Query psy647
Match_columns 190
No_of_seqs 105 out of 219
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 18:55:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e9x_B DNA replication complex 100.0 5.6E-67 1.9E-71 430.3 19.0 176 1-177 1-176 (185)
2 2e9x_C GINS complex subunit 3; 99.5 3.6E-14 1.2E-18 118.8 12.2 148 7-162 27-184 (219)
3 3anw_B GINS23, putative unchar 98.9 7.1E-09 2.4E-13 83.8 9.8 125 33-161 22-161 (171)
4 3anw_A GINS51, putative unchar 97.1 0.00098 3.4E-08 54.1 6.7 86 67-161 1-102 (188)
5 3anw_A GINS51, putative unchar 69.8 2.9 9.9E-05 33.4 2.9 42 20-62 142-184 (188)
6 2l9a_X LAK160-P12; cationic, p 53.3 5.1 0.00017 21.8 1.0 13 45-57 11-23 (26)
7 3iz6_S 40S ribosomal protein S 48.0 6.3 0.00022 30.6 1.2 39 49-99 21-63 (146)
8 3twe_A Alpha4H; unknown functi 39.2 31 0.0011 18.8 2.8 24 110-134 2-25 (27)
9 3fp5_A Acyl-COA binding protei 34.0 92 0.0031 22.5 5.6 78 34-123 21-105 (106)
10 2xzm_T RPS19E; ribosome, trans 32.2 6.5 0.00022 30.9 -1.0 39 49-99 22-64 (155)
11 3u5c_T 40S ribosomal protein S 31.6 17 0.00057 28.2 1.3 19 49-69 18-36 (144)
12 2v7f_A RPS19, RPS19E SSU ribos 25.1 23 0.00079 27.1 1.1 101 48-163 15-138 (150)
13 1zt2_A DNA primase small subun 24.4 41 0.0014 29.2 2.6 48 12-62 279-326 (330)
14 3sjd_D Golgi to ER traffic pro 24.2 43 0.0015 20.9 1.9 12 121-132 23-34 (46)
15 3arc_J Photosystem II reaction 22.2 21 0.00071 21.8 0.2 8 43-50 6-13 (40)
16 1pu1_A Hypothetical protein MT 21.7 75 0.0026 22.8 3.1 27 141-167 1-27 (94)
17 1m1e_B ICAT; cell adhesion, cy 21.0 2.2E+02 0.0074 19.8 5.4 51 113-172 6-56 (81)
No 1
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=100.00 E-value=5.6e-67 Score=430.29 Aligned_cols=176 Identities=50% Similarity=0.892 Sum_probs=169.5
Q ss_pred CCHHHHHHhhcCceEEEEecccccccccccccccCCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhh
Q psy647 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEK 80 (190)
Q Consensus 1 m~p~E~eFlaE~e~I~IvP~f~~~~~~~li~g~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E~ 80 (190)
|||+|+||+||+++|+|+|+|++ ++++||+|+||||+||.|++||||||++||++++|+|+||+||++++|++++++|+
T Consensus 1 ~~p~EieFlae~e~I~IvP~f~~-~~~~lI~g~~gPf~p~~~~~VPLWLAl~Lkk~~kc~I~~P~Wl~~e~L~~~~~~E~ 79 (185)
T 2e9x_B 1 MDAAEVEFLAEKELVTIIPNFSL-DKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHER 79 (185)
T ss_dssp CCHHHHHHHHTTSEEEEEESSCB-CCEEETTEEECCBCTTCCEEEEHHHHHHHHHTTSEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCeEEEEeCCCC-CceeeeecccCCcCCCCcceeHHHHHHHHHhCCceEEECCcccCHHHHHHHHHHHh
Confidence 89999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCceeeeCCCCHHHHHhhhHh
Q psy647 81 KSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNI 160 (190)
Q Consensus 81 ~~~~f~~LP~~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~~~~~l~nLt~~Ein~iR~f 160 (190)
+++.|++||++||+|+|++||++|+||++++++||++|+|||++|++|+|+|++.+.+.++.+++++|||+||+|++|+|
T Consensus 80 ~~~~f~~lP~~~~~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~vR~~Kir~~l~~l~~~~~~~~~l~nls~mEin~iR~f 159 (185)
T 2e9x_B 80 KEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTF 159 (185)
