RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6463
(259 letters)
>3fe4_A Carbonic anhydrase 6; secretion, metal binding, structural GEN
structural genomics consortium, SGC, glycoprotein,
lyase, M binding, secreted; 1.90A {Homo sapiens}
Length = 278
Score = 169 bits (429), Expect = 8e-52
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTSTVITNNGHTVMLNP 120
W + + C G+ QSPI+++ T V SL L G++ + + NNGHTV ++
Sbjct: 13 EAHWPQHYPACGGQRQSPINLQRTKVRYNPSLKGLNMTGYETQAGEFPMVNNGHTVQISL 72
Query: 121 TFKEEPYIIGGPLGFKYVFSQLHFHWGV--NDSVGSEDLINNRSYPMELHMVFYNKDYDS 178
+ G + Y+ Q+HFHWG ++ GSE ++ + +E+H+V YN Y S
Sbjct: 73 PSTMRMTVADGTV---YIAQQMHFHWGGASSEISGSEHTVDGIRHVIEIHIVHYNSKYKS 129
Query: 179 SDRAQGYKDGLVVLASFFELAE 200
D AQ DGL VLA+F E+
Sbjct: 130 YDIAQDAPDGLAVLAAFVEVKN 151
Score = 43.6 bits (103), Expect = 2e-05
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 194 SFFELAEFRH-LHKKANKYLTHNSRPVQPLSGRPIWYN 230
S ++ + + L NK + ++ R QPL+ R + N
Sbjct: 221 SRTQVWKLENSLLDHRNKTIHNDYRRTQPLNHRVVESN 258
>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
projection, disulfide bond, glycoprotein, lyase,
membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
{Homo sapiens}
Length = 257
Score = 167 bits (426), Expect = 2e-51
Identities = 47/139 (33%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTSTV-ITNNGHTVMLN 119
W C G++QSP+DI L A +L L+ GF P + + NNGH+V L
Sbjct: 12 DPPWPRVSPACAGRFQSPVDIRPQLAAFSPALRPLELLGFQLPPLPELRLRNNGHSVQLT 71
Query: 120 PTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSS 179
+ GP +Y QLH HWG GSE + +P E+H+V + +
Sbjct: 72 --LPPGLEMALGPGR-EYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLSTAFARV 128
Query: 180 DRAQGYKDGLVVLASFFEL 198
D A G GL VLA+F E
Sbjct: 129 DEALGRPGGLAVLAAFLEE 147
Score = 42.0 bits (99), Expect = 8e-05
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 194 SFFELAEFRH-LHKKANKYLTHNSRPVQPLSGRPIWYN 230
S +L L + L N R QPL+GR I +
Sbjct: 218 SAKQLHTLSDTLWGPGDSRLQLNFRATQPLNGRVIEAS 255
>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
mutation, lyase, metal-binding, lyase-lyase inhibitor
compl; HET: HGB SUA; 0.90A {Homo sapiens} PDB: 1ca3_A*
1cnw_A* 1cny_A* 1eou_A* 1g6v_A 1hca_A 1kwq_A* 1kwr_A*
1t9n_A 1tb0_X 1tbt_X 1te3_X 1teq_X 1teu_X 1cnx_A 1xev_A
1xeg_A 2ax2_A* 2eu3_A* 2ez7_A* ...
