Query psy6471
Match_columns 635
No_of_seqs 274 out of 1590
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 18:59:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 100.0 4E-106 8E-111 901.4 48.7 538 13-635 172-754 (2473)
2 KOG0517|consensus 100.0 1.6E-44 3.5E-49 406.9 58.2 490 98-635 414-968 (2473)
3 KOG0040|consensus 100.0 3E-38 6.6E-43 349.8 40.9 439 96-634 41-484 (2399)
4 KOG0040|consensus 100.0 6.1E-35 1.3E-39 323.8 41.8 436 101-635 151-591 (2399)
5 KOG0035|consensus 100.0 1.3E-31 2.8E-36 295.4 5.2 306 13-318 147-496 (890)
6 cd00176 SPEC Spectrin repeats, 99.8 9E-16 1.9E-20 150.3 27.8 206 349-616 3-212 (213)
7 cd00176 SPEC Spectrin repeats, 99.6 3.2E-13 6.9E-18 132.2 25.3 207 220-501 3-211 (213)
8 smart00150 SPEC Spectrin repea 99.5 9E-13 1.9E-17 113.0 13.0 100 505-614 2-101 (101)
9 COG5069 SAC6 Ca2+-binding acti 99.4 7.7E-14 1.7E-18 142.9 3.4 182 13-196 130-355 (612)
10 PF00435 Spectrin: Spectrin re 99.4 1.4E-11 3E-16 106.2 14.5 103 503-615 3-105 (105)
11 KOG4286|consensus 99.3 8.6E-10 1.9E-14 118.8 29.0 319 220-618 4-336 (966)
12 smart00150 SPEC Spectrin repea 99.1 6.9E-10 1.5E-14 94.9 9.9 96 221-317 2-98 (101)
13 PF00435 Spectrin: Spectrin re 99.0 7.1E-09 1.5E-13 89.1 11.8 97 219-316 3-100 (105)
14 KOG4286|consensus 98.5 0.00013 2.8E-09 79.8 28.5 122 186-314 75-217 (966)
15 cd00014 CH Calponin homology d 97.0 3.2E-05 7E-10 66.9 -4.1 70 14-84 7-107 (107)
16 KOG0516|consensus 96.9 0.17 3.8E-06 61.6 24.6 139 482-631 179-318 (1047)
17 KOG4240|consensus 96.7 0.033 7.2E-07 64.6 15.6 147 470-624 241-390 (1025)
18 KOG0035|consensus 96.6 0.00045 9.7E-09 78.6 -0.9 271 13-313 426-723 (890)
19 smart00033 CH Calponin homolog 96.5 5.3E-05 1.1E-09 65.0 -6.8 65 14-78 6-102 (103)
20 PF00307 CH: Calponin homology 96.3 0.00025 5.3E-09 61.4 -3.8 69 15-84 6-108 (108)
21 PF08580 KAR9: Yeast cortical 73.5 1.9E+02 0.004 33.7 31.3 118 473-607 238-362 (683)
22 PF11971 CAMSAP_CH: CAMSAP CH 69.8 1.2 2.5E-05 36.7 -0.6 20 21-40 5-25 (85)
23 KOG4240|consensus 67.9 2.8E+02 0.006 33.5 28.8 133 183-316 242-376 (1025)
24 PF06008 Laminin_I: Laminin Do 66.4 1.5E+02 0.0033 29.9 20.3 89 480-580 163-252 (264)
25 PF08317 Spc7: Spc7 kinetochor 56.1 2.6E+02 0.0057 29.2 26.0 83 20-124 7-93 (325)
26 KOG0994|consensus 56.0 4.6E+02 0.01 32.1 39.7 128 183-314 1161-1292(1758)
27 TIGR00606 rad50 rad50. This fa 53.8 5.7E+02 0.012 32.5 41.7 52 475-526 914-966 (1311)
28 PF05531 NPV_P10: Nucleopolyhe 44.0 1.7E+02 0.0036 23.5 7.9 53 261-314 8-60 (75)
29 PHA03395 p10 fibrous body prot 38.7 1.9E+02 0.0041 23.8 7.1 53 261-314 8-60 (87)
30 PF03993 DUF349: Domain of Unk 35.6 2.1E+02 0.0045 22.4 7.3 48 554-603 23-70 (77)
31 PF06160 EzrA: Septation ring 25.8 1E+03 0.022 27.0 42.0 93 480-573 285-380 (560)
32 PF12325 TMF_TATA_bd: TATA ele 24.8 4.8E+02 0.01 23.0 9.1 79 532-617 11-102 (120)
33 PF09726 Macoilin: Transmembra 23.9 1.2E+03 0.026 27.3 20.5 68 537-604 538-608 (697)
34 PF10046 BLOC1_2: Biogenesis o 23.7 4.4E+02 0.0096 22.1 8.7 52 474-525 46-97 (99)
35 PF12491 ApoB100_C: Apolipopro 22.9 3.4E+02 0.0073 20.4 7.8 46 475-520 6-52 (58)
36 smart00787 Spc7 Spc7 kinetocho 21.4 9.3E+02 0.02 25.0 25.0 82 23-124 6-88 (312)
37 PF12126 DUF3583: Protein of u 21.3 9E+02 0.019 24.8 16.6 118 194-315 36-161 (324)
38 PF04136 Sec34: Sec34-like fam 20.8 6.7E+02 0.014 23.1 9.1 36 536-579 104-139 (157)
39 TIGR02449 conserved hypothetic 20.2 3.8E+02 0.0082 20.9 5.7 49 539-594 9-57 (65)
No 1
>KOG0517|consensus
Probab=100.00 E-value=3.9e-106 Score=901.43 Aligned_cols=538 Identities=25% Similarity=0.394 Sum_probs=501.4
Q ss_pred ccccccccCCCCCCcccccC-CCCccCCC-------------CccCCCCCCc------cCCCC--------CCCccccCC
Q psy6471 13 GLIVPKSKREGRQGVSSSQF-CSVRDTAS-------------RLTSSGDPNP------SFSLT--------NVKWNDVDT 64 (635)
Q Consensus 13 ~~~~~~~~t~~y~~v~i~~f-~sw~dG~a-------------~~~~~~~~~~------~~~~~--------~l~~ed~~~ 64 (635)
-|||||+||+|||||||+|| |||||||| ||++|.|+|+ +||+| +||||||++
T Consensus 172 LLLWCQmKTAGYpnVNI~nFTtSWRdGLaFNALIHkHRPDLvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLDpEDV~v 251 (2473)
T KOG0517|consen 172 LLLWCQMKTAGYPNVNITNFTTSWRDGLAFNALIHKHRPDLVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLDPEDVNV 251 (2473)
T ss_pred HHHHHHhhccCCCCcccccCccchhcchhHHHHHHhcCcchhhhcccCCCchhhHHHHHHHHHHHHcCchhcCCHhhcCc
Confidence 48999999999999999999 99999999 9999998885 66666 599999999
Q ss_pred CCCCcchhHhhhhhhhccCCCCCC-------CCCcc--chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHH
Q psy6471 65 HEIDEKSIITYISSLYDVFPEPPA-------VHPLY--DSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMK 135 (635)
Q Consensus 65 ~~pd~~sv~tyv~~~~~~~~~~~~-------~~~~~--~~e~~~~~~~y~~~~~~Ll~WI~~~~~~l~~~~~~~sl~~vq 135 (635)
..||+|||||||+.|||||++++. |++|+ .+|+++|+.+|+.++++||.||..++..+++++|||||+|||
T Consensus 252 ~~PDEKSIITYV~~YYHyFsKmK~~~v~gKRIgkVl~~lme~ekm~~~YE~LasdLL~WI~~ti~~L~~R~f~NSL~Gvq 331 (2473)
T KOG0517|consen 252 EQPDEKSIITYVVTYYHYFSKMKQLAVEGKRIGKVLDQLMETEKMIEQYEGLASDLLEWIEQTIQTLESRKFPNSLEGVQ 331 (2473)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHH
Confidence 999999999999999999999875 45665 679999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccCCChhHHHHHHHHHHHHHHHHHHHhcCC-CcCCC-CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy6471 136 KLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGE-VDIDP-ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLD 213 (635)
Q Consensus 136 ~~l~~~~~f~~~E~~~~~~ek~~le~l~~~l~~~~~~~~~-~~~~~-~~~~~~i~~~W~~L~~~~~~r~~~L~~el~rle 213 (635)
+++..|+.||+.||||++++||++|+++++|+++++++++ ++.|+ |+.+.|||++|..|+.++++|+.+|++|+.|++
T Consensus 332 qqL~aF~~yRT~EKPPKf~EKG~lEvLlFtiQsklrA~Nqk~y~P~eG~li~DInkAW~~LE~AEheRe~ALr~ELiRQE 411 (2473)
T KOG0517|consen 332 QQLAAFNTYRTVEKPPKFQEKGNLEVLLFTIQSKLRANNQKPYTPREGKLISDINKAWERLEKAEHERELALRAELIRQE 411 (2473)
T ss_pred HHHHHHHhhhcccCCCccccccchHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 67777 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChh
Q psy6471 214 RLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292 (635)
Q Consensus 214 ~l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkkh~~le~di~a~~~~v~~l~~~a~~L~~~~~~~~~ 292 (635)
+|++||.+|.+++...+.||++++..++.+++|. ++++|++ +|||++|++||.++++||+.|.++|+.|..++|++..
T Consensus 412 KLEqLA~RFdrKAamREtwL~enqrlvsqdnfg~-~LaaVEAa~KKheAIetDI~AyeeRvqal~ava~eL~~E~YHd~~ 490 (2473)
T KOG0517|consen 412 KLEQLARRFDRKAAMRETWLKENQRLVSQDNFGY-DLAAVEAALKKHEAIETDILAYEERVQALVAVADELEAENYHDIK 490 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 9999999999999999999999999999999996 8999997 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCccccCCccchhhhhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhc
Q psy6471 293 DLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEA 372 (635)
Q Consensus 293 ~I~~r~~~L~~~w~~L~~~~~~R~~~l~~~l~~~~~~~~~~L~~~~~~le~~~~~~~~f~~~~~e~~~Wl~e~~~~l~s~ 372 (635)
.|..|.++|..+|..|.+++..|+.+ |+.+ ..+++.|++|..+++||+|++..+.|.
T Consensus 491 rV~~r~~~V~~~W~~Ll~lL~arR~r----------------------L~~~-~~Lqklfqem~~~~d~meElk~~l~S~ 547 (2473)
T KOG0517|consen 491 RVAARKDNVLRLWTYLLELLEARRQR----------------------LEQM-LALQKLFQEMLYTSDWMEELKQQLLSR 547 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999743 3333 378999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHhHHHHHHHHHHHhhhccCChhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccHHHHHHHHH
Q psy6471 373 DYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRK 452 (635)
Q Consensus 373 ~~g~dl~~ve~ll~~h~~~~~~~~~~~~~~~~~~l~~v~~~l~~h~~~~~~i~q~~~~l~~~~~~~~~~~g~~~~~~~~~ 452 (635)
+||++|.+|+.||++|. .+++.| .+.|+. ++
T Consensus 548 d~GkHL~gVedLLQkH~----------------------------------------LlEadI----n~~ger-----v~ 578 (2473)
T KOG0517|consen 548 DVGKHLLGVEDLLQKHD----------------------------------------LLEADI----NAQGER-----VK 578 (2473)
T ss_pred HHHHHHhhHHHHHHhhh----------------------------------------hHHhHH----HHHHHH-----HH
Confidence 99999999999998885 111111 133444 57
Q ss_pred HHHHHHHHhhh--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHhHHHHHHHhhcc
Q psy6471 453 ALNEDADKLLE--EGDPSDPQLRRLRREMDEVNRLFDEFERRAR-AEEDMKNA--TKLFTEKASNLQSKLDEAERTLHSR 527 (635)
Q Consensus 453 ~L~~~a~~l~~--~~~~~~~~~~~I~~~~~~L~~~~~~L~~~~~-R~~~Le~~--L~~F~~~~~e~~~Wl~eke~~l~s~ 527 (635)
.++..|..|.. ++.+|+|++ |..++..|...|++|+++|. |+..||++ |++|+.+++++++||.||+.++++.