T ss_dssp HCSSCCCCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTCCHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCccHHHHHHhHHH
Confidence 98899999933799999999999999999999999999999999999999999998776788999999999999999999
Q ss_pred HHHHHHHHHhhhcccCc
Q psy647 161 LCDVLDTMSSLKDKQCD 177 (190)
Q Consensus 161 ~~~~~~~~~~l~~~~~~ 177 (190)
++++||++++|+++..+
T Consensus 160 ~~~~~~~l~~l~~~~~~ 176 (185)
T 2e9x_B 160 LTQALNHMYKLRTNLQP 176 (185)
T ss_dssp HHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHhccccc
Confidence 99999999999987755
No 2
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*
Probab=99.55 E-value=3.6e-14 Score=118.84 Aligned_cols=148 Identities=15% Similarity=0.193 Sum_probs=115.4
Q ss_pred HHhhcCceEEEEeccccccccc--cccc---cc-CC-CCCCCccchhHHHHHHh--cccCcceeeCCCCCCHHHHHHHHH
Q psy647 7 EFIAEDQNVEIIPKFNHLNLIH--LISG---DV-GP-FRAGIPAKVPLWLAINL--KQRQKCRLVLPTWMNLETLTEIKE 77 (190)
Q Consensus 7 eFlaE~e~I~IvP~f~~~~~~~--li~g---~~-gP-f~pg~~~~VPLWLAi~L--kk~~~C~I~~P~Wl~~~~L~~~~~ 77 (190)
.+||++|.|.++++... .++. ++++ .- .. ..+|.++++|||||..| .+++.|+|.+|+.++..+.+.+.+
T Consensus 27 dILa~~ekVpC~f~~~~-~~lG~~~Ld~~a~~~~~d~l~~G~kveLPlWLA~~L~~~~~~~v~i~~P~~y~~~~~~~L~A 105 (219)
T 2e9x_C 27 DILMSHEKLPVRTETAM-PRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSA 105 (219)
T ss_dssp HHHHTTSEEEEEESSCB-TTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSSSSEEECCCGGGSHHHHHHHHH
T ss_pred HHHhcCCeeeeEEeecC-CCCcHhhcCCccCCCCcccCCCCCEecchHHHHHHHHHhccCceEEeCchhhhHHHHHHHhc
Confidence 58999999999999999 9998 7777 33 45 99999999999999999 999999999999999998887777
Q ss_pred HhhccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCce-eeeCCCCHHHHHh
Q psy647 78 EEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGH-ATLNHLTQFEINS 156 (190)
Q Consensus 78 ~E~~~~~f~~LP~~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~~~-~~l~nLt~~Ein~ 156 (190)
+ -..-.+..+. +|||+++..|+..- . .+..++...+.+.+..|..+|.+...+. .++.. -.+.+|+.+|...
T Consensus 106 d-p~~VdL~~~~-p~fY~lG~~L~~l~--~-~ed~~L~~~L~~tf~~R~~~I~d~a~~~--~~~~~~~~~~~Ld~~Er~L 178 (219)
T 2e9x_C 106 D-PNVVDLHKMG-PHFYGFGSQLLHFD--S-PENADISQSLLQTFIGRFRRIMDSSQNA--YNEDTSALVARLDEMERGL 178 (219)
T ss_dssp C-GGGSCTTTSC-SSHHHHHHHGGGGC--C-TTHHHHHHHHHHHHHHHHHHHHHHHTTS--SCCCCHHHHTTCCHHHHHH
T ss_pred C-CcEEecccCC-chHHHHHHHHHhcc--c-cchHHHHHHHHHHHHHHHHHHHHHhccc--ccccHHHHHhcCCHHHHHH
Confidence 7 2233455555 79999999999872 1 1225788888899999999999876541 12222 2689999999999
Q ss_pred hhHhHH
Q psy647 157 IRNILC 162 (190)
Q Consensus 157 iR~f~~ 162 (190)
++..-.
T Consensus 179 f~~g~~ 184 (219)
T 2e9x_C 179 FQTGQK 184 (219)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 996654
No 3
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=98.90 E-value=7.1e-09 Score=83.81 Aligned_cols=125 Identities=16% Similarity=0.196 Sum_probs=92.9
Q ss_pred ccCCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHHhc--------C
Q psy647 33 DVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDI--------G 104 (190)
Q Consensus 33 ~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E~~~~~f~~LP~~~y~Eia~~Ll~~--------a 104 (190)
+||+.++|.-+.||.|+|..|...+.|.|.--.=-.++.|.+++.+|+++..+++|| ..||.=++..+.. .
