RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6471
(635 letters)
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 187 bits (474), Expect = 2e-50
Identities = 98/574 (17%), Positives = 196/574 (34%), Gaps = 72/574 (12%)
Query: 60 NDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDS---------ESQQRVNEYCDLASS 110
+ V T DEK+I+TY+SS Y F + E++Q + +Y LAS
Sbjct: 202 DIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASD 261
Query: 111 LHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYF 170
L W+R ++++R +T+ M++ D +R PP+ ++K +L+ F L
Sbjct: 262 LLEWIRRTIPWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKL 321
Query: 171 EDVGEVDIDP--ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKR 228
P + I W L A + + L +EI+RL+RL LAEK ++
Sbjct: 322 RLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASI 381
Query: 229 VDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHDLRQAEENINTLFSDVQTLREGR 287
+ + E+ + ++ L + A + E DL ++ + + + Q L E
Sbjct: 382 HESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELD 441
Query: 288 YPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVD 347
Y + ++ R QK+ +W L +L R R +T ++ET
Sbjct: 442 YYDSPSVNARCQKICDQWDNLGALTQKR---------------REALERTEKLLETIDQL 486
Query: 348 TNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDL 407
+ + W++ + +Q+ ++ +Q H++ + + +
Sbjct: 487 YLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKE------ 540
Query: 408 QGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDP 467
QA + IH I++ +H +A + +N + + +
Sbjct: 541 --RQAILGIHNEVSKIVQTYHV---------NMAGTNPYTTITPQEINGKWEHVRQLVPR 589
Query: 468 SDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSR 527
D L + RL +F +A K + E TL +
Sbjct: 590 RDQALMEEHARQQQNERLRKQFGAQANVIGPWIQ------TKMEEIGRISIEMHGTLEDQ 643
Query: 528 INAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKC 587
+N L+ + + + ++ + + K
Sbjct: 644 LNH----------------------LRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKH 681
Query: 588 IEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQ 621
M ++ W LL +++
Sbjct: 682 TNYTMEHIRVGWEQLLTTIARTINEVENQILTRD 715
Score = 53.4 bits (127), Expect = 2e-07
Identities = 41/299 (13%), Positives = 99/299 (33%), Gaps = 39/299 (13%)
Query: 353 RALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQA 412
+A + EW+ N++ +++ D+ ++ +A I + Q+ + L ++A
Sbjct: 349 QAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKA 408
Query: 413 EIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQL 472
+ H+ ++ + RVE + A +L E P +
Sbjct: 409 LLKKHEAFESDLAAHQDRVE--------------------QIAAIAQELNELDYYDSPSV 448
Query: 473 -RRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTE-------KASNLQSKLDEAERTL 524
R ++ D+ + L ++R A E + + + +A+ + ++ A L
Sbjct: 449 NARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDL 508
Query: 525 HSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPA 584
+ ++ ++ L H+ F++TL + + + + V + +
Sbjct: 509 QDTF---IVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGT 565
Query: 585 AKCIEAYMAAMQSQWAWLLQLALCLETHLKHAA--------YYHQFWREMKDAETWINK 635
+ +W + QL + L QF + WI
Sbjct: 566 NPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQT 624
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 154 bits (391), Expect = 2e-43
Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 4/226 (1%)
Query: 96 ESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRD 155
E Q R EY +L L WMR TA ++R FPS+ E++ L + +F+ E+P ++ D
Sbjct: 8 ELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEAD 67
Query: 156 KQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRL 215
K R + I+Q L + G++ + P H +E+ W +L A E++ L+ E +RL+ L
Sbjct: 68 KNRSKGIYQSLEGAVQ-AGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEAL 126
Query: 216 QRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINT 275
QR+ K+ E + +L + ++ + + L +E DL +A+ I
Sbjct: 127 QRIVTKLQMEAGLAEEQLNQADALLQSDV---RLLAAGKVPQRAGEVERDLDKADSMIRL 183
Query: 276 LFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLA 321
LF+DVQTL++GR+PQ +++RV +LH+R VA+R+ + RL + +A
Sbjct: 184 LFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGVA 229
Score = 31.2 bits (70), Expect = 0.90
Identities = 23/214 (10%), Positives = 66/214 (30%), Gaps = 22/214 (10%)
Query: 392 QNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIR 451
++ A +E + S + ++ + + +E ++
Sbjct: 28 RHHTAAFEERRFPSSFEEIEILWSQFLK--------FKEMELPAKEADKNRSKGIYQSLE 79
Query: 452 KALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKAS 511
A+ K+ P D + + + + R + E ++ +A
Sbjct: 80 GAVQAGQLKVPPGYHPLDVEKEWGKLHVAILER-EKQLRSEFERLEALQRIVTKLQMEAG 138
Query: 512 NLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQ 571
+ +L++A+ L S + L + + + + E DL+K + +
Sbjct: 139 LAEEQLNQADALLQSDV------RLLAAGKVPQRAGEVER-------DLDKADSMIRLLF 185
Query: 572 DRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQL 605
+ + L HP + + + + + +
Sbjct: 186 NDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTE 219
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 158 bits (399), Expect = 3e-42
