Query psy6464
Match_columns 96
No_of_seqs 111 out of 1179
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 18:34:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01135 V_A-ATPase_B V/A-type 100.0 3.7E-39 8.1E-44 246.2 9.1 93 1-93 139-233 (276)
2 cd01133 F1-ATPase_beta F1 ATP 100.0 2.5E-38 5.3E-43 241.4 10.4 93 1-93 136-228 (274)
3 COG1157 FliI Flagellar biosynt 100.0 4.8E-38 1E-42 250.6 9.6 91 2-93 228-318 (441)
4 TIGR01041 ATP_syn_B_arch ATP s 100.0 6.1E-38 1.3E-42 252.5 9.9 92 1-93 211-305 (458)
5 PRK04196 V-type ATP synthase s 100.0 6.6E-38 1.4E-42 252.4 9.9 92 1-93 213-307 (460)
6 PRK06936 type III secretion sy 100.0 1.1E-37 2.4E-42 250.0 10.0 92 1-93 226-317 (439)
7 PRK02118 V-type ATP synthase s 100.0 1.3E-37 2.8E-42 249.4 9.9 93 1-93 204-297 (436)
8 cd01132 F1_ATPase_alpha F1 ATP 100.0 2.1E-37 4.5E-42 236.3 9.8 92 1-93 135-230 (274)
9 TIGR01039 atpD ATP synthase, F 100.0 2.2E-37 4.8E-42 249.4 10.3 93 1-93 210-302 (461)
10 TIGR03497 FliI_clade2 flagella 100.0 2.6E-37 5.7E-42 246.1 10.2 92 1-93 201-292 (413)
11 TIGR03305 alt_F1F0_F1_bet alte 100.0 2.6E-37 5.6E-42 248.4 10.1 92 1-93 205-297 (449)
12 CHL00060 atpB ATP synthase CF1 100.0 2.8E-37 6E-42 250.4 10.2 92 1-93 235-327 (494)
13 PRK09280 F0F1 ATP synthase sub 100.0 3.1E-37 6.7E-42 248.7 10.2 92 1-93 211-303 (463)
14 PRK08972 fliI flagellum-specif 100.0 3.4E-37 7.4E-42 247.4 10.1 92 1-93 226-319 (444)
15 TIGR03324 alt_F1F0_F1_al alter 100.0 4.1E-37 8.8E-42 249.6 9.9 92 1-93 228-323 (497)
16 PRK05688 fliI flagellum-specif 100.0 4.8E-37 1E-41 247.0 10.2 92 1-93 232-325 (451)
17 PRK09099 type III secretion sy 100.0 4.6E-37 1E-41 246.5 9.9 92 1-93 227-318 (441)
18 PRK07594 type III secretion sy 100.0 4.8E-37 1E-41 246.0 9.9 92 1-93 219-310 (433)
19 PRK05922 type III secretion sy 100.0 6.7E-37 1.5E-41 245.2 10.4 92 1-93 221-312 (434)
20 TIGR03496 FliI_clade1 flagella 100.0 6E-37 1.3E-41 243.9 9.8 92 1-93 201-294 (411)
21 PRK12597 F0F1 ATP synthase sub 100.0 9E-37 2E-41 245.9 10.3 93 1-93 210-302 (461)
22 PRK06820 type III secretion sy 100.0 8.4E-37 1.8E-41 245.0 9.9 92 1-93 227-318 (440)
23 PRK09281 F0F1 ATP synthase sub 100.0 9E-37 2E-41 247.9 10.0 92 1-93 228-323 (502)
24 TIGR03498 FliI_clade3 flagella 100.0 9.4E-37 2E-41 243.4 9.8 93 1-94 204-298 (418)
25 PRK08927 fliI flagellum-specif 100.0 9.3E-37 2E-41 244.8 9.8 93 1-94 222-316 (442)
26 PRK13343 F0F1 ATP synthase sub 100.0 1.1E-36 2.4E-41 247.4 10.1 92 1-93 228-323 (502)
27 TIGR01040 V-ATPase_V1_B V-type 100.0 8.6E-37 1.9E-41 246.1 9.3 92 1-93 220-314 (466)
28 PRK08149 ATP synthase SpaL; Va 100.0 1.7E-36 3.6E-41 242.6 9.8 92 1-93 215-306 (428)
29 PTZ00185 ATPase alpha subunit; 100.0 1.9E-36 4.1E-41 247.4 10.0 93 1-94 263-359 (574)
30 cd01136 ATPase_flagellum-secre 100.0 2.1E-36 4.5E-41 235.2 9.8 92 1-93 133-224 (326)
31 CHL00059 atpA ATP synthase CF1 100.0 2.1E-36 4.6E-41 244.8 9.9 92 1-93 207-302 (485)
32 TIGR00962 atpA proton transloc 100.0 2.8E-36 6E-41 245.0 9.8 92 1-93 227-322 (501)
33 PRK08472 fliI flagellum-specif 100.0 5.1E-36 1.1E-40 240.1 9.8 92 1-93 220-312 (434)
34 PRK07960 fliI flagellum-specif 100.0 8.5E-36 1.8E-40 239.9 9.9 92 1-93 239-332 (455)
35 cd01134 V_A-ATPase_A V/A-type 100.0 1.1E-35 2.4E-40 234.0 10.1 92 1-93 228-326 (369)
36 PRK06002 fliI flagellum-specif 100.0 1E-35 2.3E-40 239.2 9.9 92 1-93 228-321 (450)
37 PF00006 ATP-synt_ab: ATP synt 100.0 7.3E-36 1.6E-40 220.6 8.0 92 1-93 79-174 (215)
38 TIGR01043 ATP_syn_A_arch ATP s 100.0 2.3E-35 5E-40 242.5 10.2 92 1-93 293-391 (578)
39 PRK04192 V-type ATP synthase s 100.0 7.9E-35 1.7E-39 239.6 10.1 92 1-93 298-394 (586)
40 TIGR01026 fliI_yscN ATPase Fli 100.0 9E-35 2E-39 233.1 9.9 92 1-93 227-318 (440)
41 TIGR01042 V-ATPase_V1_A V-type 100.0 1.1E-34 2.4E-39 238.5 10.0 92 1-93 299-397 (591)
42 PRK07165 F0F1 ATP synthase sub 100.0 1.1E-34 2.3E-39 235.8 9.6 90 2-93 209-299 (507)
43 TIGR02546 III_secr_ATP type II 100.0 4.9E-34 1.1E-38 227.6 9.8 92 1-93 209-300 (422)
44 PRK14698 V-type ATP synthase s 100.0 1.2E-33 2.7E-38 243.4 10.0 92 1-93 727-825 (1017)
45 PRK07196 fliI flagellum-specif 100.0 3.4E-33 7.4E-38 223.9 8.5 92 1-93 219-311 (434)
46 PRK07721 fliI flagellum-specif 100.0 7.4E-33 1.6E-37 222.0 9.6 92 1-93 222-313 (438)
47 COG0056 AtpA F0F1-type ATP syn 100.0 1E-32 2.2E-37 221.7 8.5 91 2-93 229-323 (504)
48 COG0055 AtpD F0F1-type ATP syn 100.0 4.2E-32 9.1E-37 215.5 5.2 93 1-93 214-306 (468)
49 PRK06793 fliI flagellum-specif 100.0 1.4E-30 3.1E-35 208.7 9.7 91 1-93 220-310 (432)
50 KOG1350|consensus 100.0 1.3E-29 2.8E-34 199.7 3.1 93 1-93 264-356 (521)
51 PRK12608 transcription termina 99.9 3.6E-28 7.7E-33 192.4 8.7 90 1-92 194-284 (380)
52 PRK09376 rho transcription ter 99.9 1.4E-27 3E-32 190.5 9.4 90 1-92 230-320 (416)
53 PRK06315 type III secretion sy 99.9 1.4E-27 3E-32 192.0 7.1 92 1-93 229-320 (442)
54 PRK12678 transcription termina 99.9 9.5E-27 2.1E-31 192.6 8.5 86 1-92 477-567 (672)
55 TIGR00767 rho transcription te 99.9 1.7E-26 3.7E-31 184.3 9.3 90 1-92 229-319 (415)
56 cd01128 rho_factor Transcripti 99.9 7.8E-25 1.7E-29 164.6 8.4 91 1-93 77-168 (249)
57 COG1156 NtpB Archaeal/vacuolar 99.9 9.5E-25 2.1E-29 174.3 6.1 92 2-93 217-310 (463)
58 KOG1351|consensus 99.9 2.7E-24 5.8E-29 168.5 7.7 93 2-94 243-337 (489)
59 KOG1352|consensus 99.9 1.6E-22 3.6E-27 162.5 6.4 91 2-93 319-416 (618)
60 COG1155 NtpA Archaeal/vacuolar 99.9 1.7E-22 3.8E-27 165.0 3.5 91 2-93 296-393 (588)
61 COG1158 Rho Transcription term 99.7 1.1E-18 2.4E-23 137.7 4.9 90 1-92 234-324 (422)
62 cd01120 RecA-like_NTPases RecA 94.2 0.18 3.9E-06 33.0 5.6 65 17-94 75-139 (165)
63 PF00975 Thioesterase: Thioest 63.3 13 0.00029 25.9 3.9 26 11-37 76-103 (229)
64 PF13561 adh_short_C2: Enoyl-( 60.9 20 0.00044 25.5 4.5 67 14-85 8-76 (241)
65 PRK10037 cell division protein 57.5 13 0.00027 27.3 3.0 22 14-36 18-40 (250)
66 COG0541 Ffh Signal recognition 54.8 15 0.00033 30.5 3.3 38 14-53 116-153 (451)
67 PF00070 Pyr_redox: Pyridine n 54.2 20 0.00044 21.4 3.1 47 12-76 8-54 (80)
68 PF03033 Glyco_transf_28: Glyc 53.0 22 0.00049 22.9 3.4 24 13-37 13-36 (139)
69 PRK13185 chlL protochlorophyll 50.7 19 0.00041 26.4 3.0 21 14-35 18-39 (270)
70 KOG1434|consensus 50.5 13 0.00028 29.5 2.2 21 17-38 201-221 (335)
71 cd02117 NifH_like This family 48.8 22 0.00048 25.2 3.1 21 14-35 16-37 (212)
72 COG0569 TrkA K+ transport syst 48.3 32 0.00068 25.3 3.9 31 12-43 9-39 (225)
73 cd08620 PI-PLCXDc_like_1 Catal 46.8 63 0.0014 25.0 5.5 61 20-93 148-210 (281)
74 TIGR01281 DPOR_bchL light-inde 46.8 24 0.00052 25.9 3.0 19 14-33 16-34 (268)
75 PF01656 CbiA: CobQ/CobB/MinD/ 45.0 28 0.00061 23.5 3.0 23 13-36 14-36 (195)
76 PF09369 DUF1998: Domain of un 44.4 25 0.00053 21.7 2.4 34 27-77 34-69 (84)
77 PRK05728 DNA polymerase III su 44.0 34 0.00073 23.5 3.3 25 12-37 15-39 (142)
78 cd02036 MinD Bacterial cell di 43.8 30 0.00064 23.1 2.9 23 13-36 15-37 (179)
79 PF13450 NAD_binding_8: NAD(P) 43.8 38 0.00083 20.1 3.1 23 13-37 6-28 (68)
80 cd02042 ParA ParA and ParB of 43.0 34 0.00074 21.1 3.0 20 13-33 15-34 (104)
81 TIGR03590 PseG pseudaminic aci 43.0 29 0.00064 26.0 3.1 27 13-40 18-44 (279)
82 PRK06197 short chain dehydroge 41.9 51 0.0011 24.4 4.2 35 13-48 27-61 (306)
83 PRK13235 nifH nitrogenase redu 41.0 33 0.00073 25.3 3.1 19 14-33 17-35 (274)
84 PF10740 DUF2529: Protein of u 40.9 23 0.0005 25.9 2.1 44 14-58 96-145 (172)
85 COG2256 MGS1 ATPase related to 40.5 33 0.00072 28.5 3.2 35 14-49 91-125 (436)
86 TIGR01287 nifH nitrogenase iro 40.3 34 0.00074 25.2 3.0 21 14-35 16-37 (275)
87 KOG1210|consensus 40.0 50 0.0011 26.5 4.0 60 14-75 45-106 (331)
88 TIGR00611 recf recF protein. A 38.9 56 0.0012 25.8 4.2 30 14-43 288-317 (365)
89 PRK13232 nifH nitrogenase redu 38.6 37 0.0008 25.1 3.0 19 14-33 17-35 (273)
90 PRK13230 nitrogenase reductase 37.8 41 0.00088 24.9 3.1 19 14-33 17-35 (279)
91 PRK13234 nifH nitrogenase redu 37.8 38 0.00083 25.7 3.0 21 14-35 20-41 (295)
92 PRK00771 signal recognition pa 37.4 1E+02 0.0022 25.2 5.6 27 14-41 111-137 (437)
93 TIGR00631 uvrb excinuclease AB 36.4 1.1E+02 0.0025 26.3 5.9 39 15-54 43-81 (655)
94 COG2927 HolC DNA polymerase II 36.2 52 0.0011 23.3 3.2 23 14-37 17-39 (144)
95 PRK12446 undecaprenyldiphospho 35.7 49 0.0011 25.7 3.4 23 13-36 16-38 (352)
96 cd02032 Bchl_like This family 35.2 45 0.00098 24.4 3.0 19 14-33 16-34 (267)
97 PF04364 DNA_pol3_chi: DNA pol 34.8 55 0.0012 22.3 3.2 25 12-37 15-39 (137)
98 PRK08340 glucose-1-dehydrogena 34.7 81 0.0018 22.5 4.2 34 13-47 11-44 (259)
99 COG1195 RecF Recombinational D 34.5 92 0.002 25.2 4.8 37 16-52 290-326 (363)
100 COG5000 NtrY Signal transducti 34.0 37 0.00079 29.8 2.6 22 27-48 464-485 (712)
101 COG4874 Uncharacterized protei 33.8 1.2E+02 0.0026 23.9 5.1 44 11-69 54-98 (318)
102 COG0300 DltE Short-chain dehyd 33.6 80 0.0017 24.3 4.2 37 14-51 18-54 (265)
103 PRK05298 excinuclease ABC subu 33.6 1.4E+02 0.003 25.5 6.0 39 15-54 46-84 (652)
104 cd01983 Fer4_NifH The Fer4_Nif 33.5 62 0.0013 18.7 2.9 20 13-33 14-33 (99)
105 PF09861 DUF2088: Domain of un 33.4 24 0.00051 26.0 1.2 17 27-43 54-70 (204)
106 COG4052 Uncharacterized protei 33.1 20 0.00044 28.0 0.8 42 4-51 80-122 (310)
107 PF13614 AAA_31: AAA domain; P 32.8 60 0.0013 21.3 3.0 25 12-37 15-39 (157)
108 cd02040 NifH NifH gene encodes 32.7 52 0.0011 23.8 2.9 21 14-35 17-38 (270)
109 PF04127 DFP: DNA / pantothena 32.7 56 0.0012 23.6 3.0 25 11-36 28-52 (185)
110 cd02037 MRP-like MRP (Multiple 32.6 66 0.0014 21.8 3.3 25 14-39 16-40 (169)
111 cd02038 FleN-like FleN is a me 32.2 61 0.0013 21.5 3.0 23 13-36 15-37 (139)
112 PRK13236 nitrogenase reductase 32.1 55 0.0012 24.8 3.1 19 14-33 22-40 (296)
113 PRK08217 fabG 3-ketoacyl-(acyl 32.1 99 0.0021 21.5 4.2 35 12-47 15-49 (253)
114 PF01637 Arch_ATPase: Archaeal 31.7 56 0.0012 22.4 2.8 25 16-41 107-131 (234)
115 COG0446 HcaD Uncharacterized N 31.5 67 0.0014 24.1 3.4 24 12-36 145-168 (415)
116 PRK09620 hypothetical protein; 30.9 61 0.0013 24.0 3.1 23 11-34 28-50 (229)
117 PRK11150 rfaD ADP-L-glycero-D- 30.9 71 0.0015 23.5 3.4 27 11-38 8-34 (308)
118 PRK13394 3-hydroxybutyrate deh 30.6 1.2E+02 0.0027 21.2 4.5 34 12-46 17-50 (262)
119 PF13579 Glyco_trans_4_4: Glyc 30.4 92 0.002 19.5 3.5 25 13-38 5-29 (160)
120 PRK12429 3-hydroxybutyrate deh 30.3 1.2E+02 0.0025 21.3 4.3 27 12-39 14-40 (258)
121 PF13685 Fe-ADH_2: Iron-contai 30.2 1.2E+02 0.0027 22.9 4.7 35 18-53 10-44 (250)
122 TIGR01007 eps_fam capsular exo 30.1 64 0.0014 22.5 2.9 24 13-37 33-56 (204)
123 PHA02518 ParA-like protein; Pr 29.3 67 0.0015 22.1 2.9 28 14-42 17-48 (211)
124 PRK08251 short chain dehydroge 28.9 1.2E+02 0.0026 21.2 4.2 28 13-41 13-40 (248)
125 PRK07326 short chain dehydroge 28.5 1.2E+02 0.0026 21.0 4.1 27 12-39 16-42 (237)
126 cd00802 class_I_aaRS_core cata 28.2 1.3E+02 0.0028 19.9 4.1 30 7-37 15-46 (143)
127 COG0542 clpA ATP-binding subun 28.1 91 0.002 27.8 4.0 44 13-60 536-579 (786)
128 PRK07035 short chain dehydroge 28.0 1.2E+02 0.0027 21.3 4.2 34 13-47 19-52 (252)
129 cd02034 CooC The accessory pro 27.9 98 0.0021 20.3 3.4 24 13-37 14-37 (116)
130 TIGR02016 BchX chlorophyllide 27.8 69 0.0015 24.5 3.0 22 14-36 16-37 (296)
131 PRK06732 phosphopantothenate-- 27.8 72 0.0016 23.4 3.0 23 11-34 25-47 (229)
132 PF14336 DUF4392: Domain of un 27.7 99 0.0021 23.9 3.8 40 13-55 63-102 (291)
133 PRK06483 dihydromonapterin red 27.6 1.3E+02 0.0028 21.0 4.2 25 13-38 13-37 (236)
134 PRK06935 2-deoxy-D-gluconate 3 27.3 1.4E+02 0.003 21.2 4.4 33 13-47 26-58 (258)
135 PRK12826 3-ketoacyl-(acyl-carr 27.2 1.3E+02 0.0028 20.9 4.1 29 12-41 16-44 (251)
136 PF13439 Glyco_transf_4: Glyco 27.2 1.2E+02 0.0027 19.2 3.8 26 12-38 15-40 (177)
137 PRK06646 DNA polymerase III su 27.2 85 0.0019 22.1 3.1 26 12-38 15-40 (154)
138 PRK06194 hypothetical protein; 27.2 1.3E+02 0.0028 21.7 4.3 27 12-39 16-42 (287)
139 TIGR03371 cellulose_yhjQ cellu 27.0 77 0.0017 22.5 3.0 23 14-37 18-40 (246)
140 PRK08703 short chain dehydroge 27.0 1.4E+02 0.0029 20.9 4.2 34 13-47 17-50 (239)
141 PF13839 PC-Esterase: GDSL/SGN 26.4 55 0.0012 23.3 2.1 23 18-40 6-28 (263)
142 PRK05854 short chain dehydroge 26.4 1.3E+02 0.0028 22.6 4.2 35 13-48 25-59 (313)
143 PF13587 DJ-1_PfpI_N: N-termin 26.3 10 0.00022 20.8 -1.4 15 28-42 1-15 (38)
144 TIGR01969 minD_arch cell divis 26.2 81 0.0018 22.3 3.0 20 14-34 17-36 (251)
145 PRK08213 gluconate 5-dehydroge 26.1 1.4E+02 0.003 21.2 4.2 26 12-38 22-47 (259)
146 PRK00711 D-amino acid dehydrog 26.1 80 0.0017 24.3 3.1 24 12-36 9-32 (416)
147 smart00382 AAA ATPases associa 26.0 85 0.0018 18.9 2.7 22 29-50 79-100 (148)
148 COG0193 Pth Peptidyl-tRNA hydr 25.5 42 0.00091 24.9 1.4 27 11-38 70-96 (190)
149 TIGR03012 sulf_tusD_dsrE sulfu 25.5 1E+02 0.0023 20.6 3.2 28 10-38 14-43 (127)
150 TIGR02114 coaB_strep phosphopa 25.4 82 0.0018 23.1 2.9 21 12-33 25-45 (227)
151 TIGR01968 minD_bact septum sit 25.1 86 0.0019 22.3 2.9 23 13-36 17-39 (261)
152 TIGR00347 bioD dethiobiotin sy 25.1 1E+02 0.0022 20.7 3.2 20 13-33 13-32 (166)
153 PRK14079 recF recombination pr 25.0 1.3E+02 0.0028 23.6 4.0 30 14-43 276-305 (349)
154 PF07693 KAP_NTPase: KAP famil 24.9 61 0.0013 24.0 2.2 35 18-53 163-202 (325)
155 PRK06196 oxidoreductase; Provi 24.8 1.4E+02 0.0031 22.1 4.2 32 13-45 37-68 (315)
156 PLN02896 cinnamyl-alcohol dehy 24.8 1.5E+02 0.0032 22.5 4.3 28 11-39 19-46 (353)
157 PRK12744 short chain dehydroge 24.8 1.6E+02 0.0035 20.8 4.3 23 13-36 19-41 (257)
158 PRK07067 sorbitol dehydrogenas 24.7 1.5E+02 0.0032 21.0 4.1 28 12-40 16-43 (257)
159 PRK08643 acetoin reductase; Va 24.5 1.6E+02 0.0034 20.8 4.2 23 13-36 13-35 (256)
160 PRK06603 enoyl-(acyl carrier p 24.4 1.9E+02 0.0042 20.8 4.7 32 14-47 22-53 (260)
161 TIGR01292 TRX_reduct thioredox 24.2 1E+02 0.0022 22.1 3.2 22 12-35 9-30 (300)
162 PRK13233 nifH nitrogenase redu 24.0 91 0.002 22.9 2.9 20 14-33 18-37 (275)
163 PRK06720 hypothetical protein; 23.4 2.2E+02 0.0048 19.7 4.7 35 13-48 27-61 (169)
164 PRK07062 short chain dehydroge 23.3 1.7E+02 0.0038 20.7 4.3 34 13-47 19-52 (265)
165 PRK12937 short chain dehydroge 23.2 1.7E+02 0.0038 20.2 4.2 25 12-37 15-39 (245)
166 PRK05557 fabG 3-ketoacyl-(acyl 23.2 1.8E+02 0.004 19.9 4.3 26 12-38 15-40 (248)
167 KOG1353|consensus 23.2 25 0.00053 27.9 -0.2 25 3-28 89-113 (340)
168 PRK00207 sulfur transfer compl 23.1 1.2E+02 0.0027 20.4 3.2 31 10-41 15-47 (128)
169 COG2607 Predicted ATPase (AAA+ 23.1 76 0.0016 25.0 2.4 20 18-38 130-149 (287)
170 PRK05653 fabG 3-ketoacyl-(acyl 23.0 1.9E+02 0.0042 19.8 4.3 27 12-39 15-41 (246)
171 PF07991 IlvN: Acetohydroxy ac 23.0 1.5E+02 0.0032 21.5 3.7 31 14-45 15-46 (165)
172 TIGR03018 pepcterm_TyrKin exop 22.9 1E+02 0.0022 21.8 3.0 23 13-36 51-74 (207)
173 cd02035 ArsA ArsA ATPase funct 22.9 1.2E+02 0.0026 21.7 3.3 26 13-39 14-39 (217)
174 PRK07233 hypothetical protein; 22.8 1E+02 0.0023 23.5 3.2 21 12-33 8-28 (434)
175 PRK12825 fabG 3-ketoacyl-(acyl 22.7 1.9E+02 0.0041 19.8 4.3 26 12-38 16-41 (249)
176 PRK14974 cell division protein 22.6 3E+02 0.0065 21.7 5.7 38 16-54 158-197 (336)
177 PRK10538 malonic semialdehyde 22.5 1.9E+02 0.0041 20.4 4.3 24 13-37 11-34 (248)
178 PLN02268 probable polyamine ox 22.3 78 0.0017 24.7 2.4 22 11-33 8-29 (435)
179 PRK05875 short chain dehydroge 22.3 1.9E+02 0.0042 20.6 4.3 28 12-40 17-44 (276)
180 PRK12743 oxidoreductase; Provi 22.3 1.8E+02 0.0039 20.6 4.2 23 13-36 13-35 (256)
181 PRK12409 D-amino acid dehydrog 22.2 1.1E+02 0.0023 23.7 3.1 21 12-33 10-30 (410)
182 PRK05867 short chain dehydroge 22.1 1.8E+02 0.0039 20.6 4.1 24 13-37 20-43 (253)
183 PRK08339 short chain dehydroge 22.1 1.8E+02 0.0039 21.0 4.2 26 13-39 19-44 (263)
184 PRK08159 enoyl-(acyl carrier p 22.1 2.1E+02 0.0046 20.9 4.6 20 14-34 24-43 (272)
185 PRK08063 enoyl-(acyl carrier p 22.0 1.9E+02 0.0042 20.1 4.2 22 13-35 15-36 (250)
186 cd03111 CpaE_like This protein 21.8 1.4E+02 0.0029 19.0 3.1 20 14-33 16-35 (106)
187 PRK08415 enoyl-(acyl carrier p 21.7 2.9E+02 0.0064 20.2 5.3 58 14-76 19-78 (274)
188 PRK06172 short chain dehydroge 21.7 1.9E+02 0.0041 20.3 4.2 26 13-39 18-43 (253)
189 COG1478 GTP and metal dependen 21.6 1.2E+02 0.0025 23.6 3.1 26 14-39 130-156 (257)
