RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy647
(190 letters)
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA
replication; HET: DNA; 2.30A {Homo sapiens} SCOP:
a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Length = 185
Score = 210 bits (537), Expect = 2e-70
Identities = 89/175 (50%), Positives = 124/175 (70%), Gaps = 1/175 (0%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF G+P +VPLWLAINLKQRQKCR
Sbjct: 1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59
Query: 61 LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
L+ P WM++E L ++++ E+K F MPS +YME++ ++L+ +D+IP D IRTL+KD
Sbjct: 60 LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQ 175
+WD RI+KLR S D+FV+ HA L++LT EIN+ L L+ M L+
Sbjct: 120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNL 174
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA
replication, replication; 2.65A {Thermococcus
kodakarensis}
Length = 171
Score = 36.7 bits (84), Expect = 0.002
Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 21/153 (13%)
Query: 22 NHLNLIHLISG----------DVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLET 71
N+ H+ +G G +++G V W A L + +V T +
Sbjct: 1 NYFQGSHMFTGKALIAVKVMKPFGDWKSGDIVLVEDWKARELWEAGVVEIVDETDKIIGE 60
Query: 72 LTEIKEEEKKSRFFIKMPSDHYMEMSHIIL----DIGADDIPNVDLIRT-------LIKD 120
+ ++ EE++S +P Y + + +VD I L K
Sbjct: 61 IDKVIAEERESEPLTLLPEGLYERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKK 120
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFE 153
+ DL++ + + + L+ L E
Sbjct: 121 LRDLKLIRFNKILKAVMLRPNSLELLSRLAPEE 153
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 30.4 bits (69), Expect = 0.32
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+ +F+ E I+ +F+H N+I L
Sbjct: 86 TEKQRRDFLGE---ASIMGQFDHPNIIRLE 112
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase;
HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB:
2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A*
3bz3_A* 2jko_A* 2jkk_A*
Length = 281
Score = 30.3 bits (69), Expect = 0.33
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
D +F+ E + +F+H +++ LI
Sbjct: 56 SDSVREKFLQE---ALTMRQFDHPHIVKLI 82
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 30.3 bits (69), Expect = 0.34
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
P EF E + + H N++ L+
Sbjct: 52 EGPLREEFRHE---AMLRARLQHPNVVCLL 78
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 30.0 bits (68), Expect = 0.42
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+ ++F+ E I+ +F+H N+I L
Sbjct: 86 TEKQRVDFLGE---AGIMGQFSHHNIIRLE 112
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 29.9 bits (68), Expect = 0.48
Identities = 4/30 (13%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
A E + E ++ ++ ++ L+
Sbjct: 57 SPKANKEILDE---AYVMASVDNPHVCRLL 83
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC,
ATP-binding, membrane; 1.60A {Homo sapiens} PDB:
3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 29.5 bits (67), Expect = 0.55
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+ +F++E I+ +H +++ LI
Sbjct: 53 TLDNKEKFMSE---AVIMKNLDHPHIVKLI 79
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 29.2 bits (66), Expect = 0.66
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+ +F++E I+ +F+H N+I L
Sbjct: 90 TERQRRDFLSE---ASIMGQFDHPNIIRLE 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.66
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 27/116 (23%)
Query: 21 FNHLNLIHLI----SGDVGPFRAGIPAKVPL---WLAINLKQRQKCRLVLPTWMNLETLT 73
++H+ HL + FR V L +L QK R W ++
Sbjct: 474 YSHIGH-HLKNIEHPERMTLFR-----MVFLDFRFL------EQKIRHDSTAWNASGSIL 521
Query: 74 EIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNV--DLIRTLIKDIWDLRIS 127
++ K + +I Y + + ILD +P + +LI + D+ LRI+
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDF----LPKIEENLICSKYTDL--LRIA 571
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding,
transferase; HET: VGH; 1.70A {Homo sapiens} PDB:
2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A*
2xb7_A*
Length = 327
Score = 28.8 bits (65), Expect = 1.0
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+ E++F+ E II KFNH N++ I
Sbjct: 73 SEQDELDFLME---ALIISKFNHQNIVRCI 99
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 28.7 bits (64), Expect = 1.2
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
D +F+ E + +F+H +++ LI
Sbjct: 431 SDSVREKFLQE---ALTMRQFDHPHIVKLI 457
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 28.4 bits (64), Expect = 1.4
Identities = 5/30 (16%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+ +F E ++ +F++ N++ L+
Sbjct: 90 SADMQADFQRE---AALMAEFDNPNIVKLL 116
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 28.1 bits (63), Expect = 1.6
Identities = 4/30 (13%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
A E + E ++ ++ ++ L+
Sbjct: 57 SPKANKEILDE---AYVMASVDNPHVCRLL 83
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 28.1 bits (63), Expect = 1.6
