Query psy6463
Match_columns 259
No_of_seqs 198 out of 1192
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 18:33:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03119 alpha_CA_I_II_III_XIII 100.0 1.6E-50 3.4E-55 365.6 19.0 147 50-200 3-151 (259)
2 PF00194 Carb_anhydrase: Eukar 100.0 4.4E-50 9.4E-55 361.4 15.1 176 52-231 1-256 (256)
3 cd03150 alpha_CA_IX Carbonic a 100.0 4.3E-49 9.4E-54 354.0 17.5 137 61-200 1-139 (247)
4 cd03126 alpha_CA_XII_XIV Carbo 100.0 3.4E-48 7.3E-53 348.6 18.5 136 61-200 1-140 (249)
5 cd03121 alpha_CARP_X_XI_like C 100.0 4.2E-48 9E-53 349.3 18.6 138 61-200 1-144 (256)
6 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 3.7E-48 8.1E-53 348.1 18.0 136 61-199 1-140 (248)
7 cd03125 alpha_CA_VI Carbonic a 100.0 4.7E-48 1E-52 347.7 18.4 137 61-200 1-140 (249)
8 cd03122 alpha_CARP_receptor_li 100.0 2.3E-48 5E-53 350.4 12.7 193 61-253 1-207 (253)
9 KOG0382|consensus 100.0 2.1E-46 4.5E-51 338.7 17.8 178 51-231 4-261 (262)
10 cd03120 alpha_CARP_VIII Carbon 100.0 4.4E-46 9.5E-51 336.1 18.5 134 63-200 2-141 (256)
11 cd03149 alpha_CA_VII Carbonic 100.0 2.5E-45 5.4E-50 327.7 17.3 125 74-200 1-128 (236)
12 cd03118 alpha_CA_V Carbonic an 100.0 3.6E-45 7.8E-50 326.6 17.8 125 74-200 1-128 (236)
13 cd03117 alpha_CA_IV_XV_like Ca 100.0 1.1E-43 2.4E-48 316.6 17.2 125 74-200 1-126 (234)
14 PLN02179 carbonic anhydrase 100.0 1.7E-42 3.7E-47 309.2 10.9 182 47-252 32-225 (235)
15 cd00326 alpha_CA Carbonic anhy 100.0 4.5E-42 9.8E-47 304.7 11.2 178 74-255 1-190 (227)
16 PLN02202 carbonate dehydratase 100.0 5.7E-41 1.2E-45 306.9 15.6 125 50-200 29-159 (284)
17 COG3338 Cah Carbonic anhydrase 100.0 4.5E-40 9.7E-45 287.5 8.7 154 49-229 25-248 (250)
18 cd03124 alpha_CA_prokaryotic_l 100.0 2.1E-39 4.5E-44 285.8 10.6 169 61-253 1-182 (216)
19 cd03124 alpha_CA_prokaryotic_l 96.2 0.0029 6.4E-08 55.9 2.5 25 204-228 187-215 (216)
20 cd03122 alpha_CARP_receptor_li 95.9 0.0043 9.3E-08 56.2 2.2 17 212-228 236-252 (253)
21 cd03149 alpha_CA_VII Carbonic 95.7 0.0013 2.7E-08 59.1 -2.3 21 233-253 168-190 (236)
22 cd03118 alpha_CA_V Carbonic an 95.5 0.0017 3.6E-08 58.3 -2.3 20 233-252 168-189 (236)
23 COG3338 Cah Carbonic anhydrase 95.4 0.0019 4.2E-08 57.7 -2.0 20 233-252 193-214 (250)
24 cd03120 alpha_CARP_VIII Carbon 95.3 0.002 4.4E-08 58.5 -2.5 20 233-252 183-204 (256)
25 cd03119 alpha_CA_I_II_III_XIII 95.3 0.0022 4.7E-08 58.3 -2.3 21 233-253 191-213 (259)
26 cd03121 alpha_CARP_X_XI_like C 95.2 0.0023 4.9E-08 58.1 -2.3 21 233-253 187-209 (256)
27 cd03126 alpha_CA_XII_XIV Carbo 95.2 0.0023 5E-08 57.8 -2.4 20 233-252 181-202 (249)
28 cd00326 alpha_CA Carbonic anhy 95.1 0.012 2.7E-07 52.3 2.1 25 204-228 193-227 (227)
29 PLN02202 carbonate dehydratase 95.0 0.0027 5.9E-08 58.6 -2.3 21 233-253 205-227 (284)
30 cd03150 alpha_CA_IX Carbonic a 95.0 0.0026 5.6E-08 57.5 -2.6 21 233-253 181-203 (247)
31 cd03123 alpha_CA_VI_IX_XII_XIV 95.0 0.0028 6.1E-08 57.2 -2.3 21 233-253 183-205 (248)
32 cd03125 alpha_CA_VI Carbonic a 94.9 0.0029 6.4E-08 57.2 -2.4 20 233-252 183-204 (249)
33 cd03117 alpha_CA_IV_XV_like Ca 94.9 0.0026 5.5E-08 57.0 -2.9 21 233-253 169-191 (234)
34 KOG0382|consensus 94.6 0.0045 9.7E-08 56.6 -2.2 36 219-254 179-219 (262)
35 PF00194 Carb_anhydrase: Eukar 94.0 0.0041 8.8E-08 56.2 -3.7 19 233-251 188-208 (256)
36 PF05906 DUF865: Herpesvirus-7 32.5 41 0.00088 20.9 1.9 22 16-37 9-30 (35)
37 PF09211 DUF1958: Domain of un 28.8 15 0.00034 26.7 -0.4 17 155-171 9-25 (65)
No 1
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=1.6e-50 Score=365.55 Aligned_cols=147 Identities=36% Similarity=0.591 Sum_probs=132.9
Q ss_pred CceeecccCCCCCCCccccccCCCCCCCCcceecCCcee-ccCCCCceEeCcCCCCceEEEEecCeEEEEeeCC-CCCcE
Q psy6463 50 SKFLQSSILHVRPERWSEDFHQCTGKYQSPIDIEETLVA-RVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTF-KEEPY 127 (259)
Q Consensus 50 ~~w~Y~~~g~~GP~~W~~~~~~C~G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~-~~~~~ 127 (259)
.+|+| ++..||++|+..++.|+|++||||||.+..+. ++.+.+|.+ +|+ .....+|.|+|||+++.+.+ .+.+.
T Consensus 3 ~~w~Y--~~~~gp~~W~~~~~~~~G~~QSPI~I~~~~~~~~~~l~~l~~-~y~-~~~~~~l~N~G~tv~~~~~~~~~~~~ 78 (259)
T cd03119 3 HHWGY--DSHNGPEHWHELFPIAKGDRQSPIDIKTKDAKHDPSLKPLSV-SYD-PATAKTILNNGHSFNVEFDDTDDRSV 78 (259)
T ss_pred cccCC--CCCCCcccccccCcCCCCCCCCCEeEccCeeeEcCCCCceec-ccc-cCcceEEEeCCeeEEEEeCCCCCcce
Confidence 45888 56789999999999899999999999988776 778899998 476 34457999999999999873 34678
Q ss_pred EEcCCCCceEEeeEEEeecCCCCCCCCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEecc
Q psy6463 128 IIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAE 200 (259)
Q Consensus 128 i~GG~L~~~Y~l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~ 200 (259)
+.||+|..+|+|.|||||||+++..||||+|||++|||||||||+|++|.+++||+.+++|||||||||++|+
T Consensus 79 ~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~idg~~~p~E~HlVH~n~~y~~~~~A~~~~~glaVvgvl~~~g~ 151 (259)
T cd03119 79 LRGGPLTGSYRLRQFHFHWGSSDDHGSEHTVDGVKYAAELHLVHWNSKYGSFGEAAKQPDGLAVVGVFLKVGE 151 (259)
T ss_pred EeCCCCCCcEEEEEEEEEeCCCCCCCccceecCccccceEEEEEecccCCCHHHHhcCCCCeEEEEEEEEecc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999987
No 2
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=4.4e-50 Score=361.40 Aligned_cols=176 Identities=41% Similarity=0.689 Sum_probs=145.3
Q ss_pred eeecccCCCCCCCccccccCCCCCCCCcceecCCcee-ccCCCCceEeCcCCCCceEEEEecCeEEEEeeCC-CCCcEEE
Q psy6463 52 FLQSSILHVRPERWSEDFHQCTGKYQSPIDIEETLVA-RVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTF-KEEPYII 129 (259)
Q Consensus 52 w~Y~~~g~~GP~~W~~~~~~C~G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~-~~~~~i~ 129 (259)
|+| ++..||++|++.++.|+|++||||||.+..+. ++.+++|.|.+++ ....++.|+||+++|.++. .....+.
