BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6471
(635 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 4/228 (1%)
Query: 95 SESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQR 154
+E Q R EY +L L WMR TA ++R FPS+ E++ L + +F+ E+P ++
Sbjct: 7 NELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEA 66
Query: 155 DKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDR 214
DK R + I+Q L + G++ + P H +E+ W +L A E++ L+ E +RL+
Sbjct: 67 DKNRSKGIYQSLEGAVQ-AGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEA 125
Query: 215 LQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENIN 274
LQR+ K+ E + +L + ++ + + R L +E DL +A+ I
Sbjct: 126 LQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLA---AGKVPQRAGEVERDLDKADSMIR 182
Query: 275 TLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLAS 322
LF+DVQTL++GR+PQ +++RV +LH+R VA+R+ + RL + +A+
Sbjct: 183 LLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGVAA 230
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin
Length = 235
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 4/228 (1%)
Query: 95 SESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQR 154
+E Q R EY +L L WMR TA ++R FPS+ E++ L + +F+ E+P ++
Sbjct: 7 NELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEA 66
Query: 155 DKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDR 214
DK R + I+Q L + G++ + P H +E+ W +L A E++ L+ E +RL+
Sbjct: 67 DKNRSKGIYQSLEGAVQ-AGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEC 125
Query: 215 LQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENIN 274
LQR+ K+ E + +L + ++ + + R L +E DL +A+ I
Sbjct: 126 LQRIVTKLQMEAGLCEEQLNQADALLQSDVRLLA---AGKVPQRAGEVERDLDKADSMIR 182
Query: 275 TLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLAS 322
LF+DVQTL++GR+PQ +++RV +LH+R VA+R+ + RL + +A+
Sbjct: 183 LLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGVAA 230
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 18/269 (6%)
Query: 62 VDTHEIDEKSIITYISSLYDVFPEPPAVHPL---------YDSESQQRVNEYCDLASSLH 112
V T DEK+I+TY+SS Y F + E++Q + +Y LAS L
Sbjct: 204 VGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLL 263
Query: 113 LWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFED 172
W+R ++++R +T+ M++ D +R PP+ ++K +L+ F L
Sbjct: 264 EWIRRTIPWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRL 323
Query: 173 VGEVDIDPE--LHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREM---- 226
P + I W L A + + L +EI+RL+RL LAEK ++
Sbjct: 324 SNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHE 383
Query: 227 KRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREG 286
DG+ L+ + E A L + L KH + E DL ++ + + + Q L E
Sbjct: 384 SWTDGKEAMLQQKDYETA-TLSEIKALLKKH--EAFESDLAAHQDRVEQIAAIAQELNEL 440
Query: 287 RYPQASDLHKRVQKLHQRWVALRSLLHSR 315
Y + ++ R QK+ +W L +L R
Sbjct: 441 DYYDSPSVNARCQKICDQWDNLGALTQKR 469
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 9/228 (3%)
Query: 94 DSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQ 153
+ E+++ + EY LAS L W+R ++++R T+ M+K D +R + PP+
Sbjct: 6 NQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKV 65
Query: 154 RDKQRLQHIFQDLTKYFEDVGEVDIDPE--LHIDVIERNWSRLLAAHQEKDSILQDEIKR 211
++K +L+ F L P + I W RL A + + L +EI+R
Sbjct: 66 QEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRR 125
Query: 212 LDRLQRLAEKVTREMKRVD----GRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLR 267
L+RL+ LAEK ++ + G+ E++ + + E+ L + L KH + E DL
Sbjct: 126 LERLEHLAEKFRQKASTHETWAYGK-EQILLQKDYESASLTEVRALLRKH--EAFESDLA 182
Query: 268 QAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSR 315
++ + + + Q L E Y A +++ R QK+ +W L +L R
Sbjct: 183 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKR 230
>pdb|3R6N|A Chain A, Crystal Structure Of A Rigid Four Spectrin Repeat Fragment
Of The Human Desmoplakin Plakin Domain
pdb|3R6N|B Chain B, Crystal Structure Of A Rigid Four Spectrin Repeat Fragment
Of The Human Desmoplakin Plakin Domain
Length = 450
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 557 MSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSXXXXXXXXXXCLETHLKHA 616
MS LE +E + + ++ + L+L HPA+ IEAYM +Q+ C++ HLK
Sbjct: 139 MSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKEN 198
