RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6464
(96 letters)
>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 222 bits (569), Expect = 6e-73
Identities = 78/87 (89%), Positives = 83/87 (95%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
MNEPPGAR RVALTGLT+AEYFRD EGQDVLLFIDNIFRFTQAGSEVSALLGR+PSAVGY
Sbjct: 211 MNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGY 270
Query: 61 QPTLATDMGTMQERITTTTKGSITSVQ 87
QPTLAT+MG +QERIT+T KGSITSVQ
Sbjct: 271 QPTLATEMGQLQERITSTKKGSITSVQ 297
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit,
nucleotide-binding domain. The F-ATPase is found in
bacterial plasma membranes, mitochondrial inner
membranes and in chloroplast thylakoid membranes. It has
also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to drive ATP synthesis and
hydrolyzes ATP to build the proton gradient. The
extrinisic membrane domain, F1, is composed of alpha,
beta, gamma, delta and epsilon subunits with a
stoichiometry of 3:3:1:1:1. The beta subunit of ATP
synthase is catalytic.
Length = 274
Score = 206 bits (526), Expect = 6e-69
Identities = 79/87 (90%), Positives = 85/87 (97%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
MNEPPGARARVALTGLT+AEYFRD+EGQDVLLFIDNIFRFTQAGSEVSALLGR+PSAVGY
Sbjct: 136 MNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGY 195
Query: 61 QPTLATDMGTMQERITTTTKGSITSVQ 87
QPTLAT+MG +QERIT+T KGSITSVQ
Sbjct: 196 QPTLATEMGALQERITSTKKGSITSVQ 222
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 208 bits (532), Expect = 2e-67
Identities = 78/87 (89%), Positives = 84/87 (96%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
MNEPPGAR RVALTGLT+AEYFRD+EGQDVLLFIDNIFRFTQAGSEVSALLGR+PSAVGY
Sbjct: 214 MNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGY 273
Query: 61 QPTLATDMGTMQERITTTTKGSITSVQ 87
QPTLAT+MG +QERIT+T KGSITSVQ
Sbjct: 274 QPTLATEMGQLQERITSTKKGSITSVQ 300
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 189 bits (483), Expect = 3e-60
Identities = 76/87 (87%), Positives = 83/87 (95%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
MNEPPGAR RVALTGLT+AEYFRD++GQDVLLFIDNIFRFTQAGSEVSALLGR+PSAVGY
Sbjct: 210 MNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGY 269
Query: 61 QPTLATDMGTMQERITTTTKGSITSVQ 87
QPTLAT+MG +QERIT+T GSITSVQ
Sbjct: 270 QPTLATEMGELQERITSTKTGSITSVQ 296
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit.
Length = 494
Score = 187 bits (478), Expect = 3e-59
Identities = 70/87 (80%), Positives = 79/87 (90%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
MNEPPGAR RV LT LT+AEYFRD QDVLLFIDNIFRF QAGSEVSALLGR+PSAVGY
Sbjct: 235 MNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGY 294
Query: 61 QPTLATDMGTMQERITTTTKGSITSVQ 87
QPTL+T+MG++QERIT+T +GSITS+Q
Sbjct: 295 QPTLSTEMGSLQERITSTKEGSITSIQ 321
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 180 bits (458), Expect = 1e-56
Identities = 65/87 (74%), Positives = 75/87 (86%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
MNEPPGAR RV LTGLT+AEY RD+E +DVLLFIDNIFRF QAGSEVS LLGR+PS VGY
Sbjct: 210 MNEPPGARMRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGY 269
Query: 61 QPTLATDMGTMQERITTTTKGSITSVQ 87
QPTLA+++ +QERI +T GSITS+Q
Sbjct: 270 QPTLASEVAELQERIASTKNGSITSIQ 296
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 143 bits (361), Expect = 2e-42
Identities = 61/87 (70%), Positives = 72/87 (82%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
MNEPPGAR RV T LT+AEYFRD E QDVLL IDNIFRF QAGSEVS LLG++PS +GY
Sbjct: 205 MNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGY 264
Query: 61 QPTLATDMGTMQERITTTTKGSITSVQ 87