T Consensus 1 W~Y--~~~~gp~~W~~~~~~~~G~~QSPInI~~~~~~~~~~l~~l~~~~~~--~~~~~~~N~G~tv~v~~~~~~~~~~i~ 76 (256)
T PF00194_consen 1 WGY--SGNNGPENWPKLYPCCGGKRQSPININTSEAVYDPSLPPLKFSYYE--SSAGTLKNNGHTVQVNFDDTNNKPTIS 76 (256)
T ss_dssp CSS--STTTSGGGHHHTSGGGGSSS-S-BEE-GGGSEEETTSEEEEEESTT--SGEEEEEE-SSSEEEEECTSSSSSEEE
T ss_pred CcC--CCCCChhhhhhhCcccCCCccCCEeeCcCccccccCCCCcEEeecc--ccceEEEecCceEEEEeCCCcccceec
Confidence 777 56789999999999999999999999999887 7788899998654 3445999999999999984 4578899
Q ss_pred cCCCCceEEeeEEEeecCCCCCCCCccccCCccCcceeeeeeee-cCCCChhhhhcCCCCeEEEEEEEEecc--------
Q psy6463 130 GGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYN-KDYDSSDRAQGYKDGLVVLASFFELAE-------- 200 (259)
Q Consensus 130 GG~L~~~Y~l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n-~~y~s~~eA~~~~~glaVlavf~~~g~-------- 200 (259)
||+|.++|+|.|||||||+++..||||+|||++|||||||||++ ++|.+++||.+.++++||||+|+++++
T Consensus 77 g~~l~~~Y~l~q~HfHwg~~~~~gSEH~idG~~y~~E~H~Vh~~~~~y~~~~~a~~~~~~laVl~v~~~~~~~n~~l~~i 156 (256)
T PF00194_consen 77 GGPLPGEYRLEQFHFHWGSDNSSGSEHTIDGKRYPMEMHFVHRNSKKYSSFEEASKEPDGLAVLGVFFEIGESNPFLQPI 156 (256)
T ss_dssp ETTESSEEEEEEEEEEESSSTTSSSSSEETTBE-SEEEEEEEEETTTGSSHHHHTTSTTSEEEEEEEEEESS--GHHHHH
T ss_pred CCCccceEEEEEEEEecccCCCCccccchhhhhcccceeeeeeccccccchhhhhhccccceEEEEEeeccccccccchh
Confidence 99999999999999999999999999999999999999999999 699999999999999999999999987
Q ss_pred ---cc---------------------c-------------------------------hHHHH---h-----------hh
Q psy6463 201 ---FR---------------------H-------------------------------LHKKA---N-----------KY 211 (259)
Q Consensus 201 ---L~---------------------~-------------------------------S~~Ql---~-----------~~ 211 (259)
|+ . |.+|| . ..
T Consensus 157 ~~~l~~i~~~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTtPpCtE~V~W~V~~~pi~is~~Ql~~f~~~~~~~~~~~~~~ 236 (256)
T PF00194_consen 157 LDALPNIPYPGSSTPIQSFSLSDLLPSTRSYYRYNGSLTTPPCTEGVTWIVFKEPIPISQDQLNKFRKLLGNNNGEEFAP 236 (256)
T ss_dssp HHHGGGGTSTTEEEEEESBBGGGGSCSSSSEEEEEEE-SSTTSSSEEEEEEESSEEEEEHHHHHHHHTSBSSCTTSSECB
T ss_pred hhhhhhccccccccccccccccccCCCCCCEEEEcccccCCCcceeEEEEEeeeEEEEeHHHHHHHHHHhhcccCCcccc
Confidence 11 0 99998 1 24
Q ss_pred ccCCCCCCcCCCCCcEEEcc
Q psy6463 212 LTHNSRPVQPLSGRPIWYNA 231 (259)
Q Consensus 212 l~~N~Rp~QpLn~R~V~~~~ 231 (259)
|.+|+||+||||||.|+++|
T Consensus 237 ~~~N~Rp~QpLn~R~V~~sf 256 (256)
T PF00194_consen 237 LVNNFRPVQPLNGRKVYASF 256 (256)
T ss_dssp SSS-S---B--TTS-EEESS
T ss_pred CCCCcCCCCCCCCcEEEeCC
Confidence 67899999999999999987
No 3
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=4.3e-49 Score=354.04 Aligned_cols=137 Identities=37% Similarity=0.651 Sum_probs=123.8
Q ss_pred CCCCccccccCCCCCCCCcceecCCcee-ccCCCCceEeCcCCCCc-eEEEEecCeEEEEeeCCCCCcEEEcCCCCceEE
Q psy6463 61 RPERWSEDFHQCTGKYQSPIDIEETLVA-RVSLPELKFFGFDQEPT-STVITNNGHTVMLNPTFKEEPYIIGGPLGFKYV 138 (259)
Q Consensus 61 GP~~W~~~~~~C~G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~-~~~i~N~Ghtv~v~~~~~~~~~i~GG~L~~~Y~ 138 (259)
||++|++.++.|+|++||||||.+..+. +..+++|.|.+|+..+. .++|.|+|||++|.+. +...+.||+ ..+|+
T Consensus 1 ~~~~W~~~~~~c~G~~QSPIdI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~--~~~~~~~g~-~~~Y~ 77 (247)
T cd03150 1 GQPPWPSVSPACAGRFQSPVDIRPHLVAFCPALRPLELLGFDLPPSPSLRLLNNGHTVQLSLP--SGLRMALGP-GQEYR 77 (247)
T ss_pred CCCcccccCCCCCCCCcCCEeeccCceeECCCCCCceeeccccCCCCceEEEECCEEEEEEEe--cccccccCC-CCcEE
Confidence 5789999999999999999999998876 77899999987873233 5799999999999987 345667765 68999
Q ss_pred eeEEEeecCCCCCCCCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEecc
Q psy6463 139 FSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAE 200 (259)
Q Consensus 139 l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~ 200 (259)
|.|||||||+++..||||+|||++|||||||||+|++|.+++||+++++|||||||||++|+
T Consensus 78 l~QfHfHwG~~~~~gSEH~idg~~yp~E~HlVH~n~~y~~~~~A~~~~~glaVl~v~~~~g~ 139 (247)
T cd03150 78 ALQLHLHWGAAGRPGSEHTVDGHRFPAEIHVVHLSTAFANLDEALGRPGGLAVLAAFLAEGL 139 (247)
T ss_pred EEEEEEEeCCCCCCCcceeeCCcccchhhheeeecccCCCHHHHhcCCCCcEEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 4
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=3.4e-48 Score=348.59 Aligned_cols=136 Identities=40% Similarity=0.687 Sum_probs=121.0
Q ss_pred CCCCccccccCCCCCCCCcceecCCcee-ccCCCCceEeCcCCC-CceEEEEecCeEEEEeeCCCCCcEEEcCCCCceEE
Q psy6463 61 RPERWSEDFHQCTGKYQSPIDIEETLVA-RVSLPELKFFGFDQE-PTSTVITNNGHTVMLNPTFKEEPYIIGGPLGFKYV 138 (259)
Q Consensus 61 GP~~W~~~~~~C~G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~-~~~~~i~N~Ghtv~v~~~~~~~~~i~GG~L~~~Y~ 138 (259)
||++|++.|+.|+|++||||||.+..+. +..+++|.|.+|+.. ...++|.|+|||+++.+. +.+.+ ++|+.+|+
T Consensus 1 gp~~W~~~~~~C~G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~l~N~Ghtv~v~~~--~~~~~--~~l~~~Y~ 76 (249)
T cd03126 1 GENSWPKKYPFCGGVAQSPIDIHTDILQYDSSLPPLEFHGYNVSGTEQFTLTNNGHTVQLSLP--PTMHI--GGLPFKYT 76 (249)
T ss_pred CCCcccccCCCCCCCccCCEeEecCceeECCCCCccEEeccccCCCCceEEEECCEeEEEEEc--CCcee--cCCCccEE
Confidence 7899999999999999999999998776 788999999888732 235899999999999987 34444 45678999
Q ss_pred eeEEEeecCCCCC-CCCccccCCccCcceeeeeeeec-CCCChhhhhcCCCCeEEEEEEEEecc
Q psy6463 139 FSQLHFHWGVNDS-VGSEDLINNRSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFELAE 200 (259)
Q Consensus 139 l~q~HFHwgs~~~-~GSEHtIdG~~~p~ElH~VH~n~-~y~s~~eA~~~~~glaVlavf~~~g~ 200 (259)
|.|||||||+++. .||||+|||++|||||||||+|. +|.+++||+++++|||||||||++|+
T Consensus 77 l~qfHfHwG~~~~~~gSEH~idG~~y~~E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~~g~ 140 (249)
T cd03126 77 ASQLHLHWGQRGSPEGSEHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQGLAVLGILIEVGP 140 (249)
T ss_pred EEEEEEEeCCCCCCCCceeeecCcccCceEEEEEecCccCCCHHHHhhcCCCeEEEEEEEEecC
Confidence 9999999999654 89999999999999999999998 89999999999999999999999987
No 5
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=4.2e-48 Score=349.26 Aligned_cols=138 Identities=30% Similarity=0.544 Sum_probs=124.8
Q ss_pred CCCCcccccc---CCC-CCCCCcceecCCcee-ccCCCCceEeCcCCCCceEEEEecCeEEEEeeCCCCCcEEEcCCCCc
Q psy6463 61 RPERWSEDFH---QCT-GKYQSPIDIEETLVA-RVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTFKEEPYIIGGPLGF 135 (259)
Q Consensus 61 GP~~W~~~~~---~C~-G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~~~~~~i~GG~L~~ 135 (259)
||++|+..++ .|. |++||||||.+..+. +..+++|.|.++. +...+|.|+||||++.+..+..+.+.||+|..