Identities = 89/524 (16%), Positives = 181/524 (34%), Gaps = 63/524 (12%)
Query: 96 ESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRD 155
E+++ + EY LAS L W+R ++++R T+ M+K D +R + PP+ ++
Sbjct: 8 ENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQE 67
Query: 156 KQRLQHIFQDLTKYFEDVGEVDIDPE--LHIDVIERNWSRLLAAHQEKDSILQDEIKRLD 213
K +L+ F L P + I W RL A + + L +EI+RL+
Sbjct: 68 KCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLE 127
Query: 214 RLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHDLRQAEEN 272
RL+ LAEK ++ + E + ++ L + A + E DL ++
Sbjct: 128 RLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDR 187
Query: 273 INTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERT 332
+ + + Q L E Y A +++ R QK+ +W L +L R R
Sbjct: 188 VEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKR---------------RE 232
Query: 333 VTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQ 392
+ ++ET + W++ + +Q+ ++ +Q+ I H++ +
Sbjct: 233 ALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFK 292
Query: 393 NIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRK 452
+ + Q+ +AI + +I+ ++ R+
Sbjct: 293 ATLPEADGE--------RQSIMAIQNEVEKVIQSYNIRISSS---------NPYSTVTMD 335
Query: 453 ALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASN 512
L DK+ + D L+ RL +F +A A
Sbjct: 336 ELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIG--------------- 380
Query: 513 LQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQD 572
+ + + +LE + Q K +E ++ + ++
Sbjct: 381 --PWIQNKMEEI----ARSSIQITGALEDQMNQLKQYE-------HNIINYKNNIDKLEG 427
Query: 573 RGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHA 616
+ + K M ++ W LL ++
Sbjct: 428 DHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQ 471
Score = 46.4 bits (109), Expect = 2e-05
Identities = 38/296 (12%), Positives = 103/296 (34%), Gaps = 33/296 (11%)
Query: 353 RALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQA 412
+A + EW+ N++ +++ ++ ++ +A +Q+ + L V+A
Sbjct: 110 QAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRA 169
Query: 413 EIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQL 472
+ H+ ++ + RVE + A +L E +
Sbjct: 170 LLRKHEAFESDLAAHQDRVE--------------------QIAAIAQELNELDYHDAVNV 209
Query: 473 RRLRREM-DEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRI--- 528
+++ D+ +RL ++R A E M+ + + + + +
Sbjct: 210 NDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDL 269
Query: 529 -NAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKC 587
+ + ++ ++ L+ H+ F++TL + + + V+ ++ ++ +
Sbjct: 270 QDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPY 329
Query: 588 IEAYMAAMQSQWAWLLQLALCLETHLKHA--------AYYHQFWREMKDAETWINK 635
M ++++W + QL + L+ QF + WI
Sbjct: 330 STVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQN 385
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 90.8 bits (225), Expect = 8e-21
Identities = 59/280 (21%), Positives = 111/280 (39%), Gaps = 65/280 (23%)
Query: 335 RQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNI 394
++++ L + + + +Q+ + WV Q+ ++GSDL V++
Sbjct: 9 LLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVES----------- 57
Query: 395 IAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKAL 454
++ H+ IE+F + ++ ++ + M A + + L
Sbjct: 58 --HLEN----------------HKNVHRAIEEFESSLKEAKISE-IQMTAPLKLSYTDKL 98
Query: 455 NEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQ 514
+ + + + S Q R L + F +A+N
Sbjct: 99 HRLESQYAKLLNTSRNQERHLDTLHN-------------------------FVTRATNEL 133
Query: 515 SKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRG 574
L+E E + + S+ H + M +LE++E AVQ+
Sbjct: 134 IWLNEKEESEVAY---DWSERNSSVARKKSYHAEL-------MRELEQKEESIKAVQEIA 183
Query: 575 EALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLK 614
E L+L++HPA IEAY AAMQ+QW+W+LQL C+E H++
Sbjct: 184 EQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQ 223
Score = 39.6 bits (92), Expect = 0.002
Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 17/154 (11%)
Query: 481 EVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLE 540
++ ++ + + ++++ ++ + +L + +DE + L DL S+E
Sbjct: 1 KLMQIRKPLLKSSLLDQNLTEE-EVNMKFVQDLLNWVDEMQVQLDR---TEWGSDLPSVE 56
Query: 541 HLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWA 600
+ HK+ ++ S L++ +I + P + ++SQ+A
Sbjct: 57 SHLENHKNVHRAIEEFESSLKEAKISEIQMT----------APLKLSYTDKLHRLESQYA 106
Query: 601 WLLQLALCLETHLKHAAYYHQFWREMKDAETWIN 634
LL + +H H F + W+N
Sbjct: 107 KLLNTS---RNQERHLDTLHNFVTRATNELIWLN 137
Score = 33.0 bits (75), Expect = 0.22
Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 24/157 (15%)
Query: 181 ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELES-- 238
+H + E S A E ++ D+L RL + + + + L++
Sbjct: 64 NVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLH 123
Query: 239 ----RINEE----------------ARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFS 278
R E + R + + H L +L Q EE+I +
Sbjct: 124 NFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHA--ELMRELEQKEESIKAVQE 181
Query: 279 DVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSR 315
+ L +P + + +W + L
Sbjct: 182 IAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCV 218
