BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy647
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D600|PSF2_MOUSE DNA replication complex GINS protein PSF2 OS=Mus musculus GN=Gins2
PE=1 SV=1
Length = 185
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF G+P VPLWLAINLKQRQKCR
Sbjct: 1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCR 59
Query: 61 LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
L+ P WM++E L ++++EE+K F +PS HYME++ ++L+ +D+IP D IRTLIKD
Sbjct: 60 LLPPEWMDVEKLEQMRDEERKEETFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKD 119
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
+WD R++KLR S D+FV+ HA L++LT EI+S L L+ M L+
Sbjct: 120 LWDTRMAKLRVSADSFVRQQEAHAKLDNLTLMEISSSGAFLTQALNHMYKLR 171
>sp|Q9Y248|PSF2_HUMAN DNA replication complex GINS protein PSF2 OS=Homo sapiens GN=GINS2
PE=1 SV=1
Length = 185
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF G+P +VPLWLAINLKQRQKCR
Sbjct: 1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59
Query: 61 LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
L+ P WM++E L ++++ E+K F MPS +YME++ ++L+ +D+IP D IRTL+KD
Sbjct: 60 LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
+WD RI+KLR S D+FV+ HA L++LT EIN+ L L+ M L+
Sbjct: 120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 171
>sp|Q7ZT46|PSF2_XENLA DNA replication complex GINS protein PSF2 OS=Xenopus laevis
GN=gins2 PE=2 SV=1
Length = 185
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 123/172 (71%), Gaps = 1/172 (0%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
MD +E+EF+AE + V +IP F+ L+ ++LI GD+GPF +P +VPLWLAINLKQRQKCR
Sbjct: 1 MDASEVEFLAEKEQVTVIPNFS-LDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCR 59
Query: 61 LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
+V P WM++E L I+++E++ F MPS +YME++ ++L+ AD+IP D IRTL+KD
Sbjct: 60 IVPPEWMDVEKLEAIRDQERREETFTPMPSPYYMELTKLLLNHAADNIPKADEIRTLVKD 119
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
WD RI+KLR S D+FVK HA L++LT EIN+I + L+ M L+
Sbjct: 120 TWDTRIAKLRLSADSFVKGQEAHAKLDNLTLMEINTIGTFFTESLNHMYKLR 171
>sp|Q9VQY9|PSF2_DROME Probable DNA replication complex GINS protein PSF2 OS=Drosophila
melanogaster GN=Psf2 PE=2 SV=1
Length = 203
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 126/172 (73%), Gaps = 1/172 (0%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
MDP+ IEFI E + IIP F++ L HLI G VGPFRAG P VPLW+A +L+++QKCR
Sbjct: 1 MDPSIIEFIGEKCMISIIPNFSNEPL-HLIYGPVGPFRAGFPVFVPLWMATHLRKQQKCR 59
Query: 61 LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
+V P WM+++ L EIKEEEK+S+FF KMP +HYM ++ +++ DD+P + +RT+IKD
Sbjct: 60 IVPPEWMDMDILEEIKEEEKRSKFFTKMPCEHYMVVAQLVMSTAPDDVPRCEELRTVIKD 119
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
I+D+R SKLR+SID F+K G +A L++LT EI+S+R IL LD ++ +
Sbjct: 120 IFDIRESKLRTSIDAFIKGEGTYAKLDNLTLLEIHSVRPILPYSLDHIARYQ 171
>sp|Q9C7A8|PSF2_ARATH DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana
GN=GINS2 PE=2 SV=2
Length = 210
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 114/188 (60%), Gaps = 3/188 (1%)
Query: 3 PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
P E+EF+AED+ VEI+P N + ++ ISGD G F IP KVPLWLA+ LK+R KC
Sbjct: 14 PQEVEFMAEDELVEIVPNMN-MEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFR 72
Query: 63 LPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIW 122
P WM+++ LT+I E E++S+ + Y+E++ ++ D DDIP++ ++R+L++DI
Sbjct: 73 PPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPDMYMVRSLVEDIR 132
Query: 123 DLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTL 182
D+R+ KL +++ +F G +++++ E+N +R + L+ + DVD
Sbjct: 133 DVRLHKLETNLGSF--QGTSAVKISNVSAMEVNIVRPFVIRALEAFYKHDKPEADVDRDT 190
Query: 183 VTSNSQSQ 190
+S Q +
Sbjct: 191 RSSRQQRE 198
>sp|O62193|PSF2_CAEEL Probable DNA replication complex GINS protein PSF2
OS=Caenorhabditis elegans GN=F31C3.5 PE=3 SV=1
Length = 180
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 105/162 (64%), Gaps = 2/162 (1%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
M+ EFIA + +E+IP + IHLISGD+GPF AG+P ++P+W AI +K++ C+
Sbjct: 1 MNAERCEFIAGNSLIEVIPSISDDRPIHLISGDIGPFEAGVPCRIPVWTAILMKRKHNCK 60
Query: 61 LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
+V P WM+++ L +I E +S+ K+P DH+ E+SH+++ +DI V+ +++L++D
Sbjct: 61 VVAPQWMDVDELKKILTSETESQGLAKLP-DHFFEISHMLVRDAREDIFEVEAVKSLVQD 119
Query: 121 IWDLRISKLRSSIDTFVKSGGG-HATLNHLTQFEINSIRNIL 161
I+D R +KLRSS F++ HA L+++ E +S R L
Sbjct: 120 IYDRRDAKLRSSAIEFLRQNQTCHAQLDNVQLIEASSARATL 161
>sp|Q8IHI1|PSF2_BRUMA Probable DNA replication complex GINS protein PSF2 OS=Brugia malayi
GN=BMBAC01P19.06 PE=3 SV=1
Length = 190
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
M P + EFIA ++ ++I P+FN L+ +HLI GD+GPF AG+P VPLW+A+ L++R+KC
Sbjct: 1 MTPEQCEFIAGNEWIQINPQFN-LDELHLICGDIGPFEAGMPIWVPLWIAVTLRKRRKCT 59
Query: 61 LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
++ P W+ +E L ++ E + F ++P Y+E++H+ + +D+P+ D+IR ++D
Sbjct: 60 IIPPQWLCVEELKKLVIAESGTNAFGQVPR-FYLEIAHMFVQYAKEDLPDSDMIRVYVQD 118
Query: 121 IWDLRISKLRSSIDTFV-KSGGGHATLNHLTQFEINSIRNIL 161
+WD R +KL +S F+ + HA ++++T E+ I+ L
Sbjct: 119 LWDKRSAKLNNSSTKFLGQVESCHARMDNITLMEVAYIKRSL 160
>sp|P0CQ30|PSF2_CRYNJ DNA replication complex GINS protein PSF2 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=PSF2 PE=3 SV=1
Length = 185
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 93/136 (68%), Gaps = 3/136 (2%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
+ P E+ F+AE ++ I+P F+ + + LISG GPFR ++VPLWL ++LK+++KCR
Sbjct: 11 LTPDELAFLAEHDHISIVPLFS-MTRVRLISGIYGPFRPPSASRVPLWLGLSLKKKRKCR 69
Query: 61 LVLPTWMNLETLTE-IKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIK 119
+V P W++ E L +++E++ S F ++P +ME+S ++LDI +DD+ L+R+L+K
Sbjct: 70 IVPPEWLSAERLQAFLRDEKENSEGFERLPR-RFMEISKVLLDIASDDLSQPTLLRSLLK 128
Query: 120 DIWDLRISKLRSSIDT 135
DI ++R +K+R + +
Sbjct: 129 DIREVRQAKIRMGLQS 144