T Consensus 579 ~~~a~a~~f~~~~~~~~cdp~v--i~~R~~~le~~y~eL~~laa~RRarLE~sr~l~~F~~d~~EeEaWlkEkeqi~~sa 656 (2473)
T KOG0517|consen 579 ALNAQALRFDSPKEYKPCDPQV--IQERVAHLEQCYQELVELAAARRARLEESRRLWQFLWDVEEEEAWLKEKEQILSSA 656 (2473)
T ss_pred HHHHHHhhcCCCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 78888888876 466778754 99999999999999999999 99999987 7999999999999999999999997
Q ss_pred cCCCCCCChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy6471 528 INAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLAL 607 (635)
Q Consensus 528 ~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~~h~~~~~I~~~l~~L~~~W~~L~~~~~ 607 (635)
+ +|+|+++|-.++.||++|+. ||.++.+.+..+...|+.|+..|||+++.|..|+..++.+|+.|..+++
T Consensus 657 ~---~g~DLs~v~~ll~kHKalE~-------E~~~~~a~~~~~~~~G~~Lvae~~pg~~~i~~R~~~i~~~W~~L~~l~~ 726 (2473)
T KOG0517|consen 657 D---TGRDLSSVLRLLQKHKALED-------EMRGRDAHLKQMIREGEELVAEGHPGSDQIQERAAEIREQWQRLEALVA 726 (2473)
T ss_pred c---ccccHHHHHHHHHHHHHHHH-------HHhcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7 59999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy6471 608 CLETHLKHAAYYHQFWREMKDAETWINK 635 (635)
Q Consensus 608 ~R~~~L~~a~~~~qf~~~~~e~~~Wl~e 635 (635)
.|+++|++|..++|||.|++++++||++
T Consensus 727 ~r~~rL~~A~~~~QffaDAdd~~sWl~d 754 (2473)
T KOG0517|consen 727 GRGRRLQEARELYQFFADADDAESWLRD 754 (2473)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999999999974
No 2
>KOG0517|consensus
Probab=100.00 E-value=1.6e-44 Score=406.85 Aligned_cols=490 Identities=21% Similarity=0.303 Sum_probs=398.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy6471 98 QQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVD 177 (635)
Q Consensus 98 ~~~~~~y~~~~~~Ll~WI~~~~~~l~~~~~~~sl~~vq~~l~~~~~f~~~E~~~~~~ek~~le~l~~~l~~~~~~~~~~~ 177 (635)
+.+...|.+-+.=-..|+.+....++...||.++..|...+.+|....+ .+-+.+.....+.++...+. +++--.
T Consensus 414 EqLA~RFdrKAamREtwL~enqrlvsqdnfg~~LaaVEAa~KKheAIet-DI~AyeeRvqal~ava~eL~----~E~YHd 488 (2473)
T KOG0517|consen 414 EQLARRFDRKAAMRETWLKENQRLVSQDNFGYDLAAVEAALKKHEAIET-DILAYEERVQALVAVADELE----AENYHD 488 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHH----Hhccch
Confidence 3455677777777778888888888888888888888887777776654 44444333333333333332 222100
Q ss_pred CCC-CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-
Q psy6471 178 IDP-ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA- 255 (635)
Q Consensus 178 ~~~-~~~~~~i~~~W~~L~~~~~~r~~~L~~el~rle~l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~- 255 (635)
+.- ..+.++|...|..|......|+. ||+.+..| ++..+++..+.+||.+++..+.+.++|+ -+-.|+-
T Consensus 489 ~~rV~~r~~~V~~~W~~Ll~lL~arR~-------rL~~~~~L-qklfqem~~~~d~meElk~~l~S~d~Gk-HL~gVedL 559 (2473)
T KOG0517|consen 489 IKRVAARKDNVLRLWTYLLELLEARRQ-------RLEQMLAL-QKLFQEMLYTSDWMEELKQQLLSRDVGK-HLLGVEDL 559 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhhHHHH
Confidence 000 15788999999999999999999 88888888 8899999999999999999999999996 4444553
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC--CChhhHHHHHHHHHHHHHHHHHHHHhcccCccccCCccchhhhh
Q psy6471 256 KHNVDVLEHDLRQAEENINTLFSDVQTLREG-RY--PQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERT 332 (635)
Q Consensus 256 lkkh~~le~di~a~~~~v~~l~~~a~~L~~~-~~--~~~~~I~~r~~~L~~~w~~L~~~~~~R~~~l~~~l~~~~~~~~~ 332 (635)
++||..+++||.++-++|..+++.+..+.+. +| .+++-|..|+++|...|+.|+.++..|| +
T Consensus 560 LQkH~LlEadIn~~gerv~~~~a~a~~f~~~~~~~~cdp~vi~~R~~~le~~y~eL~~laa~RR---------------a 624 (2473)
T KOG0517|consen 560 LQKHDLLEADINAQGERVKALNAQALRFDSPKEYKPCDPQVIQERVAHLEQCYQELVELAAARR---------------A 624 (2473)
T ss_pred HHhhhhHHhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H
Confidence 8999999999999999999999999999983 33 4888999999999999999999999995 6
Q ss_pred hhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHHhHHHH-----------HHHHH----
Q psy6471 333 VTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQ-----------NIIAQ---- 397 (635)
Q Consensus 333 ~L~~~~~~le~~~~~~~~f~~~~~e~~~Wl~e~~~~l~s~~~g~dl~~ve~ll~~h~~~~-----------~~~~~---- 397 (635)
.|+++| .+|+|+.++++.++||.|++.++++.++|+||.+|-.++.+|++++ .++..
T Consensus 625 rLE~sr--------~l~~F~~d~~EeEaWlkEkeqi~~sa~~g~DLs~v~~ll~kHKalE~E~~~~~a~~~~~~~~G~~L 696 (2473)
T KOG0517|consen 625 RLEESR--------RLWQFLWDVEEEEAWLKEKEQILSSADTGRDLSSVLRLLQKHKALEDEMRGRDAHLKQMIREGEEL 696 (2473)
T ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 888987 4699999999999999999999999999999999999999999862 22222
Q ss_pred HHhhhccCC-----hhh----------HHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHhccH--------------
Q psy6471 398 IQEADYGSD-----LQG----------VQAEIAIHQREQNIIEQFHTRVEHCI----AAKFLAMGA-------------- 444 (635)
Q Consensus 398 ~~~~~~~~~-----l~~----------v~~~l~~h~~~~~~i~q~~~~l~~~~----~~~~~~~g~-------------- 444 (635)
+.+++||++ +.. +-+.++..+.....++||+.+.+++. +....++++
T Consensus 697 vae~~pg~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~~~~QffaDAdd~~sWl~d~~rlvss~d~G~DE~saq~Llk 776 (2473)
T KOG0517|consen 697 VAEGHPGSDQIQERAAEIREQWQRLEALVAGRGRRLQEARELYQFFADADDAESWLRDALRLVSSEDVGHDEASAQALLK 776 (2473)
T ss_pred HhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccchhcCCchHHHHHHHH
Confidence 678899987 222 33335677888899999998766543 223333322
Q ss_pred ------HHHHHH---HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHH
Q psy6471 445 ------AQRNAI---RKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRAR-AEEDMKNA--TKLFTEKASN 512 (635)
Q Consensus 445 ------~~~~~~---~~~L~~~a~~l~~~~~~~~~~~~~I~~~~~~L~~~~~~L~~~~~-R~~~Le~~--L~~F~~~~~e 512 (635)
++..+| +..|+.++..|... .+..|++.....++..+.+.|.+|.+++. |++.|+++ |+.|+++|+.
T Consensus 777 rH~~l~~El~a~~~~i~~L~eQa~~l~~~-~~e~p~V~~~~~R~~~i~q~Y~El~~lA~lRrq~L~dalaLy~~~se~d~ 855 (2473)
T KOG0517|consen 777 RHRDLEEELRAYRGDIDRLEEQASALPQE-SPEGPEVRQPLQRQDTISQDYEELQELAQLRRQRLEDALALYGFYSECDA 855 (2473)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccc-cCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 122233 47788888888654 34445544445699999999999999999 99999987 6999999999
Q ss_pred HHHhHHHHHHHhhcccCCCCCCChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy6471 513 LQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYM 592 (635)
Q Consensus 513 ~~~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~~h~~~~~I~~~l 592 (635)
++.||.||+..|.....+|.+.|++.+++ +|++|..||++...++..|+..+++|+..|||.+++|..+.
T Consensus 856 ~ElWi~Eke~~L~~m~~~~~~E~vev~q~----------rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q 925 (2473)
T KOG0517|consen 856 CELWIKEKEKWLATMSPPDSLEDVEVMQH----------RFEKLEQEMNTLAGRVAEVNDIARQLLEVGHPNSDEILARQ 925 (2473)
T ss_pred HHHHHHHHHHHHhccCCCCChhHHHHHHH----------HHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 99999999999998665556777777777 88889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy6471 593 AAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK 635 (635)
Q Consensus 593 ~~L~~~W~~L~~~~~~R~~~L~~a~~~~qf~~~~~e~~~Wl~e 635 (635)
+.|+.+|+.|..++.+|+..|..++.++.|..+|.++..||++
T Consensus 926 ~~Ln~rW~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~d 968 (2473)
T KOG0517|consen 926 DKLNQRWQQLRELVDQKKVALESALRVETFHLECEETRVWIRD 968 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999974
No 3
>KOG0040|consensus
Probab=100.00 E-value=3e-38 Score=349.79 Aligned_cols=439 Identities=19% Similarity=0.333 Sum_probs=374.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHHHHHhcCC
Q psy6471 96 ESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGE 175 (635)
Q Consensus 96 e~~~~~~~y~~~~~~Ll~WI~~~~~~l~~~~~~~sl~~vq~~l~~~~~f~~~E~~~~~~ek~~le~l~~~l~~~~~~~~~ 175 (635)
|-....+-|.++|.+|..||.++...+++..|. +++.+|.++.+|..|.. |..++......++. +.+..+ ..|+
T Consensus 41 eds~~~q~fkrdadel~~wi~ekl~~~~~~~y~-dptnlq~k~qkhqa~ea-evqa~s~~i~~ld~---t~~~~~-~~~h 114 (2399)
T KOG0040|consen 41 EDSYRFQYFKRDADELEKWIMEKLQIASDESYR-DPTNLQGKIQKHQAFEA-EVQAHSRAIVELDK---TGNEMI-TMGH 114 (2399)
T ss_pred HHhHHHHHHhcCHHHHHHHHHHHHHhhhhcccC-CchhHHHHHHHHHHHHH-HHHHhhhHHHHHHh---HHHHHH-hccc
Confidence 445677888999999999999999999988774 46788999999999965 55555444333332 222222 3455
Q ss_pred CcCCC-CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhh
Q psy6471 176 VDIDP-ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLD 254 (635)
Q Consensus 176 ~~~~~-~~~~~~i~~~W~~L~~~~~~r~~~L~~el~rle~l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve 254 (635)
..... ..++.++...|+.|.....+.+. +|.+.+.+ .+|.+.|+++..|+.+++..+.+++.|. ++..|+
T Consensus 115 ~a~e~~~~~l~el~~lw~~l~~~~~ekg~-------kl~~al~~-~q~~~~c~~i~~wi~dke~~~t~~e~g~-d~e~~e 185 (2399)
T KOG0040|consen 115 FASEEIKARLEELHHLWDLLLEKLLEKGI-------KLLQALKL-VQYLRECEDILEWIGDKEAIVTSEELGQ-DLEHVE 185 (2399)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHH-HHHHHHHHHHHHHhccchheeeHHHhcc-cHHHHH
Confidence 32211 36899999999999999999888 45566666 8999999999999999999999999994 889999
Q ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhcccCccccCCccchhhhhh
Q psy6471 255 A-KHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTV 333 (635)
Q Consensus 255 ~-lkkh~~le~di~a~~~~v~~l~~~a~~L~~~~~~~~~~I~~r~~~L~~~w~~L~~~~~~R~~~l~~~l~~~~~~~~~~ 333 (635)
. .+|++.|+.++.+++.||..+++.|.+|++.+||+-+.|+.+.++|+..|+.|..++..|...|-+
T Consensus 186 vl~~kf~~f~~~~~~~e~rv~evnq~a~~~~~e~h~e~~~i~~k~~evn~aw~rl~~la~~rq~~l~~------------ 253 (2399)
T KOG0040|consen 186 VLQKKFEDFQKELAAHEYRVNEVNQYADKLVEEGHPELDLIQKKQDEVNAAWQRLKGLALQRQEKLFG------------ 253 (2399)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHcCCCchHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc------------
Confidence 8 789999999999999999999999999999999999999999999999999999999999753221
Q ss_pred hhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHHhHHHHHHHHHHHhhhccCChhhHHHH
Q psy6471 334 TRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAE 413 (635)
Q Consensus 334 L~~~~~~le~~~~~~~~f~~~~~e~~~Wl~e~~~~l~s~~~g~dl~~ve~ll~~h~~~~~~~~~~~~~~~~~~l~~v~~~ 413 (635)
..+++.|.+|+++..+||.|+...|+|.|||+||.+|+.|..+|.+.
