAVRVFRRYLKLFPE 174
+A+R P + + L + ++ L+ P
Sbjct: 188 WPPSQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245
Query: 175 DAEDYI---EYLSSIERLDEA--AVKLAYIVNKESFVSKHG-----KSNHQLWNELCEMI 224
+ ++ + D+A +K A + ++ L E
Sbjct: 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG 305
Query: 225 SQNPDKIRSLNVDAI--IRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282
K+ L A+ ++ + L + + LA + + +E A +++
Sbjct: 306 MYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364
Query: 283 TTVRDFTQVFDAYAQFEELSLNKRMEEIA--ENDTPSEEDDIELELRLARLEDLMERRLL 340
T + Y F+ + + I + E E +L+ + + R
Sbjct: 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMR-- 422
Query: 341 LLNSVLLRQNPHNV 354
L +N +
Sbjct: 423 ------LSKNGADS 430
Score = 28.4 bits (63), Expect = 9.9
Identities = 26/248 (10%), Positives = 64/248 (25%), Gaps = 67/248 (27%)
Query: 46 KAIINTIYERSLKELPGSYKLWYNY-LKLRRKQVKGKVITDPSYEDVNNT---------- 94
KAI + +++L+ +P + L R K + + +
Sbjct: 265 KAI--ELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR-ALPITQHHRVWPLYLSFVK 153
+++ + R+ + + + F + L + Y +F
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382
Query: 154 SHA-VPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKS 212
+ A+ F +K+ + E K
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSRE-------------------------------KEKM 411
Query: 213 NHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERAR 272
+L +S+N + +A + LA + ++A
Sbjct: 412 KDKLQKIAKMRLSKNGA-----DSEA----------------LHVLAFLQELNEKMQQAD 450
Query: 273 DIYEEAIQ 280
+ E ++
Sbjct: 451 EDSERGLE 458
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 36.4 bits (84), Expect = 0.024
Identities = 33/231 (14%), Positives = 62/231 (26%), Gaps = 30/231 (12%)
Query: 443 AGQEEAALRLMARATATPARPVA-----YHDEAETVQ--ARVYKSIKLWSLYADLEESFG 495
A + A +A+A Y A A +K+ K D
Sbjct: 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKD------ 57
Query: 496 TFKAYEKGIALF-KWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP----PRY 550
AY + +F + + ++ A E+ P
Sbjct: 58 ---AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114
Query: 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG----IPK 606
A KL E L++ A+ +Y++A EE I KA+ + +
Sbjct: 115 AAMALDRAGKLMEPLDLSK-AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173
Query: 607 TRQIYERAIESLPEEPTR----QMCLKFAEMETKLGEIDRARAIYAHCSQI 653
++ E + C+ ++ + A+ I
Sbjct: 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
Score = 28.3 bits (63), Expect = 9.3
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQ 280
+ +R F+ A ++
Sbjct: 158 IGKASRLLVRQQKFDEAAASLQKEKS 183
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 34.5 bits (79), Expect = 0.050
Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 8/140 (5%)
Query: 443 AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----K 498
E R A+ P A + ++ + W+L + +
Sbjct: 6 VRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLL 65
Query: 499 AYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLY 558
AY + + L +++ T + + R + ++ L L LL
Sbjct: 66 AYRQALQLR--GENAELYAALATVLYYQASQHMTAQTRAMIDKALAL-DSNEITALMLL- 121
Query: 559 AKLEEEHGLARHAMAVYERA 578
A A+ ++++
Sbjct: 122 ASDAFMQANYAQAIELWQKV 141
Score = 29.8 bits (67), Expect = 2.1
Identities = 12/121 (9%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 20 YEEEILRNPFSVKHWL---RYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRK 76
+++I NP + + W Y + + ++ Y ++L+ + +L+ +
Sbjct: 33 LQDKIRANPQNSEQWALLGEYYLWQNDYSNSL--LAYRQALQLRGENAELYAALATVLYY 90
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136
Q + +++L + Q Q ++ + +
Sbjct: 91 QASQHM-----TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145
Query: 137 P 137
Sbjct: 146 S 146
Score = 28.7 bits (64), Expect = 4.2
Identities = 10/97 (10%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHR 143
+ + E + + + W G + + Q+ + + + +AL+ ++