T Consensus 1 GP~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~~l~~L~~~~~~--~~~~~l~N~Ghtv~v~~~~~~~~~i~gG~l~~ 78 (256)
T cd03121 1 GPSFWGLVNSAWNLCSKGRRQSPVDIEPSRLLFDPFLTPLRIDTGR--KVSGTFYNTGRHVSFRPDKDPVVNISGGPLSY 78 (256)
T ss_pred CCCcccccCCchhhccCCCCcCCEeEeccceEECCCCCceeeccCC--CCceEEEECCEEEEEEECCCCceEEeCCCCCC
Confidence 7999988655 784 999999999998776 7788999998662 35689999999999998754567888999999
Q ss_pred eEEeeEEEeecCCCCCCCCccccCCccCcceeeeeeeec-CCCChhhhhcCCCCeEEEEEEEEecc
Q psy6463 136 KYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFELAE 200 (259)
Q Consensus 136 ~Y~l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n~-~y~s~~eA~~~~~glaVlavf~~~g~ 200 (259)
+|+|.|||||||+++..||||+|||++|||||||||+|. +|.+++||+++++|+|||||||++|+
T Consensus 79 ~Y~l~Q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVvgv~~~~g~ 144 (256)
T cd03121 79 RYRLEEIRLHFGREDEQGSEHTVNGQAFPGEVQLIHYNSELYPNFSEASKSPNGLVIVSLFVKIGE 144 (256)
T ss_pred cEEEEEEEEecCCCCCCCCceeeCCcccCceEEEEEEcccccCCHHHHhcCCCCeEEEEEEEeecc
Confidence 999999999999999999999999999999999999998 89999999999999999999999985
No 6
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=3.7e-48 Score=348.12 Aligned_cols=136 Identities=43% Similarity=0.734 Sum_probs=122.3
Q ss_pred CCCCccccccCCCCCCCCcceecCCcee-ccCCCCceEeCcCCCCc-eEEEEecCeEEEEeeCCCCCcEEEcCCCCceEE
Q psy6463 61 RPERWSEDFHQCTGKYQSPIDIEETLVA-RVSLPELKFFGFDQEPT-STVITNNGHTVMLNPTFKEEPYIIGGPLGFKYV 138 (259)
Q Consensus 61 GP~~W~~~~~~C~G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~-~~~i~N~Ghtv~v~~~~~~~~~i~GG~L~~~Y~ 138 (259)
||++|++.++.|+|++||||||.+..+. +..+++|.|.+|+..+. .++|.|+|||++|.+. +...+.||+ ..+|+
T Consensus 1 ~p~~W~~~~~~C~G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~--~~~~~~gg~-~~~Y~ 77 (248)
T cd03123 1 GEDHWPKKYPACGGKRQSPIDIQTDIVQFDPSLPPLELVGYDLPGTEEFTLTNNGHTVQLSLP--PTMHIRGGP-GTEYT 77 (248)
T ss_pred CCCcccccCcCCCCCCCCCEeEeccceeecCCCCcceecccccCCCCceEEEECCeeEEEEeC--CCccccCCC-CCCEE
Confidence 6899999999999999999999998876 77899999987873233 6899999999999987 345666665 47999
Q ss_pred eeEEEeecCCCC-CCCCccccCCccCcceeeeeeeec-CCCChhhhhcCCCCeEEEEEEEEec
Q psy6463 139 FSQLHFHWGVND-SVGSEDLINNRSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFELA 199 (259)
Q Consensus 139 l~q~HFHwgs~~-~~GSEHtIdG~~~p~ElH~VH~n~-~y~s~~eA~~~~~glaVlavf~~~g 199 (259)
|.|||||||+.+ ..||||+|||++|||||||||++. +|.++++|++.++++|||||||++|
T Consensus 78 l~qfHfHwG~~~~~~gSEH~idG~~yp~E~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~~~ 140 (248)
T cd03123 78 AAQLHLHWGGRGSLSGSEHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPDGLAVLAILIEVG 140 (248)
T ss_pred EEEEEEeeCCCCCCCCccceecCccCcceeEEEEEcccccCCHHHHhcCCCCeEEEEEEEEec
Confidence 999999999988 589999999999999999999998 8999999999999999999999999
No 7
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=4.7e-48 Score=347.72 Aligned_cols=137 Identities=41% Similarity=0.690 Sum_probs=121.8
Q ss_pred CCCCccccccCCCCCCCCcceecCCcee-ccCCCCceEeCcCCCCceEEEEecCeEEEEeeCCCCCcEEEcCCCCceEEe
Q psy6463 61 RPERWSEDFHQCTGKYQSPIDIEETLVA-RVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTFKEEPYIIGGPLGFKYVF 139 (259)
Q Consensus 61 GP~~W~~~~~~C~G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~~~~~~i~GG~L~~~Y~l 139 (259)
+|++|++.|+.|+|++||||||.+..+. +..+++|.|.+|+..+..++|.|+||||+|.+. +...++|+ +..+|+|
T Consensus 1 ~~~~W~~~~~~C~G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~i~N~Ghtv~v~~~--~~~~~~~~-~~~~Y~l 77 (249)
T cd03125 1 DESHWPEKYPACGGKRQSPIDIQRREVRFNPSLLQLELVGYEKEQGEFTMTNNGHTVQIDLP--PTMSITTG-DGTVYTA 77 (249)
T ss_pred CCCcccccCcCCCCCCCCCEeEccCceeECCCCCceEeecccCCCccEEEEECCEEEEEEeC--CCcccccC-CCCCEEE
Confidence 4789999999999999999999998876 788999999878733456899999999999987 33445554 5689999
Q ss_pred eEEEeecCCCCC--CCCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEecc
Q psy6463 140 SQLHFHWGVNDS--VGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAE 200 (259)
Q Consensus 140 ~q~HFHwgs~~~--~GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~ 200 (259)
.|||||||+++. .||||+|||++|||||||||+|.+|.+++||++.++|||||||||++|+
T Consensus 78 ~q~HFHWG~~~~~~~gSEH~idG~~yp~E~HlVH~n~~y~~~~~a~~~~~glaVl~v~~~~~~ 140 (249)
T cd03125 78 VQMHFHWGGRDSEISGSEHTIDGMRYVAELHIVHYNSKYKSYEEAKDKPDGLAVLAFLYKVGH 140 (249)
T ss_pred EEEEEEecCCCCCCCCccceeccccCCceEEEEEecCCCCCHHHHhcCCCceEEEEEEEEecc
Confidence 999999999875 7999999999999999999999999999999999999999999999984
No 8
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=2.3e-48 Score=350.37 Aligned_cols=193 Identities=29% Similarity=0.506 Sum_probs=152.5
Q ss_pred CCCCccccccCCC-CCCCCcceecCCcee-ccCCCCceEeCcCCCCceEEEEecCeEEEEeeC-CCCCcEEEcCCCCceE
Q psy6463 61 RPERWSEDFHQCT-GKYQSPIDIEETLVA-RVSLPELKFFGFDQEPTSTVITNNGHTVMLNPT-FKEEPYIIGGPLGFKY 137 (259)
Q Consensus 61 GP~~W~~~~~~C~-G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~-~~~~~~i~GG~L~~~Y 137 (259)
||++|+..|+.|+ |++||||||.+..+. ...+++|.|.+|+..+..++|.|+||||++.+. +++.+.+.||+|..+|
T Consensus 1 gp~~W~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~~~~~l~N~Ghtv~v~~~~~~~~~~i~gg~l~~~Y 80 (253)
T cd03122 1 NPKHWAKKYPACGEGRQQSPIDIVEDTQVQRQGLQPLHFDGYEELTASTTLENTGKTVILRLEGNSSDPFVSGGPLLGRY 80 (253)
T ss_pred CcccccccCCcCCCCCCCCCEeEeecceeccCCCCCeEEeccCCCCCceEEEECCeEEEEEecCCCCceEEeCCCCCCcE
Confidence 7999999999997 999999999986444 333899999987634457899999999999987 3357899999999999
Q ss_pred EeeEEEeecCCCCCCCCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEeccccc-hHHH----Hhhh-
Q psy6463 138 VFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAEFRH-LHKK----ANKY- 211 (259)
Q Consensus 138 ~l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~L~~-S~~Q----l~~~- 211 (259)
+|.|||||||+++..||||+|||++|||||||||+|.+|.+..||+++++|+|||||||++|+-.. ..+. +...