T Consensus 254 -----------a~~~qrf~rd~~et~~wi~ek~~~l~sddygrdl~~~q~l~~~h~g~---------------------- 300 (2399)
T KOG0040|consen 254 -----------AAEVQRFNRDVDETIAWIKEKEPVLSSDDYGRDLASVQALQRKHEGL---------------------- 300 (2399)
T ss_pred -----------HHHHHHhcccHHHHHHHHhhccccccccccchhHHHHHHHHHhccch----------------------
Confidence 12678999999999999999999999999999999999999888642
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy6471 414 IAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRA 493 (635)
Q Consensus 414 l~~h~~~~~~i~q~~~~l~~~~~~~~~~~g~~~~~~~~~~L~~~a~~l~~~~~~~~~~~~~I~~~~~~L~~~~~~L~~~~ 493 (635)
.+++..+... +..|...|.+|... +|.+ +..|+.+...+...|+.+..++
T Consensus 301 -------erdla~l~~k--------------------v~~l~~~a~~l~~~-hp~~--a~qi~~~~~~~~~~w~~~~~~a 350 (2399)
T KOG0040|consen 301 -------ERDLAALEDK--------------------VKELCAEAEKLTLS-HPDD--APQIQEKKEDLVSSWEHIRTLA 350 (2399)
T ss_pred -------hhhHHHHHHH--------------------HHHHHHHHHHHHhc-CCCc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 2332222222 34566666776543 3332 3459999999999999999999
Q ss_pred H-HHHHHHHH--HHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH
Q psy6471 494 R-AEEDMKNA--TKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAV 570 (635)
Q Consensus 494 ~-R~~~Le~~--L~~F~~~~~e~~~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v 570 (635)
. |...|+++ ++.|..+..++.+|++++...+...+ ...|+...+.++..|+.|.. +|+++..+++..
T Consensus 351 ~~r~~~l~~s~~~hrf~ad~rdL~~w~~~~~aaInade---l~~dvag~e~lL~~hqEhK~-------eIds~~dSf~~~ 420 (2399)
T KOG0040|consen 351 TERKEKLQASYWLHRFLADFRDLSSWINEMKAAINADE---LAKDVAGAEALLDRHQEHKG-------EIDAREDSFKSA 420 (2399)
T ss_pred HHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHcCchh---hHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHhhh
Confidence 9 99999887 59999999999999999999998876 47899999999999999988 999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6471 571 QDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWIN 634 (635)
Q Consensus 571 ~~~g~~L~~~~h~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~L~~a~~~~qf~~~~~e~~~Wl~ 634 (635)
...|+.|+..+|+++++|+.++..+..-|..|..+++.|+.....++.++-|++|..++..||.
T Consensus 421 ~~~gq~l~~~~~~as~ev~ekl~~le~e~~~ll~lwe~r~~~yeqcmd~~lfyrdteq~d~wms 484 (2399)
T KOG0040|consen 421 DESGQKLVEAGHYASDEVREKLEILDNEKSALLELWEERRIQYEQCMDLQLFYRDTEQVDTWMS 484 (2399)
T ss_pred ccccHHHHHccccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 4
>KOG0040|consensus
Probab=100.00 E-value=6.1e-35 Score=323.75 Aligned_cols=436 Identities=18% Similarity=0.309 Sum_probs=372.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Q psy6471 101 VNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVDIDP 180 (635)
Q Consensus 101 ~~~y~~~~~~Ll~WI~~~~~~l~~~~~~~sl~~vq~~l~~~~~f~~~E~~~~~~ek~~le~l~~~l~~~~~~~~~~~~~~ 180 (635)
...|-+.|.+++.||.+++...++..+|.+++.|.-+..+|..|.. +...+.....++.. ...++...|++..|.
T Consensus 151 ~~q~~~~c~~i~~wi~dke~~~t~~e~g~d~e~~evl~~kf~~f~~-~~~~~e~rv~evnq----~a~~~~~e~h~e~~~ 225 (2399)
T KOG0040|consen 151 LVQYLRECEDILEWIGDKEAIVTSEELGQDLEHVEVLQKKFEDFQK-ELAAHEYRVNEVNQ----YADKLVEEGHPELDL 225 (2399)
T ss_pred HHHHHHHHHHHHHHhccchheeeHHHhcccHHHHHHHHHHHHHHHH-HHHhhhHhHHHHHH----HHHHHHHcCCCchHH
Confidence 3589999999999999999999999999999999999999999986 66555544333332 233455678765544
Q ss_pred -CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhh
Q psy6471 181 -ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHN 258 (635)
Q Consensus 181 -~~~~~~i~~~W~~L~~~~~~r~~~L~~el~rle~l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkk 258 (635)
..+.+++|.+|..|....-.|+.. |-..-.+ ++|.|++++...|+.+++..+++++||. ++.++++ +++
T Consensus 226 i~~k~~evn~aw~rl~~la~~rq~~-------l~~a~~~-qrf~rd~~et~~wi~ek~~~l~sddygr-dl~~~q~l~~~ 296 (2399)
T KOG0040|consen 226 IQKKQDEVNAAWQRLKGLALQRQEK-------LFGAAEV-QRFNRDVDETIAWIKEKEPVLSSDDYGR-DLASVQALQRK 296 (2399)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHh-------hccHHHH-HHhcccHHHHHHHHhhccccccccccch-hHHHHHHHHHh
Confidence 367899999999999988888874 3344555 8999999999999999999999999997 7999998 799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhcccCccccCCccchhhhhhhhhhh
Q psy6471 259 VDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTR 338 (635)
Q Consensus 259 h~~le~di~a~~~~v~~l~~~a~~L~~~~~~~~~~I~~r~~~L~~~w~~L~~~~~~R~~~l~~~l~~~~~~~~~~L~~~~ 338 (635)
|+.++.|+++.++.|..|.+.|.+|......+++.|+.+.+++...|+.|..++..|.. .|.++.
T Consensus 297 h~g~erdla~l~~kv~~l~~~a~~l~~~hp~~a~qi~~~~~~~~~~w~~~~~~a~~r~~---------------~l~~s~ 361 (2399)
T KOG0040|consen 297 HEGLERDLAALEDKVKELCAEAEKLTLSHPDDAPQIQEKKEDLVSSWEHIRTLATERKE---------------KLQASY 361 (2399)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HhhhHH
Confidence 99999999999999999999999998887778999999999999999999999999953 444442
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHHhHHHHHHHHHHHhhhccCChhhHHHHHHHHH
Q psy6471 339 TVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQ 418 (635)
Q Consensus 339 ~~le~~~~~~~~f~~~~~e~~~Wl~e~~~~l~s~~~g~dl~~ve~ll~~h~~~~~~~~~~~~~~~~~~l~~v~~~l~~h~ 418 (635)
.++.|+.+++++.+|+.++.+.+...+...|+..++.+|..|+.
T Consensus 362 --------~~hrf~ad~rdL~~w~~~~~aaInadel~~dvag~e~lL~~hqE---------------------------- 405 (2399)
T KOG0040|consen 362 --------WLHRFLADFRDLSSWINEMKAAINADELAKDVAGAEALLDRHQE---------------------------- 405 (2399)
T ss_pred --------HHHHHhhhHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHH----------------------------
Confidence 56889999999999999999999999999999999999999873
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy6471 419 REQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRAR-AEE 497 (635)
Q Consensus 419 ~~~~~i~q~~~~l~~~~~~~~~~~g~~~~~~~~~~L~~~a~~l~~~~~~~~~~~~~I~~~~~~L~~~~~~L~~~~~-R~~ 497 (635)
|...|++.+++-. +-....+.++..|+... ..|+.++..+...+..|..++. |+.
T Consensus 406 --------hK~eIds~~dSf~-------------~~~~~gq~l~~~~~~as---~ev~ekl~~le~e~~~ll~lwe~r~~ 461 (2399)
T KOG0040|consen 406 --------HKGEIDAREDSFK-------------SADESGQKLVEAGHYAS---DEVREKLEILDNEKSALLELWEERRI 461 (2399)
T ss_pred --------HhhhhHHHHHHHh-------------hhccccHHHHHcccccc---HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444332110 00112222333444433 3489999999999999999999 999
Q ss_pred HHHHH--HHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy6471 498 DMKNA--TKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGE 575 (635)
Q Consensus 498 ~Le~~--L~~F~~~~~e~~~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~ 575 (635)
..+.. ++.|+++..++..||.-.+..+.+.+ .|..++++..+++||+.|+. -+.+.+..+..+-+.+.