Sbjct: 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAE 79
Query: 144 VWPLY---LSFVKSHAVPETAVRVFRRYLKLFPEDAE 177
++ L + S + + + L L +
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT 116
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 35.6 bits (82), Expect = 0.063
Identities = 38/316 (12%), Positives = 84/316 (26%), Gaps = 60/316 (18%)
Query: 7 TGIYTTENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTI-YERSLKELPGSYK 65
T + L Y + ++ +K + + Y S+ L S
Sbjct: 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSD 306
Query: 66 LWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQT 125
L + + + DV + L ++ + L + + +
Sbjct: 307 LLLCKADTLFVRSR--------FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358
Query: 126 RHVFDRALRALPITQHHRVWP---LYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
+ + + P + W +Y V A R F + + P+ +I +
Sbjct: 359 YLISNDLVDRHP--EKAVTWLAVGIYYLCVNKI---SEARRYFSKSSTMDPQFGPAWIGF 413
Query: 183 ---LSSIERLDEA------AVKLAYIVNKESFVSKHGK---------------------- 211
+ D+A A +L + + +
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARL----FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469
Query: 212 ---SNHQLWNEL---CEMISQNPDKIRSLNVDAI-IRGGLRRYTDQLGHLWNSLADYYIR 264
+ L NEL S I +A+ + + W +L Y +
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQ-NALLLVKKTQSNEKPWAATWANLGHAYRK 528
Query: 265 SGLFERARDIYEEAIQ 280
+++ A D + +
Sbjct: 529 LKMYDAAIDALNQGLL 544
Score = 29.4 bits (66), Expect = 4.9
Identities = 21/204 (10%), Positives = 52/204 (25%), Gaps = 31/204 (15%)
Query: 106 PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165
+ G+ + + + + AL + + + +S A E + +
Sbjct: 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDA--KCYEAFDQLVSNHLLTADEEWDLVLK 257
Query: 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWN------E 219
Y EDA +L + S ++ KS+ L
Sbjct: 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317
Query: 220 LC----------EMISQNPDKIRSLNVDAIIRGGLRRYTD--QLGH-----------LWN 256
+++ +P + + + + W
Sbjct: 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377
Query: 257 SLADYYIRSGLFERARDIYEEAIQ 280
++ YY+ AR + ++
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSST 401
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 35.2 bits (81), Expect = 0.082
Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 18/168 (10%)
Query: 53 YERSLKELPGSYKLWYN----YLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108
+++ P + W L + +R L P
Sbjct: 12 LRAAVRHRPQDFVAWLMLADAELGMGD------------TTAGEMAVQRGLALHPGHPEA 59
Query: 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168
GR Q + + + +A A P +H + ++ E A + R
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRA 117
Query: 169 LKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQL 216
+L PE+ + L+ RL + + V++ +
Sbjct: 118 HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165
Score = 34.1 bits (78), Expect = 0.16
Identities = 37/267 (13%), Positives = 57/267 (21%), Gaps = 51/267 (19%)
Query: 407 QLEDARLIFDKA-TLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA-TPARPV 464
L A P W A+ EL G A + R A P P
Sbjct: 4 DGPRELLQLRAAVRHRP-----QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE 58
Query: 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524
A + + ++ P I L L
Sbjct: 59 AVARLG--------------RVRWTQQRHAEAAVLLQQASDAA--PEHPGIALW-LGHAL 101
Query: 525 SRYGGTKLERARDLFEQCLEACP--PRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAV 582
G + E A + + + P P L +L + L + V V
Sbjct: 102 EDAG--QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159
Query: 583 LPEEMFEMFNIY-----IKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK-------F 630
E F + A + I P + L+ F
Sbjct: 160 GAVEPFAFLSEDASAAEQLACARTRA----QAIAASVRPLAPTRVRSKGPLRVGFVSNGF 215
Query: 631 AE------METKLGEIDRAR-AIYAHC 650
+ R + + H
Sbjct: 216 GAHPTGLLTVALFEALQRRQPDLQMHL 242