T Consensus 81 ~l~q~HFHwG~~~~~gSEH~idg~~yp~E~H~VH~n~~~~~~~~A~~~~~~laVv~vl~~~g~~~n~~l~~i~~~l~~i~ 160 (253)
T cd03122 81 KFSEITFHWGTCNSDGSEHSIDGHKFPLEMQILHRNTDFFDSFEAIKSPGGVLALAYLFELSHEDNPFLDPIIEGLRNVS 160 (253)
T ss_pred EEEEEEEEeCCCCCCCCceeecCccCcceEEEEEEcCCCCCHHHHhhcCCCeEEEEEEEEEecCCCHhHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998888899999999999999999984111 1111 2111
Q ss_pred ccCCCCCCcCCCCCcEEEcc---cccccccCCCCCch--HHHHHHHH
Q psy6463 212 LTHNSRPVQPLSGRPIWYNA---ADEFSESSTLRPTL--FGITMLLS 253 (259)
Q Consensus 212 l~~N~Rp~QpLn~R~V~~~~---~~~y~gs~t~p~c~--~~~~~~~~ 253 (259)
......++..++-+.++... -++|.||||||||+ +.|+|+.-
T Consensus 161 ~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~ 207 (253)
T cd03122 161 RPGKEVELPPFPLSDLLPPFTDKYYSYEGSLTTPPCSETVEWIVFRE 207 (253)
T ss_pred CCCcEEEcCCCCHHHHhccccCCeEEEeeeccCCCCcCceEEEEeCc
Confidence 11122233344444443322 27999999999999 88887643
No 9
>KOG0382|consensus
Probab=100.00 E-value=2.1e-46 Score=338.71 Aligned_cols=178 Identities=34% Similarity=0.602 Sum_probs=153.7
Q ss_pred ceeecccCCCCCCCccccccCCCCCCCCcceecCCcee-cc-CCCCceEeCcCCCCceEEEEecCeEEEEeeC-CCCCcE
Q psy6463 51 KFLQSSILHVRPERWSEDFHQCTGKYQSPIDIEETLVA-RV-SLPELKFFGFDQEPTSTVITNNGHTVMLNPT-FKEEPY 127 (259)
Q Consensus 51 ~w~Y~~~g~~GP~~W~~~~~~C~G~~QSPInI~~~~~~-~~-~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~-~~~~~~ 127 (259)
.|.| ..+..||.+|+..++.|+|++||||||....+. ++ .+.++.+. |+ ......+.|||++..|.+. ..+.+.
T Consensus 4 ~~~~-~~~~~gp~~W~~~~~~~~g~~QSPIdi~~~~~~~~~~~l~~~~~~-~~-~~~~~~~~nng~~~~v~~~~~~~~~~ 80 (262)
T KOG0382|consen 4 FWYY-EKGNKGPEHWGKLYPEWKGKRQSPIDIKRSQIVYDPDPLKPLRLS-YE-YKPCNAVLNNGHSRGVDIMLKGGKPE 80 (262)
T ss_pred eeEE-eccccCCccccccCcCcCCCccCCccCccceeeecCccccceeee-cc-cCcceEEEeCCceEEEEeecCCCCcc
Confidence 4666 467789999999999999999999999999887 66 56666664 55 4556889999976666665 234788
Q ss_pred EEcCCCCc-eEEeeEEEeecCCCCCCCCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEecc------
Q psy6463 128 IIGGPLGF-KYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAE------ 200 (259)
Q Consensus 128 i~GG~L~~-~Y~l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~------ 200 (259)
++||+|.+ +|++.|+|||||+.++.||||||||++|+||||+||+|.+|.+++||+++++||||||||+++|+
T Consensus 81 i~gg~l~~~~y~~~q~hfHWg~~~~~GSEHti~g~~f~~ElHlVH~n~~y~~~~eA~~~p~GlAVv~vf~k~g~~~n~~l 160 (262)
T KOG0382|consen 81 ITGGPLPGIRYRLEQLHFHWGSPDSKGSEHTINGRRFPAELHLVHWNTKYENFKEALSKPDGLAVVGVFLKIGKEENPFL 160 (262)
T ss_pred eecCCCCCcceeEEEeEeecCCCCCCCCceecCCeecccEEEEEEeccccCCHHHHhcCCCcEEEEEEeecccCCCChhH
Confidence 99999988 89999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ------c---------------------cc--------------------------------hHHHH-----------hh
Q psy6463 201 ------F---------------------RH--------------------------------LHKKA-----------NK 210 (259)
Q Consensus 201 ------L---------------------~~--------------------------------S~~Ql-----------~~ 210 (259)
| |. |.+|| ++
T Consensus 161 ~~l~~~L~~I~~k~~~~~l~~f~~~~llp~~~~~y~tY~GSLTTPPC~E~VtW~V~~~p~~is~~Ql~~~r~l~~~~~~~ 240 (262)
T KOG0382|consen 161 SKLTDALKRIKYKGQSTTLPGFDPSELLPKSTRDYYTYEGSLTTPPCSESVTWTVFREPVTVSREQLEKFRNLLFDEEGE 240 (262)
T ss_pred HHHHHHhhccccCCcccccCCCCHHHhcCccCCceEEEEeeccCCCCCCCEEEEEcCceeecCHHHHHHHHHHhhCcccc
Confidence 0 10 88888 23
Q ss_pred hccCCCCCCcCCCCCcEEEcc
Q psy6463 211 YLTHNSRPVQPLSGRPIWYNA 231 (259)
Q Consensus 211 ~l~~N~Rp~QpLn~R~V~~~~ 231 (259)
.|.+||||+||||+|.|+.++
T Consensus 241 ~~~~N~Rp~Qpln~R~V~~~~ 261 (262)
T KOG0382|consen 241 PLVNNFRPLQPLNGRVVRASF 261 (262)
T ss_pred cccccCCcCcCCCCCeEeccc
Confidence 488999999999999999876
No 10
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=4.4e-46 Score=336.10 Aligned_cols=134 Identities=30% Similarity=0.613 Sum_probs=119.4
Q ss_pred CCccccccCCCCCCCCcceecCCcee-ccCCC--CceEeCcCCCCceEEEEecCeEEEEeeCCCCCcEEEcCCCC--ceE
Q psy6463 63 ERWSEDFHQCTGKYQSPIDIEETLVA-RVSLP--ELKFFGFDQEPTSTVITNNGHTVMLNPTFKEEPYIIGGPLG--FKY 137 (259)
Q Consensus 63 ~~W~~~~~~C~G~~QSPInI~~~~~~-~~~l~--~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~~~~~~i~GG~L~--~~Y 137 (259)
.+|+..++.|+|++||||||.+..+. ++.+. +|.+ +|+ ....++|.|+|||++|.+. +...+.||+|. .+|
T Consensus 2 ~~W~~~~~~c~G~~QSPInI~~~~~~~~~~~~~~~l~~-~y~-~~~~~~l~N~Ghtv~v~~~--~~~~~~gg~l~~~~~Y 77 (256)
T cd03120 2 VEWGLLFPEANGEYQSPINLNSREARYDPSLLEVRLSP-NYV-VCRDCEVINDGHTIQIILK--SKSVLSGGPLPQGHEF 77 (256)
T ss_pred CcccccCCCCCCCcCCCccCccCceEECCCCCccccee-ccC-CCCceEEEECCeEEEEEeC--CCceeecCCCCCCceE
Confidence 68999999999999999999998776 66676 4666 465 3346899999999999987 34678899985 689
Q ss_pred EeeEEEeecCCCCCCCCccccCCccCcceeeeeeeec-CCCChhhhhcCCCCeEEEEEEEEecc
Q psy6463 138 VFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFELAE 200 (259)
Q Consensus 138 ~l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n~-~y~s~~eA~~~~~glaVlavf~~~g~ 200 (259)
+|.|||||||+++..||||+|||++|||||||||+|. +|.++++|++.++|||||||||++|+
T Consensus 78 ~l~q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~ 141 (256)
T cd03120 78 ELAEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLYSSLEEAMGKPHGIAIIALFVQIGK 141 (256)
T ss_pred EEEEEEEEeCCCCCCCCceeecCccccceEEEEEecCcccCCHHHHhcCCCceEEEEEEEeecC
Confidence 9999999999999999999999999999999999998 79999999999999999999999987
No 11
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=2.5e-45 Score=327.68 Aligned_cols=125 Identities=40% Similarity=0.682 Sum_probs=114.3
Q ss_pred CCCCCcceecCCcee-ccCCCCceEeCcCCCCceEEEEecCeEEEEeeCC-CCCcEEEcCCCCceEEeeEEEeecCCCCC
Q psy6463 74 GKYQSPIDIEETLVA-RVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTF-KEEPYIIGGPLGFKYVFSQLHFHWGVNDS 151 (259)
Q Consensus 74 G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~-~~~~~i~GG~L~~~Y~l~q~HFHwgs~~~ 151 (259)
|++||||||.+..+. +..+++|.+. |+ .+..+++.|+|||+++.+.+ ++.+.+.||+|.++|+|.|||||||+++.
