RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6462
         (234 letters)



>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
           formigenes [TaxId: 847]}
          Length = 427

 Score = 31.9 bits (71), Expect = 0.055
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 122 VTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGE--------IGLTSDEIERYEAVGYV 173
           V +  +  G  L  G     + +  E  R P  GE        +GL   +I+   A   V
Sbjct: 368 VEVVDEIRGNHLTVGAPFKFSGFQPEITRAPLLGEHTDEVLKELGLDDAKIKELHAKQVV 427


>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
           [TaxId: 562]}
          Length = 417

 Score = 31.4 bits (70), Expect = 0.074
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 122 VTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGE--------IGLTSDEIERYEAVG 171
           V + Q   GK L  G     +A+  + K  P  GE        +G + DEI   +   
Sbjct: 357 VEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEHTAAVLQELGYSDDEIAAMKQNH 414


>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
           {Medicago truncatula [TaxId: 3880]}
          Length = 473

 Score = 29.7 bits (65), Expect = 0.27
 Identities = 7/51 (13%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 142 AAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRM--EAVRIRKE 190
             ++     I    +  +  +E+ +   +  V++G + ++M  +A+ ++K+
Sbjct: 400 CRFICNEWEIGMEIDTNVKREELAK--LINEVIAGDKGKKMKQKAMELKKK 448


>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus
           nidulans [TaxId: 162425]}
          Length = 389

 Score = 26.9 bits (58), Expect = 2.1
 Identities = 13/64 (20%), Positives = 19/64 (29%)

Query: 1   MQLSWRRGEKKEKELDYQEFLMLDNELFSVLPSGRKASPTSGDESSKKSKKKKHKKDKKK 60
            +L+   G  K   +      +    L + L   R    T+G   S          DKK 
Sbjct: 296 AELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKN 355

Query: 61  KSKK 64
              K
Sbjct: 356 DGPK 359


>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
           N-terminal DNA-binding fragment {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 230

 Score = 25.8 bits (57), Expect = 4.1
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 47  KKSKKKKHKKDKKKKSKKSKKRKKKKY 73
           +   +K+  K++K K K+  ++  K+Y
Sbjct: 112 QTEARKQMSKEEKLKIKEENEKLLKEY 138


>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 25.8 bits (57), Expect = 4.4
 Identities = 6/27 (22%), Positives = 17/27 (62%)

Query: 47  KKSKKKKHKKDKKKKSKKSKKRKKKKY 73
           +K +KK+    +KK+ +  +++ ++ Y
Sbjct: 104 QKEQKKQLTSQEKKQIRLEREKFEEDY 130


>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP
           {Bacillus subtilis [TaxId: 1423]}
          Length = 101

 Score = 24.9 bits (54), Expect = 4.7
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 182 MEAVRIRKENQIYSADEKRALAMFSKEERQK 212
           M+   I  +  +   + +R +   S E+R+K
Sbjct: 1   MKIYGIYMDRPLSQEENERFMTFISPEKREK 31


>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349
           {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 98

 Score = 24.0 bits (52), Expect = 8.8
 Identities = 4/41 (9%), Positives = 15/41 (36%)

Query: 149 KRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRK 189
             + + G++     + E  + +       R  R+  + + +
Sbjct: 47  NALLKTGDVIEIPLDFEPEDYLNNTSPTQRILRITVLEVER 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.304    0.120    0.316 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 759,877
Number of extensions: 33283
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 42
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.5 bits)