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 92.3 bits (229), Expect = 1e-20
Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 32/241 (13%)
Query: 396 AQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALN 455
A + DYG DL V + HQ + I R++ LN
Sbjct: 24 ALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLK--------------------DLN 63
Query: 456 EDADKLLEEGDPSDPQLRRLRREMDEV-NRLFDEFERRARAEEDMKNATKLFTEKASNLQ 514
AD L+ Q++ R ++ R+ R + + F + + +
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRD-MDDEE 122
Query: 515 SKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRG 574
S + E + + S RDL +++L +HK ++L E V D G
Sbjct: 123 SWIKEKKLLVSSE---DYGRDLTGVQNLRKKHKRL-------EAELAAHEPAIQGVLDTG 172
Query: 575 EALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWIN 634
+ L + + I+ +A W L QLA L+ + Y QF +++ E WIN
Sbjct: 173 KKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWIN 232
Query: 635 K 635
+
Sbjct: 233 E 233
Score = 83.0 bits (205), Expect = 2e-17
Identities = 63/400 (15%), Positives = 138/400 (34%), Gaps = 88/400 (22%)
Query: 218 LAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLF 277
+ +K D L E+E+ + E D + +LE D+ E+ + L
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 278 SDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQT 337
S +L S + + + ++ R+ ++S+ +R
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAAR---------------------- 101
Query: 338 RTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQ 397
R + FR + + W+K K + DYG DL GVQ H+R
Sbjct: 102 RAKLNESHRLHQ-FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKR------- 153
Query: 398 IQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNED 457
++AE+A H+ + + +
Sbjct: 154 ------------LEAELAAHE------------------------------PAIQGVLDT 171
Query: 458 ADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARA-EEDMKNATKL--FTEKASNLQ 514
KL ++ ++++ + + + E ++ A A + ++ + + F +
Sbjct: 172 GKKLSDDNTIGKEEIQQR---LAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEE 228
Query: 515 SKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRG 574
+ ++E + S L +++ L+ +H+ FE+ D + + + V G
Sbjct: 229 AWINEKMTLVASE---DYGDTLAAIQGLLKKHEAFET-------DFTVHKDRVNDVCANG 278
Query: 575 EALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLK 614
E LI +++ + I A M ++ + + L + A + L
Sbjct: 279 EDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD 318
Score = 48.3 bits (115), Expect = 4e-06
Identities = 23/220 (10%), Positives = 70/220 (31%), Gaps = 12/220 (5%)
Query: 96 ESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRD 155
R++++ W++EK + ++ L ++ L R E
Sbjct: 106 NESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAE----LAAH 161
Query: 156 KQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRL 215
+ +Q + K +D + + + +W L + L++ ++
Sbjct: 162 EPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE----- 216
Query: 216 QRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINT 275
++ ++ + + E + + E + E D ++ +N
Sbjct: 217 ---YQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVND 273
Query: 276 LFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSR 315
+ ++ + L + ++ +++ L + L R
Sbjct: 274 VCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQR 313
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 87.7 bits (217), Expect = 6e-20
Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 36/223 (16%)
Query: 392 QNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIR 451
+ ++ A++G DL V+A++ H+ IE+F ++E
Sbjct: 22 EENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIE------------------- 62
Query: 452 KALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKAS 511
D +L + R + ++ + + ++A + F A+
Sbjct: 63 -RARSDEGQLSPATRGA------YRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAAT 115
Query: 512 NLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQ 571
L+E E ++ + M +LE +E + +Q
Sbjct: 116 KELMWLNEKEEEEVGFD---WSDRNTNMTAKKESYSAL-------MRELELKEKKIKELQ 165
Query: 572 DRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLK 614
+ G+ L+ + HPA +E++ AA+Q+QW+W+LQL C+E HLK
Sbjct: 166 NAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLK 208
Score = 36.9 bits (85), Expect = 0.011
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 16/125 (12%)
Query: 510 ASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSA 569
+L + ++E + + DL S+E + H+ +E+ +
Sbjct: 14 LQDLLAWVEENQHRVDGA---EWGVDLPSVEAQLGSHRGLHQ-------SIEEFRAKIER 63
Query: 570 VQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDA 629
+ L A + + Q+A LL + + L+ H F
Sbjct: 64 ARSDEGQLSPATRGA---YRDCLGRLDLQYAKLLNSS---KARLRSLESLHSFVAAATKE 117
Query: 630 ETWIN 634
W+N
Sbjct: 118 LMWLN 122
Score = 35.3 bits (81), Expect = 0.037
Identities = 27/155 (17%), Positives = 42/155 (27%), Gaps = 20/155 (12%)
Query: 181 ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELES-- 238
LH + E A E D L RL + + + RL LES
Sbjct: 49 GLHQSIEEFRAKIERARSDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLH 108
Query: 239 -----------RINEEARRL-------DRLHPLDAKHNVDVLEHDLRQAEENINTLFSDV 280