190 COG0034 PurF Glutamine phospho 21.5 53 0.0012 27.6 1.4 15 27-41 348-362 (470)
191 PLN02986 cinnamyl-alcohol dehy 21.5 1.3E+02 0.0029 22.2 3.4 27 12-39 15-41 (322)
192 cd05014 SIS_Kpsf KpsF-like pro 21.5 1.3E+02 0.0027 19.2 2.9 22 15-37 63-84 (128)
193 COG1660 Predicted P-loop-conta 21.4 92 0.002 24.5 2.6 25 8-33 254-279 (286)
194 TIGR01831 fabG_rel 3-oxoacyl-( 21.4 2E+02 0.0043 20.0 4.2 23 13-36 9-31 (239)
195 PRK07063 short chain dehydroge 21.4 2E+02 0.0043 20.4 4.2 21 13-34 18-38 (260)
196 PRK06781 amidophosphoribosyltr 21.3 53 0.0011 27.2 1.3 16 27-42 348-363 (471)
197 PRK08017 oxidoreductase; Provi 21.1 1.8E+02 0.0038 20.4 3.9 28 12-40 12-39 (256)
198 CHL00072 chlL photochlorophyll 21.1 1.1E+02 0.0024 23.2 3.0 20 14-34 16-35 (290)
199 CHL00175 minD septum-site dete 21.0 1.1E+02 0.0024 22.5 2.9 20 13-33 31-50 (281)
200 PRK07831 short chain dehydroge 20.9 2.4E+02 0.0052 20.0 4.6 31 14-45 30-60 (262)
201 PRK06139 short chain dehydroge 20.9 1.9E+02 0.0041 22.2 4.2 34 13-47 18-51 (330)
202 COG1155 NtpA Archaeal/vacuolar 20.7 90 0.002 26.9 2.5 77 4-82 294-370 (588)
203 PRK07523 gluconate 5-dehydroge 20.7 2.1E+02 0.0045 20.2 4.2 22 12-34 20-41 (255)
204 PRK08085 gluconate 5-dehydroge 20.6 2E+02 0.0044 20.2 4.1 23 13-36 20-42 (254)
205 PRK06079 enoyl-(acyl carrier p 20.5 1.9E+02 0.0041 20.7 4.0 22 14-36 21-42 (252)
206 PRK07814 short chain dehydroge 20.5 2.1E+02 0.0045 20.5 4.2 24 13-37 21-44 (263)
207 TIGR03029 EpsG chain length de 20.4 1.2E+02 0.0026 22.3 2.9 26 13-39 119-144 (274)
208 COG1184 GCD2 Translation initi 20.4 1.3E+02 0.0028 23.8 3.2 28 14-42 158-185 (301)
209 PF01195 Pept_tRNA_hydro: Pept 20.3 65 0.0014 23.2 1.5 24 14-38 70-93 (184)
210 PF13514 AAA_27: AAA domain 20.3 1.4E+02 0.003 27.1 3.7 71 12-85 1034-1108(1111)
211 PRK07631 amidophosphoribosyltr 20.3 55 0.0012 27.2 1.2 18 27-44 348-365 (475)
212 PRK06388 amidophosphoribosyltr 20.3 59 0.0013 27.0 1.4 16 27-42 356-371 (474)
213 PHA02519 plasmid partition pro 20.3 1.3E+02 0.0028 24.1 3.3 20 14-34 123-142 (387)
214 PRK08341 amidophosphoribosyltr 20.2 55 0.0012 26.9 1.2 15 27-41 334-348 (442)
215 PRK06125 short chain dehydroge 20.1 3.3E+02 0.0071 19.3 5.2 35 13-48 18-52 (259)
216 PRK08936 glucose-1-dehydrogena 20.1 2.1E+02 0.0047 20.2 4.2 23 13-36 18-40 (261)
217 KOG2754|consensus 20.1 1.3E+02 0.0029 24.9 3.3 39 17-59 94-132 (443)
218 COG1087 GalE UDP-glucose 4-epi 20.0 97 0.0021 24.9 2.5 54 11-74 9-65 (329)
219 TIGR00064 ftsY signal recognit 20.0 2.9E+02 0.0064 20.8 5.1 27 14-41 88-114 (272)
No 1
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=3.7e-39 Score=246.17 Aligned_cols=93 Identities=31% Similarity=0.493 Sum_probs=90.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
||+||++|++++|+|+++||||||++|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 139 ~~~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~ 218 (276)
T cd01135 139 ANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEG 218 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCC
Confidence 699999999999999999999999779999999999999999999999999999999999999999999999999995
Q ss_pred CCCccceeeeeecCC
Q psy6464 79 TKGSITSVQVRECPN 93 (96)
Q Consensus 79 ~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 219 ~~GSITa~~~V~~~~ 233 (276)
T cd01135 219 RNGSITQIPILTMPN 233 (276)
T ss_pred CCeeEEEEEEEEccC
Confidence 579999999999996
No 2
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=2.5e-38 Score=241.37 Aligned_cols=93 Identities=86% Similarity=1.243 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++++|+++||||||++|+|||+++||+||||+|+||||+++||+|+++||||++|+.+++|+||||++++
T Consensus 136 ~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~~~~ 215 (274)
T cd01133 136 MNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKK 215 (274)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcCCCC
Confidence 68999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|++|++|+
T Consensus 216 GSiT~~~~v~~~~ 228 (274)
T cd01133 216 GSITSVQAVYVPA 228 (274)
T ss_pred cccceEEEEEecC
Confidence 9999999999995
No 3
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.8e-38 Score=250.63 Aligned_cols=91 Identities=36% Similarity=0.577 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCCC
Q psy6464 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTKG 81 (96)
Q Consensus 2 d~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~G 81 (96)
|+||.+|.+++++|+++||||||| |||||++|||+||||+|+|||+++.||||.++||||++|+.+++|+||||++.+|
T Consensus 228 D~s~l~R~~aa~~At~IAEyFRDq-G~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~~~G 306 (441)
T COG1157 228 DESALMRLKAAFTATTIAEYFRDQ-GKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNGDKG 306 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCCCCCC
Confidence 899999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeecCC
Q psy6464 82 SITSVQVRECPN 93 (96)
Q Consensus 82 SIT~i~~v~vp~ 93 (96)
|||+|+||++-+
T Consensus 307 sITafYTVLveG 318 (441)
T COG1157 307 SITAFYTVLVEG 318 (441)
T ss_pred cEEEEEEEEeec
Confidence 999999999864
No 4
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=6.1e-38 Score=252.50 Aligned_cols=92 Identities=29% Similarity=0.470 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-hccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC-
Q psy6464 1 MNEPPGARARVALTGLTVAEYFR-DQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfr-d~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~- 78 (96)
+|+||.+|++++|+|+++||||| |+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 211 sd~p~~~R~~a~~~a~tiAEyfr~d~-G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~ 289 (458)
T TIGR01041 211 ADDPAVERIVTPRMALTAAEYLAFEK-DMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVK 289 (458)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcc-CCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCC
Confidence 58999999999999999999999 57 9999999999999999999999999999999999999999999999999985
Q ss_pred -CCCccceeeeeecCC
Q psy6464 79 -TKGSITSVQVRECPN 93 (96)
Q Consensus 79 -~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 290 ~~~GSITai~tV~~~g 305 (458)
T TIGR01041 290 GKKGSITQMPILTMPG 305 (458)
T ss_pred CCCcceEEEEEEEcCC
Confidence 689999999999996
No 5
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=6.6e-38 Score=252.37 Aligned_cols=92 Identities=30% Similarity=0.498 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-hccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC-
Q psy6464 1 MNEPPGARARVALTGLTVAEYFR-DQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfr-d~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~- 78 (96)
+|+||.+|++++|+|+++||||| |+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 213 sd~p~~~R~~a~~~a~tiAEyfr~d~-G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~ 291 (460)
T PRK04196 213 ADDPAIERILTPRMALTAAEYLAFEK-GMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIK 291 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCC
Confidence 58999999999999999999999 68 9999999999999999999999999999999999999999999999999985
Q ss_pred -CCCccceeeeeecCC
Q psy6464 79 -TKGSITSVQVRECPN 93 (96)
Q Consensus 79 -~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 292 ~~~GSITai~~V~~~g 307 (460)
T PRK04196 292 GKKGSITQIPILTMPD 307 (460)
T ss_pred CCCeeeEEEEEEEcCC
Confidence 689999999999996
No 6
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.1e-37 Score=250.02 Aligned_cols=92 Identities=34% Similarity=0.591 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||+.++
T Consensus 226 sd~p~~~R~~a~~~a~tiAEyfrd~-G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~~~ 304 (439)
T PRK06936 226 SDRPSMERAKAGFVATSIAEYFRDQ-GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDK 304 (439)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccCCC
Confidence 5899999999999999999999999 999999999999999999999999999999999999999999999999999899
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|++|++|+
T Consensus 305 GSIT~i~tVl~~g 317 (439)
T PRK06936 305 GSITALYTVLVEG 317 (439)
T ss_pred cceeeeEEEEccC
Confidence 9999999999995
No 7
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.3e-37 Score=249.44 Aligned_cols=93 Identities=30% Similarity=0.450 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcC-CC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT-TT 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~-~~ 79 (96)
||+||++|++++++|+|+||||||+.|+|||+++||+||||+|+||||+++||+|+++||||++|+++++++||||+ .+
T Consensus 204 adep~~~R~~~~~~AltiAEyfrd~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~~ 283 (436)
T PRK02118 204 ASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFED 283 (436)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCC
Confidence 79999999999999999999999993399999999999999999999999999999999999999999999999999 46
Q ss_pred CCccceeeeeecCC
Q psy6464 80 KGSITSVQVRECPN 93 (96)
Q Consensus 80 ~GSIT~i~~v~vp~ 93 (96)
+||||+||+|++|+
T Consensus 284 ~GSITai~~V~~p~ 297 (436)
T PRK02118 284 GGSITIIAVTTMPG 297 (436)
T ss_pred CeeEEEEEEEEcCC
Confidence 99999999999996
No 8
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=2.1e-37 Score=236.35 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||+|+++||||++|+.+++|+||||+.
T Consensus 135 ~d~~~~~r~~a~~~a~aiAE~fr~~-G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~ 213 (274)
T cd01132 135 ASDPAPLQYLAPYTGCAMGEYFMDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLND 213 (274)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHC-CCCEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccC
Confidence 6899999999999999999999999 9999999999999999999999999999999999999999999999999984
Q ss_pred --CCCccceeeeeecCC
Q psy6464 79 --TKGSITSVQVRECPN 93 (96)
Q Consensus 79 --~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 214 ~~~~GSIT~i~~V~~~~ 230 (274)
T cd01132 214 ELGGGSLTALPIIETQA 230 (274)
T ss_pred CCCCcceEEEEEEEcCC
Confidence 589999999999996
No 9
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=2.2e-37 Score=249.42 Aligned_cols=93 Identities=83% Similarity=1.212 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++|+|+++||||||++|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.++
T Consensus 210 sd~p~~~R~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~~~ 289 (461)
T TIGR01039 210 MNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTKT 289 (461)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCC
Confidence 68999999999999999999999933999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|++|++|+
T Consensus 290 GSITai~tVl~~g 302 (461)
T TIGR01039 290 GSITSVQAVYVPA 302 (461)
T ss_pred CceeEEEEEEccC
Confidence 9999999999995
No 10
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=2.6e-37 Score=246.11 Aligned_cols=92 Identities=36% Similarity=0.590 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++++|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||++++
T Consensus 201 sd~~~~~r~~~~~~a~tiAEyfr~~-G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~ 279 (413)
T TIGR03497 201 SDQPALMRLKAAFTATAIAEYFRDQ-GKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQK 279 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcCCCC
Confidence 6899999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|++|++|+
T Consensus 280 GSIT~~~tVl~~g 292 (413)
T TIGR03497 280 GSITGFYTVLVDG 292 (413)
T ss_pred cceeEEEEEEccC
Confidence 9999999999995
No 11
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=2.6e-37 Score=248.44 Aligned_cols=92 Identities=66% Similarity=1.031 Sum_probs=90.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh-ccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRD-QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTT 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd-~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~ 79 (96)
+|+||.+|++++++|+++|||||| + |+|||+++||+||||+|+||||+++||+|+++||||++|+.+++|+||||+.+
T Consensus 205 s~~~~~~r~~~~~~a~tiAEyfrd~~-G~~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~~ 283 (449)
T TIGR03305 205 MNEPPGARFRVGHTALTMAEYFRDDE-KQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTS 283 (449)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhc-CCceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCCC
Confidence 689999999999999999999999 6 99999999999999999999999999999999999999999999999999989
Q ss_pred CCccceeeeeecCC
Q psy6464 80 KGSITSVQVRECPN 93 (96)
Q Consensus 80 ~GSIT~i~~v~vp~ 93 (96)
+||||+|++|++|+
T Consensus 284 ~GSIT~i~~V~~~~ 297 (449)
T TIGR03305 284 DGAITSIQAVYVPA 297 (449)
T ss_pred CcCeeEEEEEEccC
Confidence 99999999999996
No 12
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=2.8e-37 Score=250.40 Aligned_cols=92 Identities=76% Similarity=1.147 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCC-cEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQ-DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTT 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~-~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~ 79 (96)
+|+||.+|++++|+|+++||||||+ |+ |||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.+
T Consensus 235 sd~p~~~R~~a~~~A~tiAEyfrd~-g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~~ 313 (494)
T CHL00060 235 MNEPPGARMRVGLTALTMAEYFRDV-NKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK 313 (494)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCCC
Confidence 6899999999999999999999999 75 999999999999999999999999999999999999999999999999988
Q ss_pred CCccceeeeeecCC
Q psy6464 80 KGSITSVQVRECPN 93 (96)
Q Consensus 80 ~GSIT~i~~v~vp~ 93 (96)
+||||+|++|++|+
T Consensus 314 ~GSITai~tVl~~g 327 (494)
T CHL00060 314 EGSITSIQAVYVPA 327 (494)
T ss_pred CCCeeEEEEEECCC
Confidence 99999999999996
No 13
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=3.1e-37 Score=248.72 Aligned_cols=92 Identities=85% Similarity=1.229 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh-ccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRD-QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTT 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd-~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~ 79 (96)
+|+||.+|++++|+|+++|||||| + |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.+
T Consensus 211 sd~p~~~r~~a~~~a~tiAEyfrd~~-G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~~ 289 (463)
T PRK09280 211 MNEPPGARLRVALTGLTMAEYFRDVE-GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK 289 (463)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhc-CCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCCC
Confidence 689999999999999999999999 8 99999999999999999999999999999999999999999999999999988
Q ss_pred CCccceeeeeecCC
Q psy6464 80 KGSITSVQVRECPN 93 (96)
Q Consensus 80 ~GSIT~i~~v~vp~ 93 (96)
+||||+|++|++|+
T Consensus 290 ~GSITai~tVl~~g 303 (463)
T PRK09280 290 KGSITSVQAVYVPA 303 (463)
T ss_pred CCceeEEEEEECcC
Confidence 99999999999995
No 14
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.4e-37 Score=247.42 Aligned_cols=92 Identities=34% Similarity=0.546 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||+.
T Consensus 226 sd~p~~~R~~a~~~A~tiAEyfrd~-G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~ 304 (444)
T PRK08972 226 ADTSPLMRLKGCETATTIAEYFRDQ-GLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGP 304 (444)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCCC
Confidence 6899999999999999999999999 9999999999999999999999999999999999999999999999999984
Q ss_pred CCCccceeeeeecCC
Q psy6464 79 TKGSITSVQVRECPN 93 (96)
Q Consensus 79 ~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 305 ~~GSITai~tVl~~g 319 (444)
T PRK08972 305 GQGSITAFYTVLTEG 319 (444)
T ss_pred CCceeeeEEEEEEeC
Confidence 489999999999996
No 15
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=4.1e-37 Score=249.63 Aligned_cols=92 Identities=28% Similarity=0.422 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcC--C
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--T 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~--~ 78 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++|||||||+||||||+++||||+++||||++|+.|++|+||||+ .