T Consensus 1 G~~QSPInI~~~~~~~~~~l~~l~~~-y~-~~~~~~~~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~ 78 (236)
T cd03149 1 GNRQSPIDIVSSEAVYDPKLKPLSLS-YD-PCTSLSISNNGHSVMVEFDDSDDKTVITGGPLENPYRLKQFHFHWGAKHG 78 (236)
T ss_pred CCCCCCeeEccCceEECCCCCceEee-cC-CCcceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEecCCCCC
Confidence 789999999998876 7789999985 66 34468999999999999873 45688899999999999999999999999
Q ss_pred CCCccccCCccCcceeeeeeeec-CCCChhhhhcCCCCeEEEEEEEEecc
Q psy6463 152 VGSEDLINNRSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFELAE 200 (259)
Q Consensus 152 ~GSEHtIdG~~~p~ElH~VH~n~-~y~s~~eA~~~~~glaVlavf~~~g~ 200 (259)
.||||+|||++|||||||||+|. +|.|+++|+++++|+|||||||++|+
T Consensus 79 ~gSEH~idg~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~ 128 (236)
T cd03149 79 SGSEHTVDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLETGD 128 (236)
T ss_pred CCCceeecCeeccceeeeeEecccccCCHHHHhhccCCcEEEEEEEEecC
Confidence 99999999999999999999998 79999999999999999999999987
No 12
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=3.6e-45 Score=326.62 Aligned_cols=125 Identities=35% Similarity=0.604 Sum_probs=113.3
Q ss_pred CCCCCcceecCCcee-ccCCCCceEeCcCCCCceEEEEecCeEEEEeeCC-CCCcEEEcCCCCceEEeeEEEeecCCCCC
Q psy6463 74 GKYQSPIDIEETLVA-RVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTF-KEEPYIIGGPLGFKYVFSQLHFHWGVNDS 151 (259)
Q Consensus 74 G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~-~~~~~i~GG~L~~~Y~l~q~HFHwgs~~~ 151 (259)
|++||||||.+..+. +..+++|.|. |+ .+..++|.|+||||++.+.. .....+.||+|..+|+|.|||||||+++.
T Consensus 1 G~~QSPIdI~~~~~~~~~~l~~l~~~-y~-~~~~~~l~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~ 78 (236)
T cd03118 1 GTRQSPINIQWRDSVYDPQLAPLRVS-YD-PATCLYIWNNGYSFQVEFDDSTDKSGISGGPLENHYRLKQFHFHWGANNE 78 (236)
T ss_pred CCcCCCeeEecCceeECCCCCceEEe-cC-CCCceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEEECCCCC
Confidence 789999999988776 7788999985 65 34457999999999999873 34577889999999999999999999999
Q ss_pred CCCccccCCccCcceeeeeeeec-CCCChhhhhcCCCCeEEEEEEEEecc
Q psy6463 152 VGSEDLINNRSYPMELHMVFYNK-DYDSSDRAQGYKDGLVVLASFFELAE 200 (259)
Q Consensus 152 ~GSEHtIdG~~~p~ElH~VH~n~-~y~s~~eA~~~~~glaVlavf~~~g~ 200 (259)
.||||+|||++|||||||||+|. +|.++++|+++++|||||||||++|+
T Consensus 79 ~gSEH~idg~~~p~E~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~~g~ 128 (236)
T cd03118 79 WGSEHTVDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAVIGVFLKLGA 128 (236)
T ss_pred CCCceEECCEeccceeeEEEEcccccCCHHHHhcCCCCeEEEEEEEEecC
Confidence 99999999999999999999998 89999999999999999999999987
No 13
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=1.1e-43 Score=316.64 Aligned_cols=125 Identities=45% Similarity=0.653 Sum_probs=115.5
Q ss_pred CCCCCcceecCCcee-ccCCCCceEeCcCCCCceEEEEecCeEEEEeeCCCCCcEEEcCCCCceEEeeEEEeecCCCCCC
Q psy6463 74 GKYQSPIDIEETLVA-RVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSV 152 (259)
Q Consensus 74 G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~~~~~~i~GG~L~~~Y~l~q~HFHwgs~~~~ 152 (259)
|++||||||.+..+. +..+++|.|.+|+..+...+|.|+|||+++.+. +.+.+.||+|+.+|+|.|||||||+++..
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~L~~~~y~~~~~~~~l~N~G~tv~v~~~--~~~~i~gg~L~~~Y~l~qfHfH~G~~~~~ 78 (234)
T cd03117 1 GKRQSPINIVTKKVQYDENLTPFTFTGYDDTTTNWTITNNGHTVQVTLP--DGAKISGGGLPGTYKALQFHFHWGSNGSP 78 (234)
T ss_pred CCcCCCEEEcccceEECCCCCcceeccccCCCCceEEEECCeEEEEEec--CCceEeCCCCCCcEEEEEEEEEeCCCCCC
Confidence 789999999998776 778999999778622467899999999999987 37889999999999999999999999999
Q ss_pred CCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEecc
Q psy6463 153 GSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAE 200 (259)
Q Consensus 153 GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~ 200 (259)
||||+|||++|||||||||++.+|.+++||++.++++|||||||++++
T Consensus 79 gSEH~idg~~~~~E~HlVH~n~~~~~~~~A~~~~~~laVv~vl~~~~~ 126 (234)
T cd03117 79 GSEHTIDGERYPMELHIVHIKESYNSLLEALKDSDGLAVLGFFIEEGE 126 (234)
T ss_pred CCcceeCCeecchheeeeEecCCCCCHHHHhcCCCceEEEEEEEEecC
Confidence 999999999999999999999999999999999999999999999993
No 14
>PLN02179 carbonic anhydrase
Probab=100.00 E-value=1.7e-42 Score=309.20 Aligned_cols=182 Identities=26% Similarity=0.362 Sum_probs=130.7
Q ss_pred CCCCceeecccCCCCCCCcccccc---CCC-CCCCCcceecCCceeccCCCCceEeCcCCCCceEEEEecCeEEEEeeC-
Q psy6463 47 GSESKFLQSSILHVRPERWSEDFH---QCT-GKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVMLNPT- 121 (259)
Q Consensus 47 ~~~~~w~Y~~~g~~GP~~W~~~~~---~C~-G~~QSPInI~~~~~~~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~- 121 (259)
..+.+|+|.+++..||++|++.++ .|+ |++||||||.++.+.....++|.+. |. +...+|.|+|||+++.+.
T Consensus 32 ~~~~~w~Y~~~~~~Gp~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~~~l~~~-y~--~~~~~i~N~Ghtv~v~~~~ 108 (235)
T PLN02179 32 GNKPLFTYKQKTEKGPAEWGKLNPQWKVCSTGKYQSPIDLTDERVSLIHDQALSRH-YK--PAPAVIQSRGHDVMVSWKG 108 (235)
T ss_pred cCCCCCCcCCCCCCCchhhhhcChhhhhccCCCcCCCEEeeccccccccCCCcccc-cC--CccEEEEECCeEEEEEecC
Confidence 456889997667899999998544 595 9999999999875432222456664 54 456899999999999986
Q ss_pred CCCCcEEEcCCCCceEEeeEEEeecCCCCCCCCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEeccc
Q psy6463 122 FKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAEF 201 (259)
Q Consensus 122 ~~~~~~i~GG~L~~~Y~l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~L 201 (259)
+.+.+.+.| .+|+|.|||||||| ||+|||++|||||||||++++ +++|||||||++|+-
T Consensus 109 ~~~~~~i~g----~~Y~L~QfHFH~gS------EH~InG~~yp~E~H~VH~n~~-----------g~laVlgvl~~~g~~ 167 (235)
T PLN02179 109 DAGKITIHQ----TDYKLVQCHWHSPS------EHTINGTSYDLELHMVHTSAS-----------GKTAVVGVLYKLGEP 167 (235)
T ss_pred CCCeeEecC----cEEEEEEEEecCCc------ceEecccccCeeEEEEEEcCC-----------CCeEEEEEEEecCCC
Confidence 345566654 79999999999987 999999999999999999874 789999999999861
Q ss_pred cchHHHHhhh---ccCCCCCCcCCCCCcEEEcc--cccccccCCCCCch--HHHHHHH
Q psy6463 202 RHLHKKANKY---LTHNSRPVQPLSGRPIWYNA--ADEFSESSTLRPTL--FGITMLL 252 (259)
Q Consensus 202 ~~S~~Ql~~~---l~~N~Rp~QpLn~R~V~~~~--~~~y~gs~t~p~c~--~~~~~~~ 252 (259)
....+++-+. ......+++.++-+.+.... -++|.||||||||+ +.|+|+.