QPTL T++ ++ERI TT+ G+ITS+Q
Sbjct: 265 QPTLGTELAELEERIATTSDGAITSIQ 291
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 107 bits (271), Expect = 5e-31
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
+EPP R T LT+AEYFRDQ G+DVLL +D++ RF +A E+S LLG P GY
Sbjct: 80 SDEPPAERYLAPYTALTIAEYFRDQ-GKDVLLLLDSLTRFARALREISLLLGEPPGREGY 138
Query: 61 QPTLATDMGTMQERIT-TTTKGSITSVQV 88
+L +D+ + ER GSIT++
Sbjct: 139 PGSLFSDLARLLERAGKVEGGGSITALPT 167
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 72.7 bits (179), Expect = 1e-16
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 3 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 62
E P R + A T +AEYFRDQ G+DVLL +D++ RF A E+ G P A GY P
Sbjct: 206 ESPLMRRQAAYTATAIAEYFRDQ-GKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTP 264
Query: 63 TLATDMGTMQER--ITTTTKGSITSV 86
++ +++ + ER KGSIT +
Sbjct: 265 SVFSELPRLLERAGPGAEGKGSITGI 290
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 72.3 bits (178), Expect = 2e-16
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 3 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 62
+P R + A T +AEYFRDQ G+DVLL +D++ RF A E+ +G P+ GY P
Sbjct: 203 QPALMRLKAAFTATAIAEYFRDQ-GKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTP 261
Query: 63 TLATDMGTMQERITTTTKGSIT 84
++ + + + ER + KGSIT
Sbjct: 262 SVFSLLPKLLERSGNSQKGSIT 283
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 71.5 bits (176), Expect = 3e-16
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 3 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 62
E R + A T T+AEYFRDQ G+ VLL +D++ RF A E+ G P+ GY P
Sbjct: 229 ESALMRLKAAFTATTIAEYFRDQ-GKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPP 287
Query: 63 TLATDMGTMQERITTTTKGSITS 85
++ +++ + ER KGSIT+
Sbjct: 288 SVFSELPRLLERAGNGDKGSITA 310
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 70.4 bits (173), Expect = 7e-16
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 3 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 62
E P R + A T +AEYFRDQ G+DVLL +D++ RF A E+ G P+ GY P
Sbjct: 135 ESPLLRVKAAYTATAIAEYFRDQ-GKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPP 193
Query: 63 TLATDMGTMQERITTTTKGSIT 84
++ + + ER + KGSIT
Sbjct: 194 SVFALLPRLLERAGNSDKGSIT 215
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 66.4 bits (162), Expect = 2e-14
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
+ P R + T T+AEYFRD+ G+ VLL D++ R+ +A E+ G P+A +
Sbjct: 228 DRPALERLKGLSTATTIAEYFRDR-GKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFP 286
Query: 62 PTLATDMGTMQERITTTTKGSITSV 86
P++ ++ + ER + +GSIT+
Sbjct: 287 PSVFANLPRLLERTGNSDRGSITAF 311
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 66.2 bits (162), Expect = 2e-14
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
++ P R + A +AEYFRDQ G+DVLL +D++ RF A E+ G P+ GY
Sbjct: 228 DQSPLLRLKGAYVATAIAEYFRDQ-GKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYT 286
Query: 62 PTLATDMGTMQERITTTTKGSIT 84
P++ + + + ER + KGSIT
Sbjct: 287 PSVFSTLPRLLERAGASGKGSIT 309
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 65.8 bits (161), Expect = 4e-14
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 3 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 62
E P R LT +AEYFRD+ G++VLL +D++ RF A EV+ G P A GY P
Sbjct: 230 ESPMMRRLAPLTATAIAEYFRDR-GENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPP 288
Query: 63 TLATDMGTMQERI--TTTTKGSITSV 86
++ +++ + ER GSIT +
Sbjct: 289 SVFSELPRLLERAGPGAEGGGSITGI 314
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 65.6 bits (161), Expect = 4e-14