+NE+ + K + L +L E+ I L +
Sbjct: 109 SFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAG 168
Query: 281 QTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSR 315
L +P + L +W + L
Sbjct: 169 DRLLREDHPARPTVESFQAALQTQWSWMLQLCCCI 203
Score = 34.2 bits (78), Expect = 0.072
Identities = 22/176 (12%), Positives = 49/176 (27%), Gaps = 33/176 (18%)
Query: 216 QRLAEKVTREMKRVDGRLEELESRINEE--ARRLDRLHPLDAKHNVDVLEHDLRQAEENI 273
L + R ++ + +EE + R++ L + H L + + I
Sbjct: 4 MELEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRG--LHQSIEEFRAKI 61
Query: 274 NTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTV 333
SD L + +L ++ L + +RL
Sbjct: 62 ERARSDEGQLSP---ATRGAYRDCLGRLDLQYAKLLNSSKARL----------------- 101
Query: 334 TRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQ 389
L ++ A + + W+ K + D+ + A+ +
Sbjct: 102 ---------RSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYS 148
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 92.1 bits (228), Expect = 7e-20
Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 45/244 (18%)
Query: 392 QNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIR 451
+ A++ +G DL V+ I H+ N I + +++ A + +
Sbjct: 19 RQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKAD-------LREKSAI 71
Query: 452 KALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKAS 511
L E+ + LL+ FER + + + S
Sbjct: 72 YQLEEEYENLLKA-----------------------SFERMDHLRQ-----LQNIIQATS 103
Query: 512 NLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQ 571
+++ E ++ MS LE +E + + ++
Sbjct: 104 REIMWINDCEEEELLY---DWSDKNTNIAQKQEAFSIR-------MSQLEVKEKELNKLK 153
Query: 572 DRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAET 631
+ L+L HPA+ IEAYM +Q+QW+W+LQ+ C++ HLK A Y QF+ E + E
Sbjct: 154 QESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEA 213
Query: 632 WINK 635
++
Sbjct: 214 YLKG 217
Score = 38.9 bits (90), Expect = 0.004
Identities = 29/370 (7%), Positives = 98/370 (26%), Gaps = 89/370 (24%)
Query: 233 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQAS 292
E + ++ +D + +V+ + R +I + ++
Sbjct: 11 TSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIK-----ADL 65
Query: 293 DLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHF 352
+ +L + + L R+ L
Sbjct: 66 REKSAIYQLEEEYENLLKASFERM--------------------------DHLRQLQNII 99
Query: 353 RALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQA 412
+A I W+ + + D+ + + +
Sbjct: 100 QATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMS------------------- 140
Query: 413 EIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQL 472
+ +E+ + L +++D+L+ P+ ++
Sbjct: 141 --QLEVKEKEL----------------------------NKLKQESDQLVLNQHPASDKI 170
Query: 473 R-RLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRINAP 531
+ + + + + ++ + F E A + ++ L + ++ +
Sbjct: 171 EAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEE-AQSTEAYLKGLQDSIRKK---Y 226
Query: 532 VPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAY 591
L+HL+ Q K+ E + + + + Q + ++ + ++
Sbjct: 227 PCDKNMPLQHLLEQIKELEKERE----KILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNK 282
Query: 592 MAAMQSQWAW 601
+++ +
Sbjct: 283 PIILRALCDY 292
Score = 38.1 bits (88), Expect = 0.007
Identities = 26/265 (9%), Positives = 75/265 (28%), Gaps = 55/265 (20%)
Query: 195 LAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESR-------------IN 241
+ ++ + ++ +++ + +L E+ +K R++ L IN
Sbjct: 51 IGDYRWQLDKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWIN 110
Query: 242 EEARRL-------DRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDL 294
+ + + + L E+ +N L + L ++P + +
Sbjct: 111 DCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKI 170
Query: 295 HKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTH--- 351
+ L +W + + + L + +
Sbjct: 171 EAYMDTLQTQWSWILQITKCI--------------------------DVHLKENAAYFQF 204
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGV- 410
F Q ++K I++ +Q + + + +I E Y +Q +
Sbjct: 205 FEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILE--YKRQVQNLV 262
Query: 411 ---QAEIAIHQREQNIIEQFHTRVE 432
+ + + R + +
Sbjct: 263 NKSKKIVQLKPRNPDYRSNKPIILR 287
Score = 37.8 bits (87), Expect = 0.010
Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 4/61 (6%)
Query: 435 IAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPS----DPQLRRLRREMDEVNRLFDEFE 490
AK M L + + S D R+++ + + + +
Sbjct: 387 TIAKLKTMRQEDYMKTIADLELHYQEFIRNSQGSEMFGDDDKRKIQSQFTDAQKHYQTLV 446
Query: 491 R 491
Sbjct: 447 I 447
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 88.2 bits (218), Expect = 2e-19
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F A+ L+E E ++ + M +LE +E
Sbjct: 13 FVAAATKELMWLNEKEEEEVGF---DWSDRNTNMTAKKESYSAL-------MRELELKEK 62
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWRE 625
+ +Q+ G+ L+ + HPA +E++ AA+Q+QW+W+LQL C+E HLK A Y QF+ +
Sbjct: 63 KIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSD 122
Query: 626 MKDAETWINK 635
+++AE + K
Sbjct: 123 VREAEGQLQK 132
Score = 43.1 bits (101), Expect = 2e-04
Identities = 27/227 (11%), Positives = 66/227 (29%), Gaps = 37/227 (16%)
