Query psy6462
Match_columns 234
No_of_seqs 108 out of 126
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 18:32:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2812|consensus 100.0 4.2E-69 9.1E-74 499.5 10.5 137 83-231 285-424 (426)
2 PF06047 SynMuv_product: Ras-i 100.0 1.6E-63 3.5E-68 394.7 9.3 103 126-228 2-104 (104)
3 PF03457 HA: Helicase associat 81.7 0.32 7E-06 34.6 -0.7 45 127-173 20-68 (68)
4 KOG2138|consensus 77.1 1.2 2.7E-05 46.6 1.5 19 76-94 845-863 (883)
5 TIGR01762 chlorin-enz chlorina 35.0 40 0.00087 30.7 3.2 18 159-176 3-20 (288)
6 TIGR02408 ectoine_ThpD ectoine 26.5 37 0.0008 30.3 1.4 18 158-175 16-33 (277)
7 PF07697 7TMR-HDED: 7TM-HD ext 26.4 31 0.00068 28.5 0.9 28 145-173 193-220 (222)
8 PF05678 VQ: VQ motif; InterP 25.3 65 0.0014 21.0 2.1 14 219-232 13-26 (31)
9 TIGR01226 phe_am_lyase phenyla 24.8 43 0.00093 35.0 1.7 74 132-206 149-235 (680)
10 cd07050 BMC_EutL_repeat2 ethan 24.2 32 0.00069 27.5 0.5 18 125-142 51-68 (87)
No 1
>KOG2812|consensus
Probab=100.00 E-value=4.2e-69 Score=499.47 Aligned_cols=137 Identities=66% Similarity=1.022 Sum_probs=123.9
Q ss_pred CCccCcccccccccCCCCCCCCCCCCCCCCccCCCCCc-cc--ccchhhhccccCCChhhhHHHHHHcCCCcCCCccCCC
Q psy6462 83 SSSEDEWVDKSAVKSSDSSHSSDSDNSDRDTVGPAPKQ-HV--TLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGL 159 (234)
Q Consensus 83 es~Ed~WVEKsk~~~~~~~~~~~~~~~~~~~iGP~P~~-~~--~~~~~~yG~aLlpGEG~AmA~yv~~gkRIPRRGEiGl 159 (234)
...+.+|.+++.. ++..++|||+|+. ++ ....-+||+|||||||+|||+||++|+||||||||||
T Consensus 285 ~~~e~~w~~k~~s------------e~~~~~igpe~~~s~~~ed~~pl~yG~aLlpGEGaamA~Yv~~GkRIPRRGEIGL 352 (426)
T KOG2812|consen 285 MISEAEWSEKVDS------------EEESGLIGPEAPGSHTSEDHKPLNYGKALLPGEGAAMAAYVAAGKRIPRRGEIGL 352 (426)
T ss_pred hhhhhhhhhccch------------hhhccccCCCCCCCCCcCCCcccccccccCCCccHHHHHHHHhcCcCCcccccCc
Confidence 4568889999863 5778899999732 21 1223469999999999999999999999999999999
Q ss_pred ChhhhhhhhhcceeecCCccchhhHhHhhhhcccccHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6462 160 TSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLAK 231 (234)
Q Consensus 160 tseeI~~~E~~GYVMSGSRH~RMnAvRlRKEnQvySAeEKRaLa~~n~EEr~krE~~il~~fremv~~k~~~ 231 (234)
|++||+.|||+|||||||||+|||||||||||||||||||||||+||+||+++|||+||++|++||+++|+.
T Consensus 353 tSeEIa~fE~~GYVMSGSRHrrMeAvRlRKENQvySAdEKRaLasfn~Eer~KRE~kiLs~fr~mvh~k~~~ 424 (426)
T KOG2812|consen 353 TSEEIASFECVGYVMSGSRHRRMEAVRLRKENQVYSADEKRALASFNQEERRKRENKILSQFREMVHRKTKE 424 (426)
T ss_pred CHHHhhhhhhcceeeccchHHHHHHHHhhhhccccchHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999953
No 2
>PF06047 SynMuv_product: Ras-induced vulval development antagonist; InterPro: IPR009269 This is a family of eukaryotic proteins with undetermined function.