>sp|P0CQ31|PSF2_CRYNB DNA replication complex GINS protein PSF2 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=PSF2 PE=3 SV=1
Length = 185
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 93/136 (68%), Gaps = 3/136 (2%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
+ P E+ F+AE ++ I+P F+ + + LISG GPFR ++VPLWL ++LK+++KCR
Sbjct: 11 LTPDELAFLAEHDHISIVPLFS-MTRVRLISGIYGPFRPPSASRVPLWLGLSLKKKRKCR 69
Query: 61 LVLPTWMNLETLTE-IKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIK 119
+V P W++ E L +++E++ S F ++P +ME+S ++LDI +DD+ L+R+L+K
Sbjct: 70 IVPPEWLSAERLQAFLRDEKENSEGFERLPR-RFMEISKVLLDIASDDLSQPTLLRSLLK 128
Query: 120 DIWDLRISKLRSSIDT 135
DI ++R +K+R + +
Sbjct: 129 DIREVRQAKIRMGLQS 144
>sp|Q54BL9|PSF2_DICDI Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium
discoideum GN=gins2 PE=3 SV=1
Length = 223
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 95/162 (58%), Gaps = 8/162 (4%)
Query: 3 PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
P++IEF+AED + ++P F +LI L SG+ GPF P ++PLWLAI+LK+++KC +
Sbjct: 8 PSQIEFLAEDTTITVVPNFKMESLIFL-SGEYGPFVPSFPIEIPLWLAISLKKKKKCTIT 66
Query: 63 LPTWMNLETL-TEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDI 121
P WM L + +EE K FI++P +++ E+S ++L DDI +++ IR L DI
Sbjct: 67 PPDWMTYNKLKAKFQEENKIKDGFIELP-ENFDEISSLLLANCPDDIKDINKIRILKGDI 125
Query: 122 WDLRISKLRSSIDTFVKS---GGGHATL--NHLTQFEINSIR 158
R KL S+ + + S G T+ + + EIN IR
Sbjct: 126 LSRREKKLEESLKSHLNSLTDGESVTTMEFKNFSMMEINKIR 167
>sp|O94329|PSF2_SCHPO DNA replication complex GINS protein psf2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=psf2 PE=1 SV=1
Length = 183
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 99/169 (58%), Gaps = 5/169 (2%)
Query: 3 PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
P E+EF+A ++ + I+P ++ + L+S + + +VPLWLA+ LK++ R+V
Sbjct: 13 PEEMEFLAGNEYINIVPS-ETMDQLPLVSATIPIMKPPKKCRVPLWLALELKKQNLARIV 71
Query: 63 LPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIW 122
P WM + L I+++E ++ F ++P ++E +H++L+ ADDI +V+ IR ++ DI
Sbjct: 72 PPEWMEIGKLENIRDDELENETFSELPF-RWLETAHLLLNFCADDIEDVEDIRRILLDIR 130
Query: 123 DLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSL 171
+ R SK R+ ++ TL++L EIN IR I +V+D M +
Sbjct: 131 EARQSKARTGLEAI---NEVQLTLDNLGAMEINEIRPIFREVMDRMRKI 176
>sp|Q6BZ44|PSF2_DEBHA DNA replication complex GINS protein PSF2 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=PSF2 PE=3 SV=2
Length = 206
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 102/173 (58%), Gaps = 7/173 (4%)
Query: 3 PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
P+E+ F+AE++ + I+P+++ + + LI V R K+P+W+A+ LK + KC +V
Sbjct: 13 PSEVSFLAENEYITILPRYS-MKKLELIGTKVPTLRGMRREKIPIWIAVILKSQDKCNIV 71
Query: 63 LPTWMNLETLTEIKEEE-KKSRFFIKMPSDHYMEMSHIILDIGADDIPN-VDLIRTLIKD 120
P W+NL L E EEE K+ F +P + ++E+S I+L+ ADD+ + +R++I+D
Sbjct: 72 PPEWLNLIYLKEKYEEELKQPHKFSVLPWN-WLEISKILLNKAADDLSDPTHQLRSIIQD 130