Query: 617 AYYHQFWREMKDAETWI 633
A Y QF+ E + E ++
Sbjct: 199 AAYFQFFEEAQSTEAYL 215
>pdb|3PE0|A Chain A, Structure Of The Central Region Of The Plakin Domain Of
Plectin
pdb|3PE0|B Chain B, Structure Of The Central Region Of The Plakin Domain Of
Plectin
Length = 283
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 556 LMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSXXXXXXXXXXCLETHLKH 615
LM +LE +E + +Q+ G+ L+ + HPA +E++ AA+Q+ C+E HLK
Sbjct: 53 LMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKE 112
Query: 616 AAYYHQFWREMKDAETWINK 635
A Y QF+ ++++AE + K
Sbjct: 113 NAAYFQFFSDVREAEGQLQK 132
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 10/221 (4%)
Query: 97 SQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDK 156
S+Q ++Y A+ L W+ +K A ++ R+F ++ ++ ++ E PP+ ++
Sbjct: 764 SEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEV 823
Query: 157 QRLQHIFQDL-TKYFEDVGEVDIDPE-LHIDVIERNWSRLLAAHQEKDSILQDEIKRLDR 214
L+ I+ L TK E + P L + I+ WS L A QE L+ E+KR +
Sbjct: 824 SELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK 883
Query: 215 LQRLAEKVTREMKRVD--GRLEELESRINEEARRLDRLHPLDAK-HNVDVLEHDLRQAEE 271
+ L +K R +K+++ + + NE D + + AK N++ + + + E
Sbjct: 884 IAVLLQKYNRILKKLENWATTKSVYLGSNETG---DSITAVQAKLKNLEAFDGECQSLEG 940
Query: 272 NINT-LFSDVQTLREGRYPQASDLHKRVQKLH-QRWVALRS 310
N+ L S + L E Y +L +R Q+W ++S
Sbjct: 941 QSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKS 981
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 10/221 (4%)
Query: 97 SQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDK 156
S+Q ++Y A+ L W+ +K A ++ R+F ++ ++ ++ E PP+ ++
Sbjct: 756 SEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEV 815
Query: 157 QRLQHIFQDL-TKYFEDVGEVDIDPE-LHIDVIERNWSRLLAAHQEKDSILQDEIKRLDR 214
L+ I+ L TK E + P L + I+ WS L A QE L+ E+KR +
Sbjct: 816 SELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK 875
Query: 215 LQRLAEKVTREMKRVD--GRLEELESRINEEARRLDRLHPLDAK-HNVDVLEHDLRQAEE 271
+ L +K R +K+++ + + NE D + + AK N++ + + + E
Sbjct: 876 IAVLLQKYNRILKKLENWATTKSVYLGSNETG---DSITAVQAKLKNLEAFDGECQSLEG 932
Query: 272 NINT-LFSDVQTLREGRYPQASDLHKRVQKLH-QRWVALRS 310
N+ L S + L E Y +L +R Q+W ++S
Sbjct: 933 QSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKS 973
>pdb|2IAK|A Chain A, Crystal Structure Of A Protease Resistant Fragment Of The
Plakin Domain Of Bullous Pemphigoid Antigen1 (Bpag1)
Length = 224
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 556 LMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSXXXXXXXXXXCLETHLK 614
LM +LE++E AVQ+ E L+L++HPA IEAY AAMQ+ C+E H++
Sbjct: 165 LMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQ 223
>pdb|3PDY|A Chain A, Structure Of The Third And Fourth Spectrin Repeats Of The
Plakin Domain Of Plectin
pdb|3PDY|B Chain B, Structure Of The Third And Fourth Spectrin Repeats Of The
Plakin Domain Of Plectin
Length = 210
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 556 LMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSXXXXXXXXXXCLETHLK 614
LM +LE +E + +Q+ G+ L+ + HPA +E++ AA+Q+ C+E HLK
Sbjct: 150 LMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLK 208
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 349 NTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEI----AIHQREQNIIAQIQEA 401
++ R LQ+ + WV+ ++ A++G DL V+A++ +HQ + A+I+ A
Sbjct: 8 DSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERA 64
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPEPPA 88
DVD + DEKSIITY+SSLYD P P
Sbjct: 214 DVDVPQPDEKSIITYVSSLYDAMPRVPG 241
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPEPP 87
DVD + DEKSIITY+SSLYD P P
Sbjct: 270 DVDVPQPDEKSIITYVSSLYDAMPRVP 296
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPEPP 87
DVD + DEKSIITY+SSLYD P P
Sbjct: 217 DVDVPQPDEKSIITYVSSLYDAMPRVP 243
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPEPPAV 89
DVDT D+KSI+ YI+SL+ V P+ ++
Sbjct: 217 DVDTTYPDKKSILMYITSLFQVLPQQVSI 245
>pdb|1QUU|A Chain A, Crystal Structure Of Two Central Spectrin-Like Repeats
From Alpha-Actinin
Length = 250
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 207 DEIKRLDRLQRLAEKVTREMKRVD----GRLEELESRINEEARRLDRLHPLDAKHNVDVL 262
+EI+RL+RL+ LAEK ++ + G+ E++ + + E+ L + L KH +