Probab=100.00 E-value=1.6e-63 Score=394.66 Aligned_cols=103 Identities=78% Similarity=1.198 Sum_probs=100.6
Q ss_pred hhhhccccCCChhhhHHHHHHcCCCcCCCccCCCChhhhhhhhhcceeecCCccchhhHhHhhhhcccccHHHHHHHHhh
Q psy6462 126 QKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMF 205 (234)
Q Consensus 126 ~~~yG~aLlpGEG~AmA~yv~~gkRIPRRGEiGltseeI~~~E~~GYVMSGSRH~RMnAvRlRKEnQvySAeEKRaLa~~ 205 (234)
..+||+|||||||+|||+||++|||||||||||||++||+.||++|||||||||+||||||||||||||||||||||++|
T Consensus 2 ~~~yG~aLlpGEG~AmA~yv~~gkRIPRRGEIGltseeI~~~E~~GYVMSGSRh~rm~avR~rKEnQvysaeekral~~~ 81 (104)
T PF06047_consen 2 PVNYGGALLPGEGAAMAAYVQQGKRIPRRGEIGLTSEEIASFEDVGYVMSGSRHRRMNAVRLRKENQVYSAEEKRALAMF 81 (104)
T ss_pred ccccccccCCCchHHHHHHHHcCCCCCCCcccCCCHHHHHHHHhcCeeeeccchhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q psy6462 206 SKEERQKRENRILTQFKEMVSSK 228 (234)
Q Consensus 206 n~EEr~krE~~il~~fremv~~k 228 (234)
|+|||++||++||++|++||++|
T Consensus 82 ~~eer~krE~~i~~~fr~lv~~k 104 (104)
T PF06047_consen 82 NKEERAKRENKILSQFRELVNRK 104 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999864
No 3
>PF03457 HA: Helicase associated domain; InterPro: IPR005114 This short domain is found in multiple copies in bacterial helicase proteins. The domain is predicted to contain 3 alpha helices. The function of this domain may be to bind nucleic acid.; PDB: 2KTA_A.
Probab=81.71 E-value=0.32 Score=34.55 Aligned_cols=45 Identities=29% Similarity=0.628 Sum_probs=31.4
Q ss_pred hhhccccCCCh----hhhHHHHHHcCCCcCCCccCCCChhhhhhhhhccee
Q psy6462 127 KDYGKALLPGE----GAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYV 173 (234)
Q Consensus 127 ~~yG~aLlpGE----G~AmA~yv~~gkRIPRRGEiGltseeI~~~E~~GYV 173 (234)
..+|+...|-. |-.++++|....+-=|.|. ||.+.|+.++++|+|
T Consensus 20 ~~~G~~~vp~~~~~~~~~Lg~Wl~~qR~~~r~g~--L~~er~~~L~~lg~~ 68 (68)
T PF03457_consen 20 EEHGHLNVPRDYVTDGFPLGQWLNNQRRKYRKGK--LTPERIERLDALGFW 68 (68)
T ss_dssp HHHS--S-SS-----SSHHHHHHHHHHHHHHHT-----HHHHHHHHHHT--
T ss_pred HHHCCCCCCcccCcCCCcHHHHHHHHHHHHHcCC--CCHHHHHHHHcCCCC
Confidence 34777777655 8999999999988888887 999999999999986
No 4
>KOG2138|consensus
Probab=77.14 E-value=1.2 Score=46.56 Aligned_cols=19 Identities=47% Similarity=0.433 Sum_probs=10.3
Q ss_pred CCCCCCCCCccCccccccc
Q psy6462 76 SSSSDSSSSSEDEWVDKSA 94 (234)
Q Consensus 76 SSSssSses~Ed~WVEKsk 94 (234)
+||+++|+++.+-|-++..