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKD 173
+ ++R+ K R + +S + L+ L+ EIN +R + V++ + L +
Sbjct: 131 LREIRLVKSRKGLKELNES---NIQLDGLSLLEINELRPFVLTVMNKLRQLHE 180
>sp|Q6C5R2|PSF2_YARLI DNA replication complex GINS protein PSF2 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=PSF2 PE=3 SV=1
Length = 255
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 11/174 (6%)
Query: 3 PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVG---PFRAGIPAKVPLWLAINLKQRQKC 59
P+E+ F+AE++ +EI+P+ N I L D+ P R +VP+W+AI LK++Q+C
Sbjct: 13 PSELHFMAENETIEILPR-RVGNPIKLAGTDLPLMHPLRKN---RVPIWMAIALKKQQRC 68
Query: 60 RLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPN-VDLIRTLI 118
+ V P WM L I E + H++E++ I+L DD+ + +IR L+
Sbjct: 69 QFVPPDWMEESNLRRILAFEHANPTAFSNVDFHWLEIAQIVLTTAPDDLTSPPQVIRNLV 128
Query: 119 KDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
+DI ++R K R + ++ ++ L EIN +R + + ++ M ++
Sbjct: 129 RDIREVREQKSRQGMKEVNEN---MLQMDRLGALEINEMRPFVVEGMEEMIKIR 179
>sp|Q6CRT8|PSF2_KLULA DNA replication complex GINS protein PSF2 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=PSF2 PE=3 SV=1
Length = 201
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 30/197 (15%)
Query: 3 PAEIEFIAEDQNVEIIPKFN--------------HLNLIHLISGDVGPFRAGIPAKVPLW 48
P EI+F+ E++ I+P+ +LI V A +V LW
Sbjct: 13 PQEIQFLIENEPTRIMPRITTRKTKKQLAKDPGAQWSLITCDDSTVNNMVAMNSCEVTLW 72
Query: 49 LAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSD------HYMEMSHIILD 102
LA+ LKQ+ KC +V+P+W+ L+ L EK F +K PS +++ +S ++
Sbjct: 73 LALLLKQQGKCNVVVPSWLTLQQL------EKYLDFELKNPSRFSNLPWNWLVVSSLLFA 126
Query: 103 IGADDIPN-VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNIL 161
+DD + V L+R+ ++D+ ++R+ K+ + +S H L +L+ EIN +R
Sbjct: 127 RCSDDFQDPVHLLRSKVQDLREVRLGKVNKGLQYLNES---HLQLENLSLMEINEMRPYA 183
Query: 162 CDVLDTMSSLKDKQCDV 178
C ++D + ++ D D
Sbjct: 184 CGIMDKLRTIHDSSNDT 200
>sp|Q0UTE1|PSF2_PHANO DNA replication complex GINS protein PSF2 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=PSF2 PE=3
SV=1
Length = 242
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 34/195 (17%)
Query: 5 EIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLP 64
EI F+ E + V +IP+ L + L+ G + P VPLWLA+ LK++++ ++ P
Sbjct: 13 EIAFLCEMELVTVIPR-QRLEGLELLGGRIKPLNPPHRTNVPLWLALLLKRQRRANILPP 71
Query: 65 TWMNLETLTEIKEEE-----------------------KKSRFFIKMPSD--------HY 93
W+N +LT I + E F +D H+
Sbjct: 72 PWLNSHSLTAILDHEIDHDETFSPPPRLPPQPSANTLPTSPPFLSDNTADAAPDALPYHW 131
Query: 94 MEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFE 153
+E+ ++L+ +DD + D +R L++ + ++R++KLRS ++ V GG +N + E
Sbjct: 132 LEIGEMLLEAASDDFEDPDNVRKLLRGLREVRMAKLRSGVE--VLDAGGGVKMNGVGGME 189
Query: 154 INSIRNILCDVLDTM 168
+ R + V+D +
Sbjct: 190 VGEGRAFVTGVIDGL 204
>sp|Q59MA3|PSF2_CANAL DNA replication complex GINS protein PSF2 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=PSF2 PE=3 SV=1
Length = 155