Query: 212 LDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEE 271
L+ L T+E+ ++ + EE + + K + L +L E+
Sbjct: 7 LESLHSFVAAATKELMWLNEKEEEEVGFDWSD----RNTNMTAKKESYSALMRELELKEK 62
Query: 272 NINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEER 331
I L + L +P + L +W + L
Sbjct: 63 KIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCI---------------- 106
Query: 332 TVTRQTRTVMETRLVDTNTH---FRALQEAIEWVKNKLAQIQE---ADYGSDLQGVQAEI 385
E L + + F ++EA ++ ++ D + + ++ +
Sbjct: 107 ----------EAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLL 156
Query: 386 AIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVE 432
Q E+ + + + + +A + + R + +
Sbjct: 157 QDAQDEKEQLNEYKG-HLSGLAKRAKAVVQLKPRHPAHPMRGRLPLL 202
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 88.1 bits (218), Expect = 4e-19
Identities = 49/241 (20%), Positives = 86/241 (35%), Gaps = 31/241 (12%)
Query: 396 AQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALN 455
+ + D +G + H R+Q +E + ++ L
Sbjct: 25 LYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK--------------------QLA 64
Query: 456 EDADKLLEEGDPSDPQLRRLRREMDE-VNRLFDEFERRARAEEDMKNATKLFTEKASNLQ 514
A LL G P Q+ RL+ ++D+ L D E R R E+M + +L E +L+
Sbjct: 65 SRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRE-TDDLE 123
Query: 515 SKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRG 574
+ E E S + +D D + L + +DF + + V
Sbjct: 124 QWISEKELVASSP---EMGQDFDHVTLLRDKFRDFARET------GAIGQERVDNVNAFI 174
Query: 575 EALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWIN 634
E LI H A I + + WA LL+L L + H+++ + I+
Sbjct: 175 ERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLID 234
Query: 635 K 635
+
Sbjct: 235 E 235
Score = 67.7 bits (165), Expect = 2e-12
Identities = 50/403 (12%), Positives = 103/403 (25%), Gaps = 85/403 (21%)
Query: 217 RLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTL 276
A++ + + + E E + + D + + + NI L
Sbjct: 4 NEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQL 63
Query: 277 FSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQ 336
S Q L +P+ + + ++ + + L+ + R
Sbjct: 64 ASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHL----------- 112
Query: 337 TRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIA 396
R + +W+ K + G D V +
Sbjct: 113 ------------FQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFR------- 153
Query: 397 QIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNE 456
+ RV+ +N
Sbjct: 154 ---------------------DFARETGAIGQERVD--------------------NVNA 172
Query: 457 DADKLLEEGDPSDPQLRRLRREMDEV-NRLFDEFERRARAEEDMKNATKLFTEKASNLQS 515
++L++ G + + ++E+ L + + R + + + + + +
Sbjct: 173 FIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHR-YFYTGAEILG 231
Query: 516 KLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGE 575
+DE R L V D + E H FE D+ +Q QD
Sbjct: 232 LIDEKHREL----PEDVGLDASTAESFHRVHTAFE-------RDVHLLGVQVQQFQDVAT 280
Query: 576 ALI-LQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAA 617
L A+ I+ + + W LL T L A
Sbjct: 281 RLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTA 323
Score = 51.1 bits (122), Expect = 4e-07
Identities = 42/294 (14%), Positives = 97/294 (32%), Gaps = 37/294 (12%)
Query: 108 ASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLT 167
A W+ E+ Y+ P + R + V R+ ++L Q L
Sbjct: 13 ADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQ-RAVEDYGRNIKQLASRAQGLL 71
Query: 168 KYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMK 227
GE I ++++++ L +E+ L++ L +L + +
Sbjct: 72 SAGHPEGEQIIR---LQGQVDKHYAGLKDVAEERKRKLENMYH----LFQLKRETDDLEQ 124
Query: 228 RVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQA-EENINTLFSDVQTLREG 286
+ + S E + D + L K + +E ++ + + ++ L +
Sbjct: 125 WISEKELVASSP--EMGQDFDHVTLLRDKF--RDFARETGAIGQERVDNVNAFIERLIDA 180
Query: 287 RYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLV 346
+ +A+ + + L++ W L L+ TR +
Sbjct: 181 GHSEAATIAEWKDGLNEMWADLLELI-----------------------DTRMQLLAASY 217
Query: 347 DTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQE 400
D + +F E + + K ++ E D G D ++ +H + + +
Sbjct: 218 DLHRYFYTGAEILGLIDEKHRELPE-DVGLDASTAESFHRVHTAFERDVHLLGV 270
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 74.6 bits (183), Expect = 2e-15
Identities = 44/222 (19%), Positives = 76/222 (34%), Gaps = 32/222 (14%)
Query: 396 AQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALN 455
A + DYG DL V + HQ + I R++ LN
Sbjct: 24 ALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLK--------------------DLN 63
Query: 456 EDADKLLEEGDPSDPQLRRLRREMDEV-NRLFDEFERRARAEEDMKNATKLFTEKASNLQ 514
AD L+ Q++ R ++ R+ R + + F + + +
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRD-MDDEE 122
Query: 515 SKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRG 574
S + E + + S RDL +++L +HK ++L E V D G
Sbjct: 123 SWIKEKKLLVSSE---DYGRDLTGVQNLRKKHKRL-------EAELAAHEPAIQGVLDTG 172
Query: 575 EALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHA 616
+ L + + I+ +A W L QLA L+ +
Sbjct: 173 KKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 58.0 bits (140), Expect = 1e-09
Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 499 MKNATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMS 558
M N + F + L E E L S +DL S+ +L+ +H+ E+
Sbjct: 1 MANKQQNFNTGIKDFDFWLSEVEALLASE---DYGKDLASVNNLLKKHQLLEA------- 50
Query: 559 DLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAY 618
D+ E + + + ++L+ ++ + ++ + +A L +
Sbjct: 51 DISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR 110
Query: 619 YHQFWREMKDAETWINK 635
HQF+R+M D E+WI +
Sbjct: 111 LHQFFRDMDDEESWIKE 127
Score = 46.8 bits (111), Expect = 6e-06
Identities = 35/182 (19%), Positives = 66/182 (36%), Gaps = 23/182 (12%)
Query: 219 AEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFS 278
+ +K D L E+E+ + E D + +LE D+ E+ + L S
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 279 DVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTR 338
+L S + + + ++ R+ ++S+ +R R
Sbjct: 65 QADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAAR----------------------R 102
Query: 339 TVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQI 398
+ + FR + + W+K K + DYG DL GVQ H+R + +A
Sbjct: 103 AKLNESH-RLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAH 161
Query: 399 QE 400
+
Sbjct: 162 EP 163
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 72.3 bits (177), Expect = 6e-15
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F A +L S ++ R + ++ PRD+ S+E L+ H+ +++E R
Sbjct: 9 FFSMARDLLSWMESIIRQIETQ---ERPRDVSSVELLMKYHQGI-------NAEIETRSK 58
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWRE 625
FSA + GE+L+ + H A++ I + + S+ + + L+ QF R+
Sbjct: 59 NFSACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRD 118
Query: 626 MKDAETWINK 635
AE W+
Sbjct: 119 ASVAEAWLIA 128
Score = 53.0 bits (127), Expect = 3e-08
Identities = 37/238 (15%), Positives = 76/238 (31%), Gaps = 65/238 (27%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQ 411
F ++ + W+++ + QI+ + D+ V+ + H QG+
Sbjct: 10 FSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYH-------------------QGIN 50
Query: 412 AEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQ 471
AEI + + A E + LL+ + +
Sbjct: 51 AEIETRSKNFS------------------------------ACLELGESLLQRQHQASEE 80
Query: 472 LRRLRREMDEVNRLFDEFERRARAEEDMKNATK---LFTEKASNLQSKLDEAERTLHSRI 528
+R + +V E + A + F+ AS ++ L E L S
Sbjct: 81 IREK---LQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASG- 136
Query: 529 NAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAK 586
+DS+E L+ +H+ FE +F+A++ + + A +
Sbjct: 137 --DFGHTVDSVEKLIKRHEAFE-------KSTASWAERFAALEKPTTLELKERQIAER 185
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 73.0 bits (179), Expect = 7e-15
Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 32/223 (14%)
Query: 396 AQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALN 455
+ DYG DL GVQ H+R + + ++ ++
Sbjct: 21 LLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQ--------------------SVL 60
Query: 456 EDADKLLEEGDPSDPQLRRLRREMDEV-NRLFDEFERRARAEEDMKNATKLFTEKASNLQ 514
+ KL ++ ++++ + + L R + E+ + F +
Sbjct: 61 DTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQ-FVANVEEEE 119
Query: 515 SKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRG 574
+ ++E + S L +++ L+ +H+ FE+ D + + + V G
Sbjct: 120 AWINEKMTLVASE---DYGDTLAAIQGLLKKHEAFET-------DFTVHKDRVNDVCANG 169
Query: 575 EALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAA 617
E LI +++ + I A M ++ + + L + A + L +
Sbjct: 170 EDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 212
Score = 66.1 bits (161), Expect = 2e-12
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F + +S + E + + S RDL +++L +HK E+ +L E
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSE---DYGRDLTGVQNLRKKHKRLEA-------ELAAHEP 54
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWRE 625
+V D G+ L + + I+ +A W L QLA L+ + Y QF
Sbjct: 55 AIQSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVAN 114
Query: 626 MKDAETWINK 635
+++ E WIN+
Sbjct: 115 VEEEEAWINE 124
Score = 50.3 bits (120), Expect = 4e-07
Identities = 28/213 (13%), Positives = 73/213 (34%), Gaps = 12/213 (5%)
Query: 103 EYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHI 162
++ W++EK + ++ L ++ L R E + +Q +
Sbjct: 4 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAEL----AAHEPAIQSV 59
Query: 163 FQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKV 222
K +D + + + +W L + L++ ++ Q+ V
Sbjct: 60 LDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE----YQQFVANV 115
Query: 223 TREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQT 282
E ++ ++ + S + L + L KH + E D ++ +N + ++ +
Sbjct: 116 EEEEAWINEKMTLVASE--DYGDTLAAIQGLLKKH--EAFETDFTVHKDRVNDVCANGED 171
Query: 283 LREGRYPQASDLHKRVQKLHQRWVALRSLLHSR 315
L + ++ +++ L + L R
Sbjct: 172 LIKKNNHHVENITAKMKGLKGKVSDLEKAAAQR 204
Score = 42.2 bits (99), Expect = 2e-04
Identities = 30/185 (16%), Positives = 65/185 (35%), Gaps = 27/185 (14%)
Query: 218 LAEKVTREMKRVDGRLEELESRINEE--ARRLDRLHPLDAKHNVDVLEHDLRQAEENINT 275
+ + R+M + ++E + ++ E R L + L KH LE +L E I +
Sbjct: 1 MVHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKR--LEAELAAHEPAIQS 58