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 3 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 62
E P R R A +AEYFRDQ G+DVLL +D++ RF A E++ +G P+ GY P
Sbjct: 203 ESPLMRLRAAFYATAIAEYFRDQ-GKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPP 261
Query: 63 TLATDMGTMQER--ITTTTKGSIT 84
++ + + ER KGSIT
Sbjct: 262 SVFAKLPQLVERAGNGEEGKGSIT 285
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 64.6 bits (158), Expect = 9e-14
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 8 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 67
R + A T +AEYFRDQ G+ VLL +D++ RF +A E+ G P+ GY P++ +
Sbjct: 216 RLKAAYTATAIAEYFRDQ-GKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSS 274
Query: 68 MGTMQERITTTTKGSIT 84
+ + ER KGSIT
Sbjct: 275 LPRLLERAGNGEKGSIT 291
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 62.3 bits (152), Expect = 6e-13
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 3 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 62
EP R + A L +AEYFRDQ G+DVL +D++ RF A E+ G P+ GY P
Sbjct: 224 EPALMRRQAAYLTLAIAEYFRDQ-GKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTP 282
Query: 63 TLATDMGTMQERI--TTTTKGSIT 84
T+ ++ + ER +G+IT
Sbjct: 283 TVFAELPRLLERAGPGPIGEGTIT 306
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 61.3 bits (149), Expect = 1e-12
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 4 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPT 63
P RA+ ++AEYFRDQ G+ VLL +D++ RF +A E+ G P+ GY P+
Sbjct: 229 PSMERAKAGFVATSIAEYFRDQ-GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPS 287
Query: 64 LATDMGTMQERITTTTKGSITSV 86
+ + + ER + KGSIT++
Sbjct: 288 VFAALPRLMERAGQSDKGSITAL 310
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 58.6 bits (142), Expect = 1e-11
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
++P R + A T +AEYFRDQ G +V+L +D++ R A E+ +G P+ GY
Sbjct: 223 DQPALMRIKGAYTATAIAEYFRDQ-GLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYT 281
Query: 62 PTLATDMGTMQERITTTTKGSIT 84
P++ + + ER T GSIT
Sbjct: 282 PSVFAILPKLLERTGTNASGSIT 304
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 58.0 bits (140), Expect = 2e-11
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 8 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 67
R A G +AEYFRDQ G+ V+L +D++ RF +A EV G P+ GY P++ +
Sbjct: 236 RLNAAYVGTAIAEYFRDQ-GKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST 294
Query: 68 MGTMQERITTTTKGSITS 85
+ + ER + KG+IT+
Sbjct: 295 LPKLLERSGASDKGTITA 312
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 57.4 bits (139), Expect = 3e-11
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 71
A ++VAEYF++Q G DVL +D++ RF A E+ LG P++ GY P++ + + +
Sbjct: 231 AFCAMSVAEYFKNQ-GLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQL 289
Query: 72 QERI-TTTTKGSITS 85
ER KGSIT+
Sbjct: 290 MERAGKEEGKGSITA 304
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 56.3 bits (136), Expect = 8e-11
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 8 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 67
RA+ A +AEYFRD+ G VLL +D++ RF +A E+ G P+ G+ P++ +
Sbjct: 234 RAKAAYVATAIAEYFRDR-GLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAE 292
Query: 68 MGTMQERITTTTKGSITS 85
+ + ER GSIT+
Sbjct: 293 LPRLLERAGMGETGSITA 310
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 56.2 bits (136), Expect = 8e-11
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 8 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 67
R AL TVAEYFRDQ G+ V+LFID++ R+ +A +V+ G +P+ GY ++
Sbjct: 222 RCNAALVATTVAEYFRDQ-GKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDS 280
