Query psy6462
Match_columns 234
No_of_seqs 108 out of 126
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 18:32:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6462.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6462hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fcta1 b.82.2.9 (A:3-310) Syr 50.0 2.7 0.00019 33.0 1.3 18 157-174 3-20 (308)
2 d2a1xa1 b.82.2.9 (A:43-338) Ph 39.8 4.2 0.00031 31.3 1.0 17 159-175 11-27 (296)
3 d3deda1 d.145.1.4 (A:341-427) 26.6 4.6 0.00034 27.5 -0.8 56 129-191 26-87 (87)
4 d1w27a_ a.127.1.2 (A:) Phenyla 22.3 15 0.0011 34.5 1.7 74 132-206 149-236 (692)
5 d2o3ga1 d.145.1.4 (A:180-255) 21.9 5.2 0.00038 26.7 -1.2 28 129-156 18-48 (76)
6 d1hfia_ g.18.1.1 (A:) Factor H 17.5 16 0.0012 22.9 0.5 21 160-180 27-48 (62)
7 d2isya2 a.76.1.1 (A:65-140) Ir 16.0 13 0.00095 25.0 -0.3 28 132-159 43-76 (76)
8 d1kgda_ c.37.1.1 (A:) Guanylat 15.0 37 0.0027 24.9 2.1 27 148-174 38-70 (178)
9 d2p13a1 d.145.1.4 (A:431-515) 15.0 13 0.00098 24.9 -0.4 52 129-189 28-84 (85)
10 d1x3zb1 a.189.1.1 (B:253-309) 14.9 28 0.002 23.0 1.2 21 155-178 1-21 (57)
No 1
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}
Probab=49.97 E-value=2.7 Score=33.03 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=16.2
Q ss_pred CCCChhhhhhhhhcceee
Q psy6462 157 IGLTSDEIERYEAVGYVM 174 (234)
Q Consensus 157 iGltseeI~~~E~~GYVM 174 (234)
.-||.+||+.|+.-|||.
T Consensus 3 ~~Lt~eq~~~f~~~Gyl~ 20 (308)
T d2fcta1 3 FALTAEQRASFEKNGFIG 20 (308)
T ss_dssp TCCCHHHHHHHHHHSEEE
T ss_pred CCCCHHHHHHHHhCCEEE
Confidence 469999999999999974
No 2
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.76 E-value=4.2 Score=31.34 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.6
Q ss_pred CChhhhhhhhhcceeec
Q psy6462 159 LTSDEIERYEAVGYVMS 175 (234)
Q Consensus 159 ltseeI~~~E~~GYVMS 175 (234)
||.+||+.|+.-|||.-
T Consensus 11 Lt~eq~~~f~~~Gyvvi 27 (296)
T d2a1xa1 11 LTLEQRKFYEENGFLVI 27 (296)
T ss_dssp CCSTHHHHHHHHSEEEE
T ss_pred CCHHHHHHHHHCCEEEc
Confidence 89999999999999863
No 3
>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}
Probab=26.61 E-value=4.6 Score=27.52 Aligned_cols=56 Identities=14% Similarity=0.386 Sum_probs=33.8
Q ss_pred hcccc-CCChh----hhHHHHHHcC-CCcCCCccCCCChhhhhhhhhcceeecCCccchhhHhHhhhhc
Q psy6462 129 YGKAL-LPGEG----AAMAAYVAEG-KRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKEN 191 (234)
Q Consensus 129 yG~aL-lpGEG----~AmA~yv~~g-kRIPRRGEiGltseeI~~~E~~GYVMSGSRH~RMnAvRlRKEn 191 (234)
||-.| +|++- ..+|-||..- .|||.-||. ++ |...=|...-..++|..-||++|++
T Consensus 26 ~~~~l~~~~~~~~~~~TlgG~il~~lg~iP~~Ge~-v~------~~~~~f~V~~~d~~rI~~V~v~r~h 87 (87)