T Consensus 228 sd~p~~~r~~ap~~a~aiAEyfrd~-G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~ 306 (497)
T TIGR03324 228 GNDPPGLQYIAPYAATSIGEHFMEQ-GRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNE 306 (497)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccC
Confidence 6899999999999999999999999 999999999999999999999999999999999999999999999999998 3
Q ss_pred --CCCccceeeeeecCC
Q psy6464 79 --TKGSITSVQVRECPN 93 (96)
Q Consensus 79 --~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 307 ~~~~GSITal~~V~~~~ 323 (497)
T TIGR03324 307 ELGGGSLTALPIIETEA 323 (497)
T ss_pred CCCCcceeEEEEEEcCC
Confidence 589999999999986
No 16
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.8e-37 Score=247.00 Aligned_cols=92 Identities=34% Similarity=0.586 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCC-
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTT- 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~- 79 (96)
+|+||.+|++++++|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.+
T Consensus 232 sd~~p~~r~~a~~~a~aiAEyfrd~-G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~~ 310 (451)
T PRK05688 232 ADDAPLMRLRAAMYCTRIAEYFRDK-GKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEP 310 (451)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCCC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999964
Q ss_pred -CCccceeeeeecCC
Q psy6464 80 -KGSITSVQVRECPN 93 (96)
Q Consensus 80 -~GSIT~i~~v~vp~ 93 (96)
+||||+|+||++|+
T Consensus 311 ~~GSITai~tVl~~g 325 (451)
T PRK05688 311 GGGSITAFYTVLSEG 325 (451)
T ss_pred CCceeeEEEEEEecC
Confidence 89999999999995
No 17
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=4.6e-37 Score=246.52 Aligned_cols=92 Identities=30% Similarity=0.523 Sum_probs=90.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.++
T Consensus 227 sd~p~~~r~~a~~~a~tiAEyfrd~-G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~~~~ 305 (441)
T PRK09099 227 SDRSSIERAKAAYVATAIAEYFRDR-GLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGET 305 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcCCCC
Confidence 5899999999999999999999999 999999999999999999999999999999999999999999999999999899
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|+||++|+
T Consensus 306 GSIT~i~tVl~~~ 318 (441)
T PRK09099 306 GSITALYTVLAED 318 (441)
T ss_pred cchheeEEEEecC
Confidence 9999999999985
No 18
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=4.8e-37 Score=245.99 Aligned_cols=92 Identities=28% Similarity=0.468 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+|+.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||+|+++||||++|+.+++|+||||++++
T Consensus 219 sd~p~~~r~~a~~~a~tiAEyfrd~-G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~ 297 (433)
T PRK07594 219 SDRPALERVRALFVATTIAEFFRDN-GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK 297 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcCCCC
Confidence 5899999999999999999999999 999999999999999999999999999999999999999999999999999899
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|++|++|+
T Consensus 298 GSIT~~~tVl~~g 310 (433)
T PRK07594 298 GSITAFYTVLVEG 310 (433)
T ss_pred cchheeeeeeecC
Confidence 9999999999995
No 19
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=6.7e-37 Score=245.23 Aligned_cols=92 Identities=30% Similarity=0.416 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++++|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||+.++
T Consensus 221 sd~~~~~r~~a~~~a~tiAEyfrd~-G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~~~ 299 (434)
T PRK05922 221 AHETAPTKVIAGRAAMTIAEYFRDQ-GHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDK 299 (434)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCCCC
Confidence 5899999999999999999999999 999999999999999999999999999999999999999999999999999889
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|++|++-+
T Consensus 300 GSIT~~~tVl~~~ 312 (434)
T PRK05922 300 GSITALYAILHYP 312 (434)
T ss_pred cceeEEEEEEecC
Confidence 9999999997543
No 20
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=6e-37 Score=243.94 Aligned_cols=92 Identities=37% Similarity=0.603 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 201 sd~~~~~r~~a~~~a~tiAEyfr~~-G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~ 279 (411)
T TIGR03496 201 ADESPLMRLRAAFYATAIAEYFRDQ-GKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEE 279 (411)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccCC
Confidence 6899999999999999999999999 9999999999999999999999999999999999999999999999999994
Q ss_pred CCCccceeeeeecCC
Q psy6464 79 TKGSITSVQVRECPN 93 (96)
Q Consensus 79 ~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 280 ~~GSIT~~~tv~~~~ 294 (411)
T TIGR03496 280 GKGSITAFYTVLVEG 294 (411)
T ss_pred CCcceeEEEEEEccC
Confidence 689999999999996
No 21
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=9e-37 Score=245.92 Aligned_cols=93 Identities=71% Similarity=1.100 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++++|+++||||||++|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+|||++.++
T Consensus 210 sd~~~~~R~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~~~~ 289 (461)
T PRK12597 210 MNEPPGARMRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIASTKN 289 (461)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcCCCC
Confidence 68999999999999999999999977999999999999999999999999999999999999999999999999999889
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|+||++|+
T Consensus 290 GSIT~i~tVl~~~ 302 (461)
T PRK12597 290 GSITSIQAVYVPA 302 (461)
T ss_pred ccccEEEEEEecC
Confidence 9999999999986
No 22
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=8.4e-37 Score=244.98 Aligned_cols=92 Identities=30% Similarity=0.511 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++++|+++||||||+ |+|||+++||+||||+|+||||+++||+|+++||||++|+.+++|+||||+.++
T Consensus 227 sd~p~~~r~~a~~~a~tiAEyfrd~-G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~~~ 305 (440)
T PRK06820 227 SDRPALERLKGLSTATTIAEYFRDR-GKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDR 305 (440)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccCCC
Confidence 6899999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|+||++|+
T Consensus 306 GSIT~i~tVl~~g 318 (440)
T PRK06820 306 GSITAFYTVLVEG 318 (440)
T ss_pred cceeEEEEEEccC
Confidence 9999999999985
No 23
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=9e-37 Score=247.91 Aligned_cols=92 Identities=25% Similarity=0.376 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 228 sd~p~~~r~~a~~~a~tiAEyfrd~-G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~ 306 (502)
T PRK09281 228 ASDPAPLQYLAPYAGCAMGEYFMDN-GKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSD 306 (502)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccC
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999999999999984
Q ss_pred --CCCccceeeeeecCC
Q psy6464 79 --TKGSITSVQVRECPN 93 (96)
Q Consensus 79 --~~GSIT~i~~v~vp~ 93 (96)
++||||++++|++|+
T Consensus 307 ~~~~GSITal~~V~~~~ 323 (502)
T PRK09281 307 ELGGGSLTALPIIETQA 323 (502)
T ss_pred CCCCccEEEEEEEECCC
Confidence 689999999999996
No 24
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=9.4e-37 Score=243.36 Aligned_cols=93 Identities=38% Similarity=0.573 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 204 sd~~~~~r~~a~~~a~~iAEyfrd~-G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~~ 282 (418)
T TIGR03498 204 SDESPLMRRQAAYTATAIAEYFRDQ-GKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAE 282 (418)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCCC
Confidence 6899999999999999999999999 9999999999999999999999999999999999999999999999999973
Q ss_pred CCCccceeeeeecCCC
Q psy6464 79 TKGSITSVQVRECPNF 94 (96)
Q Consensus 79 ~~GSIT~i~~v~vp~~ 94 (96)
++||||+|+||++|+-
T Consensus 283 ~~GSIT~~~tVl~~gd 298 (418)
T TIGR03498 283 GKGSITGIFTVLVDGD 298 (418)
T ss_pred CCcceeeeEEEeccCC
Confidence 5899999999999963
No 25
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=9.3e-37 Score=244.84 Aligned_cols=93 Identities=34% Similarity=0.539 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||+.
T Consensus 222 sd~~~~~r~~a~~~a~tiAEyfrd~-G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~~ 300 (442)
T PRK08927 222 SDEPALMRRQAAYLTLAIAEYFRDQ-GKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPI 300 (442)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCCC
Confidence 6899999999999999999999999 9999999999999999999999999999999999999999999999999994
Q ss_pred CCCccceeeeeecCCC
Q psy6464 79 TKGSITSVQVRECPNF 94 (96)
Q Consensus 79 ~~GSIT~i~~v~vp~~ 94 (96)
++||||+|++|++|+-
T Consensus 301 ~~GSIT~i~tVlv~gd 316 (442)
T PRK08927 301 GEGTITGLFTVLVDGD 316 (442)
T ss_pred CCeeeeeeeeeEccCC
Confidence 5899999999999963
No 26
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=1.1e-36 Score=247.39 Aligned_cols=92 Identities=33% Similarity=0.503 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++|||||||+||||||+++||||+++||||++|+.|++|+||||+.
T Consensus 228 sd~~~~~r~~ap~~a~aiAEyfrd~-G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~ 306 (502)
T PRK13343 228 ASDPPGLQYLAPFAGCAIAEYFRDQ-GQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSP 306 (502)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhC-CCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCC
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999999999999984
Q ss_pred --CCCccceeeeeecCC
Q psy6464 79 --TKGSITSVQVRECPN 93 (96)
Q Consensus 79 --~~GSIT~i~~v~vp~ 93 (96)
++||||++++|++++
T Consensus 307 ~~~gGSITal~~V~~~~ 323 (502)
T PRK13343 307 ELGGGSLTALPIIETLA 323 (502)
T ss_pred CCCCcceEEEEEEEcCC
Confidence 689999999999986
No 27
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=8.6e-37 Score=246.07 Aligned_cols=92 Identities=30% Similarity=0.448 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-hccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC-
Q psy6464 1 MNEPPGARARVALTGLTVAEYFR-DQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfr-d~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~- 78 (96)
+|+||.+|++++|+|+++||||| ++ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~-G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~ 298 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQC-EKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE 298 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhc-CCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCC
Confidence 68999999999999999999999 57 9999999999999999999999999999999999999999999999999995
Q ss_pred -CCCccceeeeeecCC
Q psy6464 79 -TKGSITSVQVRECPN 93 (96)
Q Consensus 79 -~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 299 ~~~GSITai~tV~~~~ 314 (466)
T TIGR01040 299 GRNGSITQIPILTMPN 314 (466)
T ss_pred CCCcceEEEEEEECCC
Confidence 689999999999996
No 28
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=1.7e-36 Score=242.62 Aligned_cols=92 Identities=35% Similarity=0.509 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++++|+++||||||+ |||||+++||+||||+|+|||++++||||+++||||++|+.+++|+||||+.++
T Consensus 215 sd~p~~~r~~a~~~a~tiAE~fr~~-G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~~ 293 (428)
T PRK08149 215 SDFSSVDRCNAALVATTVAEYFRDQ-GKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATLA 293 (428)
T ss_pred CCCCHHHHHhHHHHHHHHHHHHHHc-CCCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCCCC
Confidence 6899999999999999999999999 999999999999999999999999999999999999999999999999999989
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|++|++|+
T Consensus 294 GSIT~~~tVl~~~ 306 (428)
T PRK08149 294 GSITAFYTVLLES 306 (428)
T ss_pred CCceEEEEEEecC
Confidence 9999999999985
No 29
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=247.39 Aligned_cols=93 Identities=26% Similarity=0.380 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcC---
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--- 77 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~--- 77 (96)
+|+||.+|+++||+|+++||||||+ |+|||+++|||||||+|+||||+++||||+++||||++|+.|++|+||||+
T Consensus 263 Adep~~~r~~Apy~a~tiAEYFrd~-GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlERAg~l~~ 341 (574)
T PTZ00185 263 AAEPAGLQYLAPYSGVTMGEYFMNR-GRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSP 341 (574)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccccC
Confidence 6899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCccceeeeeecCCC
Q psy6464 78 -TTKGSITSVQVRECPNF 94 (96)
Q Consensus 78 -~~~GSIT~i~~v~vp~~ 94 (96)
.++||||++|+|++|+-
T Consensus 342 ~~G~GSITAlpiV~t~ad 359 (574)
T PTZ00185 342 GKGGGSVTALPIVETLSN 359 (574)
T ss_pred CCCCcceEEEEEEEccCC
Confidence 24799999999999963
No 30
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=2.1e-36 Score=235.21 Aligned_cols=92 Identities=37% Similarity=0.586 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++++|+++||||||+ |+|||+++||+||||+|+|||++++||+|+++||||++|+.+++|+||||+.++
T Consensus 133 ~d~~~~~r~~~~~~a~~~AEyfr~~-g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~~~ 211 (326)
T cd01136 133 SDESPLLRVKAAYTATAIAEYFRDQ-GKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDK 211 (326)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCCCC
Confidence 6999999999999999999999999 999999999999999999999999999999999999999999999999999989
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|++|++|+
T Consensus 212 GSIT~i~tv~~~g 224 (326)
T cd01136 212 GSITAFYTVLVEG 224 (326)
T ss_pred CCeeeeeeeeecC
Confidence 9999999999985
No 31
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=2.1e-36 Score=244.84 Aligned_cols=92 Identities=26% Similarity=0.376 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
.|+||.+|+++||+|+++||||||+ |+|||+++|||||||+||||||+++||||+++||||++|+.|++|+||||+.
T Consensus 207 ad~~~~~r~~ap~~a~aiAEyfr~~-G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~ 285 (485)
T CHL00059 207 ADSPATLQYLAPYTGAALAEYFMYR-GRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSS 285 (485)
T ss_pred CCCCHHHHHHHHHHHhhHHHHHHHc-CCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccC
Confidence 4899999999999999999999999 9999999999999999999999999999999999999999999999999985
Q ss_pred --CCCccceeeeeecCC
Q psy6464 79 --TKGSITSVQVRECPN 93 (96)
Q Consensus 79 --~~GSIT~i~~v~vp~ 93 (96)
++||||++++|++++
T Consensus 286 ~~~~GSITal~~V~~~~ 302 (485)
T CHL00059 286 QLGEGSMTALPIVETQA 302 (485)
T ss_pred CCCCcceEEEEEEEccC
Confidence 599999999999986
No 32
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=2.8e-36 Score=245.03 Aligned_cols=92 Identities=27% Similarity=0.403 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+||.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 227 sd~p~~~r~~a~~~a~aiAEyfrd~-G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~ 305 (501)
T TIGR00962 227 ASDSASLQYLAPYTGCTMAEYFRDN-GKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLND 305 (501)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccC
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999999999999984
Q ss_pred --CCCccceeeeeecCC
Q psy6464 79 --TKGSITSVQVRECPN 93 (96)
Q Consensus 79 --~~GSIT~i~~v~vp~ 93 (96)
++||||++++|++|+
T Consensus 306 ~~g~GSITal~~V~~~~ 322 (501)
T TIGR00962 306 EKGGGSLTALPIIETQA 322 (501)
T ss_pred CCCCcceEEEEEEECCC
Confidence 379999999999986
No 33
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=5.1e-36 Score=240.14 Aligned_cols=92 Identities=34% Similarity=0.552 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCC-
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTT- 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~- 79 (96)
+|+||++|++++++++++||||||+ |+|||+++||+||||+|+|||++++||||+++||||++|+.+++|+||||+.+
T Consensus 220 sddsp~~R~~~~~~a~~iAEyFrd~-G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~g 298 (434)
T PRK08472 220 SDDSPLMRKYGAFCAMSVAEYFKNQ-GLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEG 298 (434)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHHc-CCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCCC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999975
Q ss_pred CCccceeeeeecCC
Q psy6464 80 KGSITSVQVRECPN 93 (96)
Q Consensus 80 ~GSIT~i~~v~vp~ 93 (96)
+||||+|++|++|+
T Consensus 299 ~GSIT~~~tVlv~g 312 (434)
T PRK08472 299 KGSITAFFTVLVEG 312 (434)
T ss_pred CceeeEeEEEEecC
Confidence 89999999999996
No 34
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.5e-36 Score=239.93 Aligned_cols=92 Identities=30% Similarity=0.466 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+||.+|++++++|+++||||||+ |+|||+++||+||||+|+||||+++||+|+++||||++|+.+++|+||||+.
T Consensus 239 ad~~~~~r~~~~~~a~tiAEyfrd~-G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~~ 317 (455)
T PRK07960 239 ADVSPLLRMQGAAYATRIAEDFRDR-GQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIS 317 (455)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCCC
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999999999999995
Q ss_pred CCCccceeeeeecCC
Q psy6464 79 TKGSITSVQVRECPN 93 (96)
Q Consensus 79 ~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 318 ~~GSIT~i~tVlv~~ 332 (455)
T PRK07960 318 GGGSITAFYTVLTEG 332 (455)
T ss_pred CCeeeeeEEEEEEcC
Confidence 689999999999996
No 35
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=1.1e-35 Score=233.99 Aligned_cols=92 Identities=36% Similarity=0.543 Sum_probs=88.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+|+.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||+|+++|||+++++.+++|+||||+.
T Consensus 228 s~~p~~~R~~s~yta~tiAEYfrd~-G~dVll~~Ds~tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~ 306 (369)
T cd01134 228 SNMPVAAREASIYTGITIAEYFRDM-GYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKC 306 (369)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcChhHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccc
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999999999999973
Q ss_pred -----CCCccceeeeeecCC
Q psy6464 79 -----TKGSITSVQVRECPN 93 (96)
Q Consensus 79 -----~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 307 ~~~~~~~GSIT~i~~V~~~g 326 (369)
T cd01134 307 LGSPGREGSVTIVGAVSPPG 326 (369)
T ss_pred cCCCCCCccEEEEEEEEccC
Confidence 479999999999996
No 36
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1e-35 Score=239.20 Aligned_cols=92 Identities=36% Similarity=0.579 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcC--C
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--T 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~--~ 78 (96)
+|+||.+|++++++|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||+ .
T Consensus 228 sd~~~~~r~~~~~~a~~iAEyfrd~-G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~ 306 (450)
T PRK06002 228 SDESPMMRRLAPLTATAIAEYFRDR-GENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAE 306 (450)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCCC
Confidence 5899999999999999999999999 999999999999999999999999999999999999999999999999998 3
Q ss_pred CCCccceeeeeecCC
Q psy6464 79 TKGSITSVQVRECPN 93 (96)
Q Consensus 79 ~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 307 ~~GSIT~~~tvl~~~ 321 (450)
T PRK06002 307 GGGSITGIFSVLVDG 321 (450)
T ss_pred CCeeeeEEEEEEecC
Confidence 589999999999996
No 37
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=7.3e-36 Score=220.63 Aligned_cols=92 Identities=48% Similarity=0.762 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+||.+|++++++|+++||||||+ |+|||+++||+||||+|+|||++++||+|+++|||+++|+.+++|+||||+.
T Consensus 79 ~~~~~~~r~~~~~~a~t~AEyfrd~-G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~ERag~~~~ 157 (215)
T PF00006_consen 79 SDEPPAARYRAPYTALTIAEYFRDQ-GKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYERAGKVNS 157 (215)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHT-TSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHTTSEEBST
T ss_pred chhhHHHHhhhhccchhhhHHHhhc-CCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHHHhhcccc
Confidence 6899999999999999999999998 9999999999999999999999999999999999999999999999999997
Q ss_pred --CCCccceeeeeecCC
Q psy6464 79 --TKGSITSVQVRECPN 93 (96)
Q Consensus 79 --~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 158 ~~~~GSIT~~~~v~~~~ 174 (215)
T PF00006_consen 158 EEGGGSITAIPTVLVPG 174 (215)
T ss_dssp TTTSEEEEEEEEEEEST
T ss_pred ccCCceeeeeccccccc
Confidence 899999999999985
No 38
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=2.3e-35 Score=242.47 Aligned_cols=92 Identities=37% Similarity=0.551 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+|+.+|++++|+|+|+||||||+ |+|||+++||+||||+|+||||+++||+|+++||||++++.+++||||||+.
T Consensus 293 Sn~p~~aR~~s~ytg~TiAEYfRD~-G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~ 371 (578)
T TIGR01043 293 SNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKT 371 (578)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccc
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999999999999984
Q ss_pred -----CCCccceeeeeecCC
Q psy6464 79 -----TKGSITSVQVRECPN 93 (96)
Q Consensus 79 -----~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 372 ~~~~~r~GSIT~i~aVs~~g 391 (578)
T TIGR01043 372 LGGEERVGSVTVIGAVSPPG 391 (578)
T ss_pred cCCCCCCccEeEEEEEECCC
Confidence 269999999999996
No 39
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=7.9e-35 Score=239.64 Aligned_cols=92 Identities=37% Similarity=0.568 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+|+.+|.+++|+|+|+||||||+ |+|||+++||+||||+|+||||+++||+|+++|||+++++.+++||||||+.
T Consensus 298 Sn~Pv~aR~~s~ytgiTiAEYfRd~-G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~ 376 (586)
T PRK04192 298 SNMPVAAREASIYTGITIAEYYRDM-GYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKT 376 (586)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhccccc
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999999999999984
Q ss_pred ---CCCccceeeeeecCC
Q psy6464 79 ---TKGSITSVQVRECPN 93 (96)
Q Consensus 79 ---~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 377 ~~~~~GSIT~i~aVs~pg 394 (586)
T PRK04192 377 LGGEEGSVTIIGAVSPPG 394 (586)
T ss_pred CCCCCcceEEEEEEECCC
Confidence 489999999999996
No 40
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=9e-35 Score=233.07 Aligned_cols=92 Identities=35% Similarity=0.567 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+||.+|++++++|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+|||++.++
T Consensus 227 ~d~~p~~r~~~~~~a~t~AE~frd~-G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~ 305 (440)
T TIGR01026 227 SDQSPLLRLKGAYVATAIAEYFRDQ-GKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGK 305 (440)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhccCCC
Confidence 5899999999999999999999999 999999999999999999999999999999999999999999999999999889
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|++|++++
T Consensus 306 GSIT~i~tVl~~~ 318 (440)
T TIGR01026 306 GSITAFYTVLVEG 318 (440)
T ss_pred CeeeEEEEEEccC
Confidence 9999999999985
No 41
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.1e-34 Score=238.49 Aligned_cols=92 Identities=34% Similarity=0.537 Sum_probs=88.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+|+.+|++++|+|+|+||||||+ |+|||+++||+||||+|+||||+++||+|+++|||+++|+.+++||||||+.
T Consensus 299 sd~p~~~R~~s~ytg~tiAEYfRD~-G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~ 377 (591)
T TIGR01042 299 SNMPVAAREASIYTGITLAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKC 377 (591)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCcc
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999999999999983
Q ss_pred -----CCCccceeeeeecCC
Q psy6464 79 -----TKGSITSVQVRECPN 93 (96)
Q Consensus 79 -----~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 378 ~~~~~~~GSIT~i~aVs~~g 397 (591)
T TIGR01042 378 LGSPEREGSVSIVGAVSPPG 397 (591)
T ss_pred CCCCCCCccEEEEEEEECCC
Confidence 379999999999996
No 42
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=1.1e-34 Score=235.84 Aligned_cols=90 Identities=14% Similarity=0.218 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCC-C
Q psy6464 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTT-K 80 (96)
Q Consensus 2 d~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~-~ 80 (96)
++||.+|+++||+|+++||||||+ +|||+++|||||||+|+||||+++||||+++||||++|+.|++|+||||+.+ +
T Consensus 209 sd~~~~r~~ap~~a~tiAEyfrd~--~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~g~ 286 (507)
T PRK07165 209 STSPYEQYLAPYVAMAHAENISYN--DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFKNR 286 (507)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCCCC
Confidence 469999999999999999999998 9999999999999999999999999999999999999999999999999964 7
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||++++|++|+
T Consensus 287 GSITalpiV~t~~ 299 (507)
T PRK07165 287 KTITALPILQTVD 299 (507)
T ss_pred CceEEEEEEECCC
Confidence 9999999999996
No 43
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=4.9e-34 Score=227.62 Aligned_cols=92 Identities=35% Similarity=0.555 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+|+.+|++++++++++|||||++ |+|||+++||+||||+|+||||+++||+|+++||||++|+.+++|+||||+.++
T Consensus 209 s~~p~~~r~~~~~~a~~~AE~f~~~-g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~ 287 (422)
T TIGR02546 209 SDRPSLERLKAAYTATAIAEYFRDQ-GKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGEK 287 (422)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcCCCC
Confidence 4899999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|+||++|+
T Consensus 288 GSIT~~~tv~~~~ 300 (422)
T TIGR02546 288 GSITALYTVLVEG 300 (422)
T ss_pred CceeEEEEEeccC
Confidence 9999999999996
No 44
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.2e-33 Score=243.41 Aligned_cols=92 Identities=36% Similarity=0.547 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-- 78 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-- 78 (96)
+|+|+.+|++++|+|+|+||||||+ |+|||+++||+||||+|+||||+++||+|+++||||++|+.+++|+||||+.
T Consensus 727 s~~p~~~R~~s~y~a~tiAEyfrd~-G~~Vll~~Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~ 805 (1017)
T PRK14698 727 SNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT 805 (1017)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcc
Confidence 5899999999999999999999999 9999999999999999999999999999999999999999999999999983
Q ss_pred -----CCCccceeeeeecCC
Q psy6464 79 -----TKGSITSVQVRECPN 93 (96)
Q Consensus 79 -----~~GSIT~i~~v~vp~ 93 (96)
++||||+|++|++|+
T Consensus 806 l~~~~~~GSIT~i~~V~~~g 825 (1017)
T PRK14698 806 LGSDYRVGSVSVIGAVSPPG 825 (1017)
T ss_pred cCCCCCCcceEEEEEEECCC
Confidence 679999999999996
No 45
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.4e-33 Score=223.87 Aligned_cols=92 Identities=27% Similarity=0.503 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC-C
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-T 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-~ 79 (96)
+|+|+.+|+++++.++++||||+++ |+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||+. +
T Consensus 219 ~d~s~~~rl~a~e~a~~iAEyfr~~-g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~ 297 (434)
T PRK07196 219 ADESPLMRIKATELCHAIATYYRDK-GHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSG 297 (434)
T ss_pred CCCChhhhHHHHHHHHHHHHHhhhc-cCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCCC
Confidence 4789999999999999999999999 9999999999999999999999999999999999999999999999999996 4
Q ss_pred CCccceeeeeecCC
Q psy6464 80 KGSITSVQVRECPN 93 (96)
Q Consensus 80 ~GSIT~i~~v~vp~ 93 (96)
+||||+|++|++|+
T Consensus 298 ~GSIT~~~tVl~~~ 311 (434)
T PRK07196 298 NGTMTAIYTVLAEG 311 (434)
T ss_pred CEEeeeeeEEEccC
Confidence 89999999999996
No 46
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.98 E-value=7.4e-33 Score=221.96 Aligned_cols=92 Identities=33% Similarity=0.523 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+|+.+|++++|+|+++||||||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.+++++||+++.++
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~~-g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~ 300 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQ-GLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNAS 300 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCC
Confidence 6899999999999999999999999 999999999999999999999999999999999999999999999999998778
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|+||+++.
T Consensus 301 GsIT~~~TVlv~~ 313 (438)
T PRK07721 301 GSITAFYTVLVDG 313 (438)
T ss_pred CCeeeEEEEEEEC
Confidence 9999999999985
No 47
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.98 E-value=1e-32 Score=221.68 Aligned_cols=91 Identities=30% Similarity=0.424 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcC----
Q psy6464 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT---- 77 (96)
Q Consensus 2 d~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~---- 77 (96)
++|+.+++++||+||+||||||++ |+|||+++||||++|.||||+||+++|||+|++|||++|+.|+||+|||++
T Consensus 229 Sd~a~lqYLaPy~g~a~aE~f~~~-G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e 307 (504)
T COG0056 229 SDSAPLQYLAPYAGCAMAEYFRDN-GKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDE 307 (504)
T ss_pred CcchhhhhhhhhhhhHHHHHHHhc-CCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccc
Confidence 589999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred CCCCccceeeeeecCC
Q psy6464 78 TTKGSITSVQVRECPN 93 (96)
Q Consensus 78 ~~~GSIT~i~~v~vp~ 93 (96)
.++||||++|++...+
T Consensus 308 ~g~GSiTALPIIETqa 323 (504)
T COG0056 308 LGGGSITALPIIETQA 323 (504)
T ss_pred cCCCceEeeeeEEecc
Confidence 2689999999987654
No 48
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=99.97 E-value=4.2e-32 Score=215.48 Aligned_cols=93 Identities=85% Similarity=1.230 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
||+||+.|.|++++++|+||||||++|+|||+++||++||.||.+|||.++|+.||..||+|.+.++++.|.||..++++
T Consensus 214 MNEpPGaR~RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItstk~ 293 (468)
T COG0055 214 MNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKK 293 (468)
T ss_pred cCCCCcceeeehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||++|+|+||+
T Consensus 294 GSITSiQavyvPa 306 (468)
T COG0055 294 GSITSVQAVYVPA 306 (468)
T ss_pred CceEEEEEEEecc
Confidence 9999999999997
No 49
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.97 E-value=1.4e-30 Score=208.71 Aligned_cols=91 Identities=33% Similarity=0.469 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
+|+|+++|++++++|+++||||||+ |+|||+++||+||||+|+|||++++||+|+. |||+++|+.+++|+||||+.++
T Consensus 220 sd~s~~~r~ra~~~a~~iAEyfr~~-G~~VLlilDslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~~~ 297 (432)
T PRK06793 220 SDESHLMQLRAAKLATSIAEYFRDQ-GNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKTQK 297 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCcEEEEecchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccCCC
Confidence 5899999999999999999999999 9999999999999999999999999999995 9999999999999999999999
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||++++|++|+
T Consensus 298 GSiT~~~tvlv~~ 310 (432)
T PRK06793 298 GSITGIYTVLVDG 310 (432)
T ss_pred cceEEEEEEEecC
Confidence 9999999999996
No 50
>KOG1350|consensus
Probab=99.95 E-value=1.3e-29 Score=199.73 Aligned_cols=93 Identities=94% Similarity=1.282 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
||+||+.|.|++++++++||||||++|+|||+++|+++||.||..|||.++||.|+..||+|.+.+++..+.||+..+++
T Consensus 264 MNePPGARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITtTkk 343 (521)
T KOG1350|consen 264 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK 343 (521)
T ss_pred cCCCCCceeeeeeecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||++|+++||+
T Consensus 344 GSiTSvQAvYVPA 356 (521)
T KOG1350|consen 344 GSITSVQAVYVPA 356 (521)
T ss_pred CceeEEEEEEeeh
Confidence 9999999999997
No 51
>PRK12608 transcription termination factor Rho; Provisional
Probab=99.95 E-value=3.6e-28 Score=192.37 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC-C
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-T 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-~ 79 (96)
+|+|+..|.++++.++++||||+++ |+||++++||+||||+|||||++++||+|+ +||||++|+.+++|+||||+. +
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~-GkdVVLvlDsltr~A~A~rei~~~~G~~~s-~G~~~s~~~~~~rl~~~A~~~~~ 271 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQ-GKDVVILLDSLTRLARAYNNEVESSGRTLS-GGVDARALQRPKRLFGAARNIEE 271 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCcHHHHHHHHhhhcccCCCCC-CCcChHHHhhhHHHHHhcCCCCC
Confidence 4789999999999999999999999 999999999999999999999999999999 899999999999999999995 5
Q ss_pred CCccceeeeeecC
Q psy6464 80 KGSITSVQVRECP 92 (96)
Q Consensus 80 ~GSIT~i~~v~vp 92 (96)
+||||+|+||+|.
T Consensus 272 ~GSiT~i~TvLve 284 (380)
T PRK12608 272 GGSLTIIATALVD 284 (380)
T ss_pred CcchhheEEEEEe
Confidence 9999999999996
No 52
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=99.95 E-value=1.4e-27 Score=190.48 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC-C
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-T 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-~ 79 (96)
+|+||..|+++++.++++||||+++ |+|||+++||+|||++|||||++++||+|+ +||+|++|+.+++|+||||+. +
T Consensus 230 ~d~~~~~~~~~a~~~ie~Ae~~~e~-G~dVlL~iDsItR~arAqrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e~ 307 (416)
T PRK09376 230 FDEPAERHVQVAEMVIEKAKRLVEH-GKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIEE 307 (416)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEEChHHHHHHHHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCCC
Confidence 5899999999999999999999998 999999999999999999999999999999 899999999999999999995 8
Q ss_pred CCccceeeeeecC
Q psy6464 80 KGSITSVQVRECP 92 (96)
Q Consensus 80 ~GSIT~i~~v~vp 92 (96)
+||||+|+|++++
T Consensus 308 ~GSlT~i~T~Lve 320 (416)
T PRK09376 308 GGSLTIIATALID 320 (416)
T ss_pred CcceEEEEEEEec
Confidence 9999999999997
No 53
>PRK06315 type III secretion system ATPase; Provisional
Probab=99.94 E-value=1.4e-27 Score=191.95 Aligned_cols=92 Identities=33% Similarity=0.555 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTK 80 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~ 80 (96)
++++|..|++.+++++++|||||++ |++||+++||+||||+|+|||++++||||+++||||++|+.|++|+||||+.++
T Consensus 229 s~q~p~~rlnp~~va~~IAE~~r~~-g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~~~ 307 (442)
T PRK06315 229 SDQSSQLRLNAAYVGTAIAEYFRDQ-GKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGASDK 307 (442)
T ss_pred CCCCHHHHhhHHHHHHHHHHHHHHc-CCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCCCC
Confidence 4899999999999999999999999 999999999999999999999999999999999999999999999999999899
Q ss_pred CccceeeeeecCC
Q psy6464 81 GSITSVQVRECPN 93 (96)
Q Consensus 81 GSIT~i~~v~vp~ 93 (96)
||||+|+||++|+
T Consensus 308 GSITai~tVl~~g 320 (442)
T PRK06315 308 GTITAFYTVLVAG 320 (442)
T ss_pred cceeeeEEEEecC
Confidence 9999999999986
No 54
>PRK12678 transcription termination factor Rho; Provisional
Probab=99.94 E-value=9.5e-27 Score=192.64 Aligned_cols=86 Identities=24% Similarity=0.353 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCC-----CCCCCCCCCcccchhHHHhhhh
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR-----IPSAVGYQPTLATDMGTMQERI 75 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge-----~p~~~gyp~~~~~~~~~l~eRa 75 (96)
+|+||..|++++|+++++||||||+ |+|||||+|||||||+|||||++++|| +|+..+|||++|+.+++++|
T Consensus 477 ~D~p~~~~~~~a~~ai~~Ae~fre~-G~dVlillDSlTR~ArAyrev~~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE-- 553 (672)
T PRK12678 477 FDRPPSDHTTVAELAIERAKRLVEL-GKDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIE-- 553 (672)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCchHHHHHHHHhhcCCCCccCCCCchhhccCccHHHHHHHhhc--
Confidence 5899999999999999999999999 999999999999999999999999999 68889999999999999998
Q ss_pred cCCCCCccceeeeeecC
Q psy6464 76 TTTTKGSITSVQVRECP 92 (96)
Q Consensus 76 g~~~~GSIT~i~~v~vp 92 (96)
++||||+|+||+|.
T Consensus 554 ---~gGSLTii~TvLVE 567 (672)
T PRK12678 554 ---NGGSLTIIATALVE 567 (672)
T ss_pred ---cCccceeeEEEEec
Confidence 49999999999998
No 55
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.94 E-value=1.7e-26 Score=184.34 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC-C
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-T 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-~ 79 (96)
.|+||..|.++++.+++.||||+++ |+||+|++||+||||+|||||++++||+|+ +||||++|+.+++|+||||+. +
T Consensus 229 ~d~p~~~~~~va~~v~e~Ae~~~~~-GkdVVLlIDEitR~arAqrei~~~~G~~~s-~G~~~~~~~~~~~~~~~a~~~~~ 306 (415)
T TIGR00767 229 FDEPASRHVQVAEMVIEKAKRLVEH-KKDVVILLDSITRLARAYNTVTPASGKVLS-GGVDANALHRPKRFFGAARNIEE 306 (415)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHc-CCCeEEEEEChhHHHHHHHHhHhhcCCCCC-CCcChhhhcccHHHHhhcCCCCC
Confidence 4789999999999999999999999 999999999999999999999999999999 999999999999999999994 8
Q ss_pred CCccceeeeeecC
Q psy6464 80 KGSITSVQVRECP 92 (96)
Q Consensus 80 ~GSIT~i~~v~vp 92 (96)
+||||+|+|++|+
T Consensus 307 ~GSiT~~~TvLve 319 (415)
T TIGR00767 307 GGSLTIIATALID 319 (415)
T ss_pred CcchhheEEEEec
Confidence 9999999999997
No 56
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.91 E-value=7.8e-25 Score=164.64 Aligned_cols=91 Identities=23% Similarity=0.319 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC-C
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-T 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~-~ 79 (96)
+|+|+..|+++++.+++.||||+++ |++|++++|+++||++|+||+++..|++| .+||||++|+.+++++||||+. +
T Consensus 77 ~~~~~~~~~~~~~~~~~~a~~~~~~-G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q~~~~Ar~~~~ 154 (249)
T cd01128 77 FDEPPERHVQVAEMVLEKAKRLVEH-GKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKRFFGAARNIEE 154 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHHHHHHhcCCCC
Confidence 5789999999999999999999998 99999999999999999999999999999 5899999999999999999995 8
Q ss_pred CCccceeeeeecCC
Q psy6464 80 KGSITSVQVRECPN 93 (96)
Q Consensus 80 ~GSIT~i~~v~vp~ 93 (96)
+||||+++|++++.
T Consensus 155 ~gsIt~l~T~~~d~ 168 (249)
T cd01128 155 GGSLTIIATALVDT 168 (249)
T ss_pred CCceEEeeeheecC
Confidence 99999999999973
No 57
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=99.91 E-value=9.5e-25 Score=174.33 Aligned_cols=92 Identities=30% Similarity=0.463 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcC--CC
Q psy6464 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--TT 79 (96)
Q Consensus 2 d~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~--~~ 79 (96)
|+|+.+|+.+|..|++.||||..+.++|||+++.|+|.||.|.||||.+.+|.|+++|||++++++++.+|||||. ++
T Consensus 217 ~dp~vEri~tPr~aLt~AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g~ 296 (463)
T COG1156 217 DDPAVERIITPRMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGR 296 (463)
T ss_pred CCCceeEecchhHHHHHHHHHhccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceeccC
Confidence 7899999999999999999999987999999999999999999999999999999999999999999999999999 57
Q ss_pred CCccceeeeeecCC
Q psy6464 80 KGSITSVQVRECPN 93 (96)
Q Consensus 80 ~GSIT~i~~v~vp~ 93 (96)
+||||.++++++|+
T Consensus 297 ~GSiTqipIlTMP~ 310 (463)
T COG1156 297 KGSITQIPILTMPG 310 (463)
T ss_pred CCceEEEEeeecCC
Confidence 99999999999997
No 58
>KOG1351|consensus
Probab=99.90 E-value=2.7e-24 Score=168.49 Aligned_cols=93 Identities=31% Similarity=0.420 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcC--CC
Q psy6464 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--TT 79 (96)
Q Consensus 2 d~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~--~~ 79 (96)
|+|..+|+..+..|++.|||+.++.+||||+++.|++.||.|.||||.+..|.|+++|||++++++++.+|||||+ ++
T Consensus 243 ndptieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrvegr 322 (489)
T KOG1351|consen 243 NDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGR 322 (489)
T ss_pred CCCchhhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhcccccC
Confidence 6899999999999999999999988999999999999999999999999999999999999999999999999999 58
Q ss_pred CCccceeeeeecCCC
Q psy6464 80 KGSITSVQVRECPNF 94 (96)
Q Consensus 80 ~GSIT~i~~v~vp~~ 94 (96)
+||||.||++++|+-
T Consensus 323 ~gsitqipiltmpnd 337 (489)
T KOG1351|consen 323 NGSITQIPILTMPND 337 (489)
T ss_pred CCceeeeeeEecCCc
Confidence 999999999999973
No 59
>KOG1352|consensus
Probab=99.87 E-value=1.6e-22 Score=162.47 Aligned_cols=91 Identities=33% Similarity=0.543 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcC----
Q psy6464 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT---- 77 (96)
Q Consensus 2 d~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~---- 77 (96)
|+|...|....|+++|++|||||+ |+||-.+.||.+|||+|.||||-.++|.|...|||+++-..++.||||||+
T Consensus 319 NMPVAAREASIYTGITlsEYfRDm-G~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcL 397 (618)
T KOG1352|consen 319 NMPVAAREASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL 397 (618)
T ss_pred CCchhhhhhhhhhcccHHHHHHhc-CcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceeec
Confidence 689999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCCccceeeeeecCC
Q psy6464 78 ---TTKGSITSVQVRECPN 93 (96)
Q Consensus 78 ---~~~GSIT~i~~v~vp~ 93 (96)
.+.||+|++++|..|+
T Consensus 398 GsP~ReGsVsIVgAVSPpG 416 (618)
T KOG1352|consen 398 GSPDREGSVSIVGAVSPPG 416 (618)
T ss_pred CCCCcCceeEEEEeecCCC
Confidence 3899999999999996
No 60
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=99.86 E-value=1.7e-22 Score=164.98 Aligned_cols=91 Identities=36% Similarity=0.542 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcC----
Q psy6464 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT---- 77 (96)
Q Consensus 2 d~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~---- 77 (96)
|+|...|..+.|+|.|+||||||+ |.||+++.||.+|||+|.||||..++|.|+.+|||+++-+.++++|||||.
T Consensus 296 nMPVAAREasIYtGiTiaEY~RDm-Gy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~ 374 (588)
T COG1155 296 NMPVAAREASIYTGITIAEYYRDM-GYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLV 374 (588)
T ss_pred cchHHHhhhhhhhhhhHHHHHHhh-hhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeec
Confidence 689999999999999999999999 999999999999999999999999999999999999999999999999997
Q ss_pred ---CCCCccceeeeeecCC
Q psy6464 78 ---TTKGSITSVQVRECPN 93 (96)
Q Consensus 78 ---~~~GSIT~i~~v~vp~ 93 (96)
.+.||+|++++|..|+
T Consensus 375 ~~~~r~GsvtV~gaVSPpG 393 (588)
T COG1155 375 SPEERFGSITVIGAVSPPG 393 (588)
T ss_pred CCCcceEEEEEecCCCCCC
Confidence 2469999999999886
No 61
>COG1158 Rho Transcription termination factor [Transcription]
Probab=99.75 E-value=1.1e-18 Score=137.74 Aligned_cols=90 Identities=22% Similarity=0.321 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcC-CC
Q psy6464 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT-TT 79 (96)
Q Consensus 1 md~p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~-~~ 79 (96)
.|+||..|++++..++..|+++.+. |+||++++||+||+|+|||-+...+|+..+ .|-.+..++..+||++.|+| ++
T Consensus 234 FDepp~~HvqVAE~viEkAKRlVE~-~kDVVILLDSITRLaRAYN~v~P~SGkvLs-GGvD~nAL~~PKrFFGAARNIEe 311 (422)
T COG1158 234 FDEPPSRHVQVAEMVIEKAKRLVEH-GKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIEE 311 (422)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHc-CCcEEEEehhHHHHHHHhcccCCCCCCeec-CCcChhhhcCchhhhhhhhcccc
Confidence 3899999999999999999999999 999999999999999999999999999999 59999999999999999999 78
Q ss_pred CCccceeeeeecC
Q psy6464 80 KGSITSVQVRECP 92 (96)
Q Consensus 80 ~GSIT~i~~v~vp 92 (96)
|||+|+|+|++|.
T Consensus 312 GGSLTIiATALVd 324 (422)
T COG1158 312 GGSLTIIATALVD 324 (422)
T ss_pred Ccchhhhhhhhhh
Confidence 9999999999874
No 62
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.25 E-value=0.18 Score=33.01 Aligned_cols=65 Identities=28% Similarity=0.479 Sum_probs=47.6
Q ss_pred HHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCCCccceeeeeecCCC
Q psy6464 17 TVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTKGSITSVQVRECPNF 94 (96)
Q Consensus 17 ~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~GSIT~i~~v~vp~~ 94 (96)
.++.++... ....++++|+++.+.+...+. ..+++..+...+.++.+++.+ ..+|.+.+...+..