Query: 68 MGTMQERITTTTKGSIT 84
+ + ER T GSIT
Sbjct: 281 LPRLLERPGATLAGSIT 297
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 55.5 bits (134), Expect = 1e-10
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 5 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 64
P R R A+ +AEYFRD+ G++VLL +D++ RF QA E++ +G P+ GY P++
Sbjct: 236 PLMRLRAAMYCTRIAEYFRDK-GKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSV 294
Query: 65 ATDMGTMQERITTTTK--GSITS 85
+ + ER GSIT+
Sbjct: 295 FAKLPKLVERAGNAEPGGGSITA 317
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 54.7 bits (132), Expect = 3e-10
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 5 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 64
P R + T T+AEYFRDQ G +VLL +D++ R+ QA E++ +G P+ GY P++
Sbjct: 230 PLMRLKGCETATTIAEYFRDQ-GLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSV 288
Query: 65 ATDMGTMQERITT--TTKGSITS 85
+ + ER +GSIT+
Sbjct: 289 FAKLPALVERAGNGGPGQGSITA 311
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 53.9 bits (129), Expect = 6e-10
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
N P AR TG+T+AEYFRD G DV L D+ R+ +A E+S L +P GY
Sbjct: 728 NMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 786
Query: 62 PTLATDMGTMQER 74
LA+ + ER
Sbjct: 787 AYLASKLAEFYER 799
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 52.8 bits (127), Expect = 1e-09
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
N P AR TG+T+AEYFRD G DV L D+ R+ +A E+S L +P GY
Sbjct: 294 NMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAEAMREISGRLEEMPGEEGYP 352
Query: 62 PTLATDMGTMQER 74
LA+ + ER
Sbjct: 353 AYLASRLAEFYER 365
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 52.3 bits (126), Expect = 2e-09
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
N P AR TG+T+AEY+RD G DV L D+ R+ +A E+S L +P GY
Sbjct: 296 NMPVAAREASIYTGITIAEYYRDM-GYDVALMADSTSRWAEALREISGRLEEMPGEEGYP 354
Query: 62 PTLATDMGTMQER 74
L + + ER
Sbjct: 355 AYLGSRLAEFYER 367
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 591
Score = 52.1 bits (125), Expect = 2e-09
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
N P AR TG+T+AEYFRD G +V + D+ R+ +A E+S L +P+ GY
Sbjct: 300 NMPVAAREASIYTGITLAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 358
Query: 62 PTLATDMGTMQER 74
L + + ER
Sbjct: 359 AYLGARLASFYER 371
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found
in the membranes of vacuoles, the golgi apparatus and in
other coated vesicles in eukaryotes. Archaea have a
protein which is similar in sequence to V-ATPases, but
functions like an F-ATPase (called A-ATPase). A similar
protein is also found in a few bacteria.
Length = 369
Score = 51.5 bits (124), Expect = 4e-09
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
N P AR TG+T+AEYFRD G +V L D+ R+ +A E+S L +P GY
Sbjct: 229 NMPVAAREASIYTGITIAEYFRDM-GYNVALMADSTSRWAEALREISGRLEEMPGEEGYP 287
Query: 62 PTLATDMGTMQER----ITTTTKGSITSVQV 88
L + + ER + G SV +
Sbjct: 288 AYLGARLASFYERAGRVKCLGSPGREGSVTI 318
>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
subunit B. These ATPases couple ATP hydrolysis to the
build up of a H+ gradient, but V-type ATPases do not
catalyze the reverse reaction. The Vacuolar (V-type)
ATPase is found in the membranes of vacuoles, the golgi
apparatus and in other coated vesicles in eukaryotes.
Archaea have a protein which is similar in sequence to
V-ATPases, but functions like an F-ATPase (called
A-ATPase). A similar protein is also found in a few
bacteria. This subfamily consists of the non-catalytic
beta subunit.