Length = 260
Score = 160 bits (406), Expect = 2e-48
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVMLN-P 120
PE W +DF G+ QSP+DI+ + +DQ TS I NNGH +
Sbjct: 13 PEHWHKDFPIAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQ-ATSLRILNNGHAFNVEFD 71
Query: 121 TFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSD 180
+++ + GGPL Y Q HFHWG D GSE ++ + Y ELH+V +N Y
Sbjct: 72 DSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWNTKYGDFG 131
Query: 181 RAQGYKDGLVVLASFFELAE 200
+A DGL VL F ++
Sbjct: 132 KAVQQPDGLAVLGIFLKVGS 151
Score = 40.9 bits (96), Expect = 2e-04
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 194 SFFELAEFRHLH----KKANKYLTHNSRPVQPLSGRPIWYN 230
S ++ +FR L+ + + + N RP QPL R I +
Sbjct: 218 SSEQVLKFRKLNFNGEGEPEELMVDNWRPAQPLKNRQIKAS 258
>2w2j_A Carbonic anhydrase-related protein; lyase, metal-binding; 1.60A
{Homo sapiens}
Length = 291
Score = 159 bits (404), Expect = 6e-48
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTSTVITNNGHTVMLNP 120
W F G+YQSPI++ SL +++ +TN+GHT+ +
Sbjct: 35 GVEWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVI- 93
Query: 121 TFKEEPYIIGGPL--GFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKD-YD 177
K + + GGPL G ++ ++ FHWG + GSE +N +++PMELH++ +N +
Sbjct: 94 -LKSKSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFG 152
Query: 178 SSDRAQGYKDGLVVLASFFELAE 200
S D A G G+ ++A F ++ +
Sbjct: 153 SIDEAVGKPHGIAIIALFVQIGK 175
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 194 SFFELAEFRHLH---------KKANKYLTHNSRPVQPLSGRPIWYN 230
S ++ EFR L + + L N RP QPLS R I
Sbjct: 244 SQLQIEEFRRLRTHVKGAELVEGCDGILGDNFRPTQPLSDRVIRAA 289
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 158 bits (402), Expect = 7e-48
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTS-TVITNNGHTVMLN 119
PE W C G +QSPIDI + EL+ GFD E ++ T + N G TV +
Sbjct: 17 PEHWVTSSVSCGGSHQSPIDILDHHARVGDEYQELQLDGFDNESSNKTWMKNTGKTVAIL 76
Query: 120 PTFKEEPYIIGGPLGFKYVFSQLHFHWG-VNDSVGSEDLINNRSYPMELHMVFYNKD-YD 177
K++ ++ G L ++ ++ FHWG N S GSE +N R +P+E+ + FYN D +D
Sbjct: 77 --LKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSVNGRRFPVEMQIFFYNPDDFD 134
Query: 178 SSDRAQGYKDGLVVLASFFELAE 200
S A + +A FF+++
Sbjct: 135 SFQTAISENRIIGAMAIFFQVSP 157
Score = 40.2 bits (94), Expect = 3e-04
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 194 SFFELAEFRHL-------HKKANKYLTHNSRPVQPLSGRPIWYN 230
S+ +L F + H K+ +YL +N RP Q L+ R + +
Sbjct: 226 SYHQLEAFYSIFTTEQQDHVKSVEYLRNNFRPQQALNDRVVSKS 269
>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer,
lyase; 1.70A {Homo sapiens} PDB: 3uyq_A 2hfw_A 1z93_A
2hfy_A 3uyn_A 1z97_A 1flj_A*
Length = 260
Score = 158 bits (401), Expect = 8e-48
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVMLN-P 120
P+ W E F G+ QSPI++ + + +D ++ I NNGHT +
Sbjct: 13 PDHWHELFPNAKGENQSPIELHTKDIRHDPSLQPWSVSYDG-GSAKTILNNGHTCRVVFD 71
Query: 121 TFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSD 180
+ + GGPL Y Q H HWG +D GSE ++ Y ELH+V +N Y++
Sbjct: 72 DTYDRSMLRGGPLPGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNPKYNTFK 131
Query: 181 RAQGYKDGLVVLASFFELAE 200
A +DG+ V+ F ++
Sbjct: 132 EALKQRDGIAVIGIFLKIGH 151
Score = 40.5 bits (95), Expect = 2e-04
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 190 VVLASFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
+ S ++A+ R L + L N RP QP++ R + +
Sbjct: 214 PMTVSSDQMAKLRSLLSSAENEPPVPLVSNWRPPQPINNRVVRAS 258