Score = 33.3 bits (76), Expect = 0.33
Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 11/145 (7%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDY 112
+R L PG + ++R Q + + + +++ + P I L
Sbjct: 46 VQRGLALHPGHPEAVARLGRVRWTQQR--------HAEAAVLLQQASDAAPEHPGIALWL 97
Query: 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172
G L D + + RA + LP L + A+ V ++
Sbjct: 98 GHALEDAGQAEAAAAAYTRAHQLLP---EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154
Query: 173 PEDAEDYIEYLSSIERLDEAAVKLA 197
+E + + AA +LA
Sbjct: 155 VAQGVGAVEPFAFLSEDASAAEQLA 179
Score = 31.7 bits (72), Expect = 0.85
Identities = 14/139 (10%), Positives = 32/139 (23%), Gaps = 40/139 (28%)
Query: 158 PETAVRVFRRYLKLFPEDAEDYIEY---LSSIERLDEAAVKLAYIVNKESFVSKHGKSNH 214
+ R ++ P+D ++ +
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGE--------------------- 43
Query: 215 QLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL-------------WNSLADY 261
+ ++ +P ++ +R +R+ + L L
Sbjct: 44 ---MAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100
Query: 262 YIRSGLFERARDIYEEAIQ 280
+G E A Y A Q
Sbjct: 101 LEDAGQAEAAAAAYTRAHQ 119
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 33.4 bits (76), Expect = 0.18
Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 10/142 (7%)
Query: 498 KAYEKGIALF-KWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA-----CPPRYA 551
++ K K + NTY+ + G A D E ++ R A
Sbjct: 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117
Query: 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGI----PKT 607
+ L LE + A+ YE A ++ + N K A++ + +
Sbjct: 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177
Query: 608 RQIYERAIESLPEEPTRQMCLK 629
IY + I+S Q LK
Sbjct: 178 SDIYSKLIKSSMGNRLSQWSLK 199
Score = 31.1 bits (70), Expect = 1.2
Identities = 12/62 (19%), Positives = 19/62 (30%)
Query: 219 ELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEA 278
E+ E + K A + + AD G + A DIY +
Sbjct: 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184
Query: 279 IQ 280
I+
Sbjct: 185 IK 186
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 32.7 bits (74), Expect = 0.26
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEE 309
+ + A+Y+ GLF++A ++Y++ + + F + Y QF R E
Sbjct: 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKR--MKAKPFLRFQQKYQQFT-----HRWLE 200
Query: 310 IAENDTPSEEDDIE 323
A S + +
Sbjct: 201 FAPQSFSSNTNSVN 214
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 33.0 bits (76), Expect = 0.26
Identities = 38/275 (13%), Positives = 68/275 (24%), Gaps = 69/275 (25%)
Query: 20 YEEEILRNPFSVKHWLRYI---EHKKNAPKAIINTIYERSLKELPGSYKLWYN----YLK 72
+ ++PF +I A + + + + P + W+ YL
Sbjct: 45 TSVVMEKDPFHASCLPVHIGTLVELNKANELF--YLSHKLVDLYPSNPVSWFAVGCYYLM 102
Query: 73 LRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRA 132
+ K E ++ W+ YG + + Q + A
Sbjct: 103 VGHK-----------NEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA 151
Query: 133 LRALPITQHHRVWPLYL--SFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY---LSSIE 187
+ + H LY+ + ++ A R F + L + PED E
Sbjct: 152 AQLMK--GCHLPM-LYIGLEYGLTNNSKL-AERFFSQALSIAPEDPFVMHEVGVVAFQNG 207
Query: 188 RLDEAAV--KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLR 245
A A K L N
Sbjct: 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN--------------------------- 240
Query: 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280
LGH+ L + A D + +A+
Sbjct: 241 ----NLGHVCRKL-------KKYAEALDYHRQALV 264
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 31.6 bits (72), Expect = 0.60
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 224 ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280
I+ N D + + + ++ L LA Y ++ +++A Y+E +Q
Sbjct: 31 IALNID-----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82
Score = 29.3 bits (66), Expect = 2.9
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 38/128 (29%)