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+ E++F+ E II KFNH N++ I
Sbjct: 114 SEQDELDFLME---ALIISKFNHQNIVRCI 140
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase,
protein kinase, transferase; HET: SEP TPO ANP; 2.20A
{Arabidopsis thaliana} PDB: 3tl8_A*
Length = 326
Score = 27.9 bits (63), Expect = 2.0
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 5 EIEFIAEDQNVEIIPKFNHLNLIHLI 30
E++F E VE+I H NL+ L
Sbjct: 71 ELQFQTE---VEMISMAVHRNLLRLR 93
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor
complex; HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 28.0 bits (63), Expect = 2.0
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 2 DPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
A +F E E++ H +++
Sbjct: 58 LAARKDFQRE---AELLTNLQHEHIVKFY 83
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 27.6 bits (62), Expect = 2.6
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 2 DPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+ A +F E E++ H +++
Sbjct: 84 ESARQDFQRE---AELLTMLQHQHIVRFF 109
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 27.2 bits (61), Expect = 3.1
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+ +F+ E I+ +++H N++ LI
Sbjct: 152 PPDLKAKFLQE---ARILKQYSHPNIVRLI 178
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A
{Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D*
2q9q_D*
Length = 219
Score = 27.0 bits (59), Expect = 3.4
Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 7 EFIAEDQNVEIIPKFNHLNLIHLI------SGDVGPFRAGIPAKVPLWLAINLK--QRQK 58
+ + + + + + L + G ++PLWLA L +R+
Sbjct: 27 DILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRI 86
Query: 59 CRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLI 118
+ LP T + P H+ +L + + N D+ ++L+
Sbjct: 87 LSVELPKIYQEGWRTVFSADPNVVDLHKMGP--HFYGFGSQLLHFDSPE--NADISQSLL 142
Query: 119 K 119
+
Sbjct: 143 Q 143
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A
{Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A*
2x2m_A* 2ivv_A*
Length = 314
Score = 27.2 bits (61), Expect = 3.8
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+ ++E ++ + NH ++I L
Sbjct: 66 SPSELRDLLSE---FNVLKQVNHPHVIKLY 92
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase;
glutathione, KGST, kappa GST, transferase; HET: GSH TOM
CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Length = 203
Score = 26.9 bits (60), Expect = 4.0
Identities = 12/117 (10%), Positives = 36/117 (30%), Gaps = 23/117 (19%)
Query: 6 IEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPT 65
+ +A+D + I L + + G+VGP + K+
Sbjct: 21 LSKLAQDYGLTIRYNAIDLARVKIAIGNVGPSNRDLKVKL-------------------D 61
Query: 66 WMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIW 122
++ +++ + + P+++ +I + + + +W
Sbjct: 62 YL----KVDLQRWAQLYGIPLVFPANYNSRRMNIGFYYSGAEAQAAAYVNVVFNAVW 114
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA
methyltransferase RSRI, D binding, DNA modification, DNA
methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides}
SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Length = 319
Score = 27.1 bits (60), Expect = 4.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 132 SIDTFVKSGGGHATLNHLTQFEINSIRN--ILCDVLDTMSSLKDKQCDVDVT 181
+++ KSG H++ + L EI + R+ +CD LDT++ L D + +
Sbjct: 13 AMNALRKSGQKHSSESQLGSSEIGTTRHVYDVCDCLDTLAKLPDDSVQLIIC 64
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 26.5 bits (59), Expect = 6.0
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
IEF+ E ++ +FN +++ L+
Sbjct: 68 SMRERIEFLNE---ASVMKEFNCHHVVRLL 94
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex,
layered beta- sheets, transferas; HET: SEP TPO; 3.20A
{Solanum pimpinellifolium} PDB: 3hgk_A*
Length = 321
Score = 26.4 bits (59), Expect = 7.0
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 7 EFIAEDQNVEIIPKFNHLNLIHLI 30
EF E +E + H +L+ LI
Sbjct: 81 EFETE---IETLSFCRHPHLVSLI 101
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 26.0 bits (58), Expect = 7.8
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 4 AEIEFIAEDQNVEIIPKFNHLNLIHLI 30
+E EFI E +++ +H L+ L
Sbjct: 62 SEDEFIEE---AKVMMNLSHEKLVQLY 85
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A*
3vf9_A*
Length = 291
Score = 25.7 bits (57), Expect = 9.2
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 1 MDPAEI-EFIAEDQNVEIIPKFNHLNLIHLI 30
DPA E +AE ++ + ++ ++ +I
Sbjct: 57 NDPALKDELLAE---ANVMQQLDNPYIVRMI 84
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 25.6 bits (57), Expect = 9.3
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLI 30
M + FI E E++ K +H L+ L
Sbjct: 45 MSEED--FIEE---AEVMMKLSHPKLVQLY 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.404
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,876,380
Number of extensions: 165759
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 42
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)