>2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus
musculus} SCOP: b.74.1.1 PDB: 3znc_A*
Length = 258
Score = 157 bits (400), Expect = 1e-47
Identities = 45/140 (32%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTSTVITNNGHTVMLNP 120
PE+W C QSPI+I L G+DQ I NN HTV +
Sbjct: 17 PEKWPG---ACKENQQSPINIVTARTKVNPRLTPFILVGYDQ-KQQWPIKNNQHTVEMT- 71
Query: 121 TFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSD 180
IIGG L +Y QLH HW + GSE I+ R + ME+H+V
Sbjct: 72 -LGGGACIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVHKKLTSS--- 127
Query: 181 RAQGYKDGLVVLASFFELAE 200
+ KD VLA E+ +
Sbjct: 128 -KEDSKDKFAVLAFMIEVGD 146
Score = 39.3 bits (92), Expect = 5e-04
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 194 SFFELAEFRHL---HKKANKYLTHNSRPVQPLSGRPIWYNAA 232
+ EF + + N RP+QPL R ++ + A
Sbjct: 217 HKNQFLEFSKNLYYDEDQKLNMKDNVRPLQPLGKRQVFKSHA 258
>3fw3_A Carbonic anhydrase 4; structure-based drug design. small molecule
complex. CO-CRYS membrane, disease mutation,
glycoprotein, GPI-anchor; HET: ETS GLC; 1.72A {Homo
sapiens} PDB: 1znc_A* 3f7b_A* 3f7u_A*
Length = 266
Score = 157 bits (398), Expect = 2e-47
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 11/145 (7%)
Query: 62 PERWSEDFHQ-----CTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTSTVITNNGHT 115
+ C QSPI+I T L F G+D+ + + NNGH+
Sbjct: 13 SSNYPCLVPVKWGGNCQKDRQSPINIVTTKAKVDKKLGRFFFSGYDK-KQTWTVQNNGHS 71
Query: 116 VMLNPTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKD 175
VM+ + + I GG L Y QLH HW GSE ++ + ME+H+V +
Sbjct: 72 VMML--LENKASISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKEK 129
Query: 176 --YDSSDRAQGYKDGLVVLASFFEL 198
+ AQ +D + VLA E
Sbjct: 130 GTSRNVKEAQDPEDEIAVLAFLVEA 154
Score = 39.7 bits (93), Expect = 5e-04
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 190 VVLASFFELAEFRHL---HKKANKYLTHNSRPVQPLSGRPIWYN 230
+ ++ F K+ + N RP+Q L R + +
Sbjct: 223 PIQLHREQILAFSQKLYYDKEQTVSMKDNVRPLQQLGQRTVIKS 266
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 157 bits (399), Expect = 2e-47
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTS-TVITNNGHTVMLN 119
+ W + + C QSPI+I+E L +L +LKF G+D+ T I N G TV +N
Sbjct: 16 QKNWGKKYPTCNSPKQSPINIDEDLTQVNVNLKKLKFQGWDKTSLENTFIHNTGKTVEIN 75
Query: 120 PTFKEEPYIIGGPLGFKYVFSQLHFHWGVND--SVGSEDLINNRSYPMELHMVFYNKD-Y 176
+ + GG + S++ FHWG + S GSE + + +P+E+ + ++ D +
Sbjct: 76 --LTNDYRVSGGVSEMVFKASKITFHWGKCNMSSDGSEHSLEGQKFPLEMQIYCFDADRF 133
Query: 177 DSSDRAQGYKDGLVVLASFFEL 198
S + A K L L+ FE+
Sbjct: 134 SSFEEAVKGKGKLRALSILFEV 155
Score = 40.9 bits (96), Expect = 2e-04
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 190 VVLASFFELAEFRHL-------HKKANKYLTHNSRPVQPLSGRPIWYN 230
V S +LA F + + YL +N R Q R ++ +
Sbjct: 222 TVSISESQLAVFCEVLTMQQSGYVMLMDYLQNNFREQQYKFSRQVFSS 269
>1rj5_A Carbonic anhydrase XIV; beta-sheet, alpha-helix, zinc enzyme,
lyase; HET: NAG BMA; 2.81A {Mus musculus} SCOP: b.74.1.1
PDB: 1rj6_A*
Length = 261
Score = 156 bits (395), Expect = 6e-47
Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTSTV-ITNNGHTVMLN 119
+ W + +C G QSPI+I+ V LP ++ G+DQ T + + NNGHTV L+
Sbjct: 13 QDHWPTSYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLDLHNNGHTVQLS 72
Query: 120 PTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSV-GSEDLINNRSYPMELHMVFYNKD-YD 177
P + G L KY +QLH HWG S+ GSE IN+ + ELH+V Y+ Y