T Consensus 22 ~f~~~~kG~e~~lp~wlA~~L~e~g~vei~d~~~~~I~eL~~il~eEr~~~~L~~LP-~dFY~rvr~yI~~Le~ei~~~~ 100 (171)
T 3anw_B 22 PFGDWKSGDIVLVEDWKARELWEAGVVEIVDETDKIIGEIDKVIAEERESEPLTLLP-EGLYERAEFYAYYLENYVRLNP 100 (171)
T ss_dssp CCTTCCSSCEEEEEHHHHHHHHHTTSEEECCTHHHHHHHHHHHHHHHTTSSSCCCCC-TTHHHHHHHHHHHHHHHTTCCC
T ss_pred hhhhcCCCCeeeccHHHHHHHHHCCCEeeccccchHHHHHHHHHHHhhccCccccCC-HHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999997411345889999999999999999999 5777777766541 1
Q ss_pred CCCCCC-------hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCceeeeCCCCHHHHHhhhHhH
Q psy647 105 ADDIPN-------VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNIL 161 (190)
Q Consensus 105 ~Ddi~~-------~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~~~~~l~nLt~~Ein~iR~f~ 161 (190)
..|+.. ...++..+++|.+.|..||-+.+.. . ..+.--+++||..|...+....
T Consensus 101 ~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~la~~--~-~~~~eil~rLTpEEk~iy~~l~ 161 (171)
T 3anw_B 101 RESVDTINVKLTKLANLRKKLRDLKLIRFNKILKAVML--R-PNSLELLSRLAPEERRIYLQMS 161 (171)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHTTSCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CCcHHHHhcCCHHHHHHHHHHH
Confidence 224322 3567777889999999999886521 1 2222248999999987766554
No 4
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=97.11 E-value=0.00098 Score=54.06 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHHhcC-------CC-CC--C------ChHHHHHHHHHHHHHHHHHHH
Q psy647 67 MNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIG-------AD-DI--P------NVDLIRTLIKDIWDLRISKLR 130 (190)
Q Consensus 67 l~~~~L~~~~~~E~~~~~f~~LP~~~y~Eia~~Ll~~a-------~D-di--~------~~~~ir~li~Di~~~R~~Klr 130 (190)
|+++.|.+++..|+++..++++| +.||+=+..++..- .| .. . ....++.+++.|+++|..||-
T Consensus 1 mdi~eL~~il~~Er~s~~L~~i~-~~FY~~v~~yI~~L~~~~~~~~~~~~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv 79 (188)
T 3anw_A 1 MDIVKLRELLEAELSSTDLNELD-EDFYVEFDSLIKALKLSAESSRERGEDVEERLYLAQLKIAESLMKEIIKLRLHKIV 79 (188)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCC-TTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcCCCCC-HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999 45554445544421 12 11 1 123488889999999999998
Q ss_pred hhHHHHHhcCCceeeeCCCCHHHHHhhhHhH
Q psy647 131 SSIDTFVKSGGGHATLNHLTQFEINSIRNIL 161 (190)
Q Consensus 131 ~~~~~~~~~~~~~~~l~nLt~~Ein~iR~f~ 161 (190)
...- .+ ..+|+|..|...+....