Sbjct: 4 NEIRRLERLEHLAEKFRQKASTHETWAYGK-EQILLQKDYESASLTEVRALLRKH--EAF 60
Query: 263 EHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSR 315
E DL ++ + + + Q L E Y A +++ R QK+ +W L +L R
Sbjct: 61 ESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKR 113
>pdb|3LBX|B Chain B, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 185
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 533 PRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYM 592
PRD+ S+E L+ H+ + +++E R FSA + GE+L+ + H A++ I +
Sbjct: 33 PRDVSSVELLMKYHQ-------GINAEIETRSKNFSACLELGESLLQRQHQASEEIREKL 85
Query: 593 AAMQSXXXXXXXXXXCLETHLKHAAYYHQFWREMKDAETWI 633
+ S L+ QF R+ AE W+
Sbjct: 86 QQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWL 126
>pdb|2KX6|A Chain A, Signaling State Of Photoactive Yellow Protein
Length = 130
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 536 LDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPA 584
L S+EH+ +D E+TL M D + + F A+Q G+ ILQ++ A
Sbjct: 3 LGSMEHVAFGSEDIENTLAK-MDDGQLDGLAFGAIQLDGDGNILQYNAA 50
>pdb|3U0C|A Chain A, Crystal Structure Of N-Terminal Region Of Type Iii
Secretion First Translocator Ipab (Residues 74-224)
pdb|3U0C|B Chain B, Crystal Structure Of N-Terminal Region Of Type Iii
Secretion First Translocator Ipab (Residues 74-224)
Length = 201
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 191 WSRLLAAHQEKDSILQDEIKRL----DRLQRLAEKVTREMKRVDGRLEELESRINEEARR 246
W A Q+K+ D+I L + L R EK ++K D ++++LE++IN+ R
Sbjct: 80 WKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTR 139
Query: 247 LDRLHP 252
L L P
Sbjct: 140 LSELDP 145
>pdb|3JQH|A Chain A, Structure Of The Neck Region Of The Glycan-Binding
Receptor Dc-Signr
Length = 167
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 155 DKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDR 214
+K +LQ I+Q+LT+ VGE+ +L I + +RL AA E+ +
Sbjct: 5 EKSKLQEIYQELTRLKAAVGELPEKSKLQ--EIYQELTRLKAAV--------GELPEKSK 54
Query: 215 LQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVL--EHDLRQAEEN 272
LQ + +++TR +K G L E +S++ E + L RL K V L + L++ +
Sbjct: 55 LQEIYQELTR-LKAAVGELPE-KSKLQEIYQELTRL-----KAAVGELPEKSKLQEIYQE 107
Query: 273 INTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSL 311
+ L + V G P+ S L + Q+L Q A+ L
Sbjct: 108 LTELKAAV-----GELPEKSKLQEIYQELTQLKAAVGEL 141
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 221 KVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLR-QAEENINTLFSD 279
K+T+E K ++ R+ +L + + EE + L L KH + E ++R + EE
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Query: 280 VQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSR 315
++ EG ++SDLH+++ +L + L++ L +
Sbjct: 1061 IKRKLEG---ESSDLHEQIAELQAQIAELKAQLAKK 1093
>pdb|2WLC|A Chain A, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLE|A Chain A, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLE|B Chain B, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLE|C Chain C, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLF|A Chain A, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLF|B Chain B, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLF|C Chain C, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLG|A Chain A, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLG|B Chain B, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLG|C Chain C, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLD|A Chain A, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLD|B Chain B, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
pdb|2WLD|C Chain C, Crystallographic Analysis Of The Polysialic Acid O-
Acetyltransferase Oatwy
Length = 215
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 89 VHPLYDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLI 132
+HP+Y E+ +R+N D+ H+W+ ++ P+ ++
Sbjct: 120 MHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVV 163
>pdb|1OTD|A Chain A, Strong Hydrogen Bonds In Photoactive Yellow Protein And
Their Role In Its Photocycle
pdb|1OTD|B Chain B, Strong Hydrogen Bonds In Photoactive Yellow Protein And
Their Role In Its Photocycle
Length = 125
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 539 LEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPA 584
+EH+ +D E+TL M D + + F A+Q G+ ILQ++ A