Length = 276
Score = 50.7 bits (122), Expect = 6e-09
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
N+P R LT AEY ++G+ VL+ + ++ + +A E+SA +P GY
Sbjct: 140 NDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYP 199
Query: 62 PTLATDMGTMQER--ITTTTKGSITSVQVRECPN 93
+ TD+ T+ ER GSIT + + PN
Sbjct: 200 GYMYTDLATIYERAGRVEGRNGSITQIPILTMPN 233
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 48.8 bits (116), Expect = 3e-08
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
+ P R R T+AE+FRD G+ V+L D++ R+ +A E++ G + Y
Sbjct: 220 DRPALERVRALFVATTIAEFFRDN-GKRVVLLADSLTRYARAAREIALAAGETAVSGEYP 278
Query: 62 PTLATDMGTMQERITTTTKGSITS 85
P + + + + ER KGSIT+
Sbjct: 279 PGVFSALPRLLERTGMGEKGSITA 302
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 48.7 bits (116), Expect = 3e-08
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 16 LTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 75
+T+AEYFRDQ G VL +D++ R+ A EV+ G SA Y ++ + ER
Sbjct: 236 MTIAEYFRDQ-GHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERA 294
Query: 76 TTTTKGSITS 85
KGSIT+
Sbjct: 295 GNNDKGSITA 304
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 47.7 bits (113), Expect = 8e-08
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 10 RVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 69
R A ++AEYFRDQ G +VLL +D++ RF A V + +P G + + M
Sbjct: 229 RAAKLATSIAEYFRDQ-GNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMK 286
Query: 70 TMQERITTTTKGSITSV 86
+ ER T KGSIT +
Sbjct: 287 KLLERSGKTQKGSITGI 303
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 47.5 bits (114), Expect = 9e-08
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLAT 66
TG+T+AEY+RD G DVLL D+ R+ +A E+S L +P GY LA+
Sbjct: 311 TGITIAEYYRDM-GYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLAS 362
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
production and conversion].
Length = 463
Score = 47.7 bits (114), Expect = 9e-08
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
++P R LTVAEY ++ VL+ + ++ + +A E+SA +P GY
Sbjct: 217 DDPAVERIITPRMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYP 276
Query: 62 PTLATDMGTMQER--ITTTTKGSITSVQVRECPN 93
+ TD+ T+ ER KGSIT + + P
Sbjct: 277 GYMYTDLATIYERAGRIRGRKGSITQIPILTMPG 310
>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 458
Score = 46.3 bits (110), Expect = 3e-07
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
++P R LT AEY ++ VL+ + ++ + +A E+SA +P GY
Sbjct: 212 DDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYP 271
Query: 62 PTLATDMGTMQER--ITTTTKGSITSVQVRECPN 93
+ TD+ T+ ER KGSIT + + P
Sbjct: 272 GYMYTDLATIYERAGRVKGKKGSITQMPILTMPG 305
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 43.7 bits (103), Expect = 2e-06
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
+E P R + +A Y+RD+ G DVLL +D++ R+ A E++ LG P+ GY
Sbjct: 220 DESPLMRIKATELCHAIATYYRDK-GHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYP 278
Query: 62 PT 63
P+
Sbjct: 279 PS 280
>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 466
Score = 42.8 bits (101), Expect = 5e-06
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
N+P R LT AEY Q + VL+ + ++ + A EVSA +P G+
Sbjct: 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFP 280
Query: 62 PTLATDMGTMQERI--TTTTKGSITSVQVRECPN 93
+ TD+ T+ ER GSIT + + PN
Sbjct: 281 GYMYTDLATIYERAGRVEGRNGSITQIPILTMPN 314
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 42.6 bits (101), Expect = 6e-06
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
++PPG + G +AEYFRDQ GQD L+ D++ + A E+S LL R P
Sbjct: 229 SDPPGLQYLAPFAGCAIAEYFRDQ-GQDALIVYDDLSKHAAAYRELSLLLRRPP 281
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 41.3 bits (97), Expect = 1e-05
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 18 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT 77
+AE FRD+ GQ VLL +D++ R+ A E++ +G P+ GY P++ + + ER
Sbjct: 256 IAEDFRDR-GQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGN 314
Query: 78 --TTKGSITS 85
+ GSIT+
Sbjct: 315 GISGGGSITA 324
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 39.8 bits (93), Expect = 3e-05
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 12 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 71
