RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6463
(259 letters)
>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
isozyme III [TaxId: 10116]}
Length = 259
Score = 129 bits (325), Expect = 5e-37
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARVSLPELKFFGFDQEP-TSTVITNNGHTVMLN- 119
PE W E + G QSPI++ + P L+ + +P ++ I NNG T +
Sbjct: 12 PEHWHELYPIAKGDNQSPIELHTKDI--RHDPSLQPWSVSYDPGSAKTILNNGKTCRVVF 69
Query: 120 PTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSS 179
+ + GGPL Y Q H HWG +D GSE ++ Y ELH+V +N Y++
Sbjct: 70 DDTFDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNPKYNTF 129
Query: 180 DRAQGYKDGLVVLASFFELAEFRHLHKKANKYLTHNSRPVQ 220
A DG+ V+ F ++ + + L +
Sbjct: 130 GEALKQPDGIAVVGIFLKIGREKGEFQILLDALDKIKTKGK 170
Score = 38.3 bits (88), Expect = 5e-04
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 190 VVLASFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
+ S ++A+ R L + L N RP QP+ GR + +
Sbjct: 213 PMTVSSDQMAKLRSLFASAENEPPVPLVGNWRPPQPIKGRVVRAS 257
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 124 bits (312), Expect = 4e-35
Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 8/146 (5%)
Query: 62 PERWSEDFHQCTGKYQSPIDIE-ETLVARVSLPELKFFGFDQEPTSTV-ITNNGHTVMLN 119
+ W + +C G QSPI+I+ ++++ LP ++ G+DQ T + + NNGHTV L+
Sbjct: 11 QDHWPTSYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLDLHNNGHTVQLS 70
Query: 120 PTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSV-GSEDLINNRSYPMELHMVFYNKD-YD 177
P + G L KY +QLH HWG S+ GSE IN+ + ELH+V Y+ Y
Sbjct: 71 L----PPTLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVVHYDSQSYS 126
Query: 178 SSDRAQGYKDGLVVLASFFELAEFRH 203
S A GL VL E+ E +
Sbjct: 127 SLSEAAQKPQGLAVLGILIEVGETEN 152
Score = 37.9 bits (87), Expect = 6e-04
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 194 SFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
S +L + + + ++ L N R QPL+ R I+ +
Sbjct: 218 SMGQLEKLQETLSSTEEDPSEPLVQNYRVPQPLNQRTIFAS 258
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme II [TaxId: 9606]}
Length = 259
Score = 123 bits (309), Expect = 9e-35
Identities = 51/168 (30%), Positives = 73/168 (43%), Gaps = 2/168 (1%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVMLNPT 121
PE W +DF G+ QSP+DI+ + +DQ TS I NNGH +
Sbjct: 12 PEHWHKDFPIAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQ-ATSLRILNNGHAFNVEFD 70
Query: 122 FKEEPYII-GGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSD 180
++ ++ GGPL Y Q HFHWG D GSE ++ + Y ELH+V +N Y
Sbjct: 71 DSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWNTKYGDFG 130
Query: 181 RAQGYKDGLVVLASFFELAEFRHLHKKANKYLTHNSRPVQPLSGRPIW 228
+A DGL VL F ++ + +K L +
Sbjct: 131 KAVQQPDGLAVLGIFLKVGSAKPGLQKVVDVLDSIKTKGKSADFTNFD 178
Score = 37.5 bits (86), Expect = 9e-04
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 190 VVLASFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
+ S ++ +FR L + + + N RP QPL R I +
Sbjct: 213 PISVSSEQVLKFRKLNFNGEGEPEELMVDNWRPAQPLKNRQIKAS 257
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 121 bits (303), Expect = 7e-34
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTSTVITNNGHTVMLNP 120
P +W C QSPI+I T L F G+D+ + + NNGH+VM+
Sbjct: 17 PVKWGG---NCQKDRQSPINIVTTKAKVDKKLGRFFFSGYDK-KQTWTVQNNGHSVMML- 71
Query: 121 TFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSD 180
+ + I GG L Y QLH HW GSE ++ + ME+H+V + S +
Sbjct: 72 -LENKASISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKEKGTSRN 130
Query: 181 --RAQGYKDGLVVLASFFELAEFRH 203
AQ +D + VLA E +
Sbjct: 131 VKEAQDPEDEIAVLAFLVEAGTQVN 155
Score = 34.1 bits (77), Expect = 0.012
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 190 VVLASFFELAEFRHL---HKKANKYLTHNSRPVQPLSGRPI 227
+ ++ F K+ + N RP+Q L R +
Sbjct: 219 PIQLHREQILAFSQKLYYDKEQTVSMKDNVRPLQQLGQRTV 259
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 120 bits (301), Expect = 1e-33
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVMLNPT 121
PE+WS+ + G QSP+DI+ + + + ++ T+ I N GH+ +N
Sbjct: 11 PEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNP-ATAKEIINVGHSFHVNFE 69
Query: 122 FKEEPYII-GGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKD-YDSS 179
+ ++ GGP Y Q HFHWG + GSE ++ Y ELH+ +N Y S
Sbjct: 70 DNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSL 129
Query: 180 DRAQGYKDGLVVLASFFELAEFRHLHKKANKYLTHNSRPVQ 220
A DGL V+ ++ E +K L +
Sbjct: 130 AEAASKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTKGK 170
