Query psy6462
Match_columns 234
No_of_seqs 108 out of 126
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 18:32:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lic_A Vitellogenin; lipid tra 39.5 19 0.00063 23.3 2.2 20 73-92 14-33 (35)
2 3hym_A Anaphase-promoting comp 35.3 13 0.00046 23.4 1.0 14 157-170 9-22 (29)
3 1qp6_A Protein (alpha2D); de n 29.0 9.4 0.00032 24.7 -0.4 8 150-157 15-22 (35)
4 2kta_A Putative helicase; PSI, 24.2 17 0.00058 26.5 0.1 49 128-179 22-70 (74)
5 1q7e_A Hypothetical protein YF 23.7 19 0.00065 33.5 0.4 25 156-180 401-425 (428)
6 1ps1_A Pentalenene synthase; a 21.7 4.9 0.00017 34.4 -3.8 47 142-188 264-316 (337)
7 3emr_A ECTD; double stranded b 19.4 40 0.0014 29.2 1.5 19 157-175 33-51 (310)
8 2opw_A Phyhd1 protein; double- 16.1 54 0.0018 27.1 1.5 19 158-176 3-21 (291)
9 3gja_A CYTC3; halogenase, beta 15.7 64 0.0022 28.0 1.9 25 152-176 5-29 (319)
10 2fct_A Syringomycin biosynthes 15.3 58 0.002 27.3 1.5 18 158-175 9-26 (313)
No 1
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=39.47 E-value=19 Score=23.29 Aligned_cols=20 Identities=55% Similarity=0.533 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCccCccccc
Q psy6462 73 YSSSSSSDSSSSSEDEWVDK 92 (234)
Q Consensus 73 ~sdSSSssSses~Ed~WVEK 92 (234)
++.|||+=|++++.|+|.-+
T Consensus 14 istssssissseendfwqpk 33 (35)
T 2lic_A 14 ISTSSSSISSSEENDFWQPK 33 (35)
T ss_dssp SCSCSSCCSTTCSCSSCCCC
T ss_pred cccccccccccccccccCCC
Confidence 44555555667778889754
No 2
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=35.27 E-value=13 Score=23.38 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=12.6
Q ss_pred CCCChhhhhhhhhc
Q psy6462 157 IGLTSDEIERYEAV 170 (234)
Q Consensus 157 iGltseeI~~~E~~ 170 (234)
|.||+|+|+.||.+
T Consensus 9 I~l~~eDi~e~E~~ 22 (29)
T 3hym_A 9 LELKLDDIEEFENI 22 (29)
T ss_dssp CCCCSGGGHHHHHH
T ss_pred EEecHHHHHHHHHH
Confidence 88999999999974
No 3
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=28.96 E-value=9.4 Score=24.66 Aligned_cols=8 Identities=75% Similarity=1.223 Sum_probs=6.0
Q ss_pred CcCCCccC
Q psy6462 150 RIPRRGEI 157 (234)
Q Consensus 150 RIPRRGEi 157 (234)
.=||||||
T Consensus 15 kgprrgei 22 (35)
T 1qp6_A 15 KGPRRGEI 22 (35)
T ss_dssp SSSCSHHH
T ss_pred cCCccchH
Confidence 34999985
No 4
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=24.22 E-value=17 Score=26.48 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=36.8
Q ss_pred hhccccCCChhhhHHHHHHcCCCcCCCccCCCChhhhhhhhhcceeecCCcc
Q psy6462 128 DYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRH 179 (234)
Q Consensus 128 ~yG~aLlpGEG~AmA~yv~~gkRIPRRGEiGltseeI~~~E~~GYVMSGSRH 179 (234)
.+|+.. |-..-.++.+|....+-=+.|. ||.+-|+.++++|+|-|=--|
T Consensus 22 ~hGh~~-P~~~~~LG~WV~~QR~~~k~g~--Ls~eRi~~L~~lGf~w~~~~~ 70 (74)
T 2kta_A 22 KYRRFP-KSTEGNLGGWCHTQRKMRKQGK--LPNDRRLLLDKIGFVWSLEHH 70 (74)
T ss_dssp HHSSCS-SCCSSHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHTCCCCCCSC
T ss_pred HHCCCC-CCCCChhhhhHHHHHHHHHcCC--CCHHHHHHHHHcCCEeccccc
Confidence 477777 7444468888887765556674 999999999999999775443
No 5
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer, PSI, protein structu initiative; HET: MSE; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A* 1pt7_A 1pt5_A 1pt8_A*
Probab=23.73 E-value=19 Score=33.49 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=18.1
Q ss_pred cCCCChhhhhhhhhcceeecCCccc
Q psy6462 156 EIGLTSDEIERYEAVGYVMSGSRHR 180 (234)
Q Consensus 156 EiGltseeI~~~E~~GYVMSGSRH~ 180 (234)
|+|++.+||+.+...|-|+.||-|.