T Consensus 462 ~yeqcmd~~lfyrdteq~d~wmskqeafl~ned---lg~sl~S~e~l~kkhedfEk-------s~~aQEeki~~~d~~at 531 (2399)
T KOG0040|consen 462 QYEQCMDLQLFYRDTEQVDTWMSKQEAFLANED---LGDSLDSVEALLKKHEDFEK-------SLAAQEEKIIALDEFAT 531 (2399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh---hcccchhHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHH
Confidence 99875 69999999999999999999999987 58889999999999999999 99999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy6471 576 ALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK 635 (635)
Q Consensus 576 ~L~~~~h~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~L~~a~~~~qf~~~~~e~~~Wl~e 635 (635)
.|+...|++++.+..+-..+..|=..|...+..|+..|++...+++|+.+|++..+||+|
T Consensus 532 kli~~~hy~~~dv~~rr~~ll~rr~~l~e~a~~r~~~lk~s~~~q~~~rd~de~~~wi~E 591 (2399)
T KOG0040|consen 532 KLIQGQHYAAEDVAARRDALLARRDALREKAATRRRLLKESLLLQQFYRDSDELKSWINE 591 (2399)
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999975
No 5
>KOG0035|consensus
Probab=99.97 E-value=1.3e-31 Score=295.35 Aligned_cols=306 Identities=23% Similarity=0.313 Sum_probs=274.9
Q ss_pred ccccccccCCCCCCcccccC-CCCccCCC-------------C-ccCCCCCC------ccCCCC--------CCCcccc-
Q psy6471 13 GLIVPKSKREGRQGVSSSQF-CSVRDTAS-------------R-LTSSGDPN------PSFSLT--------NVKWNDV- 62 (635)
Q Consensus 13 ~~~~~~~~t~~y~~v~i~~f-~sw~dG~a-------------~-~~~~~~~~------~~~~~~--------~l~~ed~- 62 (635)
-|||||++|++|.+|+|.|| +||+||+| | |+++++.+ .+|++| +||++|+
T Consensus 147 llLwcq~~Ta~y~~v~v~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt~~~~~~n~~~A~~iAek~l~i~r~ld~ed~~ 226 (890)
T KOG0035|consen 147 LLLWCQRKTAPYSNVNVQNFHTSWKDGLAFCALIHRHRPDLIDQYDKLTKQDPVENLNLAFDIAEKFLGIPRLLDAEDIV 226 (890)
T ss_pred hhhheecccCCccccccccceecccchHHHHHHHHhcChhhhhhhhhcCccchhHHhhhhhhhhhhcCCcccccCccccc
Confidence 37999999999999999999 99999999 6 88888765 467777 4999997
Q ss_pred CCCCCCcchhHhhhhhhhccCCCCCC-------CCCc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHH
Q psy6471 63 DTHEIDEKSIITYISSLYDVFPEPPA-------VHPL--YDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIE 133 (635)
Q Consensus 63 ~~~~pd~~sv~tyv~~~~~~~~~~~~-------~~~~--~~~e~~~~~~~y~~~~~~Ll~WI~~~~~~l~~~~~~~sl~~ 133 (635)
....||+++|||||++||+.|++... +.++ +.+|.+..+++|+..+++++.||..+++++..+..++....
T Consensus 227 ~~~~pde~aimtyv~~~~~~fSg~~~~~t~~n~i~s~~av~qe~~~~~e~~e~~~s~~l~~~~~~~P~l~~r~~~~~~~~ 306 (890)
T KOG0035|consen 227 EAAIPDEKAIMTYVSSYYHAFSGAEAAETAANRICSVLAVNQEKETTMEEYETLASELLEWIARRTPWLQNRVTDSVGAK 306 (890)
T ss_pred cCCCCchhhhhhhhhhccccccCcchhhhhcccccchhhccccccchHHHHHHHhhhhhhHHHhcCcccccccccchhhh
Confidence 56899999999999999999998764 2222 37788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc--ccccCCChhHHHHHHHHHHHHHHHHHHHhcCCCc-CCC-CCChHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6471 134 MKKLAADSAR--FRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVD-IDP-ELHIDVIERNWSRLLAAHQEKDSILQDEI 209 (635)
Q Consensus 134 vq~~l~~~~~--f~~~E~~~~~~ek~~le~l~~~l~~~~~~~~~~~-~~~-~~~~~~i~~~W~~L~~~~~~r~~~L~~el 209 (635)
++..+.-|.+ |+..++||....+++++..+++++++.....++. .|. +..+.+++..|..|+++..-.+.+|..++
T Consensus 307 ~q~~l~~~rd~~~r~~~~e~~v~~~~~~~~~~st~q~k~~~~~~p~~~~s~~~~~S~~~~~~~~le~~~~~~e~~ll~~~ 386 (890)
T KOG0035|consen 307 AQRKLEFSRDAVYRRLEKEPLVEDKGRLESGFSTLQTKLRLESRPAKLASSGVLVSDINDAWQGLEQAEKLYEESLLAEI 386 (890)
T ss_pred hccccccccccccccccccccccccccccccchhhhhhhhhhcccccCcccccccccccccccchhhhcccccccchhhh
Confidence 9999888887 9999999999999999999999999887677644 454 57999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy6471 210 KRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHDLRQAEENINTLFSDVQTLREGRY 288 (635)
Q Consensus 210 ~rle~l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkkh~~le~di~a~~~~v~~l~~~a~~L~~~~~ 288 (635)
.+++.+..++..|..++..-+.|....+..+..-++|..-+.-+.. .++|++|+.++.++..++..+.+++..|....|
T Consensus 387 ~~l~~~~~~~~~f~~~~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~~~~ 466 (890)
T KOG0035|consen 387 RRLERLEHLASKFSQKASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNELLY 466 (890)
T ss_pred HHHhhhhhhhhhccccCchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999888887544555555 799999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhcccC
Q psy6471 289 PQASDLHKRVQKLHQRWVALRSLLHSRLVS 318 (635)
Q Consensus 289 ~~~~~I~~r~~~L~~~w~~L~~~~~~R~~~ 318 (635)
+.+..+..++..+...|..+.++...|+.+
T Consensus 467 ~~~~~~a~~~q~i~dq~~~~~~ls~~r~pa 496 (890)
T KOG0035|consen 467 DDAKLVAADCQHICDQWDDLGQLSRKRRPA 496 (890)
T ss_pred hhhhhhhhhhhhccccccccchhhhhhchh
Confidence 999999999999999999999998877654
No 6
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.75 E-value=9e-16 Score=150.29 Aligned_cols=206 Identities=30% Similarity=0.507 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHHhHHHHHHHHHHHhhhccCChhhHHHHHHHHHHHHHHHHHHH
Q psy6471 349 NTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFH 428 (635)
Q Consensus 349 ~~f~~~~~e~~~Wl~e~~~~l~s~~~g~dl~~ve~ll~~h~~~~~~~~~~~~~~~~~~l~~v~~~l~~h~~~~~~i~q~~ 428 (635)
+.|..++.++..||.+++..+.+..++.|+.+++.++++|+. +..++..+.
T Consensus 3 ~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~-----------------------------~~~e~~~~~ 53 (213)
T cd00176 3 QQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEA-----------------------------LEAELAAHE 53 (213)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHH-----------------------------HHHHHHHCH
Confidence 679999999999999999999998888899999998888764 233333333
Q ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHH
Q psy6471 429 TRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRAR-AEEDMKNA--TKL 505 (635)
Q Consensus 429 ~~l~~~~~~~~~~~g~~~~~~~~~~L~~~a~~l~~~~~~~~~~~~~I~~~~~~L~~~~~~L~~~~~-R~~~Le~~--L~~ 505 (635)
..+ ..++..+..|+..+. +....|...++.|+.+|+.|+..+. |...|+.. .+.
T Consensus 54 ~~~--------------------~~l~~~~~~L~~~~~---~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~ 110 (213)
T cd00176 54 ERV--------------------EALNELGEQLIEEGH---PDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQ 110 (213)
T ss_pred HHH--------------------HHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 445556666665433 2345699999999999999999999 99999876 478
Q ss_pred HHHHHHHHHHhHHHHHHHhhcccCCCCCCChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Q psy6471 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAA 585 (635)
Q Consensus 506 F~~~~~e~~~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~~h~~~ 585 (635)
|+.++.++..||.+.+..+.... + +.+++.++.++..|++|.. ++..+++.+..+...|..|+..+++..
T Consensus 111 ~~~~~~~l~~wl~~~e~~l~~~~--~-~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 180 (213)
T cd00176 111 FFRDADDLEQWLEEKEAALASED--L-GKDLESVEELLKKHKELEE-------ELEAHEPRLKSLNELAEELLEEGHPDA 180 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc--c-CCCHHHHHHHHHHHHHHHH-------HHHhchHHHHHHHHHHHHHHHcCCCCc
Confidence 88888889999999999998754 2 3389999999999999998 999999999999999999999888776
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6471 586 -KCIEAYMAAMQSQWAWLLQLALCLETHLKHA 616 (635)
Q Consensus 586 -~~I~~~l~~L~~~W~~L~~~~~~R~~~L~~a 616 (635)
..|..++..|..+|..|...+..|...|..+
T Consensus 181 ~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 181 DEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999864
No 7
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.60 E-value=3.2e-13 Score=132.16 Aligned_cols=207 Identities=27% Similarity=0.453 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q psy6471 220 EKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRV 298 (635)
Q Consensus 220 ~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkkh~~le~di~a~~~~v~~l~~~a~~L~~~~~~~~~~I~~r~ 298 (635)
+.|...+..+..||.+.+..+.+..++. ++..++. +++|+.|..+|..+.+.+..|...|+.|...+++.+..|...+
T Consensus 3 ~~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~ 81 (213)
T cd00176 3 QQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERL 81 (213)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 6899999999999999999999877764 5666775 8999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCccccCCccchhhhhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhcccCCCh
Q psy6471 299 QKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDL 378 (635)
Q Consensus 299 ~~L~~~w~~L~~~~~~R~~~l~~~l~~~~~~~~~~L~~~~~~le~~~~~~~~f~~~~~e~~~Wl~e~~~~l~s~~~g~dl 378 (635)
+.|+.+|+.|+..+..|.. .|+.+ + ..++|+.++.++..||.+.+..+...+.+.++
T Consensus 82 ~~l~~~w~~l~~~~~~r~~---------------~L~~~-------~-~~~~~~~~~~~l~~wl~~~e~~l~~~~~~~~~ 138 (213)
T cd00176 82 EELNQRWEELRELAEERRQ---------------RLEEA-------L-DLQQFFRDADDLEQWLEEKEAALASEDLGKDL 138 (213)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 9999999999999999963 34443 2 55678888888999999999999877777788
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhhhccCChhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy6471 379 QGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDA 458 (635)
Q Consensus 379 ~~ve~ll~~h~~~~~~~~~~~~~~~~~~l~~v~~~l~~h~~~~~~i~q~~~~l~~~~~~~~~~~g~~~~~~~~~~L~~~a 458 (635)
+.++.++..|..+ ..++...... ++.+...+
T Consensus 139 ~~~~~~l~~~~~~-----------------------------~~~~~~~~~~--------------------~~~~~~~~ 169 (213)
T cd00176 139 ESVEELLKKHKEL-----------------------------EEELEAHEPR--------------------LKSLNELA 169 (213)
T ss_pred HHHHHHHHHHHHH-----------------------------HHHHHhchHH--------------------HHHHHHHH
Confidence 8888877776532 2222222222 34555566
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy6471 459 DKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRAR-AEEDMKN 501 (635)
Q Consensus 459 ~~l~~~~~~~~~~~~~I~~~~~~L~~~~~~L~~~~~-R~~~Le~ 501 (635)
..|+....+..+ ..|..++..|..+|..|...+. |...|+.
T Consensus 170 ~~l~~~~~~~~~--~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~ 211 (213)
T cd00176 170 EELLEEGHPDAD--EEIEEKLEELNERWEELLELAEERQKKLEE 211 (213)
T ss_pred HHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666654444332 4589999999999999999999 9998864
No 8
>smart00150 SPEC Spectrin repeats.