Sbjct: 73 L----PPTLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVVHYDSQSYS 128
Query: 178 SSDRAQGYKDGLVVLASFFELAEFRH 203
S A GL VL E+ E +
Sbjct: 129 SLSEAAQKPQGLAVLGILIEVGETEN 154
Score = 42.4 bits (100), Expect = 6e-05
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 194 SFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
S +L + + + ++ L N R QPL+ R I+ +
Sbjct: 220 SMGQLEKLQETLSSTEEDPSEPLVQNYRVPQPLNQRTIFAS 260
>1jd0_A Carbonic anhydrase XII; extracellular domain, bitopic protein, type
I membrane protein, lyase; HET: AZM; 1.50A {Homo
sapiens} SCOP: b.74.1.1 PDB: 1jcz_A*
Length = 263
Score = 154 bits (390), Expect = 4e-46
Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTSTV-ITNNGHTVMLN 119
WS+ + C G QSPID+ ++ SL L+F G++ +TNNGH+V LN
Sbjct: 12 ENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLN 71
Query: 120 PTFKEEPYIIGGPLGFKYVFSQLHFHWG-VNDSVGSEDLINNRSYPMELHMVFYNKD-YD 177
+ L +Y +QLH HWG ND GSE ++ + + ELH+V YN D Y
Sbjct: 72 L----PSDMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYP 127
Query: 178 SSDRAQGYKDGLVVLASFFELAE 200
+ A +GL VLA E+
Sbjct: 128 DASTASNKSEGLAVLAVLIEMGS 150
Score = 40.9 bits (96), Expect = 2e-04
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 192 LASFFELAEFRHLHKKANKYLTHNSRPVQPLSGRPIWYN 230
L + H+ + + + +N R VQ R ++ +
Sbjct: 222 LLALETALYCTHMDDPSPREMINNFRQVQKFDERLVYTS 260
>3d0n_A Carbonic anhydrase 13; lyase, metal-binding, metal binding PROT;
HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A* 3da2_A*
Length = 264
Score = 152 bits (385), Expect = 2e-45
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARVSLPELKFFGFD-QEPTSTVITNNGHTVMLN- 119
P W E F G QSPI+I+ V L+ ++ +I+N+GH+ ++
Sbjct: 16 PIHWKEFFPIADGDQQSPIEIKTKEVKYD--SSLRPLSIKYDPSSAKIISNSGHSFNVDF 73
Query: 120 PTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKD-YDS 178
+ + + GGPL Y Q+H HWG D GSE +++ SY ELH+V +N D Y S
Sbjct: 74 DDTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNSDKYPS 133
Query: 179 SDRAQGYKDGLVVLASFFELAE 200
A DGL VL F ++ E
Sbjct: 134 FVEAAHEPDGLAVLGVFLQIGE 155
Score = 40.1 bits (94), Expect = 3e-04
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 194 SFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
S +LA+FR L +A +L N RP QPL GR + +
Sbjct: 222 SSQQLAKFRSLLCTAEGEAAAFLVSNHRPPQPLKGRKVRAS 262
>2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30;
1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A*
1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A*
2nn7_A* 3lxe_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A
Length = 260
Score = 151 bits (384), Expect = 3e-45
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVMLN-P 120
PE+WS+ + G QSP+DI+ + + + ++ T+ I N GH+ +N
Sbjct: 13 PEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNP-ATAKEIINVGHSFHVNFE 71
Query: 121 TFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKD-YDSS 179
+ GGP Y Q HFHWG + GSE ++ Y ELH+ +N Y S
Sbjct: 72 DNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSL 131
Query: 180 DRAQGYKDGLVVLASFFELAE 200
A DGL V+ ++ E
Sbjct: 132 AEAASKADGLAVIGVLMKVGE 152
Score = 39.4 bits (92), Expect = 6e-04
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 194 SFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
S +LA+FR L + HN+RP QPL GR + +
Sbjct: 219 SSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLKGRTVRAS 259
>3ml5_A Carbonic anhydrase 7; protein-inhibitor complex, lyase; HET: AZM;