T Consensus 845 kSss~~Ssd~sdk~s~kek 863 (883)
T KOG2138|consen 845 KSSSSESSDSSDKQSDKEK 863 (883)
T ss_pred ccccccccccchhhhhhhh
Confidence 3444444555666766654
No 5
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=34.97 E-value=40 Score=30.71 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=16.3
Q ss_pred CChhhhhhhhhcceeecC
Q psy6462 159 LTSDEIERYEAVGYVMSG 176 (234)
Q Consensus 159 ltseeI~~~E~~GYVMSG 176 (234)
||.+||+.|+.-|||.--
T Consensus 3 Lt~eqi~~y~e~Gyv~~~ 20 (288)
T TIGR01762 3 LTAEERQSFEKNGFIGPF 20 (288)
T ss_pred CCHHHHHHHHhCCEEeCc
Confidence 899999999999999864
No 6
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=26.49 E-value=37 Score=30.34 Aligned_cols=18 Identities=22% Similarity=0.623 Sum_probs=16.3
Q ss_pred CCChhhhhhhhhcceeec
Q psy6462 158 GLTSDEIERYEAVGYVMS 175 (234)
Q Consensus 158 GltseeI~~~E~~GYVMS 175 (234)
-||.+||+.|+.-|||.-
T Consensus 16 ~Lt~eqi~~f~~dGyvvl 33 (277)
T TIGR02408 16 PLSAKQLQSYERDGFLLL 33 (277)
T ss_pred CCCHHHHHHHHHCCEEEC
Confidence 379999999999999985
No 7
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=26.39 E-value=31 Score=28.54 Aligned_cols=28 Identities=39% Similarity=0.752 Sum_probs=26.0
Q ss_pred HHcCCCcCCCccCCCChhhhhhhhhccee
Q psy6462 145 VAEGKRIPRRGEIGLTSDEIERYEAVGYV 173 (234)
Q Consensus 145 v~~gkRIPRRGEiGltseeI~~~E~~GYV 173 (234)
|++|..|=|+||| .|.+.+..++++|++
T Consensus 193 V~~Ge~IV~kGe~-VT~e~~~~L~~l~~~ 220 (222)
T PF07697_consen 193 VKKGEVIVRKGEI-VTEEQYEKLESLGLL 220 (222)
T ss_pred ccCCCEEecCCcE-eCHHHHHHHHHcCCc
Confidence 9999999999997 899999999999974
No 8
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=25.29 E-value=65 Score=21.01 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcC
Q psy6462 219 TQFKEMVSSKLAKN 232 (234)
Q Consensus 219 ~~fremv~~k~~~~ 232 (234)
++||+||++-++.+
T Consensus 13 ~~Fr~lVQ~LTG~~ 26 (31)
T PF05678_consen 13 SNFRALVQRLTGAP 26 (31)
T ss_pred HHHHHHHHHhHCcC
Confidence 58999999988765
No 9
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=24.76 E-value=43 Score=34.98 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=46.5
Q ss_pred ccCCChhhhHHHHHHcCC--CcCCCccCCCChhhhhhhhhcceeecCCcc--------chhhHhHhhhhccc---ccHHH
Q psy6462 132 ALLPGEGAAMAAYVAEGK--RIPRRGEIGLTSDEIERYEAVGYVMSGSRH--------RRMEAVRIRKENQI---YSADE 198 (234)
Q Consensus 132 aLlpGEG~AmA~yv~~gk--RIPRRGEiGltseeI~~~E~~GYVMSGSRH--------~RMnAvRlRKEnQv---ySAeE 198 (234)
.+.|-=-++|++|+..|- .||+||-||-+.| |.-.=-++-+|-|..+ .+|.|-...+..-+ +.-.-
T Consensus 149 GVr~evle~l~~lLN~~i~P~VP~rGSIGASGD-L~PLShIa~aL~Geg~v~~~~~~G~~~~a~eAL~~aGl~p~~~L~p 227 (680)
T TIGR01226 149 GIRFEILEAITKLLNANVTPCLPLRGTITASGD-LVPLSYIAGLITGRPNSKVYSPDGQIMSAAEALKLAGIEGGFELQP 227 (680)
T ss_pred CCCHHHHHHHHHHHhCcCcccCCCCCCcCccch-HHHHHHHHHHHcCCCCceeecCCCeEEeHHHHHHHcCCCCCCCCCC
Confidence 366667789999999995 8999999997654 4445555666766544 34444433333322 23334
Q ss_pred HHHHHhhc
Q psy6462 199 KRALAMFS 206 (234)
Q Consensus 199 KRaLa~~n 206 (234)
|.+||++|
T Consensus 228 KEGLALvN 235 (680)
T TIGR01226 228 KEGLAIVN 235 (680)
T ss_pred ccchhhhc
Confidence 55555554
No 10
>cd07050 BMC_EutL_repeat2 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 2 (the second BMC domain of EutL).
Probab=24.17 E-value=32 Score=27.52 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=14.7
Q ss_pred chhhhccccCCChhhhHH
Q psy6462 125 TQKDYGKALLPGEGAAMA 142 (234)
Q Consensus 125 ~~~~yG~aLlpGEG~AmA 142 (234)
+..|||++||-|-..|--
T Consensus 51 SetNfgGalLtGsqsAC~ 68 (87)
T cd07050 51 SETNFGGALLTGSQSACK 68 (87)
T ss_pred ccccccceeeecCHHHHH
Confidence 567899999999987653
Done!