A L + G D L+ +D + R +A E+ GY L ++ +
Sbjct: 69 AAARLLSKAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELREL 119
Query: 72 QERITTTTKGSITSVQV 88
ER I ++QV
Sbjct: 120 LERARKGGVTVIFTLQV 136
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 39.6 bits (93), Expect = 6e-05
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
++PP V L VAE F + + VL+ + ++ F A E+S + +IPS GY
Sbjct: 205 SDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYP 264
Query: 62 PTLATDMGTMQER-ITTTTKGSITSVQVRECP 92
+L +D+ + E+ + GSIT + V P
Sbjct: 265 GSLYSDLASRYEKAVDFEDGGSITIIAVTTMP 296
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 38.7 bits (91), Expect = 1e-04
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 2 NEPPGAR---ARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAV 58
++P R R+ALT AEY ++G VL+ + ++ + +A E+SA +P
Sbjct: 214 DDPAIERILTPRMALT---AAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRR 270
Query: 59 GYQPTLATDMGTMQER--ITTTTKGSIT 84
GY + TD+ T+ ER KGSIT
Sbjct: 271 GYPGYMYTDLATIYERAGRIKGKKGSIT 298
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 37.2 bits (87), Expect = 4e-04
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
G +AEYFRD G+DVL+ D++ + A E+S LL R P
Sbjct: 241 AGCAMAEYFRDN-GKDVLIVYDDLSKHAVAYREISLLLRRPP 281
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 501
Score = 37.0 bits (86), Expect = 6e-04
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
TG T+ EYFRD G+ L+ D++ + A ++S LL R P
Sbjct: 240 TGCTMGEYFRDN-GKHALIIYDDLSKQAVAYRQISLLLRRPP 280
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 35.5 bits (82), Expect = 0.002
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
N+PPG + ++ E+F +Q G+DVL+ D++ + +A E+S LL R P
Sbjct: 229 NDPPGLQYIAPYAATSIGEHFMEQ-GRDVLIVYDDLTQHARAYRELSLLLRRPP 281
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta and
epsilon subunits with a stoichiometry of 3:3:1:1:1. The
alpha subunit of the F1 ATP synthase can bind
nucleotides, but is non-catalytic.
Length = 274
Score = 34.9 bits (81), Expect = 0.003
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
TG + EYF D G+ L+ D++ + A ++S LL R P
Sbjct: 148 TGCAMGEYFMD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPP 188
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 32.3 bits (75), Expect = 0.019
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
G + EYF D G+D L+ D++ + A ++S LL R P
Sbjct: 241 AGCAMGEYFMDN-GKDALIVYDDLSKQAVAYRQLSLLLRRPP 281
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS;
Provisional.
Length = 914
Score = 29.9 bits (67), Expect = 0.15
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 3 EPPGARARVALTGLTVAEY------FR-DQEGQDVL--LFIDNIFRFTQAGSEVSALLGR 53
E PG RA+VA T TV++Y ++ D E + L L +NI +F Q SEVS L+
Sbjct: 251 EDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDT 310
Query: 54 I 54
I
Sbjct: 311 I 311
>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit.
Length = 485
Score = 29.5 bits (67), Expect = 0.21
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
TG +AEYF G+ L+ D++ + QA ++S LL R P
Sbjct: 220 TGAALAEYFM-YRGRHTLIIYDDLSKQAQAYRQMSLLLRRPP 260
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 29.2 bits (65), Expect = 0.23
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 3 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 62
EP G + +G+T+ EYF ++ G+ L D++ + A ++S LL R P Y
Sbjct: 265 EPAGLQYLAPYSGVTMGEYFMNR-GRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPG 323
Query: 63 TLATDMGTMQERITTTTK----GSITSVQVRE 90
+ + ER + GS+T++ + E
Sbjct: 324 DVFYLHSRLLERAAMLSPGKGGGSVTALPIVE 355
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase.
Length = 301
Score = 27.4 bits (61), Expect = 1.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 6 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
G A ++L G T+ +G++VLL D+ + + + A LGR
Sbjct: 10 GLSATISLYGATLLSLKVPDKGEEVLLGSDDADGYLKDANYFGATLGRYA 59
>gnl|CDD|113849 pfam05094, LEF-9, Late expression factor 9 (LEF-9). Late
expression factor 9 (LEF-9) is one of the primary
components of RNA polymerase produced by baculoviruses.
LEF-9 is homologous to the largest beta-subunit of
prokaryotic DNA-directed RNA polymerase.