T Consensus 80 ~~a~----~~----~~~~Lt~EEk~l~~~l~ 102 (188)
T 3anw_A 80 DLAV----EG----KIAEMTAEEKRLFNVIR 102 (188)
T ss_dssp HHHH----HT----EECCCCHHHHHHHHHHH
T ss_pred HHHh----hh----hhhhCCHHHHHHHHHHH
Confidence 7651 12 47999999998887654
No 5
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=69.83 E-value=2.9 Score=33.40 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=32.6
Q ss_pred ccccccccccccc-ccCCCCCCCccchhHHHHHHhcccCcceee
Q psy647 20 KFNHLNLIHLISG-DVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62 (190)
Q Consensus 20 ~f~~~~~~~li~g-~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~ 62 (190)
..+. +.+.=.+| .||||++|.-|.+|-=.|..|.+++.+.-+
T Consensus 142 ~~d~-p~i~~~d~r~Y~Pl~~~Dvv~LP~~~A~~L~kr~~a~~i 184 (188)
T 3anw_A 142 QIDL-PAVLGPDMKEYGPFMAGDMAIIPTVIGRALVEREAARRV 184 (188)
T ss_dssp CSCB-CCEECTTSCEECCBCTTCEEEEEHHHHHHHHTTTSEEEC
T ss_pred EeCC-CceecCCcCcccCCCcccEEeecHHHHHHHHhCCCeEEe
Confidence 3344 44333334 799999999999999999999999987654
No 6
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=53.25 E-value=5.1 Score=21.84 Aligned_cols=13 Identities=46% Similarity=0.986 Sum_probs=10.7
Q ss_pred hhHHHHHHhcccC
Q psy647 45 VPLWLAINLKQRQ 57 (190)
Q Consensus 45 VPLWLAi~Lkk~~ 57 (190)
-|||-|+.||-++
T Consensus 11 aplwkalalklkk 23 (26)
T 2l9a_X 11 APLWKALALKLKK 23 (26)
T ss_dssp CTHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHh
Confidence 5999999988665
No 7
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=48.02 E-value=6.3 Score=30.65 Aligned_cols=39 Identities=26% Similarity=0.558 Sum_probs=26.7
Q ss_pred HHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCCCCC----ccHHHHHHH
Q psy647 49 LAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPS----DHYMEMSHI 99 (190)
Q Consensus 49 LAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E~~~~~f~~LP~----~~y~Eia~~ 99 (190)
+|..||+.+ .|.+|+|.+.- ++..+-++|+ ++|.-.|.+
T Consensus 21 ~A~~LK~~g--ki~~P~W~d~v----------KTg~~KEl~P~d~DW~Y~RaASi 63 (146)
T 3iz6_S 21 YSAHLKRSG--KMELPEWVDIV----------KTARFKELPPYDPDWYYTRAASI 63 (146)
T ss_dssp HHTTGGGSS--CCCCTTTGGGC----------CSSSSCSSSTHHHHTHHHHHHHH
T ss_pred HHHHHHHcC--CCCCCchHHHh----------hccccccCCCCCCchHHHHHHHH
Confidence 577898775 48999998653 2477778885 455554443
No 8
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=39.24 E-value=31 Score=18.83 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhHH
Q psy647 110 NVDLIRTLIKDIWDLRISKLRSSID 134 (190)
Q Consensus 110 ~~~~ir~li~Di~~~R~~Klr~~~~ 134 (190)
+++++-.-++|+.+ |..|+|..++
T Consensus 2 nadelykeledlqe-rlrklrkklr 25 (27)
T 3twe_A 2 NADELYKELEDLQE-RLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 35677777788765 6677777654
No 9
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=33.97 E-value=92 Score=22.49 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=52.9
Q ss_pred cCCCCCCCccchhHHHHHHhccc---CcceeeCCCCCCHHHHHHHHHHhhccCCCCCCCC----ccHHHHHHHHHhcCCC
Q psy647 34 VGPFRAGIPAKVPLWLAINLKQR---QKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPS----DHYMEMSHIILDIGAD 106 (190)
Q Consensus 34 ~gPf~pg~~~~VPLWLAi~Lkk~---~~C~I~~P~Wl~~~~L~~~~~~E~~~~~f~~LP~----~~y~Eia~~Ll~~a~D 106 (190)
-||++|+....+=|| .|.|| +-|++.-|.++++..-.+.-+= ..+..|+. ..|+++...|+.. ++
T Consensus 21 ~g~~~ps~~~~L~LY---alyKQAt~Gd~~~~~Pg~~d~~~raKw~AW----~~l~gmS~eeA~~~YI~~v~~l~~~-~~ 92 (106)
T 3fp5_A 21 DGPIKPTQDEQLYFY---KYFKQATVGDVNISRPGLMDFTGKAKWDAW----KSVEGTSKEVAYQKYVEKLLEILKK-AD 92 (106)
T ss_dssp SSSSCCCHHHHHHHH---HHHHHHHTCSCCSCCCCTTCHHHHHHHHHH----HTTTTCCHHHHHHHHHHHHHHHHHH-HC
T ss_pred ccCCCCCHHHHHHHH---HHHHHHhcCCCCCCCCCccchHHHHHHHHH----HHccCCCHHHHHHHHHHHHHHHhcc-cC
Confidence 367777776666554 23333 6799999999998776555544 44455542 5899999999888 33
Q ss_pred CCCChHHHHHHHHHHHH
Q psy647 107 DIPNVDLIRTLIKDIWD 123 (190)
Q Consensus 107 di~~~~~ir~li~Di~~ 123 (190)
+ .+.|.+|.+|..