Sbjct: 1 MEHVAFGSEDIENTLAK-MDDSQLDNLAFGAIQLDGDGTILQYNAA 45
>pdb|1U5P|A Chain A, Crystal Structure Of Repeats 15 And 16 Of Chicken Brain
Alpha Spectrin
Length = 216
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQ----------AEIAIHQ 389
FR + + W+K K + DYG DL GVQ AE+A H+
Sbjct: 115 FRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 162
>pdb|2XZR|A Chain A, Escherichia Coli Immunoglobulin-Binding Protein Eibd
391-438 Fused To Gcn4 Adaptors
Length = 114
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 158 RLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQR 217
++ HI ++ + + +G +D + IE+N S+ +AA+ LQ RLD QR
Sbjct: 14 KIYHIENEIARIKKLIGAIDGRVTRNTQSIEKN-SKAIAAN---TRTLQQHSARLDSQQR 69
Query: 218 LAEKVTREMKRVDGRLEELESRI----NEEAR 245
+ +EMK+++ ++EE+ S+I NE AR
Sbjct: 70 QINENHKEMKQIEDKIEEILSKIYHIENEIAR 101
>pdb|3P0A|A Chain A, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|B Chain B, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|C Chain C, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|D Chain D, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|E Chain E, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|F Chain F, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|G Chain G, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|H Chain H, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|I Chain I, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|J Chain J, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|K Chain K, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|L Chain L, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|M Chain M, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|N Chain N, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|O Chain O, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|P Chain P, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|Q Chain Q, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|R Chain R, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|S Chain S, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|T Chain T, X-Ray Structure Of Pentameric Hiv-1 Ca
Length = 231
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 233 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292
++ L+ INEEA DRLHP+ H + +R E + + TL+E
Sbjct: 66 MQMLKETINEEAAEWDRLHPV---HAGPIAPGQMR--EPRGSDIAGTTSTLQEQIGWMTH 120
Query: 293 DLHKRVQKLHQRWVALRSLLHSRLVSP 319
+ V ++++RW+ L R+ SP
Sbjct: 121 NPPIPVGEIYKRWIILGLNKIVRMYSP 147
>pdb|1U4Q|A Chain A, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
Brain Alpha Spectrin
pdb|1U4Q|B Chain B, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
Brain Alpha Spectrin
Length = 322
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQ----------AEIAIHQ 389
FR + + W+K K + DYG DL GVQ AE+A H+
Sbjct: 115 FRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 162
>pdb|3P05|A Chain A, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|B Chain B, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|C Chain C, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|D Chain D, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|E Chain E, X-Ray Structure Of Pentameric Hiv-1 Ca
Length = 231
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 233 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292
++ L+ INEEA DRLHP+ H + +R E + + TL+E
Sbjct: 66 MQMLKETINEEAAEWDRLHPV---HAGPIAPGQMR--EPRGSDIAGTTSTLQEQIGWMTH 120
Query: 293 DLHKRVQKLHQRWVALRSLLHSRLVSP 319
+ V ++++RW+ L R+ SP
Sbjct: 121 NPPIPVGEIYKRWIILGLNKIVRMYSP 147
>pdb|3H47|A Chain A, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|A Chain A, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|B Chain B, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|C Chain C, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|D Chain D, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|E Chain E, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|F Chain F, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|G Chain G, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|H Chain H, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|I Chain I, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|J Chain J, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|K Chain K, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|L Chain L, X-Ray Structure Of Hexameric Hiv-1 Ca