T Consensus 168 n~~l~~il~~l~~~~~~~~~~~~l~~~~llp~~~~yy~Y~GSLTTPPC~E~V~WiV~~ 225 (235)
T PLN02179 168 DEFLTKLLNGIKGVGKKEINLGIVDPRDIRFETNNFYRYIGSLTIPPCTEGVIWTVVK 225 (235)
T ss_pred CHHHHHHHHhhhcccCcceeecccCHHHhCcCCCCEEEEecccCCCCCCCceEEEEec
Confidence 1122233111 11111223333322222211 27999999999999 8887653
No 15
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=100.00 E-value=4.5e-42 Score=304.74 Aligned_cols=178 Identities=36% Similarity=0.523 Sum_probs=141.2
Q ss_pred CCCCCcceecCCcee-ccCCCCceEeCcCCCCceEEEEecCeEEEEeeCCCCCcEEEcCCCCceEEeeEEEeecCCCCCC
Q psy6463 74 GKYQSPIDIEETLVA-RVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSV 152 (259)
Q Consensus 74 G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~~~~~~i~GG~L~~~Y~l~q~HFHwgs~~~~ 152 (259)
|++||||||.+..+. +..+++|.+.+|. ....++.|+|||+++.+.. ....+++++|..+|+|.|||||||+++.+
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~l~~~~~~--~~~~~i~N~G~tv~~~~~~-~~~~i~~~~l~~~y~l~q~HfH~G~~~~~ 77 (227)
T cd00326 1 GKRQSPINIVTSAVVYDPSLPPLNFDYYP--TTSLTLVNNGHTVQVNFDD-DGGTLSGGGLPGRYKLVQFHFHWGSENSP 77 (227)
T ss_pred CCCcCCeEECccceeECCCCCceeecccC--CCceEEEECCeeEEEEecC-CCceEeCCCCCCCEEEEEEEEecCCCCCC
Confidence 789999999998776 6679999998653 4578999999999999973 35678899999999999999999999999
Q ss_pred CCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEeccccc-hHHHH----h-hhccCCCCCCcCCCCCc
Q psy6463 153 GSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAEFRH-LHKKA----N-KYLTHNSRPVQPLSGRP 226 (259)
Q Consensus 153 GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~L~~-S~~Ql----~-~~l~~N~Rp~QpLn~R~ 226 (259)
||||+|||++|||||||||++.+|.++ ||.++++++|||||||+++.-.. ..+.+ . .....+..++.+++-..
T Consensus 78 gSEH~i~g~~y~~E~H~Vh~~~~~~~~-~a~~~~~~laVv~v~~~~~~~~n~~l~~i~~~l~~~~~~~~~~~~~~~~l~~ 156 (227)
T cd00326 78 GSEHTIDGKRYPLELHLVHYNSDYYSS-EAAKKPGGLAVLGVFFEVGEKENPFLKKILDALPKIKYKGKETTLPPFDLSD 156 (227)
T ss_pred CCcceeCCEeccccceEEEECCCCCCh-hhhccCCCeEEEEEEEEecccCChhHHHHHHHHHhcCcCCcEeecCCCCHHH
Confidence 999999999999999999999999888 99999999999999999983111 11122 1 11123344455554444
Q ss_pred EEEcc-c--ccccccCCCCCch--HHHHHHHHhh
Q psy6463 227 IWYNA-A--DEFSESSTLRPTL--FGITMLLSLF 255 (259)
Q Consensus 227 V~~~~-~--~~y~gs~t~p~c~--~~~~~~~~~~ 255 (259)
++... . ++|.||+|||||+ +.|+|+.-.+
T Consensus 157 llp~~~~~y~~Y~GSLTTPpC~E~V~W~V~~~pi 190 (227)
T cd00326 157 LLPSSLRDYYTYEGSLTTPPCSEGVTWIVFKEPI 190 (227)
T ss_pred HCCCCcCCEEEEeccCcCCCCccceEEEEeCCce
Confidence 44333 2 8999999999999 8888765433
No 16
>PLN02202 carbonate dehydratase
Probab=100.00 E-value=5.7e-41 Score=306.85 Aligned_cols=125 Identities=28% Similarity=0.405 Sum_probs=104.2
Q ss_pred CceeecccCCCCCCCcccc---ccCCC-CCCCCcceecCCcee-ccCCCCceEeCcCCCCceEEEEecCeEEEEeeCC-C
Q psy6463 50 SKFLQSSILHVRPERWSED---FHQCT-GKYQSPIDIEETLVA-RVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTF-K 123 (259)
Q Consensus 50 ~~w~Y~~~g~~GP~~W~~~---~~~C~-G~~QSPInI~~~~~~-~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~-~ 123 (259)
..|+| ++..||++|++. |..|. |++||||||.+..+. +..+.+|.+.++ ....++.|+|||+++.+.+ +
T Consensus 29 ~~w~Y--~~~~GP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~---~~~~~l~N~Ghtv~v~~~~~~ 103 (284)
T PLN02202 29 VVFGY--KGKNGPNQWGHLNPHFTKCAVGKLQSPIDIQRRQIFYNHKLESIHRDYY---FTNATLVNHVCNVAMFFGEGA 103 (284)
T ss_pred CCcCC--CCCCChhhhhhcCcchhhccCCCccCCEeecCCccccCCCCCceeeecc---CCceEEEECCccEEEEEcCCC
Confidence 36888 577899999985 45794 999999999988765 778889998643 2457899999999999863 3
Q ss_pred CCcEEEcCCCCceEEeeEEEeecCCCCCCCCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEecc
Q psy6463 124 EEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAE 200 (259)
Q Consensus 124 ~~~~i~GG~L~~~Y~l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~ 200 (259)
+.+. .|| .+|+|.|||||||| ||+|||++|||||||||++.+ +++|||||||++|+
T Consensus 104 ~~~~-~~g---~~Y~L~QfHFH~gS------EH~idG~~yp~E~H~VH~~~~-----------g~laVlgv~~~~g~ 159 (284)
T PLN02202 104 GDVI-IDN---KNYTLLQMHWHTPS------EHHLHGVQYAAELHMVHQAKD-----------GSFAVVASLFKIGT 159 (284)
T ss_pred CeeE-ECC---cEEEEEEEEecCCc------ccEECCeeCCeEEEEEEEcCC-----------CCEEEEEEEEeccC
Confidence 3343 344 69999999999987 999999999999999999863 78999999999986
No 17
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-40 Score=287.51 Aligned_cols=154 Identities=36% Similarity=0.548 Sum_probs=130.3
Q ss_pred CCceeecccCCCCCCCcccc---ccCC-CCCCCCcceecCCceeccCCCCceEeCcCCCCceEEEEecCeEEEEeeCCC-
Q psy6463 49 ESKFLQSSILHVRPERWSED---FHQC-TGKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTFK- 123 (259)
Q Consensus 49 ~~~w~Y~~~g~~GP~~W~~~---~~~C-~G~~QSPInI~~~~~~~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~~- 123 (259)
+..|.| .|..||++|++. |..| .|++||||||...... ...++|.+.|+ +...+|.|||||||+.+.++
T Consensus 25 ~~~WgY--~g~~GPEhWg~L~~df~~C~~Gk~QSPIdI~~~~~~-~~~~~l~~~Y~---~s~~~i~nnghTiqv~~~~~~ 98 (250)
T COG3338 25 EVHWGY--TGKEGPEHWGELSPDFEACAEGKNQSPIDIEHAVDV-QDKPPLQLNYQ---PSAVTIKNNGHTIQVNFEPGS 98 (250)
T ss_pred cccccc--cCCcCchhhhhcCchhhHhhccccCCCccHHHheec-ccccchheeec---cCceEEEecCcEEEEeccCCC
Confidence 347887 788899999985 4489 6999999999765432 26778888643 47899999999999999854
Q ss_pred CCcEEEcCCCCceEEeeEEEeecCCCCCCCCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEecc---
Q psy6463 124 EEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAE--- 200 (259)
Q Consensus 124 ~~~~i~GG~L~~~Y~l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~--- 200 (259)
+.+.+.| ..|.|.|||||.|| ||.|||+.||||.||||.+.+ +.|||+|+|++.|.