T Consensus 93 ~----~~~~~~~~~le~ 105 (106)
T 3fp5_A 93 T----EESKKYIAEIEA 105 (106)
T ss_dssp S----HHHHHHHHHHHH
T ss_pred c----HHHHHHHHHHhc
Confidence 3 478888877753
No 10
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=32.20 E-value=6.5 Score=30.88 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=24.1
Q ss_pred HHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCCCCC----ccHHHHHHH
Q psy647 49 LAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPS----DHYMEMSHI 99 (190)
Q Consensus 49 LAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E~~~~~f~~LP~----~~y~Eia~~ 99 (190)
+|..||+.+ .|.+|+|.++- ++..+-+||+ ++|.-.|.+
T Consensus 22 ~A~~LKk~g--ki~~P~W~d~v----------KTg~~KElaP~d~DW~YiRaASi 64 (155)
T 2xzm_T 22 YASHLKKAN--KLSIPEFTQWT----------TTSVARELAPQDSDWVYIRTAAL 64 (155)
T ss_dssp HHHHTTSSC--CSCCCHHHHSC----------CCSSSCSSCCSSTTHHHHHHHHH
T ss_pred HHHHHHhcC--CCCCCchHhhh----------hccccccCCCCCCchHHHHHHHH
Confidence 688898666 48999996432 2356666663 345544443
No 11
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=31.64 E-value=17 Score=28.15 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=15.9
Q ss_pred HHHHhcccCcceeeCCCCCCH
Q psy647 49 LAINLKQRQKCRLVLPTWMNL 69 (190)
Q Consensus 49 LAi~Lkk~~~C~I~~P~Wl~~ 69 (190)
+|..||+.+ .|.+|+|.+.
T Consensus 18 ~A~~LK~~g--ki~~P~W~d~ 36 (144)
T 3u5c_T 18 YASFLQRQG--KLEVPGYVDI 36 (144)
T ss_dssp HHHHHHHHC--CCCCTTTTTS
T ss_pred HHHHHHHcC--CCCCCchHhH
Confidence 688899985 5899999875
No 12
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=25.08 E-value=23 Score=27.15 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=54.1
Q ss_pred HHHHHhcccCcceeeCCCCCCH---HHHHHHHHHhhccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH-
Q psy647 48 WLAINLKQRQKCRLVLPTWMNL---ETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWD- 123 (190)
Q Consensus 48 WLAi~Lkk~~~C~I~~P~Wl~~---~~L~~~~~~E~~~~~f~~LP~~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~- 123 (190)
=+|..||+.++ |.+|+|.+. ..-+++--. + |.+.|..++..|-..--+.-+.. + -+...+.
T Consensus 15 ~~a~~lk~~~k--i~~P~w~~~vKt~~~ke~~p~--------~-~~~~y~ria~~lr~~i~~g~~G~---~-~La~~~gg 79 (150)
T 2v7f_A 15 RVAQRLKEIPE--IKPPEWAPFVKTGRHKERLPE--------Q-EDWWYYRVASILRRVYLDGPVGI---E-RLRTYYGG 79 (150)
T ss_dssp HHHHHHTTCTT--CCCCSCGGGCCC------CHH--------H-HTHHHHHHHHHHHHHHHHCSBCH---H-HHHHHHCC
T ss_pred HHHHHHHhcCC--CCCcchhhhhcccccccCCCC--------C-cchHHHHHHHHHHHHHHhCCCCH---H-HHHHHHCC
Confidence 47888997765 788999987 222211110 0 11467777766554322222222 2 3445556
Q ss_pred -------------HHHHHHHhhHHHHHhc------CCceeeeCCCCHHHHHhhhHhHHH
Q psy647 124 -------------LRISKLRSSIDTFVKS------GGGHATLNHLTQFEINSIRNILCD 163 (190)
Q Consensus 124 -------------~R~~Klr~~~~~~~~~------~~~~~~l~nLt~~Ein~iR~f~~~ 163 (190)
+=..=+|..++.|.+. .+....++..+..++..+..-+..