Length = 231
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 233 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292
++ L+ INEEA DRLHP+ H + +R E + + TL+E
Sbjct: 66 MQMLKETINEEAAEWDRLHPV---HAGPIAPGQMR--EPRGSDIAGTTSTLQEQIGWMTH 120
Query: 293 DLHKRVQKLHQRWVALRSLLHSRLVSP 319
+ V ++++RW+ L R+ SP
Sbjct: 121 NPPIPVGEIYKRWIILGLNKIVRMYSP 147
>pdb|3GV2|A Chain A, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|B Chain B, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|C Chain C, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|D Chain D, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|E Chain E, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|F Chain F, X-Ray Structure Of Hexameric Hiv-1 Ca
Length = 342
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 233 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292
++ L+ INEEA DRLHP+ H + +R E + + TL+E
Sbjct: 66 MQMLKETINEEAAEWDRLHPV---HAGPIAPGQMR--EPRGSDIAGTTSTLQEQIGWMTH 120
Query: 293 DLHKRVQKLHQRWVALRSLLHSRLVSP 319
+ V ++++RW+ L R+ SP
Sbjct: 121 NPPIPVGEIYKRWIILGLNKIVRMYSP 147
>pdb|3MGE|A Chain A, X-Ray Structure Of Hexameric Hiv-1 Ca
Length = 231
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 233 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292
++ L+ INEEA DRLHP+ H + +R E + + TL+E
Sbjct: 66 MQMLKETINEEAAEWDRLHPV---HAGPIAPGQMR--EPRGSDIAGTTSTLQEQIGWMTH 120
Query: 293 DLHKRVQKLHQRWVALRSLLHSRLVSP 319
+ V ++++RW+ L R+ SP
Sbjct: 121 NPPIPVGEIYKRWIILGLNKIVRMYSP 147
>pdb|3NTE|A Chain A, Crystal Structure Of The Wild-Type Full-Length Hiv-1
Capsid Protein
pdb|3NTE|B Chain B, Crystal Structure Of The Wild-Type Full-Length Hiv-1
Capsid Protein
Length = 221
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 233 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292
++ L+ INEEA DR+HP+ H + +R E + + TL+E +
Sbjct: 66 MQMLKETINEEAAEWDRVHPV---HAGPIAPGQMR--EPRGSDIAGTTSTLQEQIGWMTN 120
Query: 293 DLHKRVQKLHQRWVALRSLLHSRLVSP 319
+ V ++++RW+ L R+ SP
Sbjct: 121 NPPIPVGEIYKRWIILGLNKIVRMYSP 147
>pdb|3TZO|A Chain A, The Role Of I87 Of Cyp158a2 In Oxidative Coupling Reaction
pdb|3TZO|B Chain B, The Role Of I87 Of Cyp158a2 In Oxidative Coupling Reaction
Length = 410
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 428 HTRVEHCIAAKFLAMGAAQ-RNAIRKALNEDADKLLEEGDPSD 469
HTR+ +AA F A G + R R L+E D +L G P+D
Sbjct: 101 HTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPAD 143
>pdb|3DIK|A Chain A, Pseudo-Atomic Model Of The Hiv-1 Ca Hexameric Lattice
Length = 219
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 233 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292
++ L+ INEEA DRLHP+ H + +R E + + TL+E
Sbjct: 66 MQMLKETINEEAAEWDRLHPV---HAGPIAPGQMR--EPRGSDIAGTTSTLQEQIGWMTH 120
Query: 293 DLHKRVQKLHQRWVALRSLLHSRLVSP 319
+ V ++++RW+ L R+ SP
Sbjct: 121 NPPIPVGEIYKRWIILGLNKIVRMYSP 147
>pdb|3TNK|A Chain A, Crystal Structure Of Mutant I87r In Cyp158a2
pdb|3TNK|B Chain B, Crystal Structure Of Mutant I87r In Cyp158a2
Length = 407
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 428 HTRVEHCIAAKFLAMGAAQ-RNAIRKALNEDADKLLEEGDPSD 469
HTR+ +AA F A G + R R L+E D +L G P+D
Sbjct: 101 HTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPAD 143
>pdb|2D0E|A Chain A, Substrate Assited In Oxygen Activation In Cytochrome P450
158a2
Length = 407
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 428 HTRVEHCIAAKFLAMGAAQ-RNAIRKALNEDADKLLEEGDPSD 469
HTR+ +AA F A G + R R L+E D +L G P+D
Sbjct: 101 HTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPAD 143
>pdb|1T93|A Chain A, Evidence For Multiple Substrate Recognition And Molecular
Mechanism Of C-C Reaction By Cytochrome P450 Cyp158a2
From Streptomyces Coelicolor A3(2)
Length = 406
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 428 HTRVEHCIAAKFLAMGAAQ-RNAIRKALNEDADKLLEEGDPSD 469
HTR+ +AA F A G + R R L+E D +L G P+D
Sbjct: 101 HTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPAD 143
>pdb|1SE6|A Chain A, Crystal Structure Of Streptomyces Coelicolor A3(2)
Cyp158a2 From Antibiotic Biosynthetic Pathways