Query: 276 LFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTR 335
+ + L + ++ +R+ + W L+ L +R S+ +
Sbjct: 59 VLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEY---------- 108
Query: 336 QTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNII 395
++E W+ K+ + DYG L +Q + H+ +
Sbjct: 109 -------------QQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDF 155
Query: 396 AQIQE 400
++
Sbjct: 156 TVHKD 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 77.4 bits (190), Expect = 1e-14
Identities = 99/574 (17%), Positives = 165/574 (28%), Gaps = 203/574 (35%)
Query: 72 IITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTL 131
+++ SL V P A + SQ + E L E T + P+T
Sbjct: 10 TLSH-GSLEHVLLVPTASFFIA---SQLQ--E--QFNKILP----EPTEGFAADDEPTTP 57
Query: 132 IEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFED--VGEVDIDPELHIDVIER 189
E L + + V P + + + FE+ + DI H
Sbjct: 58 AE---LVGKFLGYVSSLVEPSKVG--QFDQVLNLCLTEFENCYLEGNDI----H------ 102
Query: 190 NWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDR 249
LAA +LQ+ L + + L + AR + +
Sbjct: 103 ----ALAA-----KLLQENDTTLVKTKELI-------------------KNYITARIMAK 134
Query: 250 LHPLDAKHNVDVLEHDLRQAEE-------------NINTLFSDVQTLREGRY-PQASDL- 294
P D K N L R E N + F +++ L + Y DL
Sbjct: 135 -RPFDKKSN-SAL---FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ-TYHVLVGDLI 188
Query: 295 -------------HKRVQKLHQRWVALRSLLHSRLVSP----LAS--MSFPVVEERTVTR 335
+K+ + + + L + +P L S +S P++ V
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI---GVI- 244
Query: 336 QTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNII 395
Q H+ + + + +L L+G Q ++
Sbjct: 245 QL------------AHYVVTAKLLGFTPGELRSY--------LKGATG------HSQGLV 278
Query: 396 --AQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMG-----AAQRN 448
I E D E F V I F +G A
Sbjct: 279 TAVAIAETDSW--------------------ESFFVSVRKAITVLFF-IGVRCYEAYPNT 317
Query: 449 AIRKALNEDADKLLEEGDPSDPQL--RRLRREMDEVNRLFDEFERRARAEED----MKNA 502
++ ++ ED+ + EG PS P L L +E +V ++ A + + N
Sbjct: 318 SLPPSILEDSLEN-NEGVPS-PMLSISNLTQE--QVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 503 TKLF-----------------TEKA-SNL-QSKLDEAERTL--HSR---INAPVPRDLDS 538
K KA S L QS++ +ER L +R + +P
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF------ 427
Query: 539 LEHLVLQHKDF-ESTLKNLMSDLEKREIQFSAVQ 571
H + DL K + F+A
Sbjct: 428 -------HSHLLVPASDLINKDLVKNNVSFNAKD 454
Score = 58.9 bits (142), Expect = 4e-09
Identities = 69/482 (14%), Positives = 137/482 (28%), Gaps = 166/482 (34%)
Query: 19 SKREGRQGVSSSQFCSVRDTASRLTSS----GDPNPSFSLTNVKWNDVDTHEIDEKSIIT 74
+KR + +S+ F +V + ++L + G+ + F +E
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF---------------EE----- 172
Query: 75 YISSLYDVFPEPPAVHPLYD---------SESQQRVNEYCDLASSLHLWMREK-----TA 120
+ LY + V L + + ++ W+
Sbjct: 173 -LRDLYQTYH--VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 121 YMQD--RNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDV----- 173
Y+ + P LI + +LA + P + L+ + T + + +
Sbjct: 230 YLLSIPISCP--LIGVIQLAHYVVTAKLLGFTPGE-----LRSYLKGATGHSQGLVTAVA 282
Query: 174 -GEVDIDPELH---IDVIERNWSRLL-----AAHQE------KDSILQDEIKRLDRLQRL 218
E D I +L ++ SIL+D ++
Sbjct: 283 IAETDSWESFFVSVRKAIT-----VLFFIGVRCYEAYPNTSLPPSILEDSLEN------- 330
Query: 219 AEKVTREMKRVDG-RLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENIN--- 274
E V M + E+++ +N+ L P + +E L +N+
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHL----PAGKQ-----VEISLVNGAKNLVVSG 381
Query: 275 ---TLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSF-PVVEE 330
+L+ TLR+ + P D + +R S F PV
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSR--IPFSER-------------KLKFSNRFLPV--- 423
Query: 331 RTVTRQTRTVMETRLVDT---NTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAI 387
++H L A + + L + + D+Q I +
Sbjct: 424 -----------------ASPFHSHL--LVPASDLINKDLVKNNVSFNAKDIQ-----IPV 459
Query: 388 HQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQ-FHTRVE-----HCIAAKFLA 441
+ GSDL+ + I+ + I++ V+ A L
Sbjct: 460 YDTFD-----------GSDLRVLSGSIS-----ERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 442 MG 443
G
Sbjct: 504 FG 505
Score = 56.2 bits (135), Expect = 3e-08
Identities = 61/323 (18%), Positives = 95/323 (29%), Gaps = 82/323 (25%)
Query: 345 LVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIA-------IHQREQNIIAQ 397
LV T + F A Q ++ K L + E D AE+ E + + Q
Sbjct: 21 LVPTASFFIASQLQEQFNKI-LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 398 IQ----------EADY--GSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAA 445
E Y G+D+ + A++ + + + I A A
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN------DTTLVKTKELIKNYITARIMA 133
Query: 446 QRNAIRK---ALNEDAD----KLLEE----GDPSD--PQLRRL-RREMDEVNRLFDE--- 488
+R +K AL +L+ G+ D +LR L + V L
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 489 -FERRARAEEDMKNATKLFTEKASNLQSKLDEAERT-----LHSRINAPVPRDLDSLEHL 542
R D A K+FT + N+ L+ T L S P+ S +
Sbjct: 194 TLSELIRTTLD---AEKVFT-QGLNILEWLENPSNTPDKDYLLS---IPI-----SCPLI 241
Query: 543 VL-QHKDFESTLKNL-MSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWA 600
