RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6461
(703 letters)
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa
subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 308
Score = 81.2 bits (199), Expect = 2e-17
Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 20/267 (7%)
Query: 30 SVKHWLRYIEHKKNAP---------KAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80
V W +YI+ +K+ P + YE+ L L +WY + + K
Sbjct: 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 66
Query: 81 KV------ITDPSYEDVNNTFERSL-VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
++ N +ER++ + K ++ Y + + K + +++R L
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
A+ V+ Y+ F + ++ +F++ + Y+ +
Sbjct: 127 -AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
I K + + +S + + + + ++ G
Sbjct: 186 SVAFKI---FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQ 280
+W + G + +
Sbjct: 243 IWARFLAFESNIGDLASILKVEKRRFT 269
Score = 70.0 bits (170), Expect = 1e-13
Identities = 41/264 (15%), Positives = 80/264 (30%), Gaps = 62/264 (23%)
Query: 479 KSIKLWSLYADLEESFG------------TFKAYEKGIALFKWPYIFDIWNTYLTKFLSR 526
+ + +W Y E+S AYE+ L + DIW
Sbjct: 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ--CLLVLGHHPDIWYEAAQYLEQS 63
Query: 527 Y-----------GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
+ A +++E+ + + LY YA EE ++Y
Sbjct: 64 SKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML-LYFAYADYEESRMKYEKVHSIY 122
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP------------- 622
R A+ + ++ Y+K A GI R I+++A E
Sbjct: 123 NRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181
Query: 623 --------------------TRQMCLKFAEMETKLGEIDRARAIYAHCSQIC--DPRVTA 660
+ L + + + L E + R ++ P +
Sbjct: 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241
Query: 661 GFWAAWKSFEITHGNEDTMREMLR 684
WA + +FE G+ ++ ++ +
Sbjct: 242 EIWARFLAFESNIGDLASILKVEK 265
Score = 68.1 bits (165), Expect = 6e-13
Identities = 36/286 (12%), Positives = 85/286 (29%), Gaps = 30/286 (10%)
Query: 63 SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122
+W Y++ + + V +E+ L+ + P IW + ++L K+
Sbjct: 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 66
Query: 123 TQT--------------RHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168
++++RA+ L ++ ++ Y + +S E ++ R
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRL 125
Query: 169 LKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNP 228
L + D R E I K +H +
Sbjct: 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK--AREDARTRHHVYVTAALMEYYCSK 183
Query: 229 DKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT-TVRD 287
DK + + + + + DY R ++E + + +
Sbjct: 184 DKSVAFKIFELGLKKYGDIPE----YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239
Query: 288 FTQVFDAYAQFEE--------LSLNKRMEEIAENDTPSEEDDIELE 325
+++ + FE L + KR + +E + ++
Sbjct: 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVD 285
Score = 48.1 bits (113), Expect = 2e-06
Identities = 40/277 (14%), Positives = 84/277 (30%), Gaps = 37/277 (13%)
Query: 312 ENDTPSEEDDIELELRLARLEDLMERRL--------LLLNSVLLRQNPHNVLEWHKRVRL 363
E P +D L R+ E+ L + + + +L +
Sbjct: 18 EKSNPLRTEDQTLIT--KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNN 75
Query: 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY 423
+ Y A+ T+ K + L+ + + E + E I+++
Sbjct: 76 AKLFSDEAANIYERAISTLLKKNML-----LYFAYADYEESRMKYEKVHSIYNRLL---A 127
Query: 424 TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL 483
+ D V+ ++ + RA ++ + +A D V ++
Sbjct: 128 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---------DARTRHHVYVTAALME 178
Query: 484 WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCL 543
+ D +F F+ K + I +LS + R LFE+ L
Sbjct: 179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID------YLSHLN--EDNNTRVLFERVL 230
Query: 544 EACP--PRYAKTLYLLYAKLEEEHGLARHAMAVYERA 578
+ P + ++ + E G + V +R
Sbjct: 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267
Score = 47.7 bits (112), Expect = 2e-06
Identities = 35/256 (13%), Positives = 80/256 (31%), Gaps = 13/256 (5%)
Query: 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNK 305
+Y +Q L D + A +IYE AI T+ ++ ++ AYA +EE +
Sbjct: 58 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEESRMKY 115
Query: 306 RM-----EEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKR 360
+ + ++ AR + ++ ++ +
Sbjct: 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDARTRHHVYVTA 174
Query: 361 VRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATL 420
+ D + + G + + + + ++ + R++F++
Sbjct: 175 ALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231
Query: 421 VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKS 480
E +W + E G + L++ R + A V YK
Sbjct: 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDR--YKF 289
Query: 481 IKLWSLYADLEESFGT 496
+ L+ A ++ G
Sbjct: 290 MDLYPCSASELKALGY 305
Score = 44.6 bits (104), Expect = 2e-05
Identities = 43/275 (15%), Positives = 91/275 (33%), Gaps = 49/275 (17%)
Query: 394 LWIEFGKFYEVN-DQLEDARLIFDKATLVPYTKVEDLAT---VWCEWAELELRAGQEEAA 449