T Consensus 99 n~l~~~g----k~y~L~qfHFH~Ps------Ehlv~Gk~~pmEaHFVHkd~~-----------g~L~Vl~v~~~~g~eN~ 157 (250)
T COG3338 99 NHLRYDG----KTYQLVQFHFHAPS------EHLVDGKSFPMEAHFVHKDAK-----------GTLAVLAVLLQAGAENP 157 (250)
T ss_pred cceeecC----cEEEEEEEEecCch------HHhhccccccceeeeeecCCC-----------CCEEEEEEeeecCCCCc
Confidence 5666665 89999999999999 999999999999999999884 88999999999987
Q ss_pred ----------------------------ccc-------------------------------hHHHH---hhhccCCCCC
Q psy6463 201 ----------------------------FRH-------------------------------LHKKA---NKYLTHNSRP 218 (259)
Q Consensus 201 ----------------------------L~~-------------------------------S~~Ql---~~~l~~N~Rp 218 (259)
||. |++|+ .+.|.+|.||
T Consensus 158 ~l~~l~~~fP~~~ge~~~l~~~id~~~~lP~s~~yyty~GSLTTPPCsEgV~W~Vl~ep~evs~~qi~~f~~~~~~N~RP 237 (250)
T COG3338 158 ELAPLWEGFPQKPGEEETLDETIDLNAFLPESRNYYTYNGSLTTPPCSEGVTWIVLKEPIEVSQEQIAEFSKLMGHNARP 237 (250)
T ss_pred chhHHHHhcccccccccceeeccChhHhCccccceEEecccccCCCcccCceEEEEcCcccCCHHHHHHHHHHhCCCCCC
Confidence 111 89998 6789999999
Q ss_pred CcCCCCCcEEE
Q psy6463 219 VQPLSGRPIWY 229 (259)
Q Consensus 219 ~QpLn~R~V~~ 229 (259)
+||+|+|.|+.
T Consensus 238 VQp~N~R~I~~ 248 (250)
T COG3338 238 VQPLNDRLILE 248 (250)
T ss_pred CcCCCCcEEEe
Confidence 99999999875
No 18
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=100.00 E-value=2.1e-39 Score=285.84 Aligned_cols=169 Identities=32% Similarity=0.427 Sum_probs=125.8
Q ss_pred CCCCcccc---ccCCC-CCCCCcceecCCceeccCCCCceEeCcCCCCceEEEEecCeEEEEeeCC-CCCcEEEcCCCCc
Q psy6463 61 RPERWSED---FHQCT-GKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTF-KEEPYIIGGPLGF 135 (259)
Q Consensus 61 GP~~W~~~---~~~C~-G~~QSPInI~~~~~~~~~l~~L~~~~y~~~~~~~~i~N~Ghtv~v~~~~-~~~~~i~GG~L~~ 135 (259)
||++|+.. |+.|+ |++||||||.+..+....+++|.+.++ +..+++.|+|||+++.+.+ .+.+.+.| .
T Consensus 1 gp~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~~~~l~~~~~---~~~~~l~N~G~tv~~~~~~~~~~~~~~g----~ 73 (216)
T cd03124 1 GPEHWGNLDPEFALCATGKNQSPIDITTKAVVSDKLPPLNYNYK---PTSATLVNNGHTIQVNFEGNGGTLTIDG----E 73 (216)
T ss_pred CCcchhhCCcchhhhcCCCCCCCEeeccCceeecCCCCceeecc---CCceEEEECCceEEEEEcCCCCeEEECC----c
Confidence 79999874 78996 999999999997666223889999643 2578999999999999973 35566655 7
Q ss_pred eEEeeEEEeecCCCCCCCCccccCCccCcceeeeeeeecCCCChhhhhcCCCCeEEEEEEEEeccccchHHHHhh---hc
Q psy6463 136 KYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAEFRHLHKKANK---YL 212 (259)
Q Consensus 136 ~Y~l~q~HFHwgs~~~~GSEHtIdG~~~p~ElH~VH~n~~y~s~~eA~~~~~glaVlavf~~~g~L~~S~~Ql~~---~l 212 (259)
+|+|.|||||||| ||+|||++|||||||||++. ++++|||||||++++-....+++-+ ..
T Consensus 74 ~Y~l~q~HfH~gS------EH~idg~~y~~ElH~Vh~~~-----------~~~laVl~v~~~~~~~n~~l~~i~~~l~~~ 136 (216)
T cd03124 74 TYQLLQFHFHSPS------EHLINGKRYPLEAHLVHKSK-----------DGQLAVVAVLFEEGKENPFLKKILDNMPKK 136 (216)
T ss_pred EEEEEEEEecCCc------ccEeccccCCceeeEEEEcC-----------CCCEEEEEEEEeecCCCHHHHHHHHhhhhh
Confidence 9999999999977 99999999999999999987 4899999999999851111122211 11
Q ss_pred cCCCCCCcCC-CCCcEEEcc--cccccccCCCCCch--HHHHHHHH
Q psy6463 213 THNSRPVQPL-SGRPIWYNA--ADEFSESSTLRPTL--FGITMLLS 253 (259)
Q Consensus 213 ~~N~Rp~QpL-n~R~V~~~~--~~~y~gs~t~p~c~--~~~~~~~~ 253 (259)
..+...+.++ +-+.++.+. -++|.||+|||||+ +.|+++.-
T Consensus 137 ~~~~~~~~~~~~~~~llp~~~~y~~Y~GSLTtPpC~E~V~W~V~~~ 182 (216)
T cd03124 137 EGTEVNLPAILDPNELLPESRSYYRYEGSLTTPPCSEGVRWIVLKQ 182 (216)
T ss_pred cCCceeccCCCCHHHhcccCCceEEEeeecCCCCCcCceEEEecCC
Confidence 1222233333 333333222 27999999999999 88887754
No 19
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=96.21 E-value=0.0029 Score=55.89 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.7
Q ss_pred hHHHH---hhh-ccCCCCCCcCCCCCcEE
Q psy6463 204 LHKKA---NKY-LTHNSRPVQPLSGRPIW 228 (259)
Q Consensus 204 S~~Ql---~~~-l~~N~Rp~QpLn~R~V~ 228 (259)
|.+|| .+. +.+|+||+||||||.|+
T Consensus 187 s~~Ql~~f~~~~~~~N~Rp~Q~ln~R~v~ 215 (216)
T cd03124 187 SKEQLAKFRAAVYPNNARPVQPLNGREVL 215 (216)
T ss_pred CHHHHHHHHHhccCCCCCCCCCCCCceee
Confidence 89999 334 78999999999999986
No 20
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=95.92 E-value=0.0043 Score=56.22 Aligned_cols=17 Identities=47% Similarity=0.919 Sum_probs=15.4
Q ss_pred ccCCCCCCcCCCCCcEE
Q psy6463 212 LTHNSRPVQPLSGRPIW 228 (259)
Q Consensus 212 l~~N~Rp~QpLn~R~V~ 228 (259)
|.+|+||+||||+|.|+
T Consensus 236 ~~~N~Rp~Qpln~R~V~ 252 (253)
T cd03122 236 LPNNGRPQQPLGSRTVF 252 (253)
T ss_pred ccCCCcCCCCCCCCEec
Confidence 46999999999999985
No 21
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=95.68 E-value=0.0013 Score=59.10 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=18.2
Q ss_pred ccccccCCCCCch--HHHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLLS 253 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~~ 253 (259)
++|.||||||||+ +.|+|+.-
T Consensus 168 y~Y~GSLTTPpC~E~V~W~V~~~ 190 (236)
T cd03149 168 WTYPGSLTTPPLNESVTWIVLKE 190 (236)
T ss_pred EEecccCcCCCCCCceEEEEeCc
Confidence 6899999999999 89987643
No 22
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=95.45 E-value=0.0017 Score=58.29 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=17.7
Q ss_pred ccccccCCCCCch--HHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLL 252 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~ 252 (259)
++|.||||||||+ +.|+|+.
T Consensus 168 y~Y~GSLTTPPC~E~V~W~V~~ 189 (236)
T cd03118 168 WTYPGSLTTPPLTESVTWIIQK 189 (236)
T ss_pred EEecCcccCCCCcCceEEEEeC
Confidence 6999999999999 8888764
No 23
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.0019 Score=57.68 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=18.1
Q ss_pred ccccccCCCCCch--HHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLL 252 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~ 252 (259)
++|.||+|||||+ +.|+||.
T Consensus 193 yty~GSLTTPPCsEgV~W~Vl~ 214 (250)
T COG3338 193 YTYNGSLTTPPCSEGVTWIVLK 214 (250)
T ss_pred EEecccccCCCcccCceEEEEc
Confidence 8999999999999 9998764
No 24
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=95.28 E-value=0.002 Score=58.47 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=17.7
Q ss_pred ccccccCCCCCch--HHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLL 252 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~ 252 (259)
++|.||||||||+ +.|+|+.