+ Q + T K L + E R + L+ A I A W
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSY-LKGATGHSQGLV-----TAVAI-----AETDSWE 290
Query: 601 WLLQLALCLETHLKHAAYYHQFW 623
T L F+
Sbjct: 291 SFFVSVRKAITVL--------FF 305
Score = 41.6 bits (97), Expect = 0.001
Identities = 29/247 (11%), Positives = 69/247 (27%), Gaps = 77/247 (31%)
Query: 428 HTRVEHCI---AAKFLAMGAAQ-RNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVN 483
H +EH + A F A+Q + K L E + + +P+ P E
Sbjct: 13 HGSLEHVLLVPTASFFI--ASQLQEQFNKILPEPTEGFAADDEPTTPA---------E-- 59
Query: 484 RLFDEFERRARAEEDMKNATKL-FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHL 542
L +F L + S ++ ++ ++ L E+
Sbjct: 60 -LVGKF---------------LGYVS------SLVEPSKVGQFDQVLNLC---LTEFENC 94
Query: 543 VLQHKDFESTLKNLMSDLEKREIQ--------FSAVQDRGEALILQHHPA---------A 585
L+ D + L+ + + ++ +A + + A A
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 586 KC---------IEAYMAAMQSQW--------AWLLQLALCLETHLKHAAYYHQFWREMKD 628
+ + Y ++ + + A L ++ + + + +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 629 AETWINK 635
W+
Sbjct: 215 ILEWLEN 221
Score = 31.9 bits (72), Expect = 0.87
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 24/101 (23%)
Query: 538 SLEHLVLQHKDFESTL---KNLMSDLEK-REIQFSA-VQDRGEALILQHHPAAKCIE--- 589
S L L H E L + +E QF+ + + E P E
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTP-AELVG 62
Query: 590 ---AYMAAM-----QSQWAWLLQLALC-LE-THLK----HA 616
Y++++ Q+ +L L L E +L+ HA
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Score = 31.6 bits (71), Expect = 1.1
Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 29/108 (26%)
Query: 379 QGVQAE-IAIHQREQNIIAQI--QEAD------YG-SDLQGVQ---AEIAIHQREQNIIE 425
QG Q + + + + + AQ AD YG S L V + IH
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH-------- 1675
Query: 426 QFHTRVEHCIAAKFLAM-------GAAQRNAIRKALNEDADKLLEEGD 466
F I + AM G + I K +NE + +
Sbjct: 1676 -FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 74.6 bits (183), Expect = 1e-14
Identities = 37/286 (12%), Positives = 77/286 (26%), Gaps = 62/286 (21%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQ 411
R + + +W+ + + G D + V + I +
Sbjct: 12 NREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERV-------- 63
Query: 412 AEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQ 471
+N AD+L+ G
Sbjct: 64 ----------------------------------------DTVNHLADELINSGHSDAAT 83
Query: 472 LRRLRREMDEV-NRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRINA 530
+ + ++E L + + R + K + A + ++ + + L
Sbjct: 84 IAEWKDGLNEAWADLLELIDTRTQILAASYELHKFY-HDAKEIFGRIQDKHKKL----PE 138
Query: 531 PVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALI-LQHHPAAKCIE 589
+ RD +++E L H FE D++ Q +Q+ L A I+
Sbjct: 139 ELGRDQNTVETLQRMHTTFEH-------DIQALGTQVRQLQEDAARLQAAYAGDKADDIQ 191
Query: 590 AYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWREMKDAETWINK 635
+ W LL L +F+ ++D W+
Sbjct: 192 KRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMED 237
Score = 70.4 bits (172), Expect = 3e-13
Identities = 53/405 (13%), Positives = 130/405 (32%), Gaps = 89/405 (21%)
Query: 214 RLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQA-EEN 272
++ ++ RE+ ++ + E E D H + D +E
Sbjct: 3 HMRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQER 62
Query: 273 INTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERT 332
++T+ L + A+ + + L++ W L L+
Sbjct: 63 VDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELI-------------------- 102
Query: 333 VTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQ 392
TRT + + + + +E +++K ++ E
Sbjct: 103 ---DTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPE--------------------- 138
Query: 393 NIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRK 452
+ G D V+ +H ++ I+ T+V
Sbjct: 139 ---------ELGRDQNTVETLQRMHTTFEHDIQALGTQVR-------------------- 169
Query: 453 ALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARA-EEDMKNATKL--FTEK 509
L EDA +L +++ +EV + + + + F
Sbjct: 170 QLQEDAARLQAAYAGDKAD--DIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSM 227
Query: 510 ASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSA 569
+L +++ R + ++ PRD+ S+E L+ H+ ++ +++ R F+
Sbjct: 228 VRDLMLWMEDVIRQIEAQ---EKPRDVSSVELLMNNHQGIKA-------EIDARNDSFTT 277
Query: 570 VQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLK 614
+ G++L+ + H A++ I+ + + + ++ L+
Sbjct: 278 CIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLR 322
Score = 64.6 bits (157), Expect = 2e-11
Identities = 52/310 (16%), Positives = 98/310 (31%), Gaps = 42/310 (13%)
Query: 95 SESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQR 154
S + R+ + L W+ E+ + L F + Q
Sbjct: 2 SHMRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQE 61
Query: 155 DKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDR 214
+ H+ +L + D + W+ LL + IL
Sbjct: 62 RVDTVNHLADELINSGHSDAATIAE---WKDGLNEAWADLLELIDTRTQILAASY----E 114
Query: 215 LQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENIN 274
L + R+ + ++L E R + + L H EHD++ +
Sbjct: 115 LHKFYHDAKEIFGRIQDKHKKLP---EELGRDQNTVETLQRMH--TTFEