RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6464
         (96 letters)



>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
           ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 276

 Score =  123 bits (310), Expect = 5e-37
 Identities = 87/93 (93%), Positives = 87/93 (93%)

Query: 1   MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
           MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY
Sbjct: 141 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 200

Query: 61  QPTLATDMGTMQERITTTTKGSITSVQVRECPN 93
           QPTLATDMGTMQERITTT KGSITSVQ    P 
Sbjct: 201 QPTLATDMGTMQERITTTKKGSITSVQAIYVPA 233


>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
           ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 285

 Score =  112 bits (283), Expect = 7e-33
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 1   MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
            ++    +     +G ++ EYFRD  G+  L+  D++ +   A  ++S LL R P    Y
Sbjct: 142 ASDAAPLQYLAPYSGCSMGEYFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 200

Query: 61  QPTLATDMGTMQERITTT----TKGSITSVQVRECPN 93
              +      + ER          GS+T++ V E   
Sbjct: 201 PGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQA 237


>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
           ATP synthase {Spinach (Spinacia oleracea), chloroplast
           [TaxId: 3562]}
          Length = 276

 Score = 83.1 bits (205), Expect = 2e-21
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 1   MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
            + P   +     TG  +AEYF  +  +  L+  D++ +  QA  ++S LL R P    Y
Sbjct: 133 ADSPATLQYLAPYTGAALAEYFMYR-ERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAY 191

Query: 61  QPTLATDMGTMQERITTTTK----GSITSVQV 88
              +      + ER    +     GS+T++ +
Sbjct: 192 PGDVFYLHSRLLERAAKLSSLLGEGSMTALPI 223


>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
           ATPase domain {Escherichia coli [TaxId: 562]}
          Length = 289

 Score = 63.5 bits (154), Expect = 4e-14
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 1   MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 60
            +EP     +VA   +  A+   + + +DV++ +D+I R  +A + V    G++ +    
Sbjct: 104 FDEPASRHVQVAEMVIEKAKRLVEHK-KDVIILLDSITRLARAYNTVVPASGKVLTGGVD 162

Query: 61  QPTLATDMGTMQERITTTTKGSITSVQV 88
              L                GS+T +  
Sbjct: 163 ANALHRPKRFFGAARNVEEGGSLTIIAT 190


>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
          {Bacteriophage T4 [TaxId: 10665]}
          Length = 241

 Score = 27.2 bits (59), Expect = 0.25
 Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 6/35 (17%)

Query: 11 VALTGL------TVAEYFRDQEGQDVLLFIDNIFR 39
          + L+G+      T A++               I  
Sbjct: 4  IFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKD 38


>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus
          influenzae [TaxId: 727]}
          Length = 269

 Score = 23.9 bits (51), Expect = 4.1
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 3  EPPGARARVALTGLTVAEYFRDQEGQDVL 31
          +     A+++L G  +  +      QDVL
Sbjct: 27 KHAVGTAKISLQGAQLISWKPQNAKQDVL 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,286
Number of extensions: 11373
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 7
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)