2.05A {Homo sapiens} PDB: 3mdz_A*
Length = 269
Score = 151 bits (382), Expect = 8e-45
Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARVSLPELKFFGFD-QEPTSTVITNNGHTVMLN- 119
P W + + G QSPI+I + P L+ + S ITNNGH+V ++
Sbjct: 20 PSHWHKLYPIAQGDRQSPINIISSQAVYS--PSLQPLELSYEACMSLSITNNGHSVQVDF 77
Query: 120 PTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKD-YDS 178
+ + GGPL Y Q HFHWG VGSE ++ +S+P ELH+V +N Y +
Sbjct: 78 NDSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWNAKKYST 137
Query: 179 SDRAQGYKDGLVVLASFFELAE 200
A DGL V+ F E +
Sbjct: 138 FGEAASAPDGLAVVGVFLETGD 159
Score = 40.5 bits (95), Expect = 3e-04
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 194 SFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
S ++ +FR L ++ +N RP QPL GR + +
Sbjct: 226 SERQMGKFRSLLFTSEDDERIHMVNNFRPPQPLKGRVVKAS 266
>1keq_A F65A/Y131C-MI carbonic anhydrase V; proton transfer, engineered
residue, lyase; HET: 4MZ; 1.88A {Mus musculus} SCOP:
b.74.1.1 PDB: 1dmx_A 1dmy_A* 1urt_A
Length = 248
Score = 147 bits (373), Expect = 8e-44
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 73 TGKYQSPIDIEETLVARVSLPELKFFGFD-QEPTSTVITNNGHTVMLN-PTFKEEPYIIG 130
TG QSPI+I+ P+L + + N G+ + E+ I G
Sbjct: 3 TGTRQSPINIQWKDSVYD--PQLAPLRVSYDAASCRYLWNTGYAFQVEFDDSCEDSGISG 60
Query: 131 GPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKD-YDSSDRAQGYKDGL 189
GPLG Y Q HFHWG D GSE ++ +YP ELH+V +N Y++ +A ++GL
Sbjct: 61 GPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENCKKASVGENGL 120
Query: 190 VVLASFFELAE 200
V+ F +L
Sbjct: 121 AVIGVFLKLGA 131
Score = 40.9 bits (96), Expect = 2e-04
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 194 SFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
S +L+ FR L + + +N RP+QPL R + +
Sbjct: 198 SPSQLSMFRTLLFSGRGEEEDVMVNNYRPLQPLRDRKLRSS 238
>4e9o_X D8L antigen, IMV membrane protein; CAH alpha fold, VP7 motif, beta
sheet, cell surface chondroi binding, viral entry,
chondroitin sulfate; 1.42A {Vaccinia virus} PDB: 4etq_X
Length = 269
Score = 143 bits (361), Expect = 9e-42
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 74 GKYQSPIDIEETLVARV-SLPELKFFGFDQEPTSTVITNNGHTVMLNPTFKEEPYIIGGP 132
+ SPI+IE L L + +PT+ I N G V +N + YI GG
Sbjct: 2 PQQLSPINIETKKAISNARLKPLDIHYNESKPTT--IQNTGKLVRINF---KGGYISGGF 56
Query: 133 LGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKD-YDSSDRAQGYKDGLVV 191
L +YV S LH +WG D GS LI+ Y E+++V +NK Y S + A+ + DGL++
Sbjct: 57 LPNEYVLSSLHIYWGKEDDYGSNHLIDVYKYSGEINLVHWNKKKYSSYEEAKKHDDGLII 116
Query: 192 LASFFELAEFRH 203
++ F ++ + ++
Sbjct: 117 ISIFLQVLDHKN 128
Score = 39.0 bits (91), Expect = 7e-04
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 194 SFFELAEFRHL-----HKKANKYLTHNSRPVQPLSGRPIWYNAADEFSESST 240
+L++FR L H+ Y+T N R L+ Y + + ++T
Sbjct: 192 HSDQLSKFRTLLSLSNHEGKPHYITENYRNPYKLNDDTEVYYSGEIIRAATT 243
>1y7w_A Halotolerant alpha-type carbonic anhydrase (DCA I; haltolerant
protein, algal Ca anhydrase, salt tolerant protein, zinc
enzyme; 1.86A {Dunaliella salina}
Length = 291
Score = 138 bits (350), Expect = 7e-40
Identities = 36/152 (23%), Positives = 51/152 (33%), Gaps = 23/152 (15%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARVS------LPELKFFGFDQEPTS-TVITNNGH 114
E + + C+G QSPIDI + S L D +TN
Sbjct: 36 QEGGTTKYPACSGSNQSPIDINTNQLMEPSSRSGTSAVSLNGLNVDGAQADGITLTNAKV 95