+W ++ ++ + N + ED LI + + L +W E A+ ++ + A
Sbjct: 10 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69
Query: 450 LRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIA 505
M A ++ A + + K++ L+ YAD EES + Y + +A
Sbjct: 70 KGDMNNAKLFSDEAANIYERA--ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127
Query: 506 LFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA-------------- 551
+ + KF R G ++ R +F++ E R+
Sbjct: 128 IE--DIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 183
Query: 552 -------------------KTLYLLYAKLEEEHGLARHAMAVYERATGAVL--PEEMFEM 590
L Y + ++ER + PE+ E+
Sbjct: 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243
Query: 591 FNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ 625
+ ++ + I + ++ +R + EE +
Sbjct: 244 WARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 278
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 35.2 bits (79), Expect = 0.018
Identities = 27/194 (13%), Positives = 57/194 (29%), Gaps = 8/194 (4%)
Query: 88 YEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPL 147
N F ++L MP ++ G +L FD L T ++
Sbjct: 53 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV-LELDPTYNYAHLNR 111
Query: 148 YLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVS 207
++ + + P D + + ++LDE K + E
Sbjct: 112 GIALYYGGRDKLA-QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170
Query: 208 KHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGL 267
+ N + +++++ D + L L YY+ G
Sbjct: 171 EQWGWNIVEFYLGNISEQTLMERLKADATDNT------SLAEHLSETNFYLGKYYLSLGD 224
Query: 268 FERARDIYEEAIQT 281
+ A +++ A+
Sbjct: 225 LDSATALFKLAVAN 238
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 32.9 bits (73), Expect = 0.12
Identities = 28/249 (11%), Positives = 64/249 (25%), Gaps = 19/249 (7%)
Query: 40 HKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSL 99
+ + P A+ ++E ++++ P + W + + + + R L
Sbjct: 31 QEGDLPNAV--LLFEAAVQQDPKHMEAWQYLGTTQAENEQ--------ELLAISALRRCL 80
Query: 100 VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPE 159
+ ++ Q + LR P H + +
Sbjct: 81 ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 140
Query: 160 TAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEA------AVKLAYIVNKESFVSKHGKSN 213
+ LF E E ++ + + V + V +
Sbjct: 141 RILGSLLSD-SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 199
Query: 214 HQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL--WNSLADYYIRSGLFERA 271
N+ + + R Q G++ +L I G A
Sbjct: 200 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259
Query: 272 RDIYEEAIQ 280
+ + EA+
Sbjct: 260 VEHFLEALN 268
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 32.7 bits (73), Expect = 0.15
Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 10/193 (5%)
Query: 88 YEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPL 147
+ FE+++ +++ G L + + + RAL H V
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGN 242
Query: 148 YLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVS 207
+ + A+ +RR ++L P + Y ++++ V A +
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--VAEAEDCYNTALRL 300
Query: 208 KHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGL 267
++ + N ++ L A+ + ++LA + G
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVLQQQGK 354
Query: 268 FERARDIYEEAIQ 280
+ A Y+EAI+
Sbjct: 355 LQEALMHYKEAIR 367
Score = 32.3 bits (72), Expect = 0.22
Identities = 15/127 (11%), Positives = 43/127 (33%), Gaps = 10/127 (7%)
Query: 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDY 112
Y R+++ P + N +++ + + + +L +
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKGS--------VAEAEDCYNTALRLCPTHADSLNNL 311
Query: 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172
+Q I + ++ +AL P + S ++ + A+ ++ +++
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Query: 173 PEDAEDY 179
P A+ Y
Sbjct: 370 PTFADAY 376
Score = 32.0 bits (71), Expect = 0.26
Identities = 24/264 (9%), Positives = 63/264 (23%), Gaps = 34/264 (12%)
Query: 41 KKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV 100
+ A + ++ P + + + + + + + ++
Sbjct: 12 AGDFEAAE--RHCMQLWRQEPDNTGVLLLLSSIHFQCRR--------LDRSAHFSTLAIK 61
Query: 101 FMHKMPRIWLDYGRFL-----------MDQHKITQTRHVFDRALRALPITQHHRVWPLYL 149
+ + + G +H + D + +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 150 SFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKH 209
S + R L + E + + E A + V
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 210 GKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL-------------WN 256
+ + ++ +P+ + + + R + +
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 257 SLADYYIRSGLFERARDIYEEAIQ 280
+LA Y GL + A D Y AI+
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIE 265
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 29.3 bits (65), Expect = 1.2
Identities = 22/166 (13%), Positives = 54/166 (32%), Gaps = 5/166 (3%)
Query: 31 VKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYED 90
+ + + + + + + I+ + KEL L++R+K +