Query: 159 ETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWN 218
AV FR+ + L + E Y Y +++++ E + KLA + + + N
Sbjct: 21 GQAVSYFRQTIALNIDRTEMY--YWTNVDKNSEISSKLATEL---------ALAYKKNRN 69
Query: 219 ------ELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERAR 272
E++ + P+ NVD + A+ + G + A
Sbjct: 70 YDKAYLFYKELLQKAPN-----NVDC----------------LEACAEMQVCRGQEKDAL 108
Query: 273 DIYEEAIQ 280
+YE+ +Q
Sbjct: 109 RMYEKILQ 116
Score = 29.3 bits (66), Expect = 3.7
Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 26/192 (13%)
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKA-TLVPYTKVEDLATVW 433
TE + L E Y+ N + A L + + P +
Sbjct: 37 RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-----NNVDCL 91
Query: 434 CEWAELELRAGQEEAALRLMARATA-TPARPVAYHDEAETVQARVYKSIKLWSLYADLEE 492
AE+++ GQE+ ALR+ + A Y E+
Sbjct: 92 EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY-------------YYLTAEQ 138
Query: 493 SFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA- 551
+ K ++ + LS+ T+ E+AR+ ++ + P A
Sbjct: 139 EKKKLETDYKKLSSPT-----KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ 193
Query: 552 KTLYLLYAKLEE 563
KTL + +E
Sbjct: 194 KTLDKILRIEKE 205
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 31.1 bits (69), Expect = 1.0
Identities = 18/163 (11%), Positives = 46/163 (28%), Gaps = 9/163 (5%)
Query: 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVK-LAYIVNKESFVSKHGKSNHQLWNELCEMI 224
+ + L D + + +++DE + + + + + L
Sbjct: 20 KYFHNLHARDLSNIYQ--QCYKQIDETINQLVDSTSPSTIGIEEQVADITSTYKLLSTYE 77
Query: 225 SQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTT 284
S++ + Q+ ++ Y + ++Y
Sbjct: 78 SESNSFDEHIKDLKKNFKQSSDACPQI--DLSTWDKYRTGELTAPKLSELYLNMPTP--E 133
Query: 285 VRDFTQVFDAYAQFEELS--LNKRMEEIAENDTPSEEDDIELE 325
D + L N I + P++EDD+++E
Sbjct: 134 PATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIE 176
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 31.5 bits (71), Expect = 1.1
Identities = 32/257 (12%), Positives = 73/257 (28%), Gaps = 31/257 (12%)
Query: 249 DQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYA---------QFE 299
A I G + A + + A++ + ++++ +
Sbjct: 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT 70
Query: 300 E-LSLNKRMEEIAE-NDTPSEEDDIELEL--------RLARLEDLMERRLLLLNSVLLRQ 349
L+L ++ E++A +D ++ L + E+ L+N L Q
Sbjct: 71 RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130
Query: 350 NPHNVLEWHKRVRLF-----DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV 404
P + R +L + R+ E + + P+ + L L +
Sbjct: 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML----IQCSLA 186
Query: 405 NDQLEDARLIFDKATLVPYTKVED---LATVWCEWAELELRAGQEEAALRLMARATATPA 461
L++AR ++ + ++ G + AA +
Sbjct: 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246
Query: 462 RPVAYHDEAETVQARVY 478
+ AR
Sbjct: 247 ANNHFLQGQWRNIARAQ 263
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 31.3 bits (71), Expect = 1.1
Identities = 20/254 (7%), Positives = 60/254 (23%), Gaps = 36/254 (14%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDY 112
++ P ++ ++ + + ++ + +
Sbjct: 95 LCQAHGLTPQQVVAIASHDGGKQALET--------VQRLLPVLCQAHGLTPEQVVAIASH 146
Query: 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172
+ V +A P + ++ + + V + L
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTP--EQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 173 PEDAEDYIEY---LSSIERLDEA------AVKL----AYIVNKESFVSKHGKSNHQLWNE 219
P+ ++E + A L + + ++ +L
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264
Query: 220 LCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL-------------WNSLADYYIRSG 266
LC+ P ++ ++ ++ + L L L S
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324
Query: 267 LFERARDIYEEAIQ 280
+R + +A
Sbjct: 325 TVQRLLPVLCQAHG 338
Score = 29.7 bits (67), Expect = 3.8
