BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6462
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VB74|U396_DROME UPF0396 protein CG6066 OS=Drosophila melanogaster GN=CG6066 PE=1
SV=1
Length = 463
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/121 (81%), Positives = 112/121 (92%), Gaps = 1/121 (0%)
Query: 114 VGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYV 173
VGP+ + +L QKD+GKALLPGEGAAMAAY+AEGKRIPRRGEIGLTSDEI +E+VGYV
Sbjct: 342 VGPSLRPGGSLNQKDFGKALLPGEGAAMAAYIAEGKRIPRRGEIGLTSDEIANFESVGYV 401
Query: 174 MSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKL-AKN 232
MSGSRHRRMEAVRIRKENQ+YSADEKRALAMFSKEERQKREN+IL+QFK+M+ SKL AK+
Sbjct: 402 MSGSRHRRMEAVRIRKENQLYSADEKRALAMFSKEERQKRENKILSQFKDMIHSKLQAKD 461
Query: 233 K 233
K
Sbjct: 462 K 462
>sp|Q8N5F7|NKAP_HUMAN NF-kappa-B-activating protein OS=Homo sapiens GN=NKAP PE=1 SV=1
Length = 415
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/129 (71%), Positives = 102/129 (79%), Gaps = 10/129 (7%)
Query: 112 DTVGP-APKQHVTLTQKD-----YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIE 165
D +GP APK TLT +D YG ALLPGEGAAMA YV GKRIPRRGEIGLTS+EI
Sbjct: 289 DLIGPEAPK---TLTSQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIA 345
Query: 166 RYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMV 225
+E GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL F+EMV
Sbjct: 346 SFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMV 405
Query: 226 SSKLAKNKD 234
K K KD
Sbjct: 406 YRK-TKGKD 413
>sp|Q9D0F4|NKAP_MOUSE NF-kappa-B-activating protein OS=Mus musculus GN=Nkap PE=1 SV=1
Length = 415
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/129 (70%), Positives = 101/129 (78%), Gaps = 10/129 (7%)
Query: 112 DTVGP-APKQHVTLTQKD-----YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIE 165
D +GP APK TL +D YG ALLPGEGAAMA YV GKRIPRRGEIGLTS+EI
Sbjct: 289 DLIGPEAPK---TLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIA 345
Query: 166 RYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMV 225
+E GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL F+EMV
Sbjct: 346 SFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMV 405
Query: 226 SSKLAKNKD 234
K K KD
Sbjct: 406 YRK-TKGKD 413
>sp|Q4V7C9|NKAP_RAT NF-kappa-B-activating protein OS=Rattus norvegicus GN=Nkap PE=2
SV=1
Length = 415
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/129 (70%), Positives = 101/129 (78%), Gaps = 10/129 (7%)
Query: 112 DTVGP-APKQHVTLTQKD-----YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIE 165
D +GP APK TL +D YG ALLPGEGAAMA YV GKRIPRRGEIGLTS+EI
Sbjct: 289 DLIGPEAPK---TLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIA 345
Query: 166 RYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMV 225
+E GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL F+EMV
Sbjct: 346 SFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMV 405
Query: 226 SSKLAKNKD 234
K K KD
Sbjct: 406 YRK-TKGKD 413
>sp|Q5M9Q1|NKAPL_HUMAN NKAP-like protein OS=Homo sapiens GN=NKAPL PE=2 SV=3
Length = 402
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 100/126 (79%), Gaps = 4/126 (3%)
Query: 112 DTVGP-APKQHVTLTQKD--YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYE 168
D +GP AP H + +K YG ALLPGEGAAMA YV GKRIPRRGEIGLTS+EI +E
Sbjct: 276 DLIGPEAPIIHTSQDEKPLKYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIGSFE 335
Query: 169 AVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSK 228
GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KRE++IL F+EMV K
Sbjct: 336 CSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRESKILASFREMVHKK 395
Query: 229 LAKNKD 234
K KD
Sbjct: 396 -TKEKD 400
>sp|Q55ED4|U396_DICDI UPF0396 protein OS=Dictyostelium discoideum GN=DDB_G0269284 PE=3
SV=1
Length = 510
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 96/121 (79%), Gaps = 3/121 (2%)
Query: 109 SDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYE 168
S+RD +GP P V + YG A++PGE A+A +V E KRIPRRGE+GLTS++I +E
Sbjct: 390 SNRD-IGPKPISEVQVGS--YGGAMMPGEAEAIAQFVKENKRIPRRGEVGLTSEQIASFE 446
Query: 169 AVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSK 228
GYVMSGSRHRRM AVRIRKE+Q+YSA+E++ALAM ++EE+ KRENR+L F++++++K
Sbjct: 447 ETGYVMSGSRHRRMNAVRIRKESQVYSAEEQKALAMLNREEKAKRENRLLADFRDLINTK 506
Query: 229 L 229
L
Sbjct: 507 L 507
>sp|Q4P4G8|U396_USTMA UPF0396 protein UM04995 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=UM04995 PE=3 SV=1
Length = 577
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 80/97 (82%)
Query: 129 YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIR 188
YG ALLPGEG+AMA+YV +GKRIPRRGEIGLTSD+IE YE GYVMSGSRH RM AVR+R
Sbjct: 470 YGGALLPGEGSAMASYVQDGKRIPRRGEIGLTSDQIEAYEKAGYVMSGSRHHRMNAVRMR 529
Query: 189 KENQIYSADEKRALAMFSKEERQKRENRILTQFKEMV 225
KENQ+ SA+EKR + EE+ K+E I++QFKE+V
Sbjct: 530 KENQVISAEEKRTMLRLQAEEKAKKEREIVSQFKELV 566
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.120 0.316
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,324,358
Number of Sequences: 539616
Number of extensions: 3426323
Number of successful extensions: 85865
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 1106
Number of HSP's that attempted gapping in prelim test: 40263
Number of HSP's gapped (non-prelim): 23319
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 59 (27.3 bits)