T Consensus 183 y~Y~GSLTTPPC~E~V~W~V~~ 204 (256)
T cd03120 183 WVYEGSLTTPPCSEGVTWILFR 204 (256)
T ss_pred EEEeeecCCCCCCCCeEEEEeC
Confidence 6999999999999 8888764
No 25
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=95.26 E-value=0.0022 Score=58.33 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=18.3
Q ss_pred ccccccCCCCCch--HHHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLLS 253 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~~ 253 (259)
++|.||||||||+ +.|+|+.-
T Consensus 191 y~Y~GSLTTPpC~E~V~W~V~~~ 213 (259)
T cd03119 191 WTYPGSLTTPPLLECVTWIVLKE 213 (259)
T ss_pred EEeccccCCCCCCCceEEEEeCC
Confidence 6999999999999 88887643
No 26
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=95.24 E-value=0.0023 Score=58.13 Aligned_cols=21 Identities=14% Similarity=-0.054 Sum_probs=18.2
Q ss_pred ccccccCCCCCch--HHHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLLS 253 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~~ 253 (259)
++|.||||||||+ +.|+|+.-
T Consensus 187 y~Y~GSLTTPPC~E~V~W~V~~~ 209 (256)
T cd03121 187 ITYEGSLTSPGCHETVTWIILNK 209 (256)
T ss_pred EEeeccccCCCCCcceEEEEeCc
Confidence 6999999999999 88887643
No 27
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=95.18 E-value=0.0023 Score=57.84 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=17.6
Q ss_pred ccccccCCCCCch--HHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLL 252 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~ 252 (259)
++|.||||||||+ +.|+|+.
T Consensus 181 y~Y~GSLTTPpC~E~V~W~V~~ 202 (249)
T cd03126 181 YRYEGSLTTPPCYPSVLWTVFR 202 (249)
T ss_pred EEEeccCcCCCCcCceEEEEeC
Confidence 6999999999999 8888764
No 28
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=95.12 E-value=0.012 Score=52.25 Aligned_cols=25 Identities=40% Similarity=0.735 Sum_probs=21.0
Q ss_pred hHHHH---hhh-------ccCCCCCCcCCCCCcEE
Q psy6463 204 LHKKA---NKY-------LTHNSRPVQPLSGRPIW 228 (259)
Q Consensus 204 S~~Ql---~~~-------l~~N~Rp~QpLn~R~V~ 228 (259)
|++|| .+. +.+|+||+||||+|.|+
T Consensus 193 s~~Ql~~f~~l~~~~~~~~~~N~Rp~Q~ln~R~v~ 227 (227)
T cd00326 193 SKEQLEAFRSLLDREGKPLVNNYRPVQPLNGRVVY 227 (227)
T ss_pred CHHHHHHHHHHHhcCCCcccCCCCCCCCCCCCeeC
Confidence 89998 222 78999999999999884
No 29
>PLN02202 carbonate dehydratase
Probab=95.04 E-value=0.0027 Score=58.61 Aligned_cols=21 Identities=24% Similarity=0.116 Sum_probs=18.0
Q ss_pred ccccccCCCCCch--HHHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLLS 253 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~~ 253 (259)
++|.||||||||+ +.|+|+--
T Consensus 205 y~Y~GSLTTPPC~E~V~W~V~~~ 227 (284)
T PLN02202 205 FRYIGSLTTPPCSENVSWTILGK 227 (284)
T ss_pred EEEeccccCCCCCCceEEEEeCc
Confidence 6999999999999 88887643
No 30
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=95.01 E-value=0.0026 Score=57.50 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=18.2
Q ss_pred ccccccCCCCCch--HHHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLLS 253 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~~ 253 (259)
++|.||||||||+ +.|+|+.-
T Consensus 181 y~Y~GSLTTPPC~E~V~W~V~~~ 203 (247)
T cd03150 181 FRYEGSLTTPPCAQGVIWTVFNQ 203 (247)
T ss_pred EEEeeeccCCCCCCceEEEEeCc
Confidence 6899999999999 88887643
No 31
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=94.99 E-value=0.0028 Score=57.24 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=18.0
Q ss_pred ccccccCCCCCch--HHHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLLS 253 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~~ 253 (259)
++|.||||||||+ +.|+|+.-
T Consensus 183 y~Y~GSLTTPPC~E~V~W~V~~~ 205 (248)
T cd03123 183 YRYEGSLTTPPCYESVLWTVFRD 205 (248)
T ss_pred EEEeccCcCCCCcCcEEEEEeCC
Confidence 6999999999999 88887643
No 32
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=94.95 E-value=0.0029 Score=57.21 Aligned_cols=20 Identities=15% Similarity=-0.012 Sum_probs=17.6
Q ss_pred ccccccCCCCCch--HHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLL 252 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~ 252 (259)
++|.||||||||+ +.|+|+.
T Consensus 183 y~Y~GSLTTPpC~E~V~W~V~~ 204 (249)
T cd03125 183 YTYQGSLTTPPCTENVLWFVFD 204 (249)
T ss_pred EEEeccCcCCCCCCceEEEEeC
Confidence 6899999999999 8887764
No 33
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=94.87 E-value=0.0026 Score=57.01 Aligned_cols=21 Identities=14% Similarity=-0.070 Sum_probs=18.1
Q ss_pred ccccccCCCCCch--HHHHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITMLLS 253 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~~~ 253 (259)
++|.||||||||+ +.|+++.-
T Consensus 169 y~Y~GSLTTPPC~E~V~W~V~~~ 191 (234)
T cd03117 169 YRYNGSLTTPGCNEAVIWTVFEE 191 (234)
T ss_pred EEEeccccCCCCcccEEEEEeCC
Confidence 6999999999999 88887644
No 34
>KOG0382|consensus
Probab=94.57 E-value=0.0045 Score=56.63 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=24.8
Q ss_pred CcCCCCCcEEEc-c--cccccccCCCCCch--HHHHHHHHh
Q psy6463 219 VQPLSGRPIWYN-A--ADEFSESSTLRPTL--FGITMLLSL 254 (259)
Q Consensus 219 ~QpLn~R~V~~~-~--~~~y~gs~t~p~c~--~~~~~~~~~ 254 (259)
+++++-|.++.. . -++|.||||||||+ +.|+++.-.
T Consensus 179 l~~f~~~~llp~~~~~y~tY~GSLTTPPC~E~VtW~V~~~p 219 (262)
T KOG0382|consen 179 LPGFDPSELLPKSTRDYYTYEGSLTTPPCSESVTWTVFREP 219 (262)
T ss_pred cCCCCHHHhcCccCCceEEEEeeccCCCCCCCEEEEEcCce
Confidence 344444444444 2 17999999999999 888877543
No 35
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=93.99 E-value=0.0041 Score=56.18 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=16.0
Q ss_pred ccccccCCCCCch--HHHHHH
Q psy6463 233 DEFSESSTLRPTL--FGITML 251 (259)
Q Consensus 233 ~~y~gs~t~p~c~--~~~~~~ 251 (259)
++|.||||||||+ +.|+|+
T Consensus 188 y~Y~GSLTtPpCtE~V~W~V~ 208 (256)
T PF00194_consen 188 YRYNGSLTTPPCTEGVTWIVF 208 (256)
T ss_dssp EEEEEE-SSTTSSSEEEEEEE
T ss_pred EEEcccccCCCcceeEEEEEe
Confidence 7999999999999 888765
No 36
>PF05906 DUF865: Herpesvirus-7 repeat of unknown function (DUF865)
Probab=32.51 E-value=41 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=17.2
Q ss_pred CCCCCCCCCccCCCCCCceEEE
Q psy6463 16 NLPHNHHDFGYDPDEPDELVVS 37 (259)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~ 37 (259)
.-||||+-+.|.|-.-.|--|.
T Consensus 9 erpqphnpltfkpvkttgtavv 30 (35)
T PF05906_consen 9 ERPQPHNPLTFKPVKTTGTAVV 30 (35)
T ss_pred cCCCCCCccceeeeeccceEEE
Confidence 4699999999999877765443
No 37
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=28.80 E-value=15 Score=26.69 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=13.2
Q ss_pred ccccCCccCcceeeeee
Q psy6463 155 EDLINNRSYPMELHMVF 171 (259)
Q Consensus 155 EHtIdG~~~p~ElH~VH 171 (259)
||+|||+.|-.+--|.-
T Consensus 9 ~h~IdGk~y~v~kDlYd 25 (65)
T PF09211_consen 9 EHTIDGKKYYVKKDLYD 25 (65)
T ss_dssp EEEETTEEEEESS-EEE
T ss_pred cEEECCEEEEecCChhh
Confidence 99999999988755543
Done!