T Consensus 75 ~~~~~~~~~-~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~~---~~~~vv~~~~~~~~ 139 (165)
T cd01120 75 SKAERLRER-GGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERARK---GGVTVIFTLQVPSG 139 (165)
T ss_pred HHHHHHHhC-CCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHhc---CCceEEEEEecCCc
Confidence 445677777 777889999999998876543 346677777888888888754 46788888776643
No 63
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=63.34 E-value=13 Score=25.85 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhccCCcE--EEEecCc
Q psy6464 11 VALTGLTVAEYFRDQEGQDV--LLFIDNI 37 (96)
Q Consensus 11 ~~~~~~~~AEyfrd~~G~~V--lll~Dsl 37 (96)
.+.+|..+|..+.++ |..| |+++|+.
T Consensus 76 Gg~lA~E~A~~Le~~-G~~v~~l~liD~~ 103 (229)
T PF00975_consen 76 GGILAFEMARQLEEA-GEEVSRLILIDSP 103 (229)
T ss_dssp HHHHHHHHHHHHHHT-T-SESEEEEESCS
T ss_pred cHHHHHHHHHHHHHh-hhccCceEEecCC
Confidence 467899999999999 9987 8889964
No 64
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=60.89 E-value=20 Score=25.47 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcc--cchhHHHhhhhcCCCCCccce
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL--ATDMGTMQERITTTTKGSITS 85 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~--~~~~~~l~eRag~~~~GSIT~ 85 (96)
.|..+|+.|.++ |.+|++..-+-.+...+..++....+.. -++.++ ...+.++++.+-..-+|.|..
T Consensus 8 iG~aia~~l~~~-Ga~V~~~~~~~~~~~~~~~~l~~~~~~~----~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 8 IGRAIARALAEE-GANVILTDRNEEKLADALEELAKEYGAE----VIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp HHHHHHHHHHHT-TEEEEEEESSHHHHHHHHHHHHHHTTSE----EEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred hHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHHHcCCc----eEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 578999999999 9999999888888777777776655532 255444 234455555544422255653
No 65
>PRK10037 cell division protein; Provisional
Probab=57.50 E-value=13 Score=27.25 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhccCCcEEEE-ecC
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF-IDN 36 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll-~Ds 36 (96)
++..+|-.+..+ |++||++ +|.
T Consensus 18 ~a~nLA~~La~~-G~rVLlID~D~ 40 (250)
T PRK10037 18 ITAALAWSLQML-GENVLVIDACP 40 (250)
T ss_pred HHHHHHHHHHhc-CCcEEEEeCCh
Confidence 466788888888 9999999 664
No 66
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.82 E-value=15 Score=30.52 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCC
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR 53 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge 53 (96)
++.-+|.||+.+ |+.|+++.-|+.|.| |+.+.--+..+
T Consensus 116 t~~KLA~~lkk~-~~kvllVaaD~~RpA-A~eQL~~La~q 153 (451)
T COG0541 116 TAGKLAKYLKKK-GKKVLLVAADTYRPA-AIEQLKQLAEQ 153 (451)
T ss_pred HHHHHHHHHHHc-CCceEEEecccCChH-HHHHHHHHHHH
Confidence 345689999997 999999999999988 66555554433
No 67
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=54.22 E-value=20 Score=21.44 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhc
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERIT 76 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag 76 (96)
.+.|+.+|++|... |++|-++.-+ ..+. ..+++.+...+.+.+++.|
T Consensus 8 G~ig~E~A~~l~~~-g~~vtli~~~----------------~~~~-~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 8 GFIGIELAEALAEL-GKEVTLIERS----------------DRLL-PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp SHHHHHHHHHHHHT-TSEEEEEESS----------------SSSS-TTSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh-CcEEEEEecc----------------chhh-hhcCHHHHHHHHHHHHHCC
Confidence 36899999999998 9999876322 2222 4566666666656665554
No 68
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=52.97 E-value=22 Score=22.88 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
+-.+++|+.++++ |++|.+..+.-
T Consensus 13 ~P~lala~~L~~r-Gh~V~~~~~~~ 36 (139)
T PF03033_consen 13 YPFLALARALRRR-GHEVRLATPPD 36 (139)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEETGG
T ss_pred HHHHHHHHHHhcc-CCeEEEeeccc
Confidence 4567899999999 99999877654
No 69
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=50.69 E-value=19 Score=26.42 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhccCCcEEEE-ec
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF-ID 35 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll-~D 35 (96)
+++.+|..+..+ |++||++ +|
T Consensus 18 ~~~nLA~~la~~-G~kVLliD~D 39 (270)
T PRK13185 18 TSSNLSAAFAKL-GKKVLQIGCD 39 (270)
T ss_pred HHHHHHHHHHHC-CCeEEEEecc
Confidence 466788888887 9999998 55
No 70
>KOG1434|consensus
Probab=50.50 E-value=13 Score=29.52 Aligned_cols=21 Identities=19% Similarity=0.618 Sum_probs=17.8
Q ss_pred HHHHHHHhccCCcEEEEecCch
Q psy6464 17 TVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 17 ~~AEyfrd~~G~~Vlll~Dslt 38 (96)
-+++.|.+. |+.+|+++||+.
T Consensus 201 ~L~~~~se~-g~~rlvIVDsIm 221 (335)
T KOG1434|consen 201 LLGDFLSEH-GKYRLVIVDSIM 221 (335)
T ss_pred HHHHHHhhc-CcEEEEEEecee
Confidence 466788888 999999999975
No 71
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=48.80 E-value=22 Score=25.24 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhccCCcEEEE-ec
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF-ID 35 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll-~D 35 (96)
++..+|-+|..+ |++||++ +|
T Consensus 16 ~~~nLA~~la~~-G~rvLliD~D 37 (212)
T cd02117 16 TSQNLSAALAEM-GKKVLQVGCD 37 (212)
T ss_pred HHHHHHHHHHHC-CCcEEEEeCC
Confidence 456788888888 9999998 55
No 72
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=48.29 E-value=32 Score=25.29 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchhhhhh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQA 43 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A 43 (96)
...|.++|+.+.++ |++|+++-+|-.+..+.
T Consensus 9 G~vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~ 39 (225)
T COG0569 9 GRVGRSVARELSEE-GHNVVLIDRDEERVEEF 39 (225)
T ss_pred cHHHHHHHHHHHhC-CCceEEEEcCHHHHHHH
Confidence 35788999999999 99999999998887764
No 73
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=46.79 E-value=63 Score=24.95 Aligned_cols=61 Identities=10% Similarity=0.116 Sum_probs=37.1
Q ss_pred HHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCC--CCCccceeeeeecCC
Q psy6464 20 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--TKGSITSVQVRECPN 93 (96)
Q Consensus 20 Eyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~--~~GSIT~i~~v~vp~ 93 (96)
+.+++. ||.|++++.+.. ...+...++|...-...+-..+|..-.. .+++.|.+|.++.|.
T Consensus 148 ~~L~~~-gkrvIv~y~~~~------------~~~~~w~~~~~~~~~~~ii~~L~~~~~~~~~~~~~~v~Q~~lT~~ 210 (281)
T cd08620 148 AQLRQT-GKRLIVLFGDAD------------KYDSYSDEDYATSDPQPIIDALNKMLAEGQSGYDYTVLQLQATAS 210 (281)
T ss_pred HHHHhC-CCEEEEEEcCCC------------cCCCCCCcccCCCCHHHHHHHHHhhhhccCCCCCeEEEEEEecCC
Confidence 456777 999999998711 1222222345444445555666654442 366688888887774
No 74
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=46.77 E-value=24 Score=25.86 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll 33 (96)
+++.+|..+..+ |++||++
T Consensus 16 ~~~nLA~~La~~-g~rVLli 34 (268)
T TIGR01281 16 TSSNLSVAFAKL-GKRVLQI 34 (268)
T ss_pred HHHHHHHHHHhC-CCeEEEE
Confidence 466778888888 9999998
No 75
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=44.99 E-value=28 Score=23.53 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
.+++.+|.++.++ |++|+++==|
T Consensus 14 t~a~~la~~la~~-g~~VlliD~D 36 (195)
T PF01656_consen 14 TIAANLAQALARK-GKKVLLIDLD 36 (195)
T ss_dssp HHHHHHHHHHHHT-TS-EEEEEES
T ss_pred HHHHHHHhccccc-cccccccccC
Confidence 3567788899998 9999998544
No 76
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=44.37 E-value=25 Score=21.68 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=26.4
Q ss_pred CCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccch--hHHHhhhhcC
Q psy6464 27 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD--MGTMQERITT 77 (96)
Q Consensus 27 G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~--~~~l~eRag~ 77 (96)
+...++|+|+. |+..||-..++.. +.+++++|-.
T Consensus 34 ~~~~i~lyD~~-----------------~GG~G~~~~l~~~~~~~~ll~~A~~ 69 (84)
T PF09369_consen 34 GPPRIFLYDTV-----------------PGGAGYAERLFERERFEELLRRALE 69 (84)
T ss_pred CccEEEEEECC-----------------CCchhhHhhhcChhHHHHHHHHHHH
Confidence 66778888865 5667888888888 8888888754
No 77
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=44.04 E-value=34 Score=23.51 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
-..+|.+++....+ |+.|+|.++|-
T Consensus 15 ~~~~c~L~~ka~~~-g~rv~I~~~d~ 39 (142)
T PRK05728 15 EALLCELAEKALRA-GWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence 34677888888888 99999999876
No 78
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=43.79 E-value=30 Score=23.15 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
-+++.+|..+..+ |++|+++=-|
T Consensus 15 t~a~~la~~l~~~-g~~vllvD~D 37 (179)
T cd02036 15 TTTANLGTALAQL-GYKVVLIDAD 37 (179)
T ss_pred HHHHHHHHHHHhC-CCeEEEEeCC
Confidence 3567788888888 9999998333
No 79
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=43.78 E-value=38 Score=20.11 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
..+++.|-++++. |.+|+++ |.-
T Consensus 6 ~sGl~aA~~L~~~-g~~v~v~-E~~ 28 (68)
T PF13450_consen 6 ISGLAAAYYLAKA-GYRVTVF-EKN 28 (68)
T ss_dssp HHHHHHHHHHHHT-TSEEEEE-ESS
T ss_pred HHHHHHHHHHHHC-CCcEEEE-ecC
Confidence 5788999999998 9998885 443
No 80
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=43.05 E-value=34 Score=21.12 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhccCCcEEEE
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll 33 (96)
..+..+|.+++++ |++|+++
T Consensus 15 t~~~~la~~~~~~-~~~vl~~ 34 (104)
T cd02042 15 TTAVNLAAALARR-GKRVLLI 34 (104)
T ss_pred HHHHHHHHHHHhC-CCcEEEE
Confidence 3567788889887 9999988
No 81
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=43.05 E-value=29 Score=25.98 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhh
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRF 40 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~ 40 (96)
+=++++|+.|+++ |.+|.+++++....
T Consensus 18 ~Rcl~LA~~l~~~-g~~v~f~~~~~~~~ 44 (279)
T TIGR03590 18 MRCLTLARALHAQ-GAEVAFACKPLPGD 44 (279)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCCCHH
Confidence 3468999999998 99999999986543
No 82
>PRK06197 short chain dehydrogenase; Provisional
Probab=41.90 E-value=51 Score=24.36 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHH
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 48 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reis 48 (96)
..|..+|+.|.++ |.+|+++..+..+..++..++.
T Consensus 27 gIG~~~a~~l~~~-G~~vi~~~r~~~~~~~~~~~l~ 61 (306)
T PRK06197 27 GLGYETAAALAAK-GAHVVLAVRNLDKGKAAAARIT 61 (306)
T ss_pred cHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHH
Confidence 5678899999999 9999988888777665555554
No 83
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=41.01 E-value=33 Score=25.31 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll 33 (96)
+++.+|-.+..+ |++||++
T Consensus 17 ~~~nLA~~La~~-G~rVLlI 35 (274)
T PRK13235 17 TTQNTVAGLAEM-GKKVMVV 35 (274)
T ss_pred HHHHHHHHHHHC-CCcEEEE
Confidence 456677778777 9999998
No 84
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=40.93 E-value=23 Score=25.86 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhccCCcEEEEe------cCchhhhhhhhhHHhhhCCCCCCC
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFI------DNIFRFTQAGSEVSALLGRIPSAV 58 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~------Dsltr~a~A~reisl~~ge~p~~~ 58 (96)
-+..+|+.+.++ |-+++++. +|++.++..+=..++..|=.|...
T Consensus 96 e~~~~a~~L~~~-gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~~~~LvP~Ed 145 (172)
T PF10740_consen 96 EAVALAKQLIEQ-GIPFVGVSPNKPDEEDLEDLADVHIDLKLPKPLVPTED 145 (172)
T ss_dssp HHHHHHHHHHHH-T--EEEEE-SS---TTGGG-SSS-EE----S-SEE-TT
T ss_pred HHHHHHHHHHHC-CCCEEEEEecCCCCCchhhhhhheeecccCCCcccCCC
Confidence 467899999999 99999999 778888888877777777777643
No 85
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=40.53 E-value=33 Score=28.48 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSA 49 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl 49 (96)
-.+.-|+.++.. |+.+++++|.+-||-++|.+.=+
T Consensus 91 ~i~e~a~~~~~~-gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 91 EIIEEARKNRLL-GRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred HHHHHHHHHHhc-CCceEEEEehhhhcChhhhhhhh
Confidence 345667778888 99999999999999999987544
No 86
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=40.32 E-value=34 Score=25.18 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhccCCcEEEE-ec
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF-ID 35 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll-~D 35 (96)
+++.+|..+..+ |++||++ +|
T Consensus 16 ~a~nLA~~La~~-G~~VlliD~D 37 (275)
T TIGR01287 16 TTQNIAAALAEM-GKKVMIVGCD 37 (275)
T ss_pred HHHHHHHHHHHC-CCeEEEEeCC
Confidence 467788888888 9999998 55
No 87
>KOG1210|consensus
Probab=39.96 E-value=50 Score=26.51 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcc--cchhHHHhhhh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL--ATDMGTMQERI 75 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~--~~~~~~l~eRa 75 (96)
.++.+|...+.+ |.||=++.+|-.+..+|.+++.+..+..= -.-|+.++ |..++..+|+.
T Consensus 45 lgl~la~e~~~~-ga~Vti~ar~~~kl~~a~~~l~l~~~~~~-v~~~S~d~~~Y~~v~~~~~~l 106 (331)
T KOG1210|consen 45 LGLALALECKRE-GADVTITARSGKKLLEAKAELELLTQVED-VSYKSVDVIDYDSVSKVIEEL 106 (331)
T ss_pred hhHHHHHHHHHc-cCceEEEeccHHHHHHHHhhhhhhhccce-eeEeccccccHHHHHHHHhhh
Confidence 467788888888 99999999999999999999999877651 11233343 55566777766
No 88
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.93 E-value=56 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhhh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQA 43 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A 43 (96)
..++-++++++..|..-++++||++---..
T Consensus 288 l~la~~~~l~~~~~~~pilLLDD~~seLD~ 317 (365)
T TIGR00611 288 LRLAEGELLREEGGEYPILLLDDVASELDD 317 (365)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCchhccCH
Confidence 344555688887788889999998765544
No 89
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=38.64 E-value=37 Score=25.06 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll 33 (96)
+++.+|.-+..+ |++||++
T Consensus 17 ~a~nLA~~La~~-G~rVllv 35 (273)
T PRK13232 17 TTQNLTAALSTM-GNKILLV 35 (273)
T ss_pred HHHHHHHHHHhh-CCCeEEE
Confidence 456777778877 9999999
No 90
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=37.82 E-value=41 Score=24.93 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll 33 (96)
+++.+|-.+..+ |++||++
T Consensus 17 ~a~nLA~~La~~-G~rVLli 35 (279)
T PRK13230 17 TVCNIAAALAES-GKKVLVV 35 (279)
T ss_pred HHHHHHHHHHhC-CCEEEEE
Confidence 466778888887 9999998
No 91
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=37.78 E-value=38 Score=25.67 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhccCCcEEEE-ec
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF-ID 35 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll-~D 35 (96)
+++.+|-.|..+ |++||++ +|
T Consensus 20 ~~~nLa~~la~~-g~kVLliD~D 41 (295)
T PRK13234 20 TSQNTLAALVEM-GQKILIVGCD 41 (295)
T ss_pred HHHHHHHHHHHC-CCeEEEEecc
Confidence 355667778878 9999999 44
No 92
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=37.37 E-value=1e+02 Score=25.25 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFT 41 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a 41 (96)
++..+|.+|+.+ |+.|+++.-|..|-+
T Consensus 111 taakLA~~L~~~-g~kV~lV~~D~~R~a 137 (437)
T PRK00771 111 TAAKLARYFKKK-GLKVGLVAADTYRPA 137 (437)
T ss_pred HHHHHHHHHHHc-CCeEEEecCCCCCHH
Confidence 445678889988 999999999988864
No 93
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=36.45 E-value=1.1e+02 Score=26.28 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=33.8
Q ss_pred HHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCC
Q psy6464 15 GLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRI 54 (96)
Q Consensus 15 ~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~ 54 (96)
+.++|..+... ++.+|+|..|-+.-++-++|.....++.
T Consensus 43 t~~~a~~~~~~-~~p~Lvi~~n~~~A~ql~~el~~f~p~~ 81 (655)
T TIGR00631 43 TFTMANVIAQV-NRPTLVIAHNKTLAAQLYNEFKEFFPEN 81 (655)
T ss_pred HHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 45678777776 8999999999999999999998888776
No 94
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=36.21 E-value=52 Score=23.33 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhccCCcEEEEecCc
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
.+|.++|..-.+ |+.|+|.++|-
T Consensus 17 ~~c~L~~k~~~~-G~rvlI~~~d~ 39 (144)
T COG2927 17 AACRLAEKAWRS-GWRVLIQCEDE 39 (144)
T ss_pred HHHHHHHHHHHc-CCeEEEEeCCH
Confidence 778889999999 99999999874
No 95
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=35.75 E-value=49 Score=25.71 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
|-|+++||.++++ |.+|+++-++
T Consensus 16 ~Pala~a~~l~~~-g~~v~~vg~~ 38 (352)
T PRK12446 16 TPNLAIIPYLKED-NWDISYIGSH 38 (352)
T ss_pred HHHHHHHHHHHhC-CCEEEEEECC
Confidence 6689999999998 9999999743
No 96
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.22 E-value=45 Score=24.40 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll 33 (96)
+++.+|..+..+ |++||++
T Consensus 16 ~a~nLA~~la~~-G~rvlli 34 (267)
T cd02032 16 TSSNLSVALAKR-GKKVLQI 34 (267)
T ss_pred HHHHHHHHHHHC-CCcEEEE
Confidence 467788899988 9999988
No 97
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=34.85 E-value=55 Score=22.28 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
-..+|.++|....+ |+.|+++++|-
T Consensus 15 ~~~~c~L~~k~~~~-g~rv~V~~~d~ 39 (137)
T PF04364_consen 15 ERFACRLAEKAYRQ-GQRVLVLCPDE 39 (137)
T ss_dssp HHHHHHHHHHHHHT-T--EEEE-SSH
T ss_pred HHHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 35677888888888 99999999886
No 98
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=34.72 E-value=81 Score=22.51 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhH
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEV 47 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~rei 47 (96)
-.|.++|+.|.++ |.+|+++--+-.+..++..++
T Consensus 11 gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 11 GIGFNVARELLKK-GARVVISSRNEENLEKALKEL 44 (259)
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHH
Confidence 3577899999998 999887755544443333333
No 99
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=34.52 E-value=92 Score=25.18 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=30.0
Q ss_pred HHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhC
Q psy6464 16 LTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG 52 (96)
Q Consensus 16 ~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~g 52 (96)
++-+|++++..|.+-++++||+.-.-..+|.-.++--
T Consensus 290 LAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~ 326 (363)
T COG1195 290 LAEIELLREETGEYPILLLDDVASELDDGRRAALLDT 326 (363)
T ss_pred HHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh
Confidence 3455788887799899999999999888888777644
No 100
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=34.00 E-value=37 Score=29.78 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=19.0
Q ss_pred CCcEEEEecCchhhhhhhhhHH
Q psy6464 27 GQDVLLFIDNIFRFTQAGSEVS 48 (96)
Q Consensus 27 G~~Vlll~Dsltr~a~A~reis 48 (96)
|+-+++.+||+|..-.|||+.+
T Consensus 464 ~~gyVvt~DDITdLV~AQRs~A 485 (712)
T COG5000 464 GNGYVVTFDDITDLVIAQRSAA 485 (712)
T ss_pred CCceEEEecchHHHHHHHHHHH
Confidence 6678999999999999999653
No 101
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=33.82 E-value=1.2e+02 Score=23.90 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=31.5
Q ss_pred HHHHH-HHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhH
Q psy6464 11 VALTG-LTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 69 (96)
Q Consensus 11 ~~~~~-~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~ 69 (96)
.++.- .+++|.++.. |-||.++ ||+ . -|++|- .=||-.||+.+.
T Consensus 54 ~A~~Ef~amve~L~~~-GvdV~if-ddt-g-----------~~~TPD-svFPNNWFSTh~ 98 (318)
T COG4874 54 RAMSEFNAMVEGLRQA-GVDVVIF-DDT-G-----------QGETPD-SVFPNNWFSTHE 98 (318)
T ss_pred HHHHHHHHHHHHHHhc-CceEEEe-ecC-C-----------CCCCCc-ccCCCcccccCc
Confidence 34443 3688999999 9999885 554 2 367776 478888887653
No 102
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.61 E-value=80 Score=24.31 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALL 51 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ 51 (96)
.|-++|+.|..+ |.||+++-=+-.|.-+-+.|+.-..