Identities = 23/255 (9%), Positives = 57/255 (22%), Gaps = 38/255 (14%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDY 112
++ P ++ ++ + + ++ +
Sbjct: 129 LCQAHGLTPEQVVAIASHDGGKQALET--------VQALLPVLCQAHGLTPEQVVAIASN 180
Query: 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172
G + + V +A P Q ++ + + V + L
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTP--QQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238
Query: 173 PEDAEDYIEY---LSSIERLDEA------AVKL-----AYIVNKESFVSKHGKSNHQLWN 218
P+ ++E + A L I + L
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLL-P 297
Query: 219 ELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL-------------WNSLADYYIRS 265
LC+ P ++ ++ + + L L L S
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 357
Query: 266 GLFERARDIYEEAIQ 280
+R + +A
Sbjct: 358 ETVQRLLPVLCQAHG 372
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 31.1 bits (70), Expect = 1.3
Identities = 30/253 (11%), Positives = 64/253 (25%), Gaps = 50/253 (19%)
Query: 36 RYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTF 95
+ + ++ K + E L + K +
Sbjct: 76 KQQDVQEEMEKTLQQ--MEEVLGSAQVEAQALMLKGKALNVTPD-------YSPEAEVLL 126
Query: 96 ERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH 155
+++ ++ W G + +T F AL ++ LS V
Sbjct: 127 SKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSL-QNLSMVL-- 180
Query: 156 AVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQ 215
R L+ D E + S+ + A V++ G+S +
Sbjct: 181 -----------RQLQTDSGD-EHSRHVMDSVRQAKLA-VQMD---------VLDGRSWYI 218
Query: 216 LWNELCEMISQNPDKIRSLNVDAI--------IRGGLRRYTDQLGHLWNSLADYYIRSGL 267
L N + + A+ + D L + A +
Sbjct: 219 LGNAYLSLYFNTGQNPKISQ-QALSAYAQAEKVDRKASSNPD----LHLNRATLHKYEES 273
Query: 268 FERARDIYEEAIQ 280
+ A + + +A
Sbjct: 274 YGEALEGFSQAAA 286
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 31.2 bits (70), Expect = 1.5
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312
+W+ LA ++ G+ + A D Y +A + +V A + ++A
Sbjct: 1106 AVWSQLAKAQLQKGMVKEAIDSYIKADDP----SSYMEVVQAANTSGNWEELVKYLQMAR 1161
Query: 313 NDTPSEEDDIELELRLARLEDLME 336
+ EL LA+ L E
Sbjct: 1162 KKARESYVETELIFALAKTNRLAE 1185
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory
for structural genomics, secsg, protein structure
initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP:
a.25.1.1
Length = 175
Score = 30.1 bits (67), Expect = 1.9
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFN 592
AR+ ++ E K A+ E++H +Y + E
Sbjct: 33 IGAREFYKSLAEKIKIEALKEKINWLAEEEKKH--EALLRKLYSQMFPGKEVVFPKEHIG 90
Query: 593 IYIKKAAEIYGIP---------------KTRQIYERAIESLPEEPTRQMCLKFAEME 634
++ A + Y + E + EE +++ A+ME
Sbjct: 91 PELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRLMRYLADME 147
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.1
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 18/45 (40%)
Query: 54 ERSLKELPGSYKLWYNYLKLRRKQVKGKVITD--PSYEDVNNTFE 96
+++LK+L S KL Y D P+ + T E
Sbjct: 19 KQALKKLQASLKL-YA--------------DDSAPALA-IKATME 47
Score = 29.1 bits (64), Expect = 2.7
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 14/37 (37%)
Query: 445 QE----EAALRLMARATATPARPVAYHDEAETVQARV 477
Q +A+L+L A +A PA +A ++A +
Sbjct: 20 QALKKLQASLKLYADDSA-PA--LA-------IKATM 46
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 29.5 bits (66), Expect = 2.2
Identities = 17/107 (15%), Positives = 28/107 (26%), Gaps = 7/107 (6%)
Query: 88 YEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ--HHRVW 145
YED + F+ V H R +L G + H +
Sbjct: 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96
Query: 146 PLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEA 192
L + A +L E + E + + + EA
Sbjct: 97 ECLLQXGE----LAEAESGLFLAQELIANXPE-FXELSTRVSSMLEA 138
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 30.5 bits (68), Expect = 2.5
Identities = 36/256 (14%), Positives = 87/256 (33%), Gaps = 26/256 (10%)