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 45 VPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEE-KKSRFFIKMPSDHYMEMSHIILDI 103
VPLW+A+ LK + KC +V P W+ + L E E+E +K F +P +++E+S I+L+
Sbjct: 6 VPLWVALILKSQDKCSIVPPKWLTVAYLKERYEDEIRKPLQFSDLPW-NWLELSKILLEK 64
Query: 104 GADDIPN-VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILC 162
DD+ + VD +R++I+D+ + R+ K + + +S + LN L+ EIN +R +
Sbjct: 65 APDDLSDPVDQLRSVIQDLRETRLVKSKKGLKELNES---NIQLNGLSLLEINELRPFVI 121
Query: 163 DVLDTMSSLKD 173
V++ + L D
Sbjct: 122 PVMNKLRQLYD 132
>sp|Q4IC11|PSF2_GIBZE DNA replication complex GINS protein PSF2 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=PSF2 PE=3 SV=1
Length = 250
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 43/213 (20%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
+ P+E+ F+ E + V ++P+ L I L++G R + +PLWLAI LK++++
Sbjct: 9 LTPSEVAFLCEMELVTVVPR-QRLESIELLTGTTPALRPPHRSNLPLWLAILLKKQRRAN 67
Query: 61 LVLPTWMNLETLTEIKEEE-----------------KKSR-----------------FFI 86
+V P W++ ++L +I +E SR F
Sbjct: 68 IVPPPWLHPDSLRDIVHQETMVDRKGWAPPPPPPARADSRGNARNPFMDDETVLSPPFLP 127
Query: 87 KMPSD--------HYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVK 138
SD H+ E++ ++L +DDI + +R+L++D+ ++R +K+RSS
Sbjct: 128 SCTSDAPAGALPYHWFEVAEMLLAHASDDISSSSEVRSLLRDLQEVRAAKMRSSTAQLEG 187
Query: 139 SGGGHATLNHLTQFEINSIRNILCDVLDTMSSL 171
G +L + E+ R + V++ + L
Sbjct: 188 GVDGVMSLRGVGAMELAESRGFVIGVVEGVRKL 220
>sp|Q6FS76|PSF2_CANGA DNA replication complex GINS protein PSF2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=PSF2 PE=3 SV=1
Length = 215
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 3 PAEIEFIAEDQNVEIIPKFN------------------HLNLIHLISGDVGPFRAGIPAK 44
P E++F+ E++ V+I P+ +++ + ++ A +
Sbjct: 13 PEEVQFLVEEETVKIFPRITTRQKRRDKNRGAYGDVDTKWSMLTTENDNLNNMVAMRSTE 72
Query: 45 VPLWLAINLKQRQKCRLVLPTWMNLETLT-EIKEEEKKSRFFIKMPSDHYMEMSHIILDI 103
V LW+A+ LKQ+ KC +V P+W+ L L +I++E S F +P + ++ +++++
Sbjct: 73 VKLWIALLLKQQNKCSIVAPSWLTLRELNRKIQQETNNSDRFCDLPWN-WLVIANVLFAK 131
Query: 104 GADDIPN-VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILC 162
ADD + V +R+ ++D+ ++R +K+ + H L++L+ EIN +R +
Sbjct: 132 AADDFHDPVHELRSKVQDLREIRQTKVLKGLKQL---NASHLQLDNLSLLEINELRPFIV 188
Query: 163 DVLDTMSSLKD 173
+D + + D
Sbjct: 189 RTMDKLREIHD 199
>sp|Q75A06|PSF2_ASHGO DNA replication complex GINS protein PSF2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=PSF2 PE=3 SV=1
Length = 211
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 5 EIEFIAEDQNVEIIPKFN------------------HLNLIHLISGDVGPFRAGIPAKVP 46
E++F+ E++ ++I+P+ LI +V A +V
Sbjct: 15 EVQFLVENEPIKIMPRITTKPIRRKAASTPSAGSSVRWKLITTDDHNVNNMVAMSSTEVS 74
Query: 47 LWLAINLKQRQKCRLVLPTWMNLETLTEIKEEE-KKSRFFIKMPSDHYMEMSHIILDIGA 105
LWLA+ LKQ+ KC +V P W+ ++ L E E + + F +P + ++ ++H++ A
Sbjct: 75 LWLALLLKQQGKCSIVAPAWLTIKQLDSFIEFELQNTSRFANLPWN-WLIIAHLLFQKAA 133
Query: 106 DDIPN-VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDV 164
DD + V ++R I+D+ + R+ K+ + +S H L++L+ EIN +R V
