RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6464
(96 letters)
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 222 bits (568), Expect = 7e-73
Identities = 86/87 (98%), Positives = 86/87 (98%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY
Sbjct: 226 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 285
Query: 61 QPTLATDMGTMQERITTTTKGSITSVQ 87
QPTLATDMGTMQERITTT KGSITSVQ
Sbjct: 286 QPTLATDMGTMQERITTTKKGSITSVQ 312
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 209 bits (534), Expect = 9e-68
Identities = 70/87 (80%), Positives = 79/87 (90%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
MNEPPGAR RV LT LT+AEYFRD QDVLLFIDNIFRF QAGSEVSALLGR+PSAVGY
Sbjct: 239 MNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGY 298
Query: 61 QPTLATDMGTMQERITTTTKGSITSVQ 87
QPTL+T+MG++QERIT+T +GSITS+Q
Sbjct: 299 QPTLSTEMGSLQERITSTKEGSITSIQ 325
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 204 bits (522), Expect = 3e-66
Identities = 74/87 (85%), Positives = 83/87 (95%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
MNEPPGAR RVALTGLT+AEYFRD++GQD LLFIDNIFRFTQAGSEVSALLGR+PSA+GY
Sbjct: 218 MNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGY 277
Query: 61 QPTLATDMGTMQERITTTTKGSITSVQ 87
QPTLAT+MG +QERIT+T KGSITS+Q
Sbjct: 278 QPTLATEMGQLQERITSTAKGSITSIQ 304
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 154 bits (391), Expect = 4e-46
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
N P AR TG+T+AEYFRD G DV L D+ R+ +A E+S L +P GY
Sbjct: 298 SNMPVAAREASIYTGITIAEYFRD-MGYDVALMADSTSRWAEALREISGRLEEMPGEEGY 356
Query: 61 QPTLATDMGTMQERI-------TTTTKGSITSVQ 87
LA+ + ER + GS++ +
Sbjct: 357 PAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIG 390
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 137 bits (347), Expect = 7e-40
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
N P AR G+T+AEYFRDQ G V L D+ R+ +A E+S+ L +P+ GY
Sbjct: 292 SNMPVAAREASIYVGVTIAEYFRDQ-GFSVALMADSTSRWAEALREISSRLEEMPAEEGY 350
Query: 61 QPTLATDMGTMQERITTTT-----KGSITSVQ 87
P LA + ER +G++T V
Sbjct: 351 PPYLAARLAAFYERAGKVITLGGEEGAVTIVG 382
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 102 bits (255), Expect = 2e-27
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
++P R LTVAEY + VL+ + ++ +++A E+ A IP GY
Sbjct: 224 ADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGY 283
Query: 61 QPTLATDMGTMQER--ITTTTKGSITSVQV 88
+ TD+ T+ ER + KGS+T + +
Sbjct: 284 PGYMYTDLATIYERAGVVEGKKGSVTQIPI 313
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 76.9 bits (190), Expect = 1e-18
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 3 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 62
P R + A T T+AEYFRDQ G++VLL +D++ R+ +A +V G G+ P
Sbjct: 136 RPALERMKAAFTATTIAEYFRDQ-GKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPP 194
Query: 63 TLATDMGTMQERITTTTKGSITSV 86
++ + + + ER KGSIT++
Sbjct: 195 SVFSSLPKLLERAGPAPKGSITAI 218
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 75.9 bits (187), Expect = 6e-18
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
++P R LT AEY + G VL+ + +I + +A ++ A +P GY
Sbjct: 223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYP 282
Query: 62 PTLATDMGTMQER--ITTTTKGSIT 84
+ TD+ T+ ER I KGS+T
Sbjct: 283 GYMYTDLATLYERAGIVKGAKGSVT 307
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 72.4 bits (178), Expect = 9e-17
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 2 NEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQ 61
+ P R + A +AE FRD+ GQ VLL +D++ R+ A E++ +G P+ GY
Sbjct: 222 DVSPLLRMQGAAYATRIAEDFRDR-GQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYP 280
Query: 62 PTLATDMGTMQER--ITTTTKGSITSV 86
P++ + + ER GSIT+
Sbjct: 281 PSVFAKLPALVERAGNGIHGGGSITAF 307
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 33.8 bits (78), Expect = 0.004
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
G + EYF + G+ L+ D++ + A E+S LL R P
Sbjct: 241 AGCAMGEYFMYK-GKHALVVYDDLSKQAAAYRELSLLLRRPP 281
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 33.8 bits (78), Expect = 0.004
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
TG +AEYF + + L+ D++ + QA ++S LL R P
Sbjct: 242 TGAALAEYFMYR-ERHTLIIYDDLSKQAQAYRQMSLLLRRPP 282
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 33.8 bits (78), Expect = 0.004
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
G + EYF G+D L+ D++ + A ++S L+ R P
Sbjct: 254 AGCAMGEYFAYS-GRDALVVYDDLSKHAVAYRQLSLLMRRPP 294
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 33.4 bits (77), Expect = 0.005
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
G + EYFRD+ G+D L+ D++ + A ++S LL R P
Sbjct: 241 AGCAMGEYFRDR-GEDALIIYDDLSKQAVAYRQISLLLRRPP 281
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 33.0 bits (76), Expect = 0.007
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 14 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 55
+G ++ EYFRD G+ L+ D++ + A ++S LL R P
Sbjct: 249 SGCSMGEYFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPP 289
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 27.5 bits (60), Expect = 0.65
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 13 LTGLTVAEYFRDQEGQDVLLF 33
TGL A+ +G ++
Sbjct: 20 PTGLGAAKRLNQIDGPSWMIV 40
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 26.0 bits (56), Expect = 2.2
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 13 LTGLTVAEYFRDQEGQDVLLF 33
TGL A + ++ L+
Sbjct: 19 PTGLGAAVRLTELGYKNWHLY 39
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 25.5 bits (55), Expect = 3.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 13 LTGLTVAEYFRDQEGQDVLLF 33
GLT+AE Q + VL+
Sbjct: 17 FFGLTIAERVATQLDKRVLVL 37
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 24.4 bits (54), Expect = 7.3
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 23 RDQEGQDVLLFIDNIFRFTQA 43
G+ +LF+D + RF ++
Sbjct: 101 NRNAGRRTILFVDEVHRFNKS 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.377
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,372,947
Number of extensions: 69040
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 20
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)