Query: 428 DLATVWCEWAELELRAGQEEAALRLMARATA-TPARPVAYHDEAETVQARVYKSIKLWSL 486
A A ++ G E A+RL +A P A+ + A +Q +
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ---------- 56
Query: 487 YADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC 546
L+E+ Y++ I + P D ++ + L ++ A + + ++
Sbjct: 57 -GKLQEA---LMHYKEAIRI--SPTFADAYSN-MGNTLKEMQ--DVQGALQCYTRAIQ-I 106
Query: 547 PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
P +A L A + ++ G A+A Y A + P+ N+ +
Sbjct: 107 NPAFADAHSNL-ASIHKDSGNIPEAIASYRTAL-KLKPDFPDAYCNLAHCL-QIVCDWTD 163
Query: 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRA--RAIYAHCSQICDPRVTAGFWA 664
+ ++ + + ++ + + L + +AI +C ++
Sbjct: 164 YDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKP 223
Query: 665 AWKSFEITHGNEDTMR 680
++ + ++ +R
Sbjct: 224 PYEHPKDLKLSDGRLR 239
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F
2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Length = 113
Score = 28.7 bits (64), Expect = 2.6
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 165 FRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYI 199
K E A+ +E LSSI ++ LA I
Sbjct: 41 LNSVEKCDAESAQKVVEELSSIISREDVRAVLASI 75
>3lkd_A Type I restriction-modification system methyltransferase subunit;
Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics,
PSI-2; 2.25A {Streptococcus thermophilus}
Length = 542
Score = 30.4 bits (69), Expect = 2.7
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 267 LFERARDIYEEA-IQTVTTVRDFTQVFDAYAQFEEL---SLNKRMEEIAEND-------- 314
F A +++ Q + T ++ +AY E++ + EEI END
Sbjct: 415 YFIDASKEFDKGKNQNIMTDAHIEKILNAYKSREDIDKFAHLASFEEIVENDYNLNIPRY 474
Query: 315 --TPSEEDDIELELRLARLEDLMERR 338
T EE+ L +A++
Sbjct: 475 VDTFEEEEVEPLTEIVAKINQTNATI 500
>3khk_A Type I restriction-modification system methylation subunit;
structural genomics, PSI-2, protein structure
initiative; 2.55A {Methanosarcina mazei}
Length = 544
Score = 30.1 bits (68), Expect = 2.8
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 272 RDIYEEAIQT-VTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND---TPS-------EED 320
RD +E IQ T ++ Q + + + I +ND TP EED
Sbjct: 477 RDFKDEDIQKLADTFHNWQQEWSEENNQAGFCFSADLALIRKNDFVLTPGRYVGAEAEED 536
Query: 321 DIEL 324
+
Sbjct: 537 EGHH 540
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 30.1 bits (68), Expect = 3.0
Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 45/145 (31%)
Query: 159 ETAVRVFRRYLKLFPEDAEDYIEY---LSSIERLDEA------AVKL------AYIVNKE 203
+ +F + FPE E + L+ D+A A++L Y V
Sbjct: 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY-VGIA 413
Query: 204 SFVSKHGKSNHQLWN-------ELCEM-ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLW 255
V K L E +P + A
Sbjct: 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-----SEQA----------------K 452
Query: 256 NSLADYYIRSGLFERARDIYEEAIQ 280
LA ++ + A ++EE+
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEESAD 477
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA
splicing factor, RNA recognition motif, RNA binding
protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Length = 172
Score = 29.1 bits (66), Expect = 3.5
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 362 RLFDGKPLDIIRTYTEAVKTVDPKLAVGKLH------TLWIEFGKFYEVNDQLEDARLIF 415
+F G+ L I R + KL +G L + F + + L+
Sbjct: 73 IIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPL----KAFNLVK 128
Query: 416 DKAT 419
D AT
Sbjct: 129 DSAT 132
>2p19_A Transcriptional regulator; bacterial regulatory protein, GNTR
family, MCSG, structural PSI-2, protein structure
initiative; 2.10A {Corynebacterium glutamicum} SCOP:
d.190.1.2
Length = 149
Score = 28.8 bits (65), Expect = 3.6
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 359 KRVRLFDGKPLDIIRTY--TEAVKTVDPKLAVGKLHTLWIEFG 399
+R+R P+ I+ Y +L G L+ G
Sbjct: 40 RRLRSTGDIPVAILENYLPPAFNDVSLDELEKGGLYDALRSRG 82