Sbjct: 134 DDFRDPVHILRAKIQDLREARLGKIAKGLQHLNES---HLQLDNLSLSEINEMRPFAVGV 190
Query: 165 LDTMSSLKDKQCD 177
+D + + D
Sbjct: 191 MDKLRDIHAAAAD 203
>sp|Q2UEN6|PSF2_ASPOR DNA replication complex GINS protein psf2 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=psf2 PE=3 SV=1
Length = 269
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 59/227 (25%)
Query: 3 PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
P EI F+AE + V I+P+ L + L+ G V P A +PLWLA+ LK++++ ++
Sbjct: 11 PPEISFLAEMEMVTILPR-QRLEGLELLGGPVEPLLPPRRASLPLWLALLLKRQRRANIL 69
Query: 63 LPTWMNLETLTEIKEEEKK-------------------------------------SRFF 85
P W++ E+L+ I E E + R++
Sbjct: 70 PPPWLHPESLSLILEIETQHHEYQHAFSPPPPLPGQPSLRDRGKRPVAMPRYTPDGGRYY 129
Query: 86 IKMP-------------------SDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRI 126
P H++E+ ++LD +DD+ + D R L+K++ ++R
Sbjct: 130 PAPPFLPQNVAQDHVPSGEPPSLPFHWLEVGTMLLDAASDDLVDPDQTRRLLKELREVRT 189
Query: 127 SKLRSSIDTF--VKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSL 171
+K+RS +D +GGG L + E+ R + V+D + +
Sbjct: 190 AKIRSGVDVLDAASTGGGGVALTGVGAMEVGEGRGFIAGVVDGLRKI 236
>sp|P40359|PSF2_YEAST DNA replication complex GINS protein PSF2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PSF2 PE=3
SV=1
Length = 213
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 95/188 (50%), Gaps = 24/188 (12%)
Query: 3 PAEIEFIAEDQNVEIIPKF--------------NHLNLIHLISGD---VGPFRAGIPAKV 45
P EI+FI E++ ++I P+ NH LI+ D + A +V
Sbjct: 13 PEEIQFIVENEPIKIFPRITTRQKIRGDDRGTGNHTRW-QLITTDDKALNNMVAMRSTEV 71
Query: 46 PLWLAINLKQRQKCRLVLPTWMNLETL-TEIKEEEKKSRFFIKMPSDHYMEMSHIILDIG 104
LW+A+ LKQ+ KC +V P W+ + L +I+ E+ F ++P + ++ ++ I+ +
Sbjct: 72 VLWIALLLKQQSKCSIVAPQWLTTKELDRKIQYEKTHPDRFSELPWN-WLVLARILFNKA 130
Query: 105 ADDIPN-VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCD 163
DD + + +R I+D+ ++R K+ + +S H L++L+ EIN +R + +
Sbjct: 131 KDDFHDPIHELRGKIQDLREIRQIKVLKGLKYLNES---HLQLDNLSLLEINELRPFITE 187
Query: 164 VLDTMSSL 171
++D + +
Sbjct: 188 IMDKLREI 195
>sp|Q5B0M9|PSF2_EMENI DNA replication complex GINS protein psf2 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=psf2 PE=3 SV=2
Length = 272
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 7/86 (8%)
Query: 3 PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAK---VPLWLAINLKQRQKC 59
P EI F+AE + V I+P+ L + L+ G V P IP + VPLWLA+ LK++++
Sbjct: 11 PPEISFLAEMELVTIVPR-QRLEGLELLGGPVAPL---IPPRRTNVPLWLALLLKRQRRA 66
Query: 60 RLVLPTWMNLETLTEIKEEEKKSRFF 85
++ P W++ E+L+ I + E + + +
Sbjct: 67 NILPPPWLHPESLSLILDIETRDQAY 92
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 92 HYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTF--VKSGGGHATLNHL 149
H++E+ ++LD ADD+ + D R L+K++ ++R +K+RS ++ GG L +
Sbjct: 159 HWLEVGTMLLDAAADDLVDPDQTRRLLKELREVRSAKIRSGVEVLDDAAGPGGGVALTGV 218
Query: 150 TQFEINSIRNILCDVLDTMSSL 171
EI R + V+D + +
Sbjct: 219 GAMEIGEGRGFISGVVDGLRRI 240