Sbjct: 32 TEIFQKPLMESELLTEKEVAMIF-VNWKELIMCNIKLLKALRVRKKMS----GEKMPVKM 86
Query: 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLS 150
+ + L M R + T F ++ L + + PL
Sbjct: 87 IGDILSAQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSF 146
Query: 151 FVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKL 196
+K + + L+ PE+ D+ ++E+ +E ++
Sbjct: 147 ILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQV 192
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 176
Score = 28.7 bits (64), Expect = 1.6
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 8/93 (8%)
Query: 587 MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAI 646
E Y+KK E+ G P+ Y+ P R + + + G +
Sbjct: 3 FLEYVLNYVKKGVELGGFPE--DFYKIL-----SRPRRVLIVNIP-VRLDGGGFEVFEGY 54
Query: 647 YAHCSQICDPRVTAGFWAAWKSFEITHGNEDTM 679
+ P + + M
Sbjct: 55 RVQHCDVLGPYKGGVRFHPEVTLADDVALAILM 87
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 28.9 bits (64), Expect = 1.8
Identities = 13/126 (10%), Positives = 36/126 (28%), Gaps = 13/126 (10%)
Query: 158 PETAVRVFRRYLKLFPEDAEDYIEY---LSSIERLDEAAVKLAYIVNKESFVSKHGKSNH 214
+ A+ + +K P+DA + L + A +L +
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG----A 67
Query: 215 QLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDI 274
L + D + ++ ++L + + S +E+ ++
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATAKVL-----GENEELTKSLV-SFNLSMVSQDYEQVSEL 121
Query: 275 YEEAIQ 280
+ +
Sbjct: 122 ALQIEE 127
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina
crista-galli) [TaxId: 49817]}
Length = 239
Score = 28.5 bits (63), Expect = 2.3
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 379 VKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIF-DKATLVPYTKVEDLATVWCEWA 437
+KT +L G++ + I+ Y+ ++ L++ + ++ D+ V +W
Sbjct: 153 IKTQPFQLDNGQVANVVIK----YDAPSKILHVVLVYPSSGAIYTIAEIVDVKQVLPDWV 208
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga
maritima [TaxId: 2336]}
Length = 149
Score = 27.7 bits (61), Expect = 2.8
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 2/97 (2%)
Query: 284 TVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLN 343
+ + + YA E+ L + A + E A L + R L +
Sbjct: 25 LIPNLVETVKGYAAHEKEILEEIAN--ARAKLIGAKTPQESAQADAELSSALSRLLAIAE 82
Query: 344 SVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVK 380
+ + N + + + + R Y EAVK
Sbjct: 83 NYPNLKADANFRQLMDELAGTENRIAVARRDYNEAVK 119
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 27.1 bits (59), Expect = 5.4
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 583 LPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMC 627
+P + +I K +R+ + AIE+ +
Sbjct: 1 MPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLG 45
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 27.1 bits (59), Expect = 6.8
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 5 GFTGIYTTENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIY 53
G++ ED+ E R+P V+ + + P+ N +
Sbjct: 23 AADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAH 71
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
{Cow (Bos taurus) [TaxId: 9913]}
Length = 336
Score = 27.1 bits (60), Expect = 7.3
Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 32/210 (15%)
Query: 129 FDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIER 188
+ A+ R W + F ++ ++ + ++ E+ I Y
Sbjct: 56 YQAAVDGARKANSTRTW-KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY 114
Query: 189 LDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQ-NPDKIR------SLNVDAIIR 241
+E L + E ++ EL + S+ P K+R V+ I
Sbjct: 115 FEELITMLEAALGLERAHMG-------MFTELAILYSKFKPQKMREHLELFWSRVN--IP 165
Query: 242 GGLRRYTDQLGHLWNSLADYYIRSGLFERA-------------RDIYEEAIQTVTTVRDF 288
LR HLW L Y + ++ A +++ I V V +
Sbjct: 166 KVLRAAEQA--HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY 223
Query: 289 TQVFDAYAQFEELSLNKRMEEIAENDTPSE 318
+ Y +F+ L LN + ++ +
Sbjct: 224 YRAIQFYLEFKPLLLNDLLMVLSPRLDHTR 253
>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase
{Salmonella typhi [TaxId: 90370]}
Length = 252
Score = 26.8 bits (59), Expect = 7.5
Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 11/152 (7%)
Query: 83 ITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHH 142
+ V + +D+ + + V A+ +P+
Sbjct: 22 LMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTF 81
Query: 143 RVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY-LSSIERLDEAAVKLAYIVN 201
R S + T D I+ L + + +A V A+ N
Sbjct: 82 R------SAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHN 135
Query: 202 KESFVSKH----GKSNHQLWNELCEMISQNPD 229
+S H S ++ + L +M + D
Sbjct: 136 VYVVMSNHDFHQTPSAEEMVSRLRKMQALGAD 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,807,438
Number of extensions: 141864
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 45
Length of query: 703
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 611
Effective length of database: 1,144,436
Effective search space: 699250396
Effective search space used: 699250396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.0 bits)