Length = 487
Score = 26.6 bits (59), Expect = 2.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 42 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTTKGSITS 85
++G++ S L + S Y+ T TD+ T+ ER T+ ITS
Sbjct: 389 ESGAKGSKNL--VDSTRQYRQTRKTDIDTVAERAITSLNSYITS 430
>gnl|CDD|236424 PRK09238, PRK09238, bifunctional aconitate hydratase
2/2-methylisocitrate dehydratase; Validated.
Length = 835
Score = 26.3 bits (59), Expect = 2.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 47 VSALLGRIPSAVGYQ 61
V ALLGRIP+ YQ
Sbjct: 802 VCALLGRIPTVEEYQ 816
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 25.8 bits (58), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 23 RDQEGQDVLLFIDNIFRFTQA 43
R G+ +LFID I RF +A
Sbjct: 87 RRSAGRRTILFIDEIHRFNKA 107
>gnl|CDD|151811 pfam11371, DUF3172, Protein of unknown function (DUF3172). This
family of proteins has no known function.
Length = 140
Score = 25.4 bits (56), Expect = 3.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 80 KGSITSVQVRECPNFMN 96
+G ITS QVR+C N MN
Sbjct: 97 RGLITSEQVRDCKNRMN 113
>gnl|CDD|217411 pfam03185, CaKB, Calcium-activated potassium channel, beta subunit.
Length = 201
Score = 25.8 bits (57), Expect = 4.0
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 6/39 (15%)
Query: 16 LTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRI 54
+ E F+ Q + + A + LL R+
Sbjct: 129 ENIKENFKKNNSQTFTCY------YDPAERQEDVLLRRL 161
>gnl|CDD|237585 PRK14015, pepN, aminopeptidase N; Provisional.
Length = 875
Score = 25.5 bits (57), Expect = 5.6
Identities = 9/12 (75%), Positives = 9/12 (75%), Gaps = 3/12 (25%)
Query: 15 GLTVAEYFRDQE 26
GLTV FRDQE
Sbjct: 326 GLTV---FRDQE 334
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 25.0 bits (55), Expect = 6.9
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 35 DNIFRFTQAGSEVSALLGRIPSAVGYQP 62
+NIF F +V ALL A GY P
Sbjct: 674 ENIFIFGHTVEQVKALL-----AKGYDP 696
>gnl|CDD|238548 cd01128, rho_factor, Transcription termination factor rho is a
bacterial ATP-dependent RNA/DNA helicase. It is a
homohexamer. Each monomer consists of an N-terminal
domain of the OB fold, which is responsible for binding
to cysteine rich nucleotides. This alignment is of the
C-terminal ATP binding domain.
Length = 249
Score = 25.0 bits (55), Expect = 7.3
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPS 56
+EPP +VA L A+ + G+DV++ +D+I R +A + V G+I S
Sbjct: 78 DEPPERHVQVAEMVLEKAKRLVEH-GKDVVILLDSITRLARAYNTVVPPSGKILS 131
>gnl|CDD|169427 PRK08402, PRK08402, replication factor A; Reviewed.
Length = 355
Score = 24.8 bits (54), Expect = 7.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 8 RARVALTGLTVAEYFRDQEGQDVLLFID 35
RARV L VA+Y+ DV+ ID
Sbjct: 111 RARVVLWDAKVAKYYNKINVGDVIKVID 138
>gnl|CDD|223074 PHA03396, lef-9, late expression factor 9; Provisional.
Length = 493
Score = 24.9 bits (55), Expect = 9.2
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 60 YQPTLATDMGTMQERITTTTKGSITSV-QVREC 91
Y+ T TD+ T+ ER + I+S +V+ C
Sbjct: 408 YKKTKYTDIDTVAERAIKSLNSYISSHNRVKVC 440
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 24.7 bits (54), Expect = 9.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 54 IPSAVGYQP-TLATDMGTMQERITTTTKGSITS 85
I SA Y+P T + +G QE +TTT K +I +
Sbjct: 5 IVSARKYRPSTFESVVG--QEALTTTLKNAIAT 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.377
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,683,576
Number of extensions: 377183
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 72
Length of query: 96
Length of database: 10,937,602
Length adjustment: 63
Effective length of query: 33
Effective length of database: 8,143,300
Effective search space: 268728900
Effective search space used: 268728900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)