pdb|1SE6|B Chain B, Crystal Structure Of Streptomyces Coelicolor A3(2)
Cyp158a2 From Antibiotic Biosynthetic Pathways
Length = 406
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 428 HTRVEHCIAAKFLAMGAAQ-RNAIRKALNEDADKLLEEGDPSD 469
HTR+ +AA F A G + R R L+E D +L G P+D
Sbjct: 101 HTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPAD 143
>pdb|2LF4|A Chain A, Structure Of A Monomeric Mutant Of The Hiv-1 Capsid
Protein
Length = 240
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 233 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292
++ L+ INEEA DRLHP+ H + +R E + + TL+E
Sbjct: 67 MQMLKETINEEAAEWDRLHPV---HAGPIAPGQMR--EPRGSDIAGTTSTLQEQIGWMTH 121
Query: 293 DLHKRVQKLHQRWVALRSLLHSRLVSP 319
+ V ++++RW+ L R+ SP
Sbjct: 122 NPPIPVGEIYKRWIILGLNKIVRMYSP 148
>pdb|1S1F|A Chain A, Crystal Structure Of Streptomyces Coelicolor A3(2)
Cyp158a2 From Antibiotic Biosynthetic Pathways
Length = 406
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 428 HTRVEHCIAAKFLAMGAAQ-RNAIRKALNEDADKLLEEGDPSD 469
HTR+ +AA F A G + R R L+E D +L G P+D
Sbjct: 101 HTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPAD 143
>pdb|2D09|A Chain A, A Role For Active Site Water Molecules And Hydroxyl Groups
Of Substrate For Oxygen Activation In Cytochrome P450
158a2
Length = 407
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 428 HTRVEHCIAAKFLAMGAAQ-RNAIRKALNEDADKLLEEGDPSD 469
HTR+ +AA F A G + R R L+E D +L G P+D
Sbjct: 101 HTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPAD 143
>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|B Chain B, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|C Chain C, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
Length = 213
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQ----------AEIAIHQ 389
FR + + W+K K + DYG DL GVQ AE+A H+
Sbjct: 6 FRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 53
>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20
Structures
Length = 110
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQ----------AEIAIHQ 389
FR + + W+K K + DYG DL GVQ AE+A H+
Sbjct: 13 FRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 60
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human
Spectrin Beta Chain, Brain 2
Length = 127
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPEPPAV 89
DV+ + DEKSIITY+++ Y F + A+
Sbjct: 88 DVNVDQPDEKSIITYVATYYHYFSKMKAL 116
>pdb|1L6N|A Chain A, Structure Of The N-Terminal 283-Residue Fragment Of The
Hiv- 1 Gag Polyprotein
Length = 289
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 233 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292
++ L+ INEEA DRLHP+ H + +R E + + TL+E
Sbjct: 198 MQMLKETINEEAAEWDRLHPV---HAGPIAPGQMR--EPRGSDIAGTTSTLQEQIGWMTH 252
Query: 293 DLHKRVQKLHQRWVALRSLLHSRLVSP 319
+ V ++++RW+ L R+ SP
Sbjct: 253 NPPIPVGEIYKRWIILGLNKIVRMYSP 279
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 130 TLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGE 175
++I ++ +A RF E P R +++ L I +D+ + F+ +GE
Sbjct: 198 SIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAIGE 243
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|F Chain F, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|J Chain J, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 69
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 148 EVPPRQRDKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERN 190
EV R ++ +L+ +LT+ F D+ E+ I+ + ++DVI++N
Sbjct: 4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKN 46
>pdb|2IBL|A Chain A, Crystal Structure Of A Helper Molecule (Ht-Mf-Thromb)
Based On Mini- Fibritin (Mf) Crystal Structure
(Pdb:1ox3)
Length = 130
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 258 NVDVLEHDLRQAEENINTLFSDVQTLREGRY-PQASDLHKRVQKLHQRWVALRSLLHS 314
NV+VL+ ++ + ++ T SD++T++E Y P+A + + WV L + L S
Sbjct: 65 NVEVLDKNIGILKTSLETANSDIKTIQEAGYIPEAPRDGQAYVRKDGEWVLLSTFLGS 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,694,595
Number of Sequences: 62578
Number of extensions: 622267
Number of successful extensions: 1960
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1879
Number of HSP's gapped (non-prelim): 116
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)