>sp|Q4X161|PSF2_ASPFU DNA replication complex GINS protein psf2 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=psf2 PE=3 SV=1
Length = 271
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 61/229 (26%)
Query: 3 PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
P EI F+AE + V I+P+ L + L+ G V P A +PLWLA+ LK++++ ++
Sbjct: 11 PPEIAFLAEMEMVTILPR-QRLEGLELLGGQVEPLLPPRRASLPLWLALLLKRQRRANIL 69
Query: 63 LPTWMNLETLTEIKEEEKK---------------------------------------SR 83
P W++ E L+ I E E + R
Sbjct: 70 PPAWLHPEPLSLILEIETQHHEYENAFSPPPPLPGQPSVRDRNRGQRPIARARHTPDGQR 129
Query: 84 FFIKMP-------------------SDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDL 124
+F P H++E+ +++LD +DD+ + D IR L+K++ ++
Sbjct: 130 YFPSPPFLPQNIAQDNAHPSEPPSLPYHWLEVGNMLLDAASDDLVDPDQIRRLLKELREV 189
Query: 125 RISKLRSSIDTF--VKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSL 171
R++K+RS +D +GGG L + EI R + V+D + +
Sbjct: 190 RMAKIRSGVDVLDAAATGGGGVALTGVGAMEIGESRGFVTGVVDGLRKI 238
>sp|Q8SV74|PSF2_ENCCU Probable DNA replication complex GINS protein PSF2
OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU06_1410
PE=3 SV=1
Length = 175
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 15/166 (9%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
+ P EI IA ++ VEI P + + L+ P A++PL+ A+ LK+ C+
Sbjct: 3 ISPEEILHIAYEELVEIEP-MTSIPELRLLERTYPPLMPLDIARIPLYAALLLKKSNMCK 61
Query: 61 LVLPTWMNLETL-----TEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIR 115
+ LP+++ LE+L EI EK + P ++ ++ +L+ ++ +++ +
Sbjct: 62 IRLPSYLQLESLKMSMDVEI---EKADEYSCIHP--YFFPLATELLE-NCYNVESIEESK 115
Query: 116 TLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNIL 161
+++ I ++R++K I G +N++T FE N I+ ++
Sbjct: 116 MIVEKIKEIRLAKTLKGIKCL---DGKALNMNNITLFEFNEIKELI 158
>sp|Q7SAA9|PSF2_NEUCR DNA replication complex GINS protein psf-2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=psf-2 PE=3 SV=1
Length = 273
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 5 EIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLP 64
E+ F+AE + V ++P+ L+ I L+ G R A++PLWLA+ LK++++ +V P
Sbjct: 13 EVAFLAEMEMVTVVPR-QRLDSIDLLGGKTPQLRPPHRAQLPLWLALLLKKQRRANIVPP 71
Query: 65 TWMNLETLTEIKEEEKK 81
WM+ +L EI E K
Sbjct: 72 AWMHPASLAEIIHRETK 88
>sp|Q1DNY1|PSF2_COCIM DNA replication complex GINS protein PSF2 OS=Coccidioides immitis
(strain RS) GN=PSF2 PE=3 SV=1
Length = 268
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 3 PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
P+EI F+ E + V I+P+ L + L+ G P + +PLWLA+ LK++++ ++
Sbjct: 11 PSEITFLCEMEMVTIVPR-QRLEGLELLGGPTEPLIPPRRSSLPLWLALLLKRQRRANIL 69
Query: 63 LPTWMNLETLTEIKEEEKKSRFFIKMP 89
P W+N E L+E + E F+ P
Sbjct: 70 PPPWLNTEWLSEFLKAETDHDVFLPPP 96
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 92 HYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLR---SSIDTFVKSGGGHATLNH 148
H++E++ ++L+ +DD+ D IR +I+DI ++R++K+R +D GG L
Sbjct: 156 HWLELATMLLETASDDLVEPDQIRRIIRDIREIRMAKMRKFTEYVDATAIGGGEGLPLTG 215