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 29.4 bits (67), Expect = 4.4
Identities = 28/247 (11%), Positives = 75/247 (30%), Gaps = 52/247 (21%)
Query: 51 TIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110
+ ++ P + + + + + + + ++ + +
Sbjct: 20 RHCMQLWRQEPDNTGVLLLLSSIHFQC--RR------LDRSAHFSTLAIKQNPLLAEAYS 71
Query: 111 DYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA-VPETAVRVFRRYL 169
+ G ++ ++ + + ALR P + + L+ A E AV+ + L
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKP--DFIDGY-INLAAALVAAGDMEGAVQAYVSAL 128
Query: 170 KLFPEDAEDYIEY---LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQ 226
+ P+ + L ++ RL+EA K ++ + I
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEA---------KACYL---------------KAIET 164
Query: 227 NPDKIRSLNVDAIIRGGLRRYTDQLGHL-------------WNSLADYYIRSGLFERARD 273
P+ + + + + H + +L + + +F+RA
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224
Query: 274 IYEEAIQ 280
Y A+
Sbjct: 225 AYLRALS 231
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 4.5
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 305 KRMEEIAENDTPSEEDDIELELRLAR-LEDLMERR 338
++ + + E D S+ + E + + LE+ +R+
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus,
protein transport, translocation, transport, transport
protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Length = 661
Score = 29.6 bits (66), Expect = 4.7
Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 17/130 (13%)
Query: 196 LAYIVNKESFVSKHGKS--NHQLWNELCEMISQNP--------DKIRSLNVDAIIRGGLR 245
L + +K+ + + GK Q + +N +KI+S +D ++ +
Sbjct: 82 LESMKSKDINIVEVGKQYLEQQFLQYTDNLYKKNMNEGLATNVNKIKSF-IDTKLKKADK 140
Query: 246 RYTDQLGHLWNS-----LADYYIRSGLFERARDIYEEAIQTVTTV-RDFTQVFDAYAQFE 299
+ + N L Y +R+GL + A + E + V + F F AYA +
Sbjct: 141 SWKISNLTVINGVPIWALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSK 200
Query: 300 ELSLNKRMEE 309
+ L
Sbjct: 201 DHGLPVEYST 210
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 28.9 bits (64), Expect = 5.0
Identities = 30/184 (16%), Positives = 52/184 (28%), Gaps = 41/184 (22%)
Query: 112 YGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKL 171
+ +L + DR + + + S P+ A+R + L
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130
Query: 172 FPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKI 231
I L ++RLD A EL +M Q+ D
Sbjct: 131 ECMAMTVQI--LLKLDRLDLA------------------------RKELKKMQDQDEDAT 164
Query: 232 RSLNVDAII--RGGLRRYTD-------------QLGHLWNSLADYYIRSGLFERARDIYE 276
+ A + G + D L N A ++ G +E A + +
Sbjct: 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224
Query: 277 EAIQ 280
EA+
Sbjct: 225 EALD 228
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU
genomics, PSI-2, protein structure initiative; 2.29A
{Lactobacillus brevis atcc 367}
Length = 296
Score = 28.7 bits (65), Expect = 5.9
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 595 IKKAAEIYGIPKTRQIYERAIE 616
IK+ A++ G K ++IY +
Sbjct: 272 IKEVAKLRGAKK-QEIYRQYHH 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle,
transferase, spindle assembly checkpoint, mitosi repeat,
KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Length = 152
Score = 27.9 bits (62), Expect = 6.7
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280
L+ + A + G + A + + IQ
Sbjct: 99 LSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 28.9 bits (65), Expect = 7.4
Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 22/137 (16%)
Query: 159 ETAVRVFRRYLKLFPEDAEDYIEY---LSSIERLDEA------AVKL-----AYIVNKES 204
+ F FP E + L+ D A A +L V
Sbjct: 361 TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420
Query: 205 FVSKHGKSNHQLWNELCEMISQNPDK-IRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYI 263
+ K Q + ++ + + I+ L A + LA +
Sbjct: 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLT-KAC------ELDPRSEQAKIGLAQLKL 473
Query: 264 RSGLFERARDIYEEAIQ 280