T d3deda1 26 FELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDR-FE------WNGFSFEVVDMDRTRVDKILVQRHH 87 (87)
T ss_dssp TTCCSCCTTGGGTCCCBHHHHHHHHHCSSCCTTCE-EE------ETTEEEEEEEEETTEEEEEEEEECC
T ss_pred hCCCCCCCccccccccCHHHHHHHHhCcCCCCCCE-EE------ECCEEEEEEEeeCCeEEEEEEEeCC
Confidence 66555 34433 4788887654 699999984 11 2222233344555677778888764
No 4
>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley (Petroselinum crispum), PAL1 [TaxId: 4043]}
Probab=22.34 E-value=15 Score=34.50 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=49.2
Q ss_pred ccCCChhhhHHHHHHcCC--CcCCCccCCCChhhhhhhhhcceeecCCcc--------chhhHhHhhhhccc----ccHH
Q psy6462 132 ALLPGEGAAMAAYVAEGK--RIPRRGEIGLTSDEIERYEAVGYVMSGSRH--------RRMEAVRIRKENQI----YSAD 197 (234)
Q Consensus 132 aLlpGEG~AmA~yv~~gk--RIPRRGEiGltseeI~~~E~~GYVMSGSRH--------~RMnAvRlRKEnQv----ySAe 197 (234)
.+.|.==++|++|+..|- .||+||=||-+.| +.-+=-++-+|-|.-+ .+|.|.-.-+..-+ +.-.
T Consensus 149 GVr~ev~e~L~~lLN~~i~PvVP~~GSVGASGD-L~PLshial~LiGeg~v~~~g~~g~~~~a~eaL~~aGl~P~~l~L~ 227 (692)
T d1w27a_ 149 GIRFEILEAITKFLNQNITPCLPLRGTITASGD-LVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQ 227 (692)
T ss_dssp CCCHHHHHHHHHHHHTTCEECCBSSCCCSS--C-HHHHHHHHHHHTTCTTCCEECTTSCEECHHHHHHHHTCSSSCCCCC
T ss_pred CCCHHHHHHHHHHHhCCCCCcCcCCCCCCccch-hHHHHHHHHHHhCCCCceEecCCCeEeEHHHHHHHcCCCccccccc
Confidence 356666689999999996 8999999998876 6666666666666533 45666555554433 3334
Q ss_pred HHHHHHhhc
Q psy6462 198 EKRALAMFS 206 (234)
Q Consensus 198 EKRaLa~~n 206 (234)
.|.+||++|
T Consensus 228 ~KEGLALiN 236 (692)
T d1w27a_ 228 PKEGLALVN 236 (692)
T ss_dssp TTHHHHHHS
T ss_pred cccchhHhc
Confidence 577777776
No 5
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}
Probab=21.95 E-value=5.2 Score=26.71 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=19.5
Q ss_pred hccccCCChhh--hHHHHHHcC-CCcCCCcc
Q psy6462 129 YGKALLPGEGA--AMAAYVAEG-KRIPRRGE 156 (234)
Q Consensus 129 yG~aLlpGEG~--AmA~yv~~g-kRIPRRGE 156 (234)
+|-.|...++. .+|-||..- .+||..||
T Consensus 18 l~~~~~~~~~~~~Ti~G~vl~~lg~iP~~Ge 48 (76)
T d2o3ga1 18 LNLPQQEEDADFHTVAGLIMEELQTIPDVGD 48 (76)
T ss_dssp TTCCCCCTTCSCSBHHHHHHHHHTSCCCTTC
T ss_pred HCcCCCccccccccHHHHHHHHhCcCCCCCC
Confidence 55555444443 788888665 68999998
No 6
>d1hfia_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.45 E-value=16 Score=22.88 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=14.4
Q ss_pred Chhhhhhhhh-cceeecCCccc
Q psy6462 160 TSDEIERYEA-VGYVMSGSRHR 180 (234)
Q Consensus 160 tseeI~~~E~-~GYVMSGSRH~ 180 (234)
+.-+.-.|.| .||+|+|++..