Query: 149 LTQFEINSIRNILCDVLDTMSSL 171
+ EI R + +T+ +
Sbjct: 216 VGAMEIGEARGFMSGAAETLRQI 238
>sp|Q18F47|MPTA_HALWD GTP cyclohydrolase MptA OS=Haloquadratum walsbyi (strain DSM 16790)
GN=mptA PE=3 SV=1
Length = 309
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 77 EEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIR--TLIKDIWDLRISKLRSSID 134
E+E F ++P + + H L + AD P+VDLI + +D RI L D
Sbjct: 178 EDETIETFLEQVPQPGHSQRGHATLTVTADGSPDVDLIELADIARDAMSARIYNLAKRPD 237
Query: 135 TFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLVTSNSQS 189
+ HA +F + +R++ V+++ L D D V + SN +S
Sbjct: 238 EDYMTYHAHAD----AKFVEDCVRSMAEQVVNSFEHLDD---DAVVRMKQSNDES 285
>sp|P14751|MTR1_RHOSH Modification methylase RsrI OS=Rhodobacter sphaeroides GN=rsrIM
PE=1 SV=1
Length = 319
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 132 SIDTFVKSGGGHATLNHLTQFEINSIRNI--LCDVLDTMSSLKD 173
+++ KSG H++ + L EI + R++ +CD LDT++ L D
Sbjct: 13 AMNALRKSGQKHSSESQLGSSEIGTTRHVYDVCDCLDTLAKLPD 56
>sp|O23447|PME43_ARATH Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis
thaliana GN=PME43 PE=2 SV=1
Length = 701
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 115 RTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDK 174
R LI+ +DL I +RS ID + A + T+ +N+ R ++ D +D + +DK
Sbjct: 74 RNLIRSAFDLAIISIRSGIDRGMIDLKSRADADMHTREALNTCRELMDDAIDDLRKTRDK 133
>sp|A6T2D5|OBG_JANMA GTPase obg OS=Janthinobacterium sp. (strain Marseille) GN=obg PE=3
SV=1
Length = 369
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 26 LIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRF- 84
L+H++ D+ PF P K + LK+ + P W+ L L + EEE+K R
Sbjct: 241 LLHIV--DLAPFDNVDPVKEAKAIVKELKKYDEALFDKPRWLVLNKLDMVPEEERKKRVK 298
Query: 85 -FIK 87
FIK
Sbjct: 299 DFIK 302
>sp|Q58134|OGG1_METJA N-glycosylase/DNA lyase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=ogg PE=1 SV=1
Length = 207
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 54 KQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFI--KMPSDHYMEMSHIILDIGADDIPNV 111
++R + ++ + N++ + E E EK +R F+ + Y E SH + ++G DD+ +
Sbjct: 87 RKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAII 146
Query: 112 DLIRTLIKDIWD 123
D R +++++++
Sbjct: 147 D--RHILRELYE 156
>sp|A4G8R4|OBG_HERAR GTPase obg OS=Herminiimonas arsenicoxydans GN=obg PE=3 SV=1
Length = 369
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 26 LIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRF- 84
L+H++ D+ PF P K + LK+ + P W+ L L + EEE+K R
Sbjct: 241 LLHIV--DLAPFDNVDPVKEAKAIVKELKKYDESLFDKPRWLVLNKLDMVPEEERKKRVK 298
Query: 85 -FIK 87
FIK
Sbjct: 299 DFIK 302
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,679,497
Number of Sequences: 539616
Number of extensions: 2721721
Number of successful extensions: 7155
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7087
Number of HSP's gapped (non-prelim): 44
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)