T Consensus 18 IG~~~A~~lA~~-g~~liLvaR~~~kL~~la~~l~~~~ 54 (265)
T COG0300 18 IGAELAKQLARR-GYNLILVARREDKLEALAKELEDKT 54 (265)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCcHHHHHHHHHHHHHhh
Confidence 466889999999 9999999988888888888877654
No 103
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=33.59 E-value=1.4e+02 Score=25.54 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=32.0
Q ss_pred HHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCC
Q psy6464 15 GLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRI 54 (96)
Q Consensus 15 ~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~ 54 (96)
+..+|..+... ++.+|++..+...-.+-++++...+++.
T Consensus 46 a~lia~l~~~~-~r~vLIVt~~~~~A~~l~~dL~~~~~~~ 84 (652)
T PRK05298 46 TFTMANVIARL-QRPTLVLAHNKTLAAQLYSEFKEFFPEN 84 (652)
T ss_pred HHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhcCCC
Confidence 34566777766 8999999999999989999998887775
No 104
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.52 E-value=62 Score=18.67 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhccCCcEEEE
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll 33 (96)
.++..+|..+.+. |++|+++
T Consensus 14 t~~~~l~~~l~~~-g~~v~~~ 33 (99)
T cd01983 14 TLAANLAAALAKR-GKRVLLI 33 (99)
T ss_pred HHHHHHHHHHHHC-CCeEEEE
Confidence 3566788888888 9999764
No 105
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=33.39 E-value=24 Score=25.97 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=11.1
Q ss_pred CCcEEEEecCchhhhhh
Q psy6464 27 GQDVLLFIDNIFRFTQA 43 (96)
Q Consensus 27 G~~Vlll~Dsltr~a~A 43 (96)
|++|++++||.||..-.
T Consensus 54 ~~~V~Ivv~D~TRp~p~ 70 (204)
T PF09861_consen 54 GKRVAIVVDDITRPTPS 70 (204)
T ss_dssp -SEEEEEEE-TTS---H
T ss_pred CCeEEEEeCCCCCCCCH
Confidence 78999999999997433
No 106
>COG4052 Uncharacterized protein related to methyl coenzyme M reductase subunit C [General function prediction only]
Probab=33.15 E-value=20 Score=27.96 Aligned_cols=42 Identities=29% Similarity=0.521 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhh-hhhHHhhh
Q psy6464 4 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQA-GSEVSALL 51 (96)
Q Consensus 4 p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A-~reisl~~ 51 (96)
|...|--.|-.+|-+|||+|-- |.+ ||+--+|+. .|+||.+.
T Consensus 80 ptLarHHlPHsaCDiaEYLRr~-GAk-----~NmIGLARG~Gr~is~l~ 122 (310)
T COG4052 80 PTLARHHLPHSACDIAEYLRRP-GAK-----TNMIGLARGMGRRISQLR 122 (310)
T ss_pred cchhhccCCCchhhHHHHHhcc-CCC-----cchhhhhhhccchhHHHH
Confidence 4556666788999999999987 765 455555554 56666554
No 107
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=32.76 E-value=60 Score=21.28 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
..+++.+|..+..+ |++|+++=-+.
T Consensus 15 t~~a~~lA~~la~~-~~~Vllid~~~ 39 (157)
T PF13614_consen 15 TTLALNLAAALARK-GKKVLLIDFDF 39 (157)
T ss_dssp HHHHHHHHHHHHHT-TT-EEEEE--S
T ss_pred HHHHHHHHHHHHhc-CCCeEEEECCC
Confidence 45788899999999 98877764444
No 108
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=32.74 E-value=52 Score=23.80 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhccCCcEEEE-ec
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF-ID 35 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll-~D 35 (96)
++..+|..+..+ |++||++ +|
T Consensus 17 ~~~nLA~~La~~-G~kVlliD~D 38 (270)
T cd02040 17 TTQNLSAALAEM-GKKVMIVGCD 38 (270)
T ss_pred HHHHHHHHHHhC-CCeEEEEEcC
Confidence 456778888887 9999998 44
No 109
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.66 E-value=56 Score=23.55 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEecC
Q psy6464 11 VALTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 11 ~~~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
+..+|.++|+++..+ |.+|.++.-.
T Consensus 28 SG~~G~~lA~~~~~~-Ga~V~li~g~ 52 (185)
T PF04127_consen 28 SGKMGAALAEEAARR-GAEVTLIHGP 52 (185)
T ss_dssp -SHHHHHHHHHHHHT-T-EEEEEE-T
T ss_pred cCHHHHHHHHHHHHC-CCEEEEEecC
Confidence 346789999999999 9999998655
No 110
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=32.57 E-value=66 Score=21.80 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
+++.+|.++... |++|+++--|+.+
T Consensus 16 ~a~~LA~~la~~-g~~vllvD~D~q~ 40 (169)
T cd02037 16 VAVNLALALAKL-GYKVGLLDADIYG 40 (169)
T ss_pred HHHHHHHHHHHc-CCcEEEEeCCCCC
Confidence 466788888888 9999999555544
No 111
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=32.19 E-value=61 Score=21.54 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
-+++.+|.++..+ |++|+++-=|
T Consensus 15 ~~~~~~a~~~~~~-~~~~~~vd~D 37 (139)
T cd02038 15 NISANLALALAKL-GKRVLLLDAD 37 (139)
T ss_pred HHHHHHHHHHHHC-CCcEEEEECC
Confidence 3578899999987 9988876434
No 112
>PRK13236 nitrogenase reductase; Reviewed
Probab=32.11 E-value=55 Score=24.82 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll 33 (96)
+++.+|--+..+ |++||++
T Consensus 22 ~a~NLA~~La~~-G~rVLli 40 (296)
T PRK13236 22 TSQNTLAAMAEM-GQRILIV 40 (296)
T ss_pred HHHHHHHHHHHC-CCcEEEE
Confidence 466777778888 9999998
No 113
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.11 E-value=99 Score=21.51 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhH
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEV 47 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~rei 47 (96)
...+..++++|.++ |.+|+++.-+..+...+..++
T Consensus 15 g~iG~~~a~~l~~~-G~~vi~~~r~~~~~~~~~~~~ 49 (253)
T PRK08217 15 QGLGRAMAEYLAQK-GAKLALIDLNQEKLEEAVAEC 49 (253)
T ss_pred chHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHH
Confidence 35678899999998 988776654444444444443
No 114
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=31.74 E-value=56 Score=22.36 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=19.3
Q ss_pred HHHHHHHHhccCCcEEEEecCchhhh
Q psy6464 16 LTVAEYFRDQEGQDVLLFIDNIFRFT 41 (96)
Q Consensus 16 ~~~AEyfrd~~G~~Vlll~Dsltr~a 41 (96)
..+.+++... ++++++++|++..+.
T Consensus 107 ~~~~~~l~~~-~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 107 ERLLEKLKKK-GKKVIIVIDEFQYLA 131 (234)
T ss_dssp HHHHHHHHHC-HCCEEEEEETGGGGG
T ss_pred HHHHHHHHhc-CCcEEEEEecHHHHh
Confidence 3445666666 777999999999888
No 115
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=31.49 E-value=67 Score=24.06 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecC
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
.+.++.+|++++.+ |++|.++-.+
T Consensus 145 G~~gle~A~~~~~~-G~~v~l~e~~ 168 (415)
T COG0446 145 GPIGLEAAEAAAKR-GKKVTLIEAA 168 (415)
T ss_pred cHHHHHHHHHHHHc-CCeEEEEEcc
Confidence 46899999999999 9998887555
No 116
>PRK09620 hypothetical protein; Provisional
Probab=30.90 E-value=61 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEe
Q psy6464 11 VALTGLTVAEYFRDQEGQDVLLFI 34 (96)
Q Consensus 11 ~~~~~~~~AEyfrd~~G~~Vlll~ 34 (96)
+.+.|..+|+++..+ |.+|.++.
T Consensus 28 SGfiGs~LA~~L~~~-Ga~V~li~ 50 (229)
T PRK09620 28 KGTIGRIIAEELISK-GAHVIYLH 50 (229)
T ss_pred cCHHHHHHHHHHHHC-CCeEEEEe
Confidence 378999999999999 99998874
No 117
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=30.89 E-value=71 Score=23.47 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEecCch
Q psy6464 11 VALTGLTVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 11 ~~~~~~~~AEyfrd~~G~~Vlll~Dslt 38 (96)
+.+.|..+++++.+. |.+|++++|+..
T Consensus 8 ~GfiG~~l~~~L~~~-g~~~v~~~~~~~ 34 (308)
T PRK11150 8 AGFIGSNIVKALNDK-GITDILVVDNLK 34 (308)
T ss_pred CcHHHHHHHHHHHhC-CCceEEEecCCC
Confidence 357889999999998 998999999864
No 118
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=30.59 E-value=1.2e+02 Score=21.24 Aligned_cols=34 Identities=18% Similarity=0.017 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSE 46 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~re 46 (96)
...|..++++|.++ |.+|+++.-+-.+..+...+
T Consensus 17 g~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 17 SGIGKEIALELARA-GAAVAIADLNQDGANAVADE 50 (262)
T ss_pred ChHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHH
Confidence 36788899999988 98888765554444333333
No 119
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=30.45 E-value=92 Score=19.45 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCch
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dslt 38 (96)
.....+++.++++ |.+|.++.-+-.
T Consensus 5 ~~~~~l~~~L~~~-G~~V~v~~~~~~ 29 (160)
T PF13579_consen 5 RYVRELARALAAR-GHEVTVVTPQPD 29 (160)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEEE---
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCCC
Confidence 4567899999999 999999874433
No 120
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=30.26 E-value=1.2e+02 Score=21.29 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
...|..++++|.++ |.+|+++.-+..+
T Consensus 14 g~iG~~la~~l~~~-g~~v~~~~r~~~~ 40 (258)
T PRK12429 14 SGIGLEIALALAKE-GAKVVIADLNDEA 40 (258)
T ss_pred chHHHHHHHHHHHC-CCeEEEEeCCHHH
Confidence 36788999999998 9998886544433
No 121
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=30.24 E-value=1.2e+02 Score=22.89 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=24.7
Q ss_pred HHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCC
Q psy6464 18 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR 53 (96)
Q Consensus 18 ~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge 53 (96)
+.+++++..+++++++.|.-|. ..+..+|...+.+
T Consensus 10 l~~~l~~~~~~~~lvv~d~~t~-~~~g~~v~~~l~~ 44 (250)
T PF13685_consen 10 LPEILSELGLKKVLVVTDENTY-KAAGEKVEESLKS 44 (250)
T ss_dssp HHHHHGGGT-SEEEEEEETTHH-HHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCcEEEEEcCCHH-HHHHHHHHHHHHH
Confidence 5688888658899999999885 4466666666543
No 122
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=30.10 E-value=64 Score=22.54 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
.++..+|..|... |++||++==|+
T Consensus 33 t~a~~LA~~la~~-G~rVllID~D~ 56 (204)
T TIGR01007 33 TTSANIAVAFAQA-GYKTLLIDGDM 56 (204)
T ss_pred HHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 4577788889988 99998874444
No 123
>PHA02518 ParA-like protein; Provisional
Probab=29.33 E-value=67 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhccCCcEEEEecC----chhhhh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDN----IFRFTQ 42 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Ds----ltr~a~ 42 (96)
++..+|-++..+ |++|+++--| ++.|..
T Consensus 17 ~a~~la~~la~~-g~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 17 VATNLASWLHAD-GHKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred HHHHHHHHHHhC-CCeEEEEeCCCCCChHHHHH
Confidence 456677888888 9999988433 555554
No 124
>PRK08251 short chain dehydrogenase; Provisional
Probab=28.88 E-value=1.2e+02 Score=21.24 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhh
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFT 41 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a 41 (96)
..|..+|+.|.++ |.+|+++..+..+..
T Consensus 13 giG~~la~~l~~~-g~~v~~~~r~~~~~~ 40 (248)
T PRK08251 13 GLGAGMAREFAAK-GRDLALCARRTDRLE 40 (248)
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHH
Confidence 4678899999998 999888765554443
No 125
>PRK07326 short chain dehydrogenase; Provisional
Probab=28.52 E-value=1.2e+02 Score=21.02 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
...|..++++|.++ |.+|+++.-+..+
T Consensus 16 g~iG~~la~~l~~~-g~~V~~~~r~~~~ 42 (237)
T PRK07326 16 KGIGFAIAEALLAE-GYKVAITARDQKE 42 (237)
T ss_pred CcHHHHHHHHHHHC-CCEEEEeeCCHHH
Confidence 35788999999998 9998876544433
No 126
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=28.18 E-value=1.3e+02 Score=19.93 Aligned_cols=30 Identities=23% Similarity=0.229 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcEEEEe--cCc
Q psy6464 7 ARARVALTGLTVAEYFRDQEGQDVLLFI--DNI 37 (96)
Q Consensus 7 ~r~~~~~~~~~~AEyfrd~~G~~Vlll~--Dsl 37 (96)
-+.+....+=.++.++|.+ |.+|..+. ||.
T Consensus 15 Gh~~~~~~~d~~~r~lr~~-G~~v~~~~~~dd~ 46 (143)
T cd00802 15 GHLRTIVTFDFLAQAYRKL-GYKVRCIALIDDA 46 (143)
T ss_pred hHHHHHHHHHHHHHHHHHc-CCCeEEEeeeCCC
Confidence 4566667777899999998 99987753 554
No 127
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=28.14 E-value=91 Score=27.82 Aligned_cols=44 Identities=32% Similarity=0.456 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gy 60 (96)
.+|-++|+++=+ +.+-++-+| ++-|.+.+. ||-+.|-|||-.||
T Consensus 536 ELAkaLA~~Lfg--~e~aliR~D-MSEy~EkHs-VSrLIGaPPGYVGy 579 (786)
T COG0542 536 ELAKALAEALFG--DEQALIRID-MSEYMEKHS-VSRLIGAPPGYVGY 579 (786)
T ss_pred HHHHHHHHHhcC--CCccceeec-hHHHHHHHH-HHHHhCCCCCCcee
Confidence 456778888876 345555554 888888887 99999999998888
No 128
>PRK07035 short chain dehydrogenase; Provisional
Probab=28.00 E-value=1.2e+02 Score=21.25 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhH
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEV 47 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~rei 47 (96)
..|..+++.|..+ |.+|+++.-+..+..+...++
T Consensus 19 gIG~~l~~~l~~~-G~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 19 GIGEAIAKLLAQQ-GAHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHH
Confidence 4678899999998 999887754544444444443
No 129
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=27.86 E-value=98 Score=20.32 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
..+..+|.+|..+ |++|+++--|.
T Consensus 14 t~a~~la~~l~~~-g~~V~~id~D~ 37 (116)
T cd02034 14 TIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred HHHHHHHHHHHHC-CCcEEEEECCc
Confidence 3466788999988 99999887666
No 130
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=27.78 E-value=69 Score=24.45 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhccCCcEEEEecC
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
++..+|..|..+ |++||++==|
T Consensus 16 ~a~nLA~~La~~-g~rVLlID~D 37 (296)
T TIGR02016 16 TTTNLSHMMAEM-GKRVLQLGCD 37 (296)
T ss_pred HHHHHHHHHHHC-CCeEEEEEec
Confidence 567788888888 9999887443
No 131
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=27.78 E-value=72 Score=23.45 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEe
Q psy6464 11 VALTGLTVAEYFRDQEGQDVLLFI 34 (96)
Q Consensus 11 ~~~~~~~~AEyfrd~~G~~Vlll~ 34 (96)
..+.|.++|++|..+ |.+|.++.
T Consensus 25 SG~iG~aLA~~L~~~-G~~V~li~ 47 (229)
T PRK06732 25 TGQLGKIIAETFLAA-GHEVTLVT 47 (229)
T ss_pred chHHHHHHHHHHHhC-CCEEEEEE
Confidence 457899999999999 99998875
No 132
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=27.71 E-value=99 Score=23.86 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p 55 (96)
.=|.++|..+..- |++|.++.|.. ...+.+......+..+
T Consensus 63 ~GA~aLa~aL~~l-G~~~~ivtd~~--~~~~~~~~~~~~~~~~ 102 (291)
T PF14336_consen 63 PGAAALARALQAL-GKEVVIVTDER--CAPVVKAAVRAAGLQG 102 (291)
T ss_pred HHHHHHHHHHHHc-CCeEEEEECHH--HHHHHHHHHHHHhhCc
Confidence 3466788888885 99999999986 3344455544445444
No 133
>PRK06483 dihydromonapterin reductase; Provisional
Probab=27.62 E-value=1.3e+02 Score=21.02 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCch
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dslt 38 (96)
-.|..+|+.|.++ |.+|+++..+-.
T Consensus 13 gIG~~ia~~l~~~-G~~V~~~~r~~~ 37 (236)
T PRK06483 13 RIGLALAWHLLAQ-GQPVIVSYRTHY 37 (236)
T ss_pred hHHHHHHHHHHHC-CCeEEEEeCCch
Confidence 4678899999998 999988755543
No 134
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.29 E-value=1.4e+02 Score=21.21 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhH
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEV 47 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~rei 47 (96)
..|..+|++|.+. |.+|+++.-+ .+..++..++
T Consensus 26 gIG~~ia~~l~~~-G~~v~~~~~~-~~~~~~~~~~ 58 (258)
T PRK06935 26 GLGQGYAVALAKA-GADIIITTHG-TNWDETRRLI 58 (258)
T ss_pred hHHHHHHHHHHHC-CCEEEEEeCC-cHHHHHHHHH
Confidence 5688999999998 9998887655 3333333333
No 135
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=27.25 E-value=1.3e+02 Score=20.88 Aligned_cols=29 Identities=14% Similarity=0.003 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchhhh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFT 41 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a 41 (96)
...|..++++|.++ |.+|.++.-+..+..
T Consensus 16 g~iG~~l~~~l~~~-g~~V~~~~r~~~~~~ 44 (251)
T PRK12826 16 RGIGRAIAVRLAAD-GAEVIVVDICGDDAA 44 (251)
T ss_pred CcHHHHHHHHHHHC-CCEEEEEeCCHHHHH
Confidence 35678899999998 998888766654433
No 136
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=27.22 E-value=1.2e+02 Score=19.20 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCch
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dslt 38 (96)
...+..++++|.++ |.+|.++.....
T Consensus 15 e~~~~~l~~~l~~~-G~~v~v~~~~~~ 40 (177)
T PF13439_consen 15 ERVVLNLARALAKR-GHEVTVVSPGVK 40 (177)
T ss_dssp HHHHHHHHHHHHHT-T-EEEEEESS-T
T ss_pred HHHHHHHHHHHHHC-CCEEEEEEcCCC
Confidence 34567899999999 999999965543
No 137
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=27.20 E-value=85 Score=22.11 Aligned_cols=26 Identities=8% Similarity=-0.070 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCch
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dslt 38 (96)
-..+|.++|....+ |++|++.++|--
T Consensus 15 ~~~acrL~~Ka~~~-G~rv~I~~~d~~ 40 (154)
T PRK06646 15 LKSILLLIEKCYYS-DLKSVILTADAD 40 (154)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEcCCHH
Confidence 34678888999998 999999997763
No 138
>PRK06194 hypothetical protein; Provisional
Probab=27.19 E-value=1.3e+02 Score=21.67 Aligned_cols=27 Identities=19% Similarity=-0.015 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
...|..+|+.|.++ |.+|+++-.+..+
T Consensus 16 ggIG~~la~~l~~~-G~~V~~~~r~~~~ 42 (287)
T PRK06194 16 SGFGLAFARIGAAL-GMKLVLADVQQDA 42 (287)
T ss_pred cHHHHHHHHHHHHC-CCEEEEEeCChHH
Confidence 35688899999998 9988776444333
No 139
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=27.03 E-value=77 Score=22.49 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhccCCcEEEEecCc
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
+++.+|-.+..+ |++||++==|.
T Consensus 18 ~a~nla~~la~~-g~~VlliD~D~ 40 (246)
T TIGR03371 18 LTANLASALKLL-GEPVLAIDLDP 40 (246)
T ss_pred HHHHHHHHHHhC-CCcEEEEeCCC
Confidence 456677777777 99999986565
No 140
>PRK08703 short chain dehydrogenase; Provisional
Probab=26.96 E-value=1.4e+02 Score=20.94 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhH
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEV 47 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~rei 47 (96)
..|..+++.|.++ |.+|+++.-+-.+..+...++
T Consensus 17 giG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 17 GLGEQVAKAYAAA-GATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred cHHHHHHHHHHHc-CCEEEEEeCChHHHHHHHHHH
Confidence 4678899999998 999887655544444333333
No 141
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=26.44 E-value=55 Score=23.27 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=17.8
Q ss_pred HHHHHHhccCCcEEEEecCchhh
Q psy6464 18 VAEYFRDQEGQDVLLFIDNIFRF 40 (96)
Q Consensus 18 ~AEyfrd~~G~~Vlll~Dsltr~ 40 (96)
..+.|....||.|+++=||++|.
T Consensus 6 ~~~cL~~lr~k~i~fiGDS~~Rq 28 (263)
T PF13839_consen 6 ARECLQRLRNKRIVFIGDSTTRQ 28 (263)
T ss_pred HHHHHHHccCCEEEEEechhhHH
Confidence 44555554489999999999995
No 142
>PRK05854 short chain dehydrogenase; Provisional
Probab=26.38 E-value=1.3e+02 Score=22.56 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHH
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 48 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reis 48 (96)
-.|.++|+.|..+ |.+|++..=+..+..++..|+.
T Consensus 25 GIG~~~a~~La~~-G~~Vil~~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 25 GLGLGLARRLAAA-GAEVILPVRNRAKGEAAVAAIR 59 (313)
T ss_pred hHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHH
Confidence 3577899999998 9999888766666555555553
No 143
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=26.34 E-value=10 Score=20.84 Aligned_cols=15 Identities=7% Similarity=0.308 Sum_probs=9.1
Q ss_pred CcEEEEecCchhhhh
Q psy6464 28 QDVLLFIDNIFRFTQ 42 (96)
Q Consensus 28 ~~Vlll~Dsltr~a~ 42 (96)
|+||+++.|-.++..
T Consensus 1 kkiLiV~Ts~~~~~~ 15 (38)
T PF13587_consen 1 KKILIVVTSHDKLGD 15 (38)
T ss_dssp SEEEEEE---SEECT
T ss_pred CeEEEEEcCcccccC
Confidence 579999988877654
No 144
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=26.23 E-value=81 Score=22.33 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhccCCcEEEEe
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFI 34 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~ 34 (96)
+++.+|..+..+ |++|+++=
T Consensus 17 ~a~~LA~~la~~-g~~VlliD 36 (251)
T TIGR01969 17 ITANLGVALAKL-GKKVLALD 36 (251)
T ss_pred HHHHHHHHHHHC-CCeEEEEe
Confidence 456678888888 99999984
No 145
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=26.15 E-value=1.4e+02 Score=21.19 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCch
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dslt 38 (96)
...|..+|++|.++ |.+|+++..+..
T Consensus 22 g~IG~~la~~l~~~-G~~V~~~~r~~~ 47 (259)
T PRK08213 22 RGLGLQIAEALGEA-GARVVLSARKAE 47 (259)
T ss_pred chHHHHHHHHHHHc-CCEEEEEeCCHH
Confidence 35788999999998 999877654433
No 146
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=26.06 E-value=80 Score=24.26 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecC
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
..+|+++|.++... |.+|+|+=.+
T Consensus 9 Gi~Gls~A~~l~~~-g~~V~vle~~ 32 (416)
T PRK00711 9 GVIGVTSAWYLAQA-GHEVTVIDRQ 32 (416)
T ss_pred cHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 46899999999998 9998886544
No 147
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=26.00 E-value=85 Score=18.85 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=16.7
Q ss_pred cEEEEecCchhhhhhhhhHHhh
Q psy6464 29 DVLLFIDNIFRFTQAGSEVSAL 50 (96)
Q Consensus 29 ~Vlll~Dsltr~a~A~reisl~ 50 (96)
..++++|++.++..........
T Consensus 79 ~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred CCEEEEECCcccCCHHHHHHHH
Confidence 4788899999998877665443
No 148
>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=25.54 E-value=42 Score=24.85 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEecCch
Q psy6464 11 VALTGLTVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 11 ~~~~~~~~AEyfrd~~G~~Vlll~Dslt 38 (96)
+......++.||.=. -.+++++.|+|-
T Consensus 70 SG~~V~~~~~fy~i~-~~~ilVvhDdLd 96 (190)
T COG0193 70 SGKAVGALASFYKIK-PEDILVVHDELD 96 (190)
T ss_pred cHHHHHHHHHHhCCC-HHHEEEEeeccC
Confidence 345566778888877 889999999973
No 149
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=25.45 E-value=1e+02 Score=20.63 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhccCCcE--EEEecCch
Q psy6464 10 RVALTGLTVAEYFRDQEGQDV--LLFIDNIF 38 (96)
Q Consensus 10 ~~~~~~~~~AEyfrd~~G~~V--lll~Dslt 38 (96)
..+..|+..|+-.... |++| ++++||=-
T Consensus 14 ~~~~~al~~A~aa~~~-gh~v~~vFf~~DgV 43 (127)
T TIGR03012 14 QAASSAYQFAQALLAK-GHEIVRVFFYQDGV 43 (127)
T ss_pred HHHHHHHHHHHHHHHC-CCcEEEEEEehHHH
Confidence 3567888888888888 9886 67777643
No 150
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=25.40 E-value=82 Score=23.12 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhccCCcEEEE
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll 33 (96)
.-.|.++|++|..+ |.+|.++
T Consensus 25 GgIG~AIA~~la~~-Ga~Vvlv 45 (227)
T TIGR02114 25 GHLGKIITETFLSA-GHEVTLV 45 (227)
T ss_pred cHHHHHHHHHHHHC-CCEEEEE
Confidence 45789999999999 9999886
No 151
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=25.14 E-value=86 Score=22.27 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
.+++.+|.++..+ |++|+++=-|
T Consensus 17 t~a~~lA~~la~~-g~~vlliD~D 39 (261)
T TIGR01968 17 TTTANLGTALARL-GKKVVLIDAD 39 (261)
T ss_pred HHHHHHHHHHHHc-CCeEEEEECC
Confidence 3567788888888 9999987333
No 152
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=25.06 E-value=1e+02 Score=20.69 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhccCCcEEEE
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll 33 (96)
.+++.++.+|+.+ |++|.++
T Consensus 13 ~va~~L~~~l~~~-g~~V~~~ 32 (166)
T TIGR00347 13 VASSALAAKLKKA-GYSVGYY 32 (166)
T ss_pred HHHHHHHHHHHHC-CCcEEEE
Confidence 4677899999999 9999886
No 153
>PRK14079 recF recombination protein F; Provisional
Probab=24.98 E-value=1.3e+02 Score=23.55 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhhh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQA 43 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A 43 (96)
..++-++.+++..|..-++++||++..-..
T Consensus 276 l~la~~~~~~~~~~~~pilLlDd~~seLD~ 305 (349)
T PRK14079 276 LRLAEHRLLWEHFGEAPVLLVDDFTAELDP 305 (349)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcccchhcCH
Confidence 344555788887677788899999855443
No 154
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=24.93 E-value=61 Score=24.05 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=22.6
Q ss_pred HHHHHHhccCCcEEEEecCchh-----hhhhhhhHHhhhCC
Q psy6464 18 VAEYFRDQEGQDVLLFIDNIFR-----FTQAGSEVSALLGR 53 (96)
Q Consensus 18 ~AEyfrd~~G~~Vlll~Dsltr-----~a~A~reisl~~ge 53 (96)
+.+++.+. ++.+++++|||=| .-+..+-|-..++-
T Consensus 163 ~~~~l~~~-~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~ 202 (325)
T PF07693_consen 163 IKKKLKES-KKRIVIIIDDLDRCSPEEIVELLEAIKLLLDF 202 (325)
T ss_pred HHHhhhcC-CceEEEEEcchhcCCcHHHHHHHHHHHHhcCC
Confidence 34444454 8899999999999 33344555554444
No 155
>PRK06196 oxidoreductase; Provisional
Probab=24.82 E-value=1.4e+02 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhh
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGS 45 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~r 45 (96)
..|..+|+.|..+ |.+|+++.-+..+..+...
T Consensus 37 gIG~~~a~~L~~~-G~~Vv~~~R~~~~~~~~~~ 68 (315)
T PRK06196 37 GLGLETTRALAQA-GAHVIVPARRPDVAREALA 68 (315)
T ss_pred hHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 5688899999998 9999887655544433333
No 156
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=24.81 E-value=1.5e+02 Score=22.45 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 11 VALTGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 11 ~~~~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
+.+.|..++++|..+ |.+|+++.++..+
T Consensus 19 ~GfIG~~l~~~L~~~-G~~V~~~~r~~~~ 46 (353)
T PLN02896 19 TGYIGSWLVKLLLQR-GYTVHATLRDPAK 46 (353)
T ss_pred CcHHHHHHHHHHHHC-CCEEEEEeCChHH
Confidence 357899999999998 9999988776543
No 157
>PRK12744 short chain dehydrogenase; Provisional
Probab=24.78 E-value=1.6e+02 Score=20.85 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
..|..+|++|.++ |.+|+++..+
T Consensus 19 gIG~~~a~~l~~~-G~~vv~i~~~ 41 (257)
T PRK12744 19 NLGGLIARDLAAQ-GAKAVAIHYN 41 (257)
T ss_pred hHHHHHHHHHHHC-CCcEEEEecC
Confidence 4678899999998 9997777544
No 158
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=24.72 E-value=1.5e+02 Score=20.97 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchhh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFRF 40 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr~ 40 (96)
...|..+|++|.++ |.+|+++.-+..+.
T Consensus 16 ~~iG~~ia~~l~~~-G~~v~~~~r~~~~~ 43 (257)
T PRK07067 16 SGIGEAVAERYLAE-GARVVIADIKPARA 43 (257)
T ss_pred chHHHHHHHHHHHc-CCEEEEEcCCHHHH
Confidence 35688999999999 99988875554443
No 159
>PRK08643 acetoin reductase; Validated
Probab=24.46 E-value=1.6e+02 Score=20.77 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
..|..++++|.++ |.+|+++.=+
T Consensus 13 giG~~la~~l~~~-G~~v~~~~r~ 35 (256)
T PRK08643 13 GIGFAIAKRLVED-GFKVAIVDYN 35 (256)
T ss_pred hHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4677889999988 9888776433
No 160
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.39 E-value=1.9e+02 Score=20.80 Aligned_cols=32 Identities=6% Similarity=0.159 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhhhhhhH
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEV 47 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~rei 47 (96)
.+.++|+.|.++ |.+|++...+ .+..+...++
T Consensus 22 IG~a~a~~la~~-G~~v~~~~r~-~~~~~~~~~l 53 (260)
T PRK06603 22 ISWAIAQLAKKH-GAELWFTYQS-EVLEKRVKPL 53 (260)
T ss_pred hHHHHHHHHHHc-CCEEEEEeCc-hHHHHHHHHH
Confidence 567899999998 9998776433 3333334444
No 161
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=24.24 E-value=1e+02 Score=22.14 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhccCCcEEEEec
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFID 35 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~D 35 (96)
.+.|++.|..++.. |.+|+++ |
T Consensus 9 G~aGl~aA~~l~~~-g~~v~li-e 30 (300)
T TIGR01292 9 GPAGLTAAIYAARA-NLKTLII-E 30 (300)
T ss_pred CHHHHHHHHHHHHC-CCCEEEE-e
Confidence 46789999999998 9998775 5
No 162
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=23.98 E-value=91 Score=22.87 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll 33 (96)
+++.+|-.+..+.|++||++
T Consensus 18 ~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 18 TTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred HHHHHHHHHHHhcCCeEEEe
Confidence 45677778876339999998
No 163
>PRK06720 hypothetical protein; Provisional
Probab=23.43 E-value=2.2e+02 Score=19.72 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHH
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 48 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reis 48 (96)
-.|..+|+.|.+. |.+|.+..-+.........|+.
T Consensus 27 GIG~aia~~l~~~-G~~V~l~~r~~~~~~~~~~~l~ 61 (169)
T PRK06720 27 GIGRNTALLLAKQ-GAKVIVTDIDQESGQATVEEIT 61 (169)
T ss_pred hHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHH
Confidence 4678899999998 9998776545444433444443
No 164
>PRK07062 short chain dehydrogenase; Provisional
Probab=23.26 E-value=1.7e+02 Score=20.72 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhH
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEV 47 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~rei 47 (96)
..|..+|+.|.++ |.+|+++.=+..+..+...++
T Consensus 19 giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~ 52 (265)
T PRK07062 19 GIGLATVELLLEA-GASVAICGRDEERLASAEARL 52 (265)
T ss_pred hHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHH
Confidence 4678899999998 999887655554444444443
No 165
>PRK12937 short chain dehydrogenase; Provisional
Probab=23.23 E-value=1.7e+02 Score=20.22 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
...|..+|++|.++ |.+|+++..+-
T Consensus 15 ~~iG~~la~~l~~~-g~~v~~~~~~~ 39 (245)
T PRK12937 15 RGIGAAIARRLAAD-GFAVAVNYAGS 39 (245)
T ss_pred chHHHHHHHHHHHC-CCEEEEecCCC
Confidence 35788899999998 99988776543
No 166
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=23.22 E-value=1.8e+02 Score=19.92 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCch
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dslt 38 (96)
...+..++++|.++ |.+|+++..+..
T Consensus 15 g~iG~~l~~~l~~~-G~~v~~~~~~~~ 40 (248)
T PRK05557 15 RGIGRAIAERLAAQ-GANVVINYASSE 40 (248)
T ss_pred chHHHHHHHHHHHC-CCEEEEEeCCch
Confidence 35788899999998 999977766543
No 167
>KOG1353|consensus
Probab=23.19 E-value=25 Score=27.93 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhccCC
Q psy6464 3 EPPGARARVALTGLTVAEYFRDQEGQ 28 (96)
Q Consensus 3 ~p~~~r~~~~~~~~~~AEyfrd~~G~ 28 (96)
+-|...+.+.|.+++++|+|.++ |+
T Consensus 89 DVpvg~~LlgrvvdAlGn~idgk-G~ 113 (340)
T KOG1353|consen 89 DVPPLKALLGRVGCALGEPIDGN-GK 113 (340)
T ss_pred ccCchHHHhhhhhhhhcCeecCC-CC
Confidence 34556778999999999999999 93
No 168
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=23.14 E-value=1.2e+02 Score=20.35 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhccCCcE--EEEecCchhhh
Q psy6464 10 RVALTGLTVAEYFRDQEGQDV--LLFIDNIFRFT 41 (96)
Q Consensus 10 ~~~~~~~~~AEyfrd~~G~~V--lll~Dsltr~a 41 (96)
..+..|+..|+-...+ |++| ++++||=.-++
T Consensus 15 ~~~~~al~~A~aa~~~-gh~v~~vFf~~DgV~~a 47 (128)
T PRK00207 15 QQASSAYQFAQALLAE-GHELVSVFFYQDGVLNA 47 (128)
T ss_pred HHHHHHHHHHHHHHhC-CCCeeEEEEehHHHHHH
Confidence 4567888888888888 8875 66677644433
No 169
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=23.10 E-value=76 Score=24.97 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=17.0
Q ss_pred HHHHHHhccCCcEEEEecCch
Q psy6464 18 VAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 18 ~AEyfrd~~G~~Vlll~Dslt 38 (96)
+-|-+|.. .+.++++||||+
T Consensus 130 l~~~Lr~~-~~kFIlFcDDLS 149 (287)
T COG2607 130 LVELLRAR-PEKFILFCDDLS 149 (287)
T ss_pred HHHHHhcC-CceEEEEecCCC
Confidence 44778888 999999999986
No 170
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=22.97 E-value=1.9e+02 Score=19.80 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
..+|..++++|.++ |.+|.++.-+..+
T Consensus 15 g~iG~~l~~~l~~~-g~~v~~~~r~~~~ 41 (246)
T PRK05653 15 RGIGRAIALRLAAD-GAKVVIYDSNEEA 41 (246)
T ss_pred cHHHHHHHHHHHHC-CCEEEEEeCChhH
Confidence 46788899999988 9998776555443
No 171
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=22.95 E-value=1.5e+02 Score=21.51 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhccCCcEEEEecCch-hhhhhhh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIF-RFTQAGS 45 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dslt-r~a~A~r 45 (96)
.+.+.|..|||. |-||++-.-+=+ .|.+|..
T Consensus 15 QG~a~AlNLrDS-G~~V~Vglr~~s~s~~~A~~ 46 (165)
T PF07991_consen 15 QGHAHALNLRDS-GVNVIVGLREGSASWEKAKA 46 (165)
T ss_dssp HHHHHHHHHHHC-C-EEEEEE-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCEEEEecCCCcCHHHHHH
Confidence 367889999999 999998777666 5655543
No 172
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=22.91 E-value=1e+02 Score=21.76 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHh-ccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRD-QEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd-~~G~~Vlll~Ds 36 (96)
.++..+|.+|.. . |++||++==|
T Consensus 51 t~a~nLA~~la~~~-g~~VLlvD~D 74 (207)
T TIGR03018 51 FTAINLAISLAQEY-DKTVLLIDAD 74 (207)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEECC
Confidence 356778888875 6 9999998333
No 173
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=22.85 E-value=1.2e+02 Score=21.68 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
.+++.+|.+|..+ |++|+++--|+.+
T Consensus 14 ~~~~~la~~~a~~-g~~~~l~~~d~~~ 39 (217)
T cd02035 14 TIAAATAVRLAEE-GKKVLLVSTDPAH 39 (217)
T ss_pred HHHHHHHHHHHHC-CCcEEEEECCCCc
Confidence 3577889999998 9999998666655
No 174
>PRK07233 hypothetical protein; Provisional
Probab=22.83 E-value=1e+02 Score=23.51 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhccCCcEEEE
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll 33 (96)
...|++.|.++..+ |++|+|+
T Consensus 8 GiaGL~aA~~L~~~-G~~v~vl 28 (434)
T PRK07233 8 GIAGLAAAYRLAKR-GHEVTVF 28 (434)
T ss_pred CHHHHHHHHHHHHC-CCcEEEE
Confidence 45789999999998 9998886
No 175
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.71 E-value=1.9e+02 Score=19.79 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCch
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dslt 38 (96)
...|..++++|.++ |.+|.++.++..
T Consensus 16 g~iG~~l~~~l~~~-g~~v~~~~~~~~ 41 (249)
T PRK12825 16 RGLGRAIALRLARA-GADVVVHYRSDE 41 (249)
T ss_pred chHHHHHHHHHHHC-CCeEEEEeCCCH
Confidence 46788999999999 999877666544
No 176
>PRK14974 cell division protein FtsY; Provisional
Probab=22.64 E-value=3e+02 Score=21.71 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=24.8
Q ss_pred HHHHHHHHhccCCcEEEEecCchhhhhh--hhhHHhhhCCC
Q psy6464 16 LTVAEYFRDQEGQDVLLFIDNIFRFTQA--GSEVSALLGRI 54 (96)
Q Consensus 16 ~~~AEyfrd~~G~~Vlll~Dsltr~a~A--~reisl~~ge~ 54 (96)
-.+|.+++++ |+.|+++.-|..|-+.. .+..+..+|-+
T Consensus 158 akLA~~l~~~-g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 158 AKLAYYLKKN-GFSVVIAAGDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred HHHHHHHHHc-CCeEEEecCCcCcHHHHHHHHHHHHHcCCc
Confidence 3477889888 99999988787775432 23344445543
No 177
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=22.48 E-value=1.9e+02 Score=20.42 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
..|..+|++|.++ |.+|+++.-+.
T Consensus 11 ~iG~~la~~l~~~-G~~V~~~~r~~ 34 (248)
T PRK10538 11 GFGECITRRFIQQ-GHKVIATGRRQ 34 (248)
T ss_pred hHHHHHHHHHHHC-CCEEEEEECCH
Confidence 5688899999998 99988764443
No 178
>PLN02268 probable polyamine oxidase
Probab=22.34 E-value=78 Score=24.71 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhccCCcEEEE
Q psy6464 11 VALTGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 11 ~~~~~~~~AEyfrd~~G~~Vlll 33 (96)
+..+|++.|.++.+. |++|+++
T Consensus 8 aGisGL~aA~~L~~~-g~~v~vl 29 (435)
T PLN02268 8 GGIAGIAAARALHDA-SFKVTLL 29 (435)
T ss_pred CCHHHHHHHHHHHhC-CCeEEEE
Confidence 346889999999998 9998887
No 179
>PRK05875 short chain dehydrogenase; Provisional
Probab=22.32 E-value=1.9e+02 Score=20.64 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchhh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFRF 40 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr~ 40 (96)
...+..++++|.++ |.+|.++.=+..+.
T Consensus 17 g~IG~~la~~l~~~-G~~V~~~~r~~~~~ 44 (276)
T PRK05875 17 SGIGKGVAAGLVAA-GAAVMIVGRNPDKL 44 (276)
T ss_pred cHHHHHHHHHHHHC-CCeEEEEeCCHHHH
Confidence 35788999999998 99988765444433
No 180
>PRK12743 oxidoreductase; Provisional
Probab=22.30 E-value=1.8e+02 Score=20.62 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
..|..+|+.|.++ |.+|+++.++
T Consensus 13 giG~~~a~~l~~~-G~~V~~~~~~ 35 (256)
T PRK12743 13 GIGKACALLLAQQ-GFDIGITWHS 35 (256)
T ss_pred hHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4678899999998 9999877553
No 181
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=22.22 E-value=1.1e+02 Score=23.68 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhccCCcEEEE
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll 33 (96)
..+|++.|-++.+. |++|+++
T Consensus 10 G~~G~~~A~~La~~-g~~V~vl 30 (410)
T PRK12409 10 GITGVTTAYALAQR-GYQVTVF 30 (410)
T ss_pred CHHHHHHHHHHHHC-CCeEEEE
Confidence 46789999999998 9999776
No 182
>PRK05867 short chain dehydrogenase; Provisional
Probab=22.14 E-value=1.8e+02 Score=20.56 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
-.|.++|+.|.++ |.+|++..-+.
T Consensus 20 gIG~~ia~~l~~~-G~~V~~~~r~~ 43 (253)
T PRK05867 20 GIGKRVALAYVEA-GAQVAIAARHL 43 (253)
T ss_pred hHHHHHHHHHHHC-CCEEEEEcCCH
Confidence 4678899999998 99887764443
No 183
>PRK08339 short chain dehydrogenase; Provisional
Probab=22.11 E-value=1.8e+02 Score=20.98 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
-.|.++|+.|.++ |.+|++..=+-.+
T Consensus 19 gIG~aia~~l~~~-G~~V~~~~r~~~~ 44 (263)
T PRK08339 19 GIGFGVARVLARA-GADVILLSRNEEN 44 (263)
T ss_pred cHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence 3577899999998 9988776434333
No 184
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.06 E-value=2.1e+02 Score=20.86 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhccCCcEEEEe
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFI 34 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~ 34 (96)
.|.++|+.|.++ |.+|++..