Probab=99.46 E-value=9e-13 Score=113.01 Aligned_cols=100 Identities=33% Similarity=0.479 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcccCCCCCCChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy6471 505 LFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPA 584 (635)
Q Consensus 505 ~F~~~~~e~~~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~~h~~ 584 (635)
.|..++.++..||.+++..+.+.+ .|.|++.++.++++|+.|+. +|..+++.+..+...|+.|+..+|++
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~---~~~d~~~~~~~~~~~~~~~~-------e~~~~~~~v~~~~~~~~~L~~~~~~~ 71 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASED---LGKDLESVEALLKKHEALEA-------ELEAHEERVEALNELGEQLIEEGHPD 71 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHcCCCc
Confidence 699999999999999999887754 57899999999999999999 99999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6471 585 AKCIEAYMAAMQSQWAWLLQLALCLETHLK 614 (635)
Q Consensus 585 ~~~I~~~l~~L~~~W~~L~~~~~~R~~~L~ 614 (635)
++.|..++..|+.+|+.|...+..|...|+
T Consensus 72 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 72 AEEIEERLEELNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998873
No 9
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=99.41 E-value=7.7e-14 Score=142.92 Aligned_cols=182 Identities=17% Similarity=0.103 Sum_probs=119.4
Q ss_pred ccccccccCCCC-CCcccccC-CCCccCCC-------------CccCCC--CCCc------cCCCC--------CCCccc
Q psy6471 13 GLIVPKSKREGR-QGVSSSQF-CSVRDTAS-------------RLTSSG--DPNP------SFSLT--------NVKWND 61 (635)
Q Consensus 13 ~~~~~~~~t~~y-~~v~i~~f-~sw~dG~a-------------~~~~~~--~~~~------~~~~~--------~l~~ed 61 (635)
-|+||++.|+|| |+|++-+| .||||||| |+..++ +.|. +|++| +++++|
T Consensus 130 lllwc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Igi~rli~ved 209 (612)
T COG5069 130 LLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIARLIGVED 209 (612)
T ss_pred hheeccccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhchHhhcCcce
Confidence 489999999999 66999999 99999999 444444 4443 34443 499999
Q ss_pred c-CCCCCCcchhHhhhhhhhccCCCCCCCCC----cc-----chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCch
Q psy6471 62 V-DTHEIDEKSIITYISSLYDVFPEPPAVHP----LY-----DSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTL 131 (635)
Q Consensus 62 ~-~~~~pd~~sv~tyv~~~~~~~~~~~~~~~----~~-----~~e~~~~~~~y~~~~~~Ll~WI~~~~~~l~~~~~~~sl 131 (635)
+ ++..||++|+||||+-+|+.|.-...+.. +. ..-...+.-.|+..+..++.-|.-+.....-..|.+++
T Consensus 210 ivnV~~pDERsimtyv~~y~~rf~~l~Kid~al~rv~rllE~~et~~qlrl~yE~~l~rll~~i~~~q~~w~v~~f~k~v 289 (612)
T COG5069 210 IVNVSIPDERSIMTYVSWYIIRFGLLEKIDIALHRVYRLLEADETLIQLRLPYEIILLRLLNLIHLKQANWKVVNFSKDV 289 (612)
T ss_pred eeecCCcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 7 78999999999999999999987554321 10 01112244467776666665555555444434566777
Q ss_pred HHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHHHHHHHhcC-CCcCCC-CCChHHHHHHHHHHHH
Q psy6471 132 IEMKKLAADSARFRTEEV-PPRQRDKQRLQHIFQDLTKYFEDVG-EVDIDP-ELHIDVIERNWSRLLA 196 (635)
Q Consensus 132 ~~vq~~l~~~~~f~~~E~-~~~~~ek~~le~l~~~l~~~~~~~~-~~~~~~-~~~~~~i~~~W~~L~~ 196 (635)
..+.....-+..|...+. .|. +..++..++.+|++...... +.|.|| |....++.-.|.....
T Consensus 290 sd~en~t~ll~ql~alcsRa~l--ettdl~sl~gqi~~n~e~y~~RKY~pPAGnpkldla~~~~lF~t 355 (612)
T COG5069 290 SDGENYTDLLNQLNALCSRAPL--ETTDLHSLAGQILQNAEKYDCRKYLPPAGNPKLDLAFVAHLFNT 355 (612)
T ss_pred hhHHHHHHHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHHHhhhhccCCCCCCcccchHHHHhhcCC
Confidence 666654444443432233 333 55677778888776544443 356666 7777888888876543
No 10
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.37 E-value=1.4e-11 Score=106.24 Aligned_cols=103 Identities=22% Similarity=0.368 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6471 503 TKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHH 582 (635)
Q Consensus 503 L~~F~~~~~e~~~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~~h 582 (635)
+++|..+++++..||.+++..+.+.+ .|.|+..+..++++|+.|+. +|..+++.++.|.+.|+.|+..+|
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~---~~~~~~~~~~~~~~~~~~~~-------ei~~~~~~l~~l~~~~~~L~~~~~ 72 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSE---PGSDLEELEEQLKKHKELQE-------EIESRQERLESLNEQAQQLIDSGP 72 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCT---HSSSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC---CCCCHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999996644 48999999999999999999 999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6471 583 PAAKCIEAYMAAMQSQWAWLLQLALCLETHLKH 615 (635)
Q Consensus 583 ~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~L~~ 615 (635)
++++.|..++..|+.+|+.|...+..|...|++
T Consensus 73 ~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 73 EDSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999975
No 11
>KOG4286|consensus
Probab=99.35 E-value=8.6e-10 Score=118.79 Aligned_cols=319 Identities=17% Similarity=0.205 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChhhHHHH
Q psy6471 220 EKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREG--RYPQASDLHKR 297 (635)
Q Consensus 220 ~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~lkkh~~le~di~a~~~~v~~l~~~a~~L~~~--~~~~~~~I~~r 297 (635)
+.|..+...+..|+-..... ....-.++...-+..+....+..+|.+ ..+...++.|..+ +..++-.+.
T Consensus 4 q~~~~~l~~f~~w~l~d~~~--~~~~l~dt~~~~~~~~~~~~~~~e~~a-----~~v~~~~~kl~~~l~~~~~~~~l~-- 74 (966)
T KOG4286|consen 4 QQFPLDLEKFLAWLLQDATR--KERLLEDSKGVKELMKQWQDLQGEIEA-----HNLDENSQKILRSLEGSDDAVLLQ-- 74 (966)
T ss_pred hhhhhhHHHHHHHHHhhhhh--hHhhhhcccccHHHHHHHhcccccccc-----ccCchHHHHHHHHhcCCccchHHH--
Confidence 67888999999999221110 000111122222224555666666666 5677777777764 333333333
Q ss_pred HHHHHHHHHHHHHHHHhcccCccccCCccchhhhhhhhhhhHhhhhhhhhhh-HHHHHHHHHHHHHHHHHHhhh-hcccC
Q psy6471 298 VQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTN-THFRALQEAIEWVKNKLAQIQ-EADYG 375 (635)
Q Consensus 298 ~~~L~~~w~~L~~~~~~R~~~l~~~l~~~~~~~~~~L~~~~~~le~~~~~~~-~f~~~~~e~~~Wl~e~~~~l~-s~~~g 375 (635)
+ .+.+|+.|+.....-+ +.||.+- +-| ++.-.++++..|++-|...++ ..+.|
T Consensus 75 ~--mn~~w~~l~kks~~ir---------------~~lea~~--------~~w~kl~~~l~el~~wl~~kd~el~~q~p~g 129 (966)
T KOG4286|consen 75 L--MNFKWSELRKKSLNIR---------------SHLEASS--------DQWKRLHLSLQELLVWLQLKDDELSRQAPIG 129 (966)
T ss_pred H--HHHHHHHHHHHHHHHH---------------HHHHHHH--------HHHHHHhhhHHHHHHHHHhhhHHHHhcCCCC
Confidence 2 8999999999887653 3444432 334 466779999999999976664 67999
Q ss_pred CChhhHHHHHHHhHHHHHHHHHHHhhhccCChhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccHHHHHHHHHHHH
Q psy6471 376 SDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALN 455 (635)
Q Consensus 376 ~dl~~ve~ll~~h~~~~~~~~~~~~~~~~~~l~~v~~~l~~h~~~~~~i~q~~~~l~~~~~~~~~~~g~~~~~~~~~~L~ 455 (635)
+|++.|+..-.-|.++ .+++......+....+....+..+.- .+.+.
T Consensus 130 gd~~avq~q~~~~~a~-----------------------------~re~k~k~~~~~s~~e~a~~fl~~~p----~e~~e 176 (966)
T KOG4286|consen 130 GDFPAVQKQNDVHRAF-----------------------------KRELKTKEPVIMSTLETARIFLTEQP----LEGLE 176 (966)
T ss_pred CChHHHHHHHHHHHHH-----------------------------HHHHhhcccHHHHHHHHHHHHHhcCC----Ccchh
Confidence 9999999876666553 22222111111111100000000000 00000
Q ss_pred HHHHHhhhcCCCCC-hH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHhHHHHHHHhhc
Q psy6471 456 EDADKLLEEGDPSD-PQ----LRRLRREMDEVNRLFDEFERRAR-AEEDMKNA---TKLFTEKASNLQSKLDEAERTLHS 526 (635)
Q Consensus 456 ~~a~~l~~~~~~~~-~~----~~~I~~~~~~L~~~~~~L~~~~~-R~~~Le~~---L~~F~~~~~e~~~Wl~eke~~l~s 526 (635)
. +-+.+.... .. ...+......+++.|++|...+. ..+.++.+ |.......+++..=|.+.|....+
T Consensus 177 ~----~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~ 252 (966)
T KOG4286|consen 177 K----YQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGS 252 (966)
T ss_pred h----cCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhc
Confidence 0 000000000 00 11244555788899999999999 88888766 578888999999999999987765
Q ss_pred ccCCCCCC-ChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q psy6471 527 RINAPVPR-DLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQL 605 (635)
Q Consensus 527 ~~~~~~~~-dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~~h~~~~~I~~~l~~L~~~W~~L~~~ 605 (635)
|.|+|+ -+++++.-+.+-++|.. ||......|..|++.+.+|....-.-+..-...++.||.||.-|...
T Consensus 253 --w~pvgdl~idsl~~h~e~~~~~~~-------ei~p~~~~v~~vndla~ql~~~d~~ls~~~~~~le~~n~rwk~Lq~S 323 (966)
T KOG4286|consen 253 --WQPVGDLLIDSLQDHLEKVKALRG-------EIAPLKENVSHVNDLARQLTTLDIQLSPYNLSTLEDLNTRWKLLQVS 323 (966)
T ss_pred --cccHHHHHHhHHHHHHHHHHHHHh-------hcchHhhchhhHHHHHHHhhhcccCCChhhHhhHHHHHHHHHHHHHH
Confidence 556664 37888888888888887 99999999999999999998765444578889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy6471 606 ALCLETHLKHAAY 618 (635)
Q Consensus 606 ~~~R~~~L~~a~~ 618 (635)
+..|..+|..|..
T Consensus 324 V~~rl~qlrna~~ 336 (966)
T KOG4286|consen 324 VPDRLTQLRNAHR 336 (966)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999863
No 12
>smart00150 SPEC Spectrin repeats.
Probab=99.08 E-value=6.9e-10 Score=94.92 Aligned_cols=96 Identities=25% Similarity=0.414 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q psy6471 221 KVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQ 299 (635)
Q Consensus 221 ~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkkh~~le~di~a~~~~v~~l~~~a~~L~~~~~~~~~~I~~r~~ 299 (635)
+|.+++..+..||.+++..+...++| .++..++. +++|+.|..+|..+++.|..+...|+.|+..++++++.|..++.
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~-~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~ 80 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLG-KDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLE 80 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 68999999999999999988877776 47777886 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccc
Q psy6471 300 KLHQRWVALRSLLHSRLV 317 (635)
Q Consensus 300 ~L~~~w~~L~~~~~~R~~ 317 (635)
.|+.+|+.|+..+..|..
T Consensus 81 ~l~~~w~~l~~~~~~r~~ 98 (101)
T smart00150 81 ELNERWEELKELAEERRQ 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999863
No 13
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=98.97 E-value=7.1e-09 Score=89.15 Aligned_cols=97 Identities=20% Similarity=0.384 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHH
Q psy6471 219 AEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKR 297 (635)
Q Consensus 219 a~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkkh~~le~di~a~~~~v~~l~~~a~~L~~~~~~~~~~I~~r 297 (635)
.++|...+..+..||..++..+...++| .++..++. +++|+.|..+|..+++.|+.|...|+.|...+++++..|..+
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~-~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPG-SDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 3799999999999999999999766664 46677775 899999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q psy6471 298 VQKLHQRWVALRSLLHSRL 316 (635)
Q Consensus 298 ~~~L~~~w~~L~~~~~~R~ 316 (635)
+..|+.+|+.|...+..|+
T Consensus 82 ~~~l~~~w~~l~~~~~~r~ 100 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERR 100 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 14
>KOG4286|consensus
Probab=98.50 E-value=0.00013 Score=79.79 Aligned_cols=122 Identities=12% Similarity=0.217 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhhHHHHHH
Q psy6471 186 VIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEH 264 (635)
Q Consensus 186 ~i~~~W~~L~~~~~~r~~~L~~el~rle~l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkkh~~le~ 264 (635)
-+|.+|..|.+...+-+. ||+...+--.+..-...++..|+.-+...+..+-+-.+++++|+. -.-|.+|..