T Consensus 27 ~~g~~v~y~C~~Gy~l~G~~~~ 48 (62)
T d1hfia_ 27 AHGTKLSYTCEGGFRISEENET 48 (62)
T ss_dssp CTTCEEEEECCTTCCBCSSCEE
T ss_pred cCCCEEEEECCCCCEECCCCee
Confidence 3334556665 59999998764
No 7
>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.02 E-value=13 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=17.5
Q ss_pred ccCCChhhhHHHHHH------cCCCcCCCccCCC
Q psy6462 132 ALLPGEGAAMAAYVA------EGKRIPRRGEIGL 159 (234)
Q Consensus 132 aLlpGEG~AmA~yv~------~gkRIPRRGEiGl 159 (234)
.|-|--=.++..|+. -|+.||-++|+|.
T Consensus 43 ~is~e~~~~L~~~l~~p~~~PHG~~IP~~~~~~~ 76 (76)
T d2isya2 43 VMSEDVERRLVKVLNNPTTSPFGNPIPGLVELGV 76 (76)
T ss_dssp TCCHHHHHHHHHHTTSCCBCTTSCBCCCHHHHTS
T ss_pred cCCHHHHHHHHHHhCCCCCCCCCCCCCCcccccC
Confidence 333333445555554 3678999999884
No 8
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.97 E-value=37 Score=24.89 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=17.5
Q ss_pred CCCcCCCccCC------CChhhhhhhhhcceee
Q psy6462 148 GKRIPRRGEIG------LTSDEIERYEAVGYVM 174 (234)
Q Consensus 148 gkRIPRRGEiG------ltseeI~~~E~~GYVM 174 (234)
-.|.||.||+. +|.++.......|..+
T Consensus 38 TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fi 70 (178)
T d1kgda_ 38 TTRPPKKDEENGKNYYFVSHDQMMQDISNNEYL 70 (178)
T ss_dssp ECSCC---CCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred ccCCCCCccccCccceeeehhhhhhheecCceE
Confidence 36999999997 7888887766665443
No 9
>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}
Probab=14.97 E-value=13 Score=24.90 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=32.0
Q ss_pred hccccCC--ChhhhHHHHHHcC-CCcCCCccCCCChhhhhhhhhcceee--cCCccchhhHhHhhh
Q psy6462 129 YGKALLP--GEGAAMAAYVAEG-KRIPRRGEIGLTSDEIERYEAVGYVM--SGSRHRRMEAVRIRK 189 (234)
Q Consensus 129 yG~aLlp--GEG~AmA~yv~~g-kRIPRRGEiGltseeI~~~E~~GYVM--SGSRH~RMnAvRlRK 189 (234)
||-.|.| ++-..+|-||..- .+||..||. ++--||.. --...+|+.-|||+|
T Consensus 28 l~~~l~~e~~~~~TlgG~i~~~lg~iP~~Ge~---------v~~~~~~f~V~~~~~~rI~~V~i~r 84 (85)
T d2p13a1 28 LEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQ---------ITVDGLIFEIVSVNKHNIGKVRVHR 84 (85)
T ss_dssp HTSCCCCTTCCCCBHHHHHHHHHSSCCCTTCE---------EEETTEEEEECCBCSSSBCEEEEEE
T ss_pred HCCCCCCccccceEHHHHHHHHhCcCCCCCCE---------EEECCEEEEEEEeeCCEEEEEEEEE
Confidence 7766655 3345899988765 799999983 22234422 233345677677654
No 10
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.86 E-value=28 Score=23.04 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=16.8
Q ss_pred ccCCCChhhhhhhhhcceeecCCc
Q psy6462 155 GEIGLTSDEIERYEAVGYVMSGSR 178 (234)
Q Consensus 155 GEiGltseeI~~~E~~GYVMSGSR 178 (234)
|-||||-++|-.+.. |.||.-
T Consensus 1 gtiglt~edl~~lr~---vvsg~p 21 (57)
T d1x3zb1 1 GSIGLTVEDLLSLRQ---VVSGNP 21 (57)
T ss_dssp CCCCCCTTHHHHHHH---HHHHCG
T ss_pred CCccccHHHHHHHHH---HhcCCh
Confidence 779999999988776 678843
Done!