T Consensus 401 elG~~~~~i~~L~~~gvi~~~~~~~ 425 (428)
T 1q7e_A 401 ELGYSDDEIAAMKQNHAIEGGSHHH 425 (428)
T ss_dssp HTTCCHHHHHHHHHHHHHC------
T ss_pred HcCCCHHHHHHHHHCcCeecCCccc
Confidence 5799999999999999999999884
No 6
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=21.71 E-value=4.9 Score=34.36 Aligned_cols=47 Identities=30% Similarity=0.475 Sum_probs=32.9
Q ss_pred HHHHHcCCCcCCCcc-CCCCh---hhhhhh--hhcceeecCCccchhhHhHhh
Q psy6462 142 AAYVAEGKRIPRRGE-IGLTS---DEIERY--EAVGYVMSGSRHRRMEAVRIR 188 (234)
Q Consensus 142 A~yv~~gkRIPRRGE-iGlts---eeI~~~--E~~GYVMSGSRH~RMnAvRlR 188 (234)
.+|...-..+|+.+. +||+. +++..| +.+.|+|+|+-++-++.-|=.
T Consensus 264 ~~~~~~~~~lp~~~~~~~~~~~~~~~v~~y~v~~l~~~~~G~~~W~~~s~RY~ 316 (337)
T 1ps1_A 264 EQYLLLESCLPKVGEIYQLDTAEREALERYRTDAVRTVIRGSYDWHRSSGRYD 316 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTHHHHHHHHHHHTTTCC---
T ss_pred HHHHHHHHHhhhhhhhcCCChhhHHHHHHhhHHHHHHHHHHHHHHHhcCCCcC
Confidence 345555578999884 89984 445554 888999999999888777753
No 7
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}
Probab=19.42 E-value=40 Score=29.22 Aligned_cols=19 Identities=21% Similarity=0.566 Sum_probs=17.1
Q ss_pred CCCChhhhhhhhhcceeec
Q psy6462 157 IGLTSDEIERYEAVGYVMS 175 (234)
Q Consensus 157 iGltseeI~~~E~~GYVMS 175 (234)
--||.++|+.|+.-|||.-
T Consensus 33 ~~LT~eqi~~f~~dGyvvi 51 (310)
T 3emr_A 33 APITKEQLDSYEKNGFLQI 51 (310)
T ss_dssp SSSCHHHHHHHHHHSEEEE
T ss_pred CCCCHHHHHHHHhCCEEEc
Confidence 4699999999999999975
No 8
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=16.13 E-value=54 Score=27.13 Aligned_cols=19 Identities=11% Similarity=0.513 Sum_probs=16.7
Q ss_pred CCChhhhhhhhhcceeecC
Q psy6462 158 GLTSDEIERYEAVGYVMSG 176 (234)
Q Consensus 158 GltseeI~~~E~~GYVMSG 176 (234)
-||.++++.|+.-|||.--
T Consensus 3 ~Lt~e~~~~f~~dGyvvl~ 21 (291)
T 2opw_A 3 CLSPSQLQKFQQDGFLVLE 21 (291)
T ss_dssp CCCHHHHHHHHHHSEEEET
T ss_pred cCCHHHHHHHHhCCEEEec
Confidence 3899999999999999854
No 9
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A*
Probab=15.68 E-value=64 Score=27.98 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=18.9
Q ss_pred CCCccCCCChhhhhhhhhcceeecC
Q psy6462 152 PRRGEIGLTSDEIERYEAVGYVMSG 176 (234)
Q Consensus 152 PRRGEiGltseeI~~~E~~GYVMSG 176 (234)
+..-.--||.++|+.|+.-|||.--
T Consensus 5 ~~~~~~~Lt~eq~~~f~~~Gyv~i~ 29 (319)
T 3gja_A 5 SEQANFTFSPEEVARFERDGYIGPV 29 (319)
T ss_dssp ---CCCCCCHHHHHHHHHHSEEEEE
T ss_pred ccccCCCCCHHHHHHHHHCCEEECc
Confidence 3444567999999999999999854
No 10
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*
Probab=15.29 E-value=58 Score=27.32 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=16.3
Q ss_pred CCChhhhhhhhhcceeec
Q psy6462 158 GLTSDEIERYEAVGYVMS 175 (234)
Q Consensus 158 GltseeI~~~E~~GYVMS 175 (234)
-||.++|+.|+.-|||.-
T Consensus 9 ~Lt~e~~~~f~~dGyvvl 26 (313)
T 2fct_A 9 ALTAEQRASFEKNGFIGP 26 (313)
T ss_dssp CCCHHHHHHHHHHSEEEE
T ss_pred CCCHHHHHHHHhCCEEEC
Confidence 499999999999999974
Done!