Score = 37.1 bits (85), Expect = 0.001
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 190 VVLASFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
+ S +LA+FR L + HN+RP QPL GR + +
Sbjct: 213 SISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLKGRTVRAS 257
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 111 bits (278), Expect = 3e-30
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTST-VITNNGHTVMLN 119
WS+ + C G QSPID+ ++ SL L+F G++ ++TNNGH+V LN
Sbjct: 10 ENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLN 69
Query: 120 PTFKEEPYIIGGPLGFKYVFSQLHFHWG-VNDSVGSEDLINNRSYPMELHMVFYNKD-YD 177
+ L +Y +QLH HWG ND GSE ++ + + ELH+V YN D Y
Sbjct: 70 L----PSDMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYP 125
Query: 178 SSDRAQGYKDGLVVLASFFELAEFRHLHKKANKYLTHNSRP 218
+ A +GL VLA E+ F + K +L H
Sbjct: 126 DASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQHVKYK 166
Score = 39.1 bits (90), Expect = 3e-04
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 192 LASFFELAEFRHLHKKANKYLTHNSRPVQPLSGRPIWYN 230
L + H+ + + + +N R VQ R ++ +
Sbjct: 220 LLALETALYCTHMDDPSPREMINNFRQVQKFDERLVYTS 258
>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme IV [TaxId: 10090]}
Length = 258
Score = 109 bits (274), Expect = 1e-29
Identities = 46/143 (32%), Positives = 59/143 (41%), Gaps = 11/143 (7%)
Query: 62 PERWSEDFHQCTGKYQSPIDIEETLVARV-SLPELKFFGFDQEPTSTVITNNGHTVMLNP 120
PE+W C QSPI+I L G+DQ I NN HTV +
Sbjct: 17 PEKWPG---ACKENQQSPINIVTARTKVNPRLTPFILVGYDQ-KQQWPIKNNQHTVEMT- 71
Query: 121 TFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYDSSD 180
IIGG L +Y QLH HW + GSE I+ R + ME+H+V D
Sbjct: 72 -LGGGACIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVHKKLTSSKED 130
Query: 181 RAQGYKDGLVVLASFFELAEFRH 203
KD VLA E+ + +
Sbjct: 131 S----KDKFAVLAFMIEVGDKVN 149
Score = 39.1 bits (90), Expect = 3e-04
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 194 SFFELAEFRHL---HKKANKYLTHNSRPVQPLSGRPIWYNAA 232
+ EF + + N RP+QPL R ++ + A
Sbjct: 217 HKNQFLEFSKNLYYDEDQKLNMKDNVRPLQPLGKRQVFKSHA 258
>d1keqa_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
liver, isozyme V [TaxId: 10090]}
Length = 238
Score = 107 bits (268), Expect = 6e-29
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
Query: 74 GKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVMLNPTFK-EEPYIIGGP 132
G QSPI+I+ +D + + N G+ + E+ I GGP
Sbjct: 1 GTRQSPINIQWKDSVYDPQLAPLRVSYD-AASCRYLWNTGYAFQVEFDDSCEDSGISGGP 59
Query: 133 LGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKD-YDSSDRAQGYKDGLVV 191
LG Y Q HFHWG D GSE ++ +YP ELH+V +N Y++ +A ++GL V
Sbjct: 60 LGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENCKKASVGENGLAV 119
Query: 192 LASFFELAEFRHLHKKANKYLTHNSRPVQPLSGRPI 227
+ F +L +K L ++ P
Sbjct: 120 IGVFLKLGAHHQALQKLVDVLPEVRHKDTQVAMGPF 155
Score = 36.7 bits (84), Expect = 0.001
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 194 SFFELAEFRHL----HKKANKYLTHNSRPVQPLSGRPIWYN 230
S +L+ FR L + + +N RP+QPL R + +
Sbjct: 195 SPSQLSMFRTLLFSGRGEEEDVMVNNYRPLQPLRDRKLRSS 235
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 223
Score = 75.7 bits (185), Expect = 4e-17
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 62 PERW---SEDFHQC-TGKYQSPIDIEETLVARVSLPELKFFGFDQEPTSTVITNNGHTVM 117
PE W SE+F C TGK QSP++I ET+ +L + +P+ + NNGHT+
Sbjct: 12 PESWGNLSEEFRLCSTGKNQSPVNITETVS-----GKLPAIKVNYKPSMVDVENNGHTIQ 66
Query: 118 LNPTFKEEPYIIGGPLGFKYVFSQLHFHWGVNDSVGSEDLINNRSYPMELHMVFYNKDYD 177
+N + G Y Q HFH SE+ I R++PME H V +++
Sbjct: 67 VNYPEGGNTLTVNG---RTYTLKQFHFHVP------SENQIKGRTFPMEAHFVHLDENKQ 117
Query: 178 SSDRAQGYKDG 188
A Y+ G
Sbjct: 118 PLVLAVLYEAG 128
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 26.0 bits (57), Expect = 1.1
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 76 YQSPIDIEETLVARVSLPELKFFGFDQEPTSTV--ITNNGHTVMLNPTFK 123
Y+ P E+ VAR ++ LK V + NN V ++P K
Sbjct: 7 YRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLK 56
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 388
Score = 25.3 bits (55), Expect = 8.0
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 167 LHMVFYNKDYDSSDRAQGYKDGLVVLASFFELAEFRHLHKKANKYLTHNSRPVQPLSGRP 226
+ M NKD+ +D L S ++ R H + + ++ R
Sbjct: 72 ITMDVINKDHQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERS 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 999,780
Number of extensions: 45371
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 23
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)