T Consensus 24 IG~aia~~la~~-G~~V~l~~ 43 (272)
T PRK08159 24 IAWGIAKACRAA-GAELAFTY 43 (272)
T ss_pred HHHHHHHHHHHC-CCEEEEEc
Confidence 578899999999 99987653
No 185
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.96 E-value=1.9e+02 Score=20.14 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhccCCcEEEEec
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFID 35 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~D 35 (96)
..|..++++|.++ |.+|+++++
T Consensus 15 ~iG~~~a~~l~~~-g~~v~~~~~ 36 (250)
T PRK08063 15 GIGKAIALRLAEE-GYDIAVNYA 36 (250)
T ss_pred hHHHHHHHHHHHC-CCEEEEEcC
Confidence 5688899999998 999877544
No 186
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=21.83 E-value=1.4e+02 Score=18.96 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q psy6464 14 TGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll 33 (96)
++..+|..|....|++|+++
T Consensus 16 ~~~~la~~~~~~~~~~~~l~ 35 (106)
T cd03111 16 LAANLAVALAKEAGRRVLLV 35 (106)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 46677777876448888877
No 187
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.71 E-value=2.9e+02 Score=20.22 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccc--hhHHHhhhhc
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLAT--DMGTMQERIT 76 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~--~~~~l~eRag 76 (96)
.|.++|+.|..+ |.+|++..-+ .+..+...++....+.. ..++.++.. .+.++++++.
T Consensus 19 IG~aiA~~la~~-G~~Vil~~r~-~~~~~~~~~~~~~~~~~---~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 19 IAYGIAKACFEQ-GAELAFTYLN-EALKKRVEPIAQELGSD---YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred HHHHHHHHHHHC-CCEEEEEecC-HHHHHHHHHHHHhcCCc---eEEEecCCCHHHHHHHHHHHH
Confidence 577899999998 9998875333 22223334443333321 345555533 3455555553
No 188
>PRK06172 short chain dehydrogenase; Provisional
Probab=21.69 E-value=1.9e+02 Score=20.31 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
..|..+|++|.++ |.+|+++.-+-.+
T Consensus 18 ~iG~~ia~~l~~~-G~~v~~~~r~~~~ 43 (253)
T PRK06172 18 GIGRATALAFARE-GAKVVVADRDAAG 43 (253)
T ss_pred hHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence 4677889999988 9988877544433
No 189
>COG1478 GTP and metal dependent enzyme involved F420 coenzyme biosynthesis (catalyzes addition of two l-glutamates to F420 precursor) [Coenzyme transport and metabolism]
Probab=21.62 E-value=1.2e+02 Score=23.62 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhccCCcEEE-EecCchh
Q psy6464 14 TGLTVAEYFRDQEGQDVLL-FIDNIFR 39 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vll-l~Dsltr 39 (96)
.|-++-++++...|++|=+ |-||-+|
T Consensus 130 Sa~~i~~~L~~~~g~~vgVIItDt~gr 156 (257)
T COG1478 130 SAETIRERLRELLGVKVGVIITDTHGR 156 (257)
T ss_pred HHHHHHHHHHHHhCCceEEEEeCCCCC
Confidence 4567889999988999854 4566544
No 190
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=21.53 E-value=53 Score=27.55 Aligned_cols=15 Identities=47% Similarity=0.556 Sum_probs=12.5
Q ss_pred CCcEEEEecCchhhh
Q psy6464 27 GQDVLLFIDNIFRFT 41 (96)
Q Consensus 27 G~~Vlll~Dsltr~a 41 (96)
||+|+++-||+-|=.
T Consensus 348 GKrVvlVDDSIVRGT 362 (470)
T COG0034 348 GKRVVLVDDSIVRGT 362 (470)
T ss_pred CCeEEEEccccccCc
Confidence 999999999976643
No 191
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=21.49 E-value=1.3e+02 Score=22.19 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
.+.|..++++|.++ |.+|..+.+|..+
T Consensus 15 G~iG~~l~~~L~~~-g~~V~~~~r~~~~ 41 (322)
T PLN02986 15 GYIASWIVKLLLLR-GYTVKATVRDLTD 41 (322)
T ss_pred cHHHHHHHHHHHHC-CCEEEEEECCCcc
Confidence 57888999999998 9999988888764
No 192
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.46 E-value=1.3e+02 Score=19.16 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=18.5
Q ss_pred HHHHHHHHHhccCCcEEEEecCc
Q psy6464 15 GLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 15 ~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
.+..+++.+++ |.+|+.+.|+-
T Consensus 63 ~~~~~~~a~~~-g~~vi~iT~~~ 84 (128)
T cd05014 63 LLNLLPHLKRR-GAPIIAITGNP 84 (128)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCC
Confidence 45678899999 99999999974
No 193
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=21.42 E-value=92 Score=24.54 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhccCC-cEEEE
Q psy6464 8 RARVALTGLTVAEYFRDQEGQ-DVLLF 33 (96)
Q Consensus 8 r~~~~~~~~~~AEyfrd~~G~-~Vlll 33 (96)
|-|+.+.|=.+|+||++. |+ +|.+-
T Consensus 254 qHRSV~iae~La~~l~~~-~~~~v~v~ 279 (286)
T COG1660 254 QHRSVYIAEQLAEYLRAR-GKYNVQVR 279 (286)
T ss_pred ccchHHHHHHHHHHHHhc-cCceEEEe
Confidence 457889999999999998 77 78764
No 194
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=21.40 E-value=2e+02 Score=19.97 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
..|..+|+.|.++ |.+|+++.++
T Consensus 9 giG~~~a~~l~~~-G~~v~~~~~~ 31 (239)
T TIGR01831 9 GIGRAIANRLAAD-GFEICVHYHS 31 (239)
T ss_pred hHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4678899999998 9998776554
No 195
>PRK07063 short chain dehydrogenase; Provisional
Probab=21.39 E-value=2e+02 Score=20.36 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhccCCcEEEEe
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFI 34 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~ 34 (96)
..|..+|+.|.++ |.+|+++.
T Consensus 18 gIG~~~a~~l~~~-G~~vv~~~ 38 (260)
T PRK07063 18 GIGAAIARAFARE-GAAVALAD 38 (260)
T ss_pred hHHHHHHHHHHHC-CCEEEEEe
Confidence 4678899999998 99987753
No 196
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=21.26 E-value=53 Score=27.20 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.5
Q ss_pred CCcEEEEecCchhhhh
Q psy6464 27 GQDVLLFIDNIFRFTQ 42 (96)
Q Consensus 27 G~~Vlll~Dsltr~a~ 42 (96)
||+|+|+=|++||=+-
T Consensus 348 gk~VlLVDDvittGtT 363 (471)
T PRK06781 348 GKRVVMIDDSIVRGTT 363 (471)
T ss_pred CceEEEEeceeccchH
Confidence 9999999999887553
No 197
>PRK08017 oxidoreductase; Provisional
Probab=21.14 E-value=1.8e+02 Score=20.42 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhccCCcEEEEecCchhh
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFRF 40 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~Dsltr~ 40 (96)
...|..++++|.++ |.+|+++..+..+.
T Consensus 12 g~IG~~la~~l~~~-g~~v~~~~r~~~~~ 39 (256)
T PRK08017 12 SGIGLEAALELKRR-GYRVLAACRKPDDV 39 (256)
T ss_pred ChHHHHHHHHHHHC-CCEEEEEeCCHHHh
Confidence 35788999999998 99988776555443
No 198
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=21.06 E-value=1.1e+02 Score=23.19 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhccCCcEEEEe
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFI 34 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~ 34 (96)
+++.+|..+..+ |+.||++=
T Consensus 16 ta~nLA~~La~~-G~rVLlID 35 (290)
T CHL00072 16 TSCNISIALARR-GKKVLQIG 35 (290)
T ss_pred HHHHHHHHHHHC-CCeEEEEe
Confidence 466778888888 99999873
No 199
>CHL00175 minD septum-site determining protein; Validated
Probab=21.01 E-value=1.1e+02 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhccCCcEEEE
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLF 33 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll 33 (96)
.++..+|.++..+ |++|+++
T Consensus 31 t~a~nLA~~La~~-g~~vlli 50 (281)
T CHL00175 31 TTTANLGMSIARL-GYRVALI 50 (281)
T ss_pred HHHHHHHHHHHhC-CCeEEEE
Confidence 3466777788888 9999988
No 200
>PRK07831 short chain dehydrogenase; Provisional
Probab=20.91 E-value=2.4e+02 Score=20.02 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhhhhh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGS 45 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~r 45 (96)
.|..+++.|.++ |.+|++..-+..+..+...
T Consensus 30 IG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~ 60 (262)
T PRK07831 30 IGSATARRALEE-GARVVISDIHERRLGETAD 60 (262)
T ss_pred HHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Confidence 678899999998 9997765433333333333
No 201
>PRK06139 short chain dehydrogenase; Provisional
Probab=20.89 E-value=1.9e+02 Score=22.16 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhH
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEV 47 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~rei 47 (96)
-.|..+|+.|.++ |.+|+++.-+-.+..+...|+
T Consensus 18 GIG~aia~~la~~-G~~Vvl~~R~~~~l~~~~~~~ 51 (330)
T PRK06139 18 GIGQATAEAFARR-GARLVLAARDEEALQAVAEEC 51 (330)
T ss_pred HHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHH
Confidence 4677899999998 999887755554444433333
No 202
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=20.70 E-value=90 Score=26.91 Aligned_cols=77 Identities=6% Similarity=-0.047 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCCCc
Q psy6464 4 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTKGS 82 (96)
Q Consensus 4 p~~~r~~~~~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~GS 82 (96)
+-.+...+-++.+.+++++++- ++|+=+-++.+.+++...+|..--+..-+..-.++...-..+++.+++... +.|.
T Consensus 294 TSnMPVAAREasIYtGiTiaEY-~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYE-RaG~ 370 (588)
T COG1155 294 TSNMPVAAREASIYTGITIAEY-YRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYE-RAGR 370 (588)
T ss_pred CccchHHHhhhhhhhhhhHHHH-HHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHH-hcCe
Confidence 3456778889999999999999 999999999999999999998777777777677777777777777776654 4443
No 203
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=20.66 E-value=2.1e+02 Score=20.20 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhccCCcEEEEe
Q psy6464 12 ALTGLTVAEYFRDQEGQDVLLFI 34 (96)
Q Consensus 12 ~~~~~~~AEyfrd~~G~~Vlll~ 34 (96)
...|..+|++|.++ |.+|+++.
T Consensus 20 g~iG~~ia~~l~~~-G~~V~~~~ 41 (255)
T PRK07523 20 QGIGYALAEGLAQA-GAEVILNG 41 (255)
T ss_pred chHHHHHHHHHHHc-CCEEEEEe
Confidence 46788999999998 99987753
No 204
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=20.57 E-value=2e+02 Score=20.23 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
-.|..+|++|.++ |.+|++..-+
T Consensus 20 giG~~ia~~L~~~-G~~vvl~~r~ 42 (254)
T PRK08085 20 GIGFLLATGLAEY-GAEIIINDIT 42 (254)
T ss_pred hHHHHHHHHHHHc-CCEEEEEcCC
Confidence 4678899999998 9888775433
No 205
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.52 E-value=1.9e+02 Score=20.68 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhccCCcEEEEecC
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
.|.++|+.|..+ |.+|++...+
T Consensus 21 IG~a~a~~la~~-G~~Vi~~~r~ 42 (252)
T PRK06079 21 IAWGCAQAIKDQ-GATVIYTYQN 42 (252)
T ss_pred hHHHHHHHHHHC-CCEEEEecCc
Confidence 577899999998 9998876544
No 206
>PRK07814 short chain dehydrogenase; Provisional
Probab=20.52 E-value=2.1e+02 Score=20.46 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCc
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNI 37 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsl 37 (96)
..|..++++|.++ |.+|+++.-+.
T Consensus 21 gIG~~~a~~l~~~-G~~Vi~~~r~~ 44 (263)
T PRK07814 21 GLGAAIALAFAEA-GADVLIAARTE 44 (263)
T ss_pred hHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 5778899999998 99987765443
No 207
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=20.42 E-value=1.2e+02 Score=22.26 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchh
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFR 39 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr 39 (96)
.+++.+|..+... |++||+|==|+.+
T Consensus 119 t~a~nLA~~la~~-g~~VllID~D~~~ 144 (274)
T TIGR03029 119 YIAANLAIVFSQL-GEKTLLIDANLRD 144 (274)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCCCCC
Confidence 3566778888887 9999988445433
No 208
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.35 E-value=1.3e+02 Score=23.78 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhhh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQ 42 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a~ 42 (96)
-|..+|+.+++- |.+|.+|.||.-++..
T Consensus 158 eG~~~ak~L~~~-gI~~~~I~Dsa~~~~~ 185 (301)
T COG1184 158 EGRIMAKELRQS-GIPVTVIVDSAVGAFM 185 (301)
T ss_pred hHHHHHHHHHHc-CCceEEEechHHHHHH
Confidence 378899999999 9999999999866654
No 209
>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3.1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....
Probab=20.33 E-value=65 Score=23.15 Aligned_cols=24 Identities=8% Similarity=0.300 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhccCCcEEEEecCch
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIF 38 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dslt 38 (96)
....++++|.-+ -.+++++.||+.
T Consensus 70 ~V~~~~~~~~i~-~~~ilVihDdld 93 (184)
T PF01195_consen 70 AVKKILSFYKIP-PENILVIHDDLD 93 (184)
T ss_dssp HHHHHHHHTT---GGGEEEEEEETT
T ss_pred hHHHHHHHhCCC-cceEEEEEeccC
Confidence 344455666655 578999999974
No 210
>PF13514 AAA_27: AAA domain
Probab=20.33 E-value=1.4e+02 Score=27.09 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=44.3
Q ss_pred HHHHH--HHHHHHHhccCCcEEEEecCchhhhhhhh--hHHhhhCCCCCCCCCCCcccchhHHHhhhhcCCCCCccce
Q psy6464 12 ALTGL--TVAEYFRDQEGQDVLLFIDNIFRFTQAGS--EVSALLGRIPSAVGYQPTLATDMGTMQERITTTTKGSITS 85 (96)
Q Consensus 12 ~~~~~--~~AEyfrd~~G~~Vlll~Dsltr~a~A~r--eisl~~ge~p~~~gyp~~~~~~~~~l~eRag~~~~GSIT~ 85 (96)
.|+++ +++|.+... +..+-||+||++=.-...| .+--++.+. + +.++--+||.+..+++-+...-++++.+
T Consensus 1034 LYLALRLA~~e~~~~~-~~~lP~IlDD~fvnfDd~R~~~~l~~L~~l-s-~~~QVI~FTch~~l~~~a~~~~~~~v~v 1108 (1111)
T PF13514_consen 1034 LYLALRLALAELLAEQ-GEPLPFILDDIFVNFDDERARAALELLAEL-S-RRRQVIYFTCHEHLVELAREVFGDRVNV 1108 (1111)
T ss_pred HHHHHHHHHHHHHHhC-CCCCcEEeeCCccccCHHHHHHHHHHHHHh-c-cCCeEEEEeccHHHHHHHHHhcCCCCce
Confidence 35565 455777677 8889899999753322211 111122222 1 2478899999999999888754555544
No 211
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=20.32 E-value=55 Score=27.19 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=14.7
Q ss_pred CCcEEEEecCchhhhhhh
Q psy6464 27 GQDVLLFIDNIFRFTQAG 44 (96)
Q Consensus 27 G~~Vlll~Dsltr~a~A~ 44 (96)
||+|+|+=|++||=+-..
T Consensus 348 gk~VlLVDDsittGtTl~ 365 (475)
T PRK07631 348 GKRVVMVDDSIVRGTTSR 365 (475)
T ss_pred CceEEEEeeeeccHHHHH
Confidence 999999999998865443
No 212
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=20.31 E-value=59 Score=26.98 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.2
Q ss_pred CCcEEEEecCchhhhh
Q psy6464 27 GQDVLLFIDNIFRFTQ 42 (96)
Q Consensus 27 G~~Vlll~Dsltr~a~ 42 (96)
||+|||+=|++||=+-
T Consensus 356 gk~VlLVDDsittGtT 371 (474)
T PRK06388 356 GKRIVLVDDSIVRGNT 371 (474)
T ss_pred CceEEEEeCeECcHHH
Confidence 8999999999887553
No 213
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=20.26 E-value=1.3e+02 Score=24.07 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhccCCcEEEEe
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFI 34 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~ 34 (96)
+++.+|.++..+ |++||+|=
T Consensus 123 ta~nLA~~LA~~-G~rVLlID 142 (387)
T PHA02519 123 SAVHTAQWLALQ-GHRVLLIE 142 (387)
T ss_pred HHHHHHHHHHhC-CCcEEEEe
Confidence 456778888888 99999984
No 214
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=20.22 E-value=55 Score=26.87 Aligned_cols=15 Identities=47% Similarity=0.556 Sum_probs=13.0
Q ss_pred CCcEEEEecCchhhh
Q psy6464 27 GQDVLLFIDNIFRFT 41 (96)
Q Consensus 27 G~~Vlll~Dsltr~a 41 (96)
||+|+|+=|++|+=+
T Consensus 334 gk~VlLVDD~IttGt 348 (442)
T PRK08341 334 GKRVVLVDDSIVRGT 348 (442)
T ss_pred CCEEEEEeeeeccHH
Confidence 899999999988754
No 215
>PRK06125 short chain dehydrogenase; Provisional
Probab=20.14 E-value=3.3e+02 Score=19.26 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccCCcEEEEecCchhhhhhhhhHH
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 48 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Dsltr~a~A~reis 48 (96)
-.+..+|+.|.++ |.+|+++.=+..+..+...++.
T Consensus 18 giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~ 52 (259)
T PRK06125 18 GIGAAAAEAFAAE-GCHLHLVARDADALEALAADLR 52 (259)
T ss_pred hHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHH
Confidence 4677899999998 9988876544444433344443
No 216
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=20.06 E-value=2.1e+02 Score=20.25 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhccCCcEEEEecC
Q psy6464 13 LTGLTVAEYFRDQEGQDVLLFIDN 36 (96)
Q Consensus 13 ~~~~~~AEyfrd~~G~~Vlll~Ds 36 (96)
..+..+|+.|.++ |.+|++...+
T Consensus 18 gIG~~ia~~l~~~-G~~vvi~~~~ 40 (261)
T PRK08936 18 GLGRAMAVRFGKE-KAKVVINYRS 40 (261)
T ss_pred hHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4678899999998 9888776554
No 217
>KOG2754|consensus
Probab=20.06 E-value=1.3e+02 Score=24.93 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCcEEEEecCchhhhhhhhhHHhhhCCCCCCCC
Q psy6464 17 TVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVG 59 (96)
Q Consensus 17 ~~AEyfrd~~G~~Vlll~Dsltr~a~A~reisl~~ge~p~~~g 59 (96)
++++ |.|. |.|||+.-++ ....+.||++.-.|=-+..+|
T Consensus 94 ~l~~-Fvd~-gGnvlv~ass--~~~d~iRe~~~E~g~~~~e~~ 132 (443)
T KOG2754|consen 94 SLAK-FVDS-GGNVLVAASS--AIGDAIREFASECGIEFDEEG 132 (443)
T ss_pred HHHH-HHhC-CCcEEEEcCC--cccHHHHHHHHHhCcccCccc
Confidence 3444 6777 9999999998 888999999999888887766
No 218
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=20.03 E-value=97 Score=24.89 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEecCchh-hhhhhhhHHhhhCCCCCCCCCCCcccc--hhHHHhhh
Q psy6464 11 VALTGLTVAEYFRDQEGQDVLLFIDNIFR-FTQAGSEVSALLGRIPSAVGYQPTLAT--DMGTMQER 74 (96)
Q Consensus 11 ~~~~~~~~AEyfrd~~G~~Vlll~Dsltr-~a~A~reisl~~ge~p~~~gyp~~~~~--~~~~l~eR 74 (96)
+.|.+.-.+..+.+. |.+|++ +|+|+. +..+ +..-+ .+-|.+++.. .+.++++.
T Consensus 9 AGYIGSHtv~~Ll~~-G~~vvV-~DNL~~g~~~~-----v~~~~---~~f~~gDi~D~~~L~~vf~~ 65 (329)
T COG1087 9 AGYIGSHTVRQLLKT-GHEVVV-LDNLSNGHKIA-----LLKLQ---FKFYEGDLLDRALLTAVFEE 65 (329)
T ss_pred cchhHHHHHHHHHHC-CCeEEE-EecCCCCCHHH-----hhhcc---CceEEeccccHHHHHHHHHh
Confidence 457788788888888 999987 588854 2222 22111 3466666654 44455543
No 219
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=20.02 E-value=2.9e+02 Score=20.82 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhccCCcEEEEecCchhhh
Q psy6464 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFT 41 (96)
Q Consensus 14 ~~~~~AEyfrd~~G~~Vlll~Dsltr~a 41 (96)
++..+|.+++.+ |+.|+++--|+.|-+
T Consensus 88 t~akLA~~l~~~-g~~V~li~~D~~r~~ 114 (272)
T TIGR00064 88 TIAKLANKLKKQ-GKSVLLAAGDTFRAA 114 (272)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCCCCHH
Confidence 355677888888 999999887876654
Done!