Query: 115 TVM------LNPTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELH 168
+ + P I G +V Q HFH SE IN YP+ELH
Sbjct: 96 DLEQGMKVTFDQPAANLPTIEIGGTTKSFVPIQFHFHHF-----LSEHTINGIHYPLELH 150
Query: 169 MVFYNKDYDSSDRAQGYKDGLVVLASFFELAE 200
+V +D L V+ ++ +E
Sbjct: 151 IVMQEQDPADVA-----TAQLAVIGIMYKYSE 177
Score = 40.6 bits (95), Expect = 3e-04
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 190 VVLASFFELAEFRHL-HKKANKYLTHNSRPVQPLSGRPIWYN 230
+ ++ F + N+R +Q L R ++
Sbjct: 248 PREVTREQMKLFVDVTMGAHAGADVVNNRMIQDLGDREVYKY 289
>3b1b_A Carbonic anhydrase 1; N-glycosylation, zinc-finger, lyase; HET:
NAG; 1.88A {Chlamydomonas reinhardtii}
Length = 377
Score = 127 bits (319), Expect = 1e-34
Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 40/169 (23%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARVSLP--------ELKFFGFDQEPTSTVITNNG 113
+ + TG+ QSPI++ + V + + TS + NNG
Sbjct: 52 KDGAGNAWVCKTGRKQSPINVPQYQVLDGKGSKIANGLQTQWSYPDLMSNGTSVQVINNG 111
Query: 114 HTVMLNPTFKEEPYII----------------------GGPLGFKYVFSQLHFHWGVNDS 151
HT+ + T+ + V +Q HFH
Sbjct: 112 HTIQVQWTYNYAGHATIAIPAMHNQTNRIVDVLEMRPNDAADRVTAVPTQFHFHST---- 167
Query: 152 VGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAE 200
SE L+ + YP+ELH+V + + + V F+L
Sbjct: 168 --SEHLLAGKIYPLELHIVHQVTEKLEACKG----GCFSVTGILFQLDN 210
Score = 30.8 bits (69), Expect = 0.42
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 190 VVLASFFELAEFRHL-HKKANKYLTHNSRPVQPLSGRPIWYN 230
SF + +R K + R + +N
Sbjct: 276 PQRISFGQWNRYRLAVGLKECNSTETAADAGHHHHHRRLLHN 317
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 122 bits (307), Expect = 3e-34
Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 37/161 (22%)
Query: 62 PERW---SEDFHQC-TGKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVM 117
PE W SE+F C TGK QSP++I ET+ +L + +P+ + NNGHT+
Sbjct: 12 PESWGNLSEEFRLCSTGKNQSPVNITETVS-----GKLPAIKVNYKPSMVDVENNGHTIQ 66
Query: 118 LNPTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYD 177
+N + G Y Q HFH SE+ I R++PME H V +++
Sbjct: 67 VNYPEGGNTLTVNGR---TYTLKQFHFHVP------SENQIKGRTFPMEAHFVHLDENK- 116
Query: 178 SSDRAQGYKDGLVVLASFFELAE--------FRHLHKKANK 210
+VLA +E + + + A K
Sbjct: 117 ----------QPLVLAVLYEAGKTNGRLSSIWNVMPMTAGK 147
Score = 33.1 bits (76), Expect = 0.060
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 190 VVLASFFELAEFRHLHKKANKYLTHNSRPVQPLSGRPI 227
+ +F + N+RPVQPL+ R +
Sbjct: 190 YDHIDQAQAEKFTRA------VGSENNRPVQPLNARVV 221
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 120 bits (303), Expect = 2e-33
Identities = 37/160 (23%), Positives = 53/160 (33%), Gaps = 34/160 (21%)
Query: 62 PERW---SEDFHQC-TGKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVM 117
P W E C GK+QSPI I+ + + LK + + N G +
Sbjct: 19 PLNWYGLDEANEACAKGKHQSPIVIDSAAIDYAASGSLKLDL--PLADGSKLENLGFGLQ 76
Query: 118 LNPTFKEEPYIIGGPL---GFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNK 174
+ T G L Y +Q HFH SE +N +PME+H VF
Sbjct: 77 VTLT--------NGSLTANSKTYTLAQFHFHTP------SEHHVNEEHFPMEVHFVFQTA 122
Query: 175 DYDSSDRAQGYKDGLVVLASFFELAEFRHLHKKANKYLTH 214
V+ FF+L+E +
Sbjct: 123 AK-----------ETAVVGFFFQLSEVGDSVPLFDSVFAP 151
Score = 35.9 bits (83), Expect = 0.008
Identities = 5/45 (11%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 190 VVLASFFELAEFRHLHKKANKYLTHNSRPVQPLSGRPIWYNAADE 234
+ + + + + + +N+R Q G+ A +
Sbjct: 205 PLPLTVQGYNKVKKI-------IKYNARYTQNALGQDNLLEVAAQ 242
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 40/254 (15%), Positives = 72/254 (28%), Gaps = 65/254 (25%)
Query: 15 KNLPHNHHDFGYDPDEPDEL---VVSTVALDL-EVVGSESKFLQSSI---LHVRPERWSE 67
++ +HH PDE L + DL V + + S I + W
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 68 DFHQCTGKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTFKEEPY 127
H K + I+ SL L+ + + + F +
Sbjct: 347 WKHVNCDKLTTIIE--------SSLNVLEPAEYRKMFDRLSV------------FPPSAH 386
Query: 128 IIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSDRAQGYKD 187
I P + S + W ++N +LH S + K+
Sbjct: 387 I---PTI---LLSLI---WFDVIKSDVMVVVN------KLH--------KYSLVEKQPKE 423
Query: 188 GLVVLASFF-----ELAEFRHLHKKA-NKYLTHNSRPVQPLSGRPI---WYN------AA 232
+ + S + +L LH+ + Y + L + +Y+
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 233 DEFSESSTLRPTLF 246
E E TL +F
Sbjct: 484 IEHPERMTLFRMVF 497
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.16
Identities = 41/261 (15%), Positives = 70/261 (26%), Gaps = 82/261 (31%)
Query: 47 GS-ESKFLQSSILHVRPERWSEDFHQCTGKYQSPIDIEETLVARVSLPEL--KFFGF--- 100
GS E L + + E F++ P + + EL KF G+
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNK---ILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 101 -----DQEPTSTVI-------------TNNGHTVMLN-PTFKEEP----------Y---- 127
V+ N+ H + + Y
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 128 -IIGGPLGFKYVFSQLHFHWGVNDSVGSEDLI-------NNRSYPMELHMVFYNKDYDSS 179
+ P K S L F V + G+ L+ N Y EL ++ + Y
Sbjct: 131 IMAKRPFD-KKSNSAL-FR-AVGE--GNAQLVAIFGGQGNTDDYFEELRDLY--QTY--- 180
Query: 180 DRAQGYKDGLVVLASFFELAEFRHLHKKANKYLTHNSRPVQPLSGRPI--WYNAADEFSE 237
L+ ++ L+E A K T G I W +
Sbjct: 181 ---HVLVGDLIKFSA-ETLSELIRTTLDAEKVFTQ---------GLNILEWLENPSNTPD 227
Query: 238 SSTLRPTLFGITMLLSLFPIL 258
L +++ +S P++
Sbjct: 228 KDYL------LSIPIS-CPLI 241
Score = 28.5 bits (63), Expect = 3.2
Identities = 60/319 (18%), Positives = 97/319 (30%), Gaps = 98/319 (30%)
Query: 14 IKNLPHNHHDFGYDPDEPD---ELVV------------STVALDLEVVGS-----ESKFL 53
K LP F D DEP ELV S V +V+ E+ +L
Sbjct: 38 NKILPEPTEGFAAD-DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 54 QSSILHVRPERWSEDFHQCTGKYQSPIDIEETLVARVSLPELKFFGFDQEPTS----TVI 109
+ + +H + ++ K + I+ + AR+ FD++ S V
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKEL--IKNYITARIMAKR----PFDKKSNSALFRAVG 150
Query: 110 TNNGHTVML-------NPTFKE--EPYIIGGPLG---FKYVFSQL------------HFH 145
N V + + F+E + Y L K+ L F
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 146 WGVN--------DSVGSEDLINN--RSYPM----EL-HMVFYNKDYDSS-----DRAQG- 184
G+N + +D + + S P+ +L H V K + +G
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 185 --YKDGLVVLASFFELA----EFRHLHKKANKYL------THNSRPVQPLSGRPIWYNAA 232
+ GLV A F +KA L + + P L P +
Sbjct: 271 TGHSQGLVT-AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP--PSILEDS 327
Query: 233 DEFSESSTLRPTLFGITML 251
E +E P+ ML
Sbjct: 328 LENNEGV---PSP----ML 339
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 28.5 bits (63), Expect = 2.8
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 45 VVGSESKFL----QSSILHVRPERWSEDFHQCTGKYQS 78
S K L Q+S++HV+ + E F++ + +
Sbjct: 361 ETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTT 398
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,083,588
Number of extensions: 233751
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 50
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)