T Consensus 75 ~mn~~w~~l~kks~~ir~-------~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~r 147 (966)
T KOG4286|consen 75 LMNFKWSELRKKSLNIRS-------HLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKR 147 (966)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHH
Confidence 499999999988887666 666665555677888899999999999998877664468899887 578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-------CCC------hhh-------HHHHHHHHHHHHHHHHHHHHh
Q psy6471 265 DLRQAEENINTLFSDVQTLREGR-------YPQ------ASD-------LHKRVQKLHQRWVALRSLLHS 314 (635)
Q Consensus 265 di~a~~~~v~~l~~~a~~L~~~~-------~~~------~~~-------I~~r~~~L~~~w~~L~~~~~~ 314 (635)
+|.+.+..|.+....|..+.... |.+ .+. +......++..|+.|...+..
T Consensus 148 e~k~k~~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~ 217 (966)
T KOG4286|consen 148 ELKTKEPVIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSAD 217 (966)
T ss_pred HHhhcccHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence 99999999999999998876521 111 111 233345667777777766654
No 15
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=97.05 E-value=3.2e-05 Score=66.92 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=50.8
Q ss_pred cccccccCCCCCCcccccC-CCCccCCC-------------CccCC---CCCCc------------cCCCC--CCCcccc
Q psy6471 14 LIVPKSKREGRQGVSSSQF-CSVRDTAS-------------RLTSS---GDPNP------------SFSLT--NVKWNDV 62 (635)
Q Consensus 14 ~~~~~~~t~~y~~v~i~~f-~sw~dG~a-------------~~~~~---~~~~~------------~~~~~--~l~~ed~ 62 (635)
+=||+..+.+|+.+.|+|| ++|+||.+ ++... .+... .+++. .+.|+|+
T Consensus 7 ~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~~~~~~Dl 86 (107)
T cd00014 7 LRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVVNFDAEDL 86 (107)
T ss_pred HHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCceeccCHHHH
Confidence 3499999999988899999 99999988 11111 11111 12222 2788887
Q ss_pred CCCCCCcchhHhhhhhhhccCC
Q psy6471 63 DTHEIDEKSIITYISSLYDVFP 84 (635)
Q Consensus 63 ~~~~pd~~sv~tyv~~~~~~~~ 84 (635)
.. .||+++|++|+..++++|.
T Consensus 87 ~~-~~n~~~vl~~l~~l~~~~~ 107 (107)
T cd00014 87 VE-DGDEKLVLGLLWSLIRKFL 107 (107)
T ss_pred hh-CCCceeeHHHHHHHHHhhC
Confidence 42 7999999999999998874
No 16
>KOG0516|consensus
Probab=96.90 E-value=0.17 Score=61.60 Aligned_cols=139 Identities=27% Similarity=0.353 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCChHHHHHHHHHhHHHHHHHhhhHHHH
Q psy6471 482 VNRLFDEFERRAR-AEEDMKNATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDL 560 (635)
Q Consensus 482 L~~~~~~L~~~~~-R~~~Le~~L~~F~~~~~e~~~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~el 560 (635)
+...|..+...+. +...+ ..++.+.+.+.....|+.++...+...+|++...+...+.. ....++.++
T Consensus 179 l~~Q~~~ll~~s~~~~~s~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e----------~~~~~~~~~ 247 (1047)
T KOG0516|consen 179 LHFQYVKLLAEASARLQSL-DSLQGSVSRASAELMWLFEAREELLQFDWSDRNLNGAARSE----------YSEVLMREL 247 (1047)
T ss_pred HHHHHHHhhhhHHhhccch-HHHHHhHhhhhHhhhhHHHHHHHHhccCChhhhhhHHHHHH----------HHHHHHHhh
Confidence 3444556666666 77777 78999999999999999999999999886544444443333 344455588
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6471 561 EKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAET 631 (635)
Q Consensus 561 ~~~~~~~~~v~~~g~~L~~~~h~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~L~~a~~~~qf~~~~~e~~~ 631 (635)
.......+.+...|..+....||+...|...+..+...|....+.+.+...+|.+...+.+|+.++..+..
T Consensus 248 ~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~l~~~~~~e~~l~~~~~~~~~~~~~~~~~~ 318 (1047)
T KOG0516|consen 248 EQLVLRKNDLEVVGDQLLLGRHPARISREAYLAALLAQWSIELELEICAERHLKHNAAYFEFFEDVRSAED 318 (1047)
T ss_pred HHHHHHHHHhhccchHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHhhhhhH
Confidence 88888999999999999999999999999999999999999999999999999999999999999987654
No 17
>KOG4240|consensus
Probab=96.74 E-value=0.033 Score=64.63 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCChHHHHHHHHHh
Q psy6471 470 PQLRRLRREMDEVNRLFDEFERRAR-AEEDMKNA--TKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQH 546 (635)
Q Consensus 470 ~~~~~I~~~~~~L~~~~~~L~~~~~-R~~~Le~~--L~~F~~~~~e~~~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh 546 (635)
+.+..|+.-+..+...-.++.-.++ +..+++.+ +.....+..++..|+++....+.+... .+.|.+....+..+|
T Consensus 241 ~mve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~l~~l~~~k~qv~~~~rng~smLt~~~~--~~s~~~et~~Lq~~~ 318 (1025)
T KOG4240|consen 241 DMVEAVQGLLESLEEEVQRLELPADVRSTRLEQASQLAKLLEDKNQVLALIRNGLSMLTQLRV--LASDLSETSQLQREH 318 (1025)
T ss_pred HHHHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhcc--CCCcCCccHHHHhhH
Confidence 3455678888888888777777777 77777655 688999999999999999999988653 577888888899999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6471 547 KDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWR 624 (635)
Q Consensus 547 ~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~~h~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~L~~a~~~~qf~~ 624 (635)
..|+. ..+.+.+. .-.++..++..+..+.|++..++..++..++.+|..|...++.|-+.+..+..++.=..
T Consensus 319 ~~f~d-----~~e~k~~~-~q~~~~~~a~~~~~~~h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~~~~~t~e 390 (1025)
T KOG4240|consen 319 RQFQD-----AQEVKTLL-SQLQVQQKAFDLLQNKHQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAVAFYKTSE 390 (1025)
T ss_pred hhhhh-----HHHHHHHH-HHHHHHHHHHHHHhchhhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99987 22332333 33444556677788899999999999999999999999999999999998877654333
No 18
>KOG0035|consensus
Probab=96.56 E-value=0.00045 Score=78.61 Aligned_cols=271 Identities=13% Similarity=0.119 Sum_probs=153.2
Q ss_pred ccccccccCCCCCCcccccCCCCccCCC-------------CccCCCCC------CccCCCCC----CCcccc-CCCCCC
Q psy6471 13 GLIVPKSKREGRQGVSSSQFCSVRDTAS-------------RLTSSGDP------NPSFSLTN----VKWNDV-DTHEID 68 (635)
Q Consensus 13 ~~~~~~~~t~~y~~v~i~~f~sw~dG~a-------------~~~~~~~~------~~~~~~~~----l~~ed~-~~~~pd 68 (635)
.|-||+..|.+|++|+++++++|+.|.+ +++.+.+. +..|+.+. ..|-++ ....||
T Consensus 426 lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~~~~~~~~~~a~~~q~i~dq~~~~~~ls~~r~pal~~~~~~~d 505 (890)
T KOG0035|consen 426 LLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNELLYDDAKLVAADCQHICDQWDDLGQLSRKRRPALMQMEKVLD 505 (890)
T ss_pred HHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccchhhhhhchhhhhhhhhhH
Confidence 3679999999999999999999999988 22222222 23344331 444444 235677
Q ss_pred cchhHhhhhhhhccCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhccccccC
Q psy6471 69 EKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEE 148 (635)
Q Consensus 69 ~~sv~tyv~~~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~Ll~WI~~~~~~l~~~~~~~sl~~vq~~l~~~~~f~~~E 148 (635)
...+|+|......++. ..|+.-....+.+.....++.+++.+...+..|+.+
T Consensus 506 k~~~~~le~a~Raa~~---------------------------~~~l~~~~~d~~d~~~~~~ire~~~~~~a~~~~k~t- 557 (890)
T KOG0035|consen 506 KLAVLTLEFAKRAAPF---------------------------NNWLKGVQEDLQDNEISYSIREIQRLRAADLQFKST- 557 (890)
T ss_pred HHHHHHHHHHHHhhhh---------------------------hhhhhhhhhhcccchhccchHhhhccchhhhhhccc-
Confidence 7777877654444333 233333222222222233445555555555556542
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCC---CcCCCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6471 149 VPPRQRDKQRLQHIFQDLTKYFEDVGE---VDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTRE 225 (635)
Q Consensus 149 ~~~~~~ek~~le~l~~~l~~~~~~~~~---~~~~~~~~~~~i~~~W~~L~~~~~~r~~~L~~el~rle~l~~la~~F~~~ 225 (635)
.|.--.+....-.............+- ....| .....+...|+.+......+...+..+..+......+...|-..
T Consensus 558 ~p~a~~~~~~~~~e~~e~~~~~~~~~~~~~~~~np-~~~~s~~~~~d~v~~~~~~~~~~~~~~~~~q~~~~s~~~~~~q~ 636 (890)
T KOG0035|consen 558 LPEADGEGQKISDEEKEREKVSEQLNPKIEPDTNP-YTTLSIYGKWDAVLSSVPDRDSIEANVHARQQPNESLRRVFAQQ 636 (890)
T ss_pred CccccchhhhhhhhhhHHHHhhhhcCccccccccc-ccccccccchhhhcccccccchhhHHHHHhhccCcccccccccc
Confidence 221111111111111111111111111 11122 22333889999999999999998888888877777776778888
Q ss_pred HHHHHhHHHHHHHHhhHhhhcccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHH
Q psy6471 226 MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRW 305 (635)
Q Consensus 226 ~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~lkkh~~le~di~a~~~~v~~l~~~a~~L~~~~~~~~~~I~~r~~~L~~~w 305 (635)
+.....|+.......+....+. +...-..+......+.-+..+.+.+..+....+.+.+.-.++...-..-+..+...|
T Consensus 637 an~~~p~vp~~~~e~s~~~~~~-~gt~e~~~~rLr~~~~~~~~~k~~~~~~~~~~q~~~~~~~~~~~~~~~~~e~~~~g~ 715 (890)
T KOG0035|consen 637 ANLDGPWVPAKMEESSRININD-QGTLEDRLERLRETEERSMNYKSNGDLLAKQHQLMQEDIIFENKHTRYTMEDLKVGW 715 (890)
T ss_pred ccCCCcccCchhhccccccccc-CCCHHHHHHHHHHHHHHhhccCcchhHHHHHHHHhhhhccccccccccchhhccccc
Confidence 8888899887666544333221 222222344444444445557777777777766665544455555555666777777
Q ss_pred HHHHHHHH
Q psy6471 306 VALRSLLH 313 (635)
Q Consensus 306 ~~L~~~~~ 313 (635)
..+..-..
T Consensus 716 e~~~~~~~ 723 (890)
T KOG0035|consen 716 EELLTIIE 723 (890)
T ss_pred cccccccc
Confidence 77766664
No 19
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=96.51 E-value=5.3e-05 Score=64.99 Aligned_cols=65 Identities=11% Similarity=-0.063 Sum_probs=44.5
Q ss_pred cccccccCCCCCCcccccC-CCCccCCC-------------CccCCC-CCC---ccCC--------------CCCCCccc
Q psy6471 14 LIVPKSKREGRQGVSSSQF-CSVRDTAS-------------RLTSSG-DPN---PSFS--------------LTNVKWND 61 (635)
Q Consensus 14 ~~~~~~~t~~y~~v~i~~f-~sw~dG~a-------------~~~~~~-~~~---~~~~--------------~~~l~~ed 61 (635)
+-||+..+.+|+++.|+|| ++|+||.+ ++.... +.+ ...| ...+.|+|
T Consensus 6 ~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~~~~~~~D 85 (103)
T smart00033 6 LRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKLVLFEPED 85 (103)
T ss_pred HHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCeeeccCHHH
Confidence 4599999999999999999 99999988 211111 110 0011 12488888
Q ss_pred cCCCCCCcchhHhhhhh
Q psy6471 62 VDTHEIDEKSIITYISS 78 (635)
Q Consensus 62 ~~~~~pd~~sv~tyv~~ 78 (635)
+..+.++.++|+.|+..
T Consensus 86 l~~~~k~~~~v~~~l~~ 102 (103)
T smart00033 86 LVEGNKLILGVIWTLIL 102 (103)
T ss_pred HhhcchHHHHHHHHHHh
Confidence 74334888899888764
No 20
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=96.32 E-value=0.00025 Score=61.43 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=49.5
Q ss_pred ccccccCCCC-CCcccccC-CCCccCCC-------------CccCCCCC--C---c-------------cCCCC-CCCcc
Q psy6471 15 IVPKSKREGR-QGVSSSQF-CSVRDTAS-------------RLTSSGDP--N---P-------------SFSLT-NVKWN 60 (635)
Q Consensus 15 ~~~~~~t~~y-~~v~i~~f-~sw~dG~a-------------~~~~~~~~--~---~-------------~~~~~-~l~~e 60 (635)
=||+..+.++ ++..|+|| ++|+||.+ ++..+.+. . . .+++. .++|+
T Consensus 6 ~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~~~~~~ 85 (108)
T PF00307_consen 6 KWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPPLLSPE 85 (108)
T ss_dssp HHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSCTS-HH
T ss_pred HHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCCCCCHH
Confidence 4999999988 48899999 99999988 44445221 1 0 13333 26888
Q ss_pred ccCCCCCCcchhHhhhhhhhccCC
Q psy6471 61 DVDTHEIDEKSIITYISSLYDVFP 84 (635)
Q Consensus 61 d~~~~~pd~~sv~tyv~~~~~~~~ 84 (635)
|+.. .+|+++|++|+..++++|.
T Consensus 86 dl~~-~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 86 DLVE-KGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp HHHS-TT-HHHHHHHHHHHHHHHT
T ss_pred HHHH-CcCHHHHHHHHHHHHHHHC
Confidence 8743 8999999999999998873
No 21
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=73.52 E-value=1.9e+02 Score=33.74 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHhHHHHHHHhhcccCC-CCCCChHHHHHHHHHhHH
Q psy6471 473 RRLRREMDEVNRLFDEFERRAR--AEEDMKNAT-KLFTEKASNLQSKLDEAERTLHSRINA-PVPRDLDSLEHLVLQHKD 548 (635)
Q Consensus 473 ~~I~~~~~~L~~~~~~L~~~~~--R~~~Le~~L-~~F~~~~~e~~~Wl~eke~~l~s~~~~-~~~~dl~~v~~ll~kh~~ 548 (635)
+.|..+-..|...|..|..-+. |+...++.. .-|..-..++..-+++-+..+...... +.|-..+.-..+.++-+.
T Consensus 238 e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s 317 (683)
T PF08580_consen 238 EELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIES 317 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence 3478888899999999999998 777776543 344444455555555555554432211 112222322333332222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHhcCCCChhHHHHHHH-HHHHHHHHHHHHHH
Q psy6471 549 FESTLKNLMSDLEKREIQFSAVQ--DRGEALILQHHPAAKCIEAYMA-AMQSQWAWLLQLAL 607 (635)
Q Consensus 549 ~~~~~~~l~~el~~~~~~~~~v~--~~g~~L~~~~h~~~~~I~~~l~-~L~~~W~~L~~~~~ 607 (635)
+++ ....+-.++ +....|+.. .|..++. +|..+|..|+....
T Consensus 318 ~~~-----------k~~~~~~~I~ka~~~sIi~~------gv~~r~n~~L~~rW~~L~~~~d 362 (683)
T PF08580_consen 318 KEK-----------KKSHYFPAIYKARVLSIIDK------GVADRLNADLAQRWLELKEDMD 362 (683)
T ss_pred HHH-----------HHhccHHHHHHHHHHHhhhh------hHHHHhhHHHHHHHHHHHHHHH
Confidence 221 112233333 344445543 2777777 99999999984433
No 22
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=69.78 E-value=1.2 Score=36.74 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=16.9
Q ss_pred CCCCCCcccccC-CCCccCCC
Q psy6471 21 REGRQGVSSSQF-CSVRDTAS 40 (635)
Q Consensus 21 t~~y~~v~i~~f-~sw~dG~a 40 (635)
...+.++.|.|| .|++||.|
T Consensus 5 ~~~~~~~~v~dl~~~l~DG~~ 25 (85)
T PF11971_consen 5 RCAPYFPPVEDLTQDLSDGRA 25 (85)
T ss_pred ccCCCCcchhhhhhhhccHHH
Confidence 345559999999 99999987
No 23
>KOG4240|consensus
Probab=67.86 E-value=2.8e+02 Score=33.49 Aligned_cols=133 Identities=11% Similarity=0.133 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhhHHH
Q psy6471 183 HIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDV 261 (635)
Q Consensus 183 ~~~~i~~~W~~L~~~~~~r~~~L~~el~rle~l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkkh~~ 261 (635)
..+.|...-..|.....+++..-...-.++..+.++ .+.......+..|+.+-...+..-..-.++++.... ...|..
T Consensus 242 mve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~l-~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~ 320 (1025)
T KOG4240|consen 242 MVEAVQGLLESLEEEVQRLELPADVRSTRLEQASQL-AKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQ 320 (1025)
T ss_pred HHHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHHH-HHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhh
Confidence 444555555555555554443322233345455555 677788889999999988777653322234444333 567777
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhcc
Q psy6471 262 LEHDLRQ-AEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRL 316 (635)
Q Consensus 262 le~di~a-~~~~v~~l~~~a~~L~~~~~~~~~~I~~r~~~L~~~w~~L~~~~~~R~ 316 (635)
|..-+.. ....-..+...|..+...+|+...++......+...|..|...+..|.
T Consensus 321 f~d~~e~k~~~~q~~~~~~a~~~~~~~h~~~~e~~~~le~~~t~~qql~~~~e~r~ 376 (1025)
T KOG4240|consen 321 FQDAQEVKTLLSQLQVQQKAFDLLQNKHQNRDESLEKLETLQTKWQQLMTAMEDRL 376 (1025)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHhHHHHhhhHHHHHHHHHHHH
Confidence 7665555 222222334446666778899999999999999999999999999885
No 24
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=66.37 E-value=1.5e+02 Score=29.88 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCChHHHHHHHHHhHHHHHHHhhhHH
Q psy6471 480 DEVNRLFDEFERRAR-AEEDMKNATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMS 558 (635)
Q Consensus 480 ~~L~~~~~~L~~~~~-R~~~Le~~L~~F~~~~~e~~~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh~~~~~~~~~l~~ 558 (635)
..+...|.....-.. +...+.+.|-+|...+.++..||.+........+ .=....+..+..++.-. .
T Consensus 163 ~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~-----~ln~~n~~~l~~~~~k~-------~ 230 (264)
T PF06008_consen 163 SRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAE-----DLNRANQKNLEDLEKKK-------Q 230 (264)
T ss_pred HHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-------H
Confidence 333344444444444 5555656678899999999999999877665532 11122222222222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy6471 559 DLEKREIQFSAVQDRGEALILQ 580 (635)
Q Consensus 559 el~~~~~~~~~v~~~g~~L~~~ 580 (635)
+|......+......|+.++..
T Consensus 231 ~l~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 231 ELSEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777788888888777754
No 25
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.06 E-value=2.6e+02 Score=29.22 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=47.1
Q ss_pred cCCCCCCcccccC-CCCccCCCCccCCCCC-C--ccCCCCCCCccccCCCCCCcchhHhhhhhhhccCCCCCCCCCccch
Q psy6471 20 KREGRQGVSSSQF-CSVRDTASRLTSSGDP-N--PSFSLTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDS 95 (635)
Q Consensus 20 ~t~~y~~v~i~~f-~sw~dG~a~~~~~~~~-~--~~~~~~~l~~ed~~~~~pd~~sv~tyv~~~~~~~~~~~~~~~~~~~ 95 (635)
...+|+.|.+++| .-- |+-.|+.+.-. . +...++..++. .+.+.++--|+..+|..+|
T Consensus 7 ~~~~~~~isL~~FL~~~--~I~F~dDl~~~~~~~kr~~~~~~~~~-----~~~~~sl~~~~~A~~~~~P----------- 68 (325)
T PF08317_consen 7 DDEDYEPISLQDFLNMT--GIRFYDDLEMELTTTKRRSTTAPDSS-----DEEPPSLEDYVVAGYCTVP----------- 68 (325)
T ss_pred ccCCCCCcCHHHHHHHh--CceeCCCccccccccCCcccCCCCcC-----CCCCCCHHHHHHHhccCCh-----------
Confidence 3457778888888 544 44333433311 0 11111111111 3455677777766655444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6471 96 ESQQRVNEYCDLASSLHLWMREKTAYMQD 124 (635)
Q Consensus 96 e~~~~~~~y~~~~~~Ll~WI~~~~~~l~~ 124 (635)
+.+-|...+.+|..+|.+....+.+
T Consensus 69 ----~Lely~~~c~EL~~~I~egr~~~~~ 93 (325)
T PF08317_consen 69 ----MLELYQFSCRELKKYISEGRQIFEE 93 (325)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888999999999987766544
No 26
>KOG0994|consensus
Probab=56.02 E-value=4.6e+02 Score=32.10 Aligned_cols=128 Identities=13% Similarity=0.207 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhh-hhhHHH
Q psy6471 183 HIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDV 261 (635)
Q Consensus 183 ~~~~i~~~W~~L~~~~~~r~~~L~~el~rle~l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~-lkkh~~ 261 (635)
.-.+-...|+.+...+..|-..|......++..-.+ ..|......++..|.++...|+.... +...++. -...+.
T Consensus 1161 PCh~CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~-gay~s~f~~me~kl~~ir~il~~~sv---s~~~i~~l~~~~~~ 1236 (1758)
T KOG0994|consen 1161 PCHECFQTWDAILQELALRTHRLINRAKELKQTGVL-GAYASRFLDMEEKLEEIRAILSAPSV---SAEDIAQLASATES 1236 (1758)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhhHhHHHHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHH
Confidence 355778889999999999998887765555544443 67888888999999999998876543 2334444 466777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHHHHHHHHHHHHh
Q psy6471 262 LEHDLRQAEENINTLFSDVQTLREGRY---PQASDLHKRVQKLHQRWVALRSLLHS 314 (635)
Q Consensus 262 le~di~a~~~~v~~l~~~a~~L~~~~~---~~~~~I~~r~~~L~~~w~~L~~~~~~ 314 (635)
+...|.+..+.+..+...-..+.+... .+-+.++.....|......|.+.+..
T Consensus 1237 lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ 1292 (1758)
T KOG0994|consen 1237 LRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEK 1292 (1758)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777777665544444333 23444555555566555555555543
No 27
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.76 E-value=5.7e+02 Score=32.46 Aligned_cols=52 Identities=12% Similarity=0.235 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy6471 475 LRREMDEVNRLFDEFERRAR-AEEDMKNATKLFTEKASNLQSKLDEAERTLHS 526 (635)
Q Consensus 475 I~~~~~~L~~~~~~L~~~~~-R~~~Le~~L~~F~~~~~e~~~Wl~eke~~l~s 526 (635)
+...+..+...+..+..... ....+...+..|...++.+.....+-...+..
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~ 966 (1311)
T TIGR00606 914 LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD 966 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555666666666666665 55556555566666666666666665555544
No 28
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=44.04 E-value=1.7e+02 Score=23.48 Aligned_cols=53 Identities=17% Similarity=0.477 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q psy6471 261 VLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHS 314 (635)
Q Consensus 261 ~le~di~a~~~~v~~l~~~a~~L~~~~~~~~~~I~~r~~~L~~~w~~L~~~~~~ 314 (635)
.+..+|.+...+|.+|......+. .+.+...++..+++.+..+-+.|...+..
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~-~~~~~v~~l~~klDa~~~~l~~l~~~V~~ 60 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLE-SNLPDVTELNKKLDAQSAQLTTLNTKVNE 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888887764 44588888888888888888888776654
No 29
>PHA03395 p10 fibrous body protein; Provisional
Probab=38.74 E-value=1.9e+02 Score=23.83 Aligned_cols=53 Identities=9% Similarity=0.378 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q psy6471 261 VLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHS 314 (635)
Q Consensus 261 ~le~di~a~~~~v~~l~~~a~~L~~~~~~~~~~I~~r~~~L~~~w~~L~~~~~~ 314 (635)
.+.++|.+.-++|..|......+ .++.++..+|..+++.+...-..+...+..
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l-~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~ 60 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDV-RANLPDVTEINEKLDAQSASLDTISSAVDN 60 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH-HhcCCcHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46778888888999998887777 567889999999988888888777766654
No 30
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=35.64 E-value=2.1e+02 Score=22.41 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q psy6471 554 KNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLL 603 (635)
Q Consensus 554 ~~l~~el~~~~~~~~~v~~~g~~L~~~~h~~~~~I~~~l~~L~~~W~~L~ 603 (635)
+....+...+-..-..|++.++.|... ++.......+..|+.+|..+.
T Consensus 23 ~~~~~~~~~n~~~K~~Li~~~~~l~~~--~d~~~~~~~~k~l~~~Wk~iG 70 (77)
T PF03993_consen 23 EEQDAEREENLEKKEALIEEAEALAES--EDWKEAAEEIKELQQEWKEIG 70 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHcC
Confidence 344446666667777888888888763 336788899999999998763
No 31
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=25.78 E-value=1e+03 Score=27.02 Aligned_cols=93 Identities=18% Similarity=0.330 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCChHHHHHHHHHhHHHHHHHhhh
Q psy6471 480 DEVNRLFDEFERRAR-AEEDMK--NATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNL 556 (635)
Q Consensus 480 ~~L~~~~~~L~~~~~-R~~~Le--~~L~~F~~~~~e~~~Wl~eke~~l~s~~~~~~~~dl~~v~~ll~kh~~~~~~~~~l 556 (635)
..+...|+.|..-.. |..--+ ..+..|...+.+...=+...-..+... +.-...++..++.+-++-+.++..|..+
T Consensus 285 ~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s-Y~L~~~e~~~~~~l~~~l~~l~~~~~~~ 363 (560)
T PF06160_consen 285 ERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQS-YTLNHNELEIVRELEKQLKELEKRYEDL 363 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444 332221 124455554444443333333333332 1111234555555544444555544444
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6471 557 MSDLEKREIQFSAVQDR 573 (635)
Q Consensus 557 ~~el~~~~~~~~~v~~~ 573 (635)
...+..+...+..+...
T Consensus 364 ~~~i~~~~~~yS~i~~~ 380 (560)
T PF06160_consen 364 EERIEEQQVPYSEIQEE 380 (560)
T ss_pred HHHHHcCCcCHHHHHHH
Confidence 44444444444444443
No 32
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.79 E-value=4.8e+02 Score=22.95 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=50.4
Q ss_pred CCCChHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------hc------CCCChhHHHHHHHHHHHH
Q psy6471 532 VPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALI-------LQ------HHPAAKCIEAYMAAMQSQ 598 (635)
Q Consensus 532 ~~~dl~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~-------~~------~h~~~~~I~~~l~~L~~~ 598 (635)
.|.++..+..+-..-+.++. |+.+.+..+..+...-..+. .. .....+.++..+..|+.|
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~-------E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEG-------ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred CCchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777776666666666 55555554444433322221 11 122345788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6471 599 WAWLLQLALCLETHLKHAA 617 (635)
Q Consensus 599 W~~L~~~~~~R~~~L~~a~ 617 (635)
.+.+.++..++....++-.
T Consensus 84 y~t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHhcchHHHHHHHH
Confidence 9999999999988877643
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.90 E-value=1.2e+03 Score=27.27 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=52.1
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc---CCCChhHHHHHHHHHHHHHHHHHH
Q psy6471 537 DSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQ---HHPAAKCIEAYMAAMQSQWAWLLQ 604 (635)
Q Consensus 537 ~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~---~h~~~~~I~~~l~~L~~~W~~L~~ 604 (635)
+..+.+-.+.+.++.+++.+..|+...++.+..+...++.|..- ++.+.+.+..-+..|+++=..|..
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445666778899999999999999999999999998877642 466777777777777776655543
No 34
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.73 E-value=4.4e+02 Score=22.14 Aligned_cols=52 Identities=12% Similarity=0.309 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy6471 474 RLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLH 525 (635)
Q Consensus 474 ~I~~~~~~L~~~~~~L~~~~~R~~~Le~~L~~F~~~~~e~~~Wl~eke~~l~ 525 (635)
.|...+..|+..|..|.........++..+-.|-..+..+..|..+-|..+.
T Consensus 46 ~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 46 GLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677788888889888777667777777888888999999999988877654
No 35
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=22.88 E-value=3.4e+02 Score=20.43 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHH
Q psy6471 475 LRREMDEVNRLFDEFERRARAEEDMK-NATKLFTEKASNLQSKLDEA 520 (635)
Q Consensus 475 I~~~~~~L~~~~~~L~~~~~R~~~Le-~~L~~F~~~~~e~~~Wl~ek 520 (635)
+++--+.+...|+++...+.|.-.|- +..+.|++...+++.|+...
T Consensus 6 Lqe~sdqls~~yEK~IaeskrLIDLsIqnY~~Fl~yi~eLL~~lq~a 52 (58)
T PF12491_consen 6 LQEFSDQLSDYYEKFIAESKRLIDLSIQNYHMFLRYITELLKELQSA 52 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777788888888777777774 35799999999999999753
No 36
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.42 E-value=9.3e+02 Score=25.03 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=48.8
Q ss_pred CCCCcccccC-CCCccCCCCccCCCCCCccCCCCCCCccccCCCCCCcchhHhhhhhhhccCCCCCCCCCccchhhhHHH
Q psy6471 23 GRQGVSSSQF-CSVRDTASRLTSSGDPNPSFSLTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRV 101 (635)
Q Consensus 23 ~y~~v~i~~f-~sw~dG~a~~~~~~~~~~~~~~~~l~~ed~~~~~pd~~sv~tyv~~~~~~~~~~~~~~~~~~~e~~~~~ 101 (635)
+|..|.+++| ..= |+-.|+.++...+....+.....-.+ ..+.++--||..+|..+| +.
T Consensus 6 ~~~~isL~dFL~~t--~I~Fmdd~t~~~r~~~~p~~~~~~~~---~~~~sl~~~v~A~~~~iP---------------~L 65 (312)
T smart00787 6 PTEPISLQDFLNMT--GIRFMELLTTKRRHTPAPAISLNRIS---EEDCSLDQYVVAGYCTVP---------------LL 65 (312)
T ss_pred CCCCccHHHHHHHc--CceeeccccccccCCCCCcccccccc---cCCCCHHHHHHHhcCCCc---------------HH
Confidence 7888888888 655 55545555432221111110000000 134577778776666554 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy6471 102 NEYCDLASSLHLWMREKTAYMQD 124 (635)
Q Consensus 102 ~~y~~~~~~Ll~WI~~~~~~l~~ 124 (635)
+-|..-|.+|..||.+-...+..
T Consensus 66 ElY~~sC~EL~~~I~egr~~~~~ 88 (312)
T smart00787 66 ELYQFSCKELKKYISEGRDLFKE 88 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999997765544
No 37
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=21.30 E-value=9e+02 Score=24.79 Aligned_cols=118 Identities=13% Similarity=0.083 Sum_probs=62.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHhhHhhhcccCCchhhhhhhHHHHHHHHHH-HH
Q psy6471 194 LLAAHQEKDSILQDEIKRLDR--LQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQ-AE 270 (635)
Q Consensus 194 L~~~~~~r~~~L~~el~rle~--l~~la~~F~~~~~~~~~WL~~~e~~l~~~~~g~~~l~~ve~lkkh~~le~di~a-~~ 270 (635)
.+..+..|-..+-+.+..+++ |+.+-.+|+++..++..-|..+++.|..-..|. ..|+.++.+.. ..++.. |-
T Consensus 36 teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G~---~LVekM~~YAS-DQEVLdMh~ 111 (324)
T PF12126_consen 36 TEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGG---ALVEKMKLYAS-DQEVLDMHG 111 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH---HHHHHHHHhcc-hHHHHHHHH
Confidence 333344443333333333332 334446899999999999999999998866653 55666655543 223333 32
Q ss_pred HHHHHHHHHHHHH----hc-CCCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q psy6471 271 ENINTLFSDVQTL----RE-GRYPQASDLHKRVQKLHQRWVALRSLLHSR 315 (635)
Q Consensus 271 ~~v~~l~~~a~~L----~~-~~~~~~~~I~~r~~~L~~~w~~L~~~~~~R 315 (635)
-.-+.|....++- .. ..+...++.+.|++.|..+-..=......|
T Consensus 112 FlreAL~rLrqeePq~lqa~V~td~F~E~k~rLQ~L~scItq~tdaa~~~ 161 (324)
T PF12126_consen 112 FLREALERLRQEEPQNLQAAVRTDGFDEFKARLQDLVSCITQGTDAAVSR 161 (324)
T ss_pred HHHHHHHHhhhhcCcccccceecccHHHHHHHHHHHHHHHhcCcccccCC
Confidence 2223333333321 11 123456667777776666655433333333
No 38
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=20.78 E-value=6.7e+02 Score=23.11 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy6471 536 LDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALIL 579 (635)
Q Consensus 536 l~~v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~ 579 (635)
++..-..+..|..|. |-.....++.++..+|=.|+.
T Consensus 104 LD~cl~Fl~~h~~fk--------ea~~Y~~rf~q~ltRAl~lIk 139 (157)
T PF04136_consen 104 LDECLEFLEEHPNFK--------EAEVYLIRFRQCLTRALTLIK 139 (157)
T ss_pred HHHHHHHHHHhhhhh--------hhHHHHHHHHHHHHHHHHHHH
Confidence 444555666777663 566777888888888887775
No 39
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.19 E-value=3.8e+02 Score=20.86 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=23.1
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy6471 539 LEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAA 594 (635)
Q Consensus 539 v~~ll~kh~~~~~~~~~l~~el~~~~~~~~~v~~~g~~L~~~~h~~~~~I~~~l~~ 594 (635)
|..||..|+.+.. |=......+.+....-..|++....+...|...+..
T Consensus 9 le~Li~~~~~L~~-------EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 9 VEHLLEYLERLKS-------ENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445554544444 444444455555555455555444444444444433
Done!