+ + A +++E++
Sbjct: 474 QMEKIDEAIELFEDSAI 490
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 27.4 bits (61), Expect = 7.9
Identities = 3/26 (11%), Positives = 6/26 (23%)
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQ 280
+LA + A +
Sbjct: 88 HAALAVSHTNEHNANAALASLRAWLL 113
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 27.3 bits (61), Expect = 8.2
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQ 280
L +L Y F+ A A+
Sbjct: 21 LRFTLGKTYAEHEQFDAALPHLRAALD 47
Score = 26.9 bits (60), Expect = 9.1
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 15/122 (12%)
Query: 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMF 591
++ + E L + L K EH A+ A P
Sbjct: 1 MQAITERLEAMLAQ-GTDNMLLRFTL-GKTYAEHEQFDAALPHLRAAL-DFDPTYSVAWK 57
Query: 592 NIYIKKAAEIYG----IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
+ + RQ +E + + +Q+ E++ L + R A+
Sbjct: 58 WL-----GKTLQGQGDRAGARQAWESGLAAAQSRGDQQVV---KELQVFLRRLAREDALE 109
Query: 648 AH 649
H
Sbjct: 110 HH 111
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor
suppressor, TPR, apoptosis, cell division, cell cycle,
kinetochore, transferase; 1.80A {Homo sapiens} PDB:
3si5_A
Length = 164
Score = 27.9 bits (62), Expect = 8.5
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEE 309
L + S A+ Y F +A I++E IQ ++ + QF+ R+
Sbjct: 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQ--QKAEPLERLQSQHRQFQA-----RVSR 146
Query: 310 IAENDTPSEEDD 321
EE++
Sbjct: 147 QTLLALEKEEEE 158
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 28.4 bits (64), Expect = 8.6
Identities = 14/138 (10%), Positives = 37/138 (26%), Gaps = 29/138 (21%)
Query: 159 ETAVRVFRRYLKLFPEDAEDYIEY---LSSIERLDEA------AVKL------AYIVNKE 203
A++ + ++ D + + E + +A ++L Y+
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR 184
Query: 204 SFVSKHGKSNHQLWNELCEM-ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262
+ ++ + L E I + L +A YY
Sbjct: 185 ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE-------------LIEANEYIAYYY 231
Query: 263 IRSGLFERARDIYEEAIQ 280
+ +A ++ +
Sbjct: 232 TINRDKVKADAAWKNILA 249
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo
sapiens} PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 28.1 bits (63), Expect = 8.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 7 TGIYTTENEEDLPYEEEILRNPFSVKHW 34
+G+Y+ + DLPY E I PF +
Sbjct: 48 SGLYSNLQQYDLPYPEAIFELPFFFHNP 75
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, transferase; 2.40A {Neisseria meningitidis}
Length = 794
Score = 28.7 bits (64), Expect = 9.0
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF 588
+ R P + + + K+ + G A ++AV AT LP+ F
Sbjct: 85 KEIRQWILDT--PFPEQLDAEIEAAWNKMVADAGGADISVAVRSSATAEDLPDASF 138
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 26.8 bits (60), Expect = 9.2
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 253 HLWNSLADYYIRSGLFERARDIYEEAIQ 280
+LA +++ RA ++EE ++
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVE 35
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural
genomics/proteomics INIT RSGI, structural genomics; HET:
SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Length = 194
Score = 27.9 bits (63), Expect = 9.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 325 ELRLARLEDLMERR----LLLLNSVLLRQNPHNV 354
E R R+E+++ RR +LL +V PHN+
Sbjct: 6 EARRRRIEEVLRRRQPDLTVLLENV---HKPHNL 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,549,635
Number of extensions: 739035
Number of successful extensions: 2495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2191
Number of HSP's successfully gapped: 190
Length of query: 703
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 603
Effective length of database: 3,909,693
Effective search space: 2357544879
Effective search space used: 2357544879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.6 bits)