T Consensus 80 ~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~~~~l~~ia~~i~~ 138 (150)
T 2v7f_A 80 RKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKK 138 (150)
T ss_dssp ----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHHH
T ss_pred CccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCCCceEECCCCHHHHHHHHHHHHH
Confidence 5556677777776542 223446666677777666655443
No 13
>1zt2_A DNA primase small subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: d.264.1.1
Probab=24.41 E-value=41 Score=29.19 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=39.0
Q ss_pred CceEEEEecccccccccccccccCCCCCCCccchhHHHHHHhcccCcceee
Q psy647 12 DQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62 (190)
Q Consensus 12 ~e~I~IvP~f~~~~~~~li~g~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~ 62 (190)
+..|.|.++... ++.+.+-.|+ ..+|.+.+||-..|+.|--++.+.+.
T Consensus 279 ~~~~~v~~~~~~--~~~~~g~~~~-~~~g~~~~~p~~~avyl~~~g~a~~~ 326 (330)
T 1zt2_A 279 TGYTIFLPYITI--ETEVLGSIIK-LNRGIPIKIKSSIGIYLHLRNLGEVK 326 (330)
T ss_dssp CSEEEEEESSCE--EEECSSSEEE-ECTTCCEEEEHHHHHHHHHTTSEEEE
T ss_pred CCceEEEEccce--eEEECCeEec-cCCCcceEecHHHHHHHHhcCcEEEE
Confidence 567888887755 5667766774 78999999999999999999988764
No 14
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=24.20 E-value=43 Score=20.93 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhh
Q psy647 121 IWDLRISKLRSS 132 (190)
Q Consensus 121 i~~~R~~Klr~~ 132 (190)
+++.|++|++.|
T Consensus 23 rRERR~aKi~~G 34 (46)
T 3sjd_D 23 LRERRQKKFSNG 34 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 578999999987
No 15
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=22.21 E-value=21 Score=21.76 Aligned_cols=8 Identities=38% Similarity=1.456 Sum_probs=6.0
Q ss_pred cchhHHHH
Q psy647 43 AKVPLWLA 50 (190)
Q Consensus 43 ~~VPLWLA 50 (190)
-++||||.
T Consensus 6 GRiPLWlv 13 (40)
T 3arc_J 6 GRIPLWIV 13 (40)
T ss_dssp TSSCHHHH
T ss_pred CcccEEee
Confidence 36899984
No 16
>1pu1_A Hypothetical protein MTH677; structural genomics, alpha and beta protein (A+B), unknown function; NMR {Methanothermobacterthermautotrophicus} SCOP: d.266.1.1
Probab=21.74 E-value=75 Score=22.77 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=22.3
Q ss_pred CceeeeCCCCHHHHHhhhHhHHHHHHH
Q psy647 141 GGHATLNHLTQFEINSIRNILCDVLDT 167 (190)
Q Consensus 141 ~~~~~l~nLt~~Ein~iR~f~~~~~~~ 167 (190)
++|+.|..||..|+.+|-.|+.++...
T Consensus 1 ~~h~~L~kLSe~eL~eIse~~~~~i~~ 27 (94)
T 1pu1_A 1 GSHMSLRKLTEGDLDEISSFLHNTISD 27 (94)
T ss_dssp ---CCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999988874
No 17
>1m1e_B ICAT; cell adhesion, cytoskeleton, armadillo repeats, transciption factor, structural protein; 2.10A {Homo sapiens} SCOP: a.161.1.1 PDB: 1luj_B 1t08_B
Probab=20.96 E-value=2.2e+02 Score=19.79 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhcCCceeeeCCCCHHHHHhhhHhHHHHHHHHHhhh
Q psy647 113 LIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172 (190)
Q Consensus 113 ~ir~li~Di~~~R~~Klr~~~~~~~~~~~~~~~l~nLt~~Ein~iR~f~~~~~~~~~~l~ 172 (190)
.+..+-+|.+..+.-.|...++++ + .+||..|.+.++.-...++..+.+..
T Consensus 6 klGKls~e~y~~QkvEILtALkKL---G------e~Ls~eE~~FL~~~~~~~ls~FekVs 56 (81)
T 1m1e_B 6 APGKSPEEMYIQQKVRVLLMLRKM---G------SNLTASEEEFLRTYAGVVNSQLSQLP 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHT---T------CCCCHHHHHHHHHTHHHHHHHHTC--
T ss_pred hcccccHHHHHHHHHHHHHHHHHh---c------ccCCHHHHHHHHHHhhhHHHHHHhcc
Confidence 455667788888888888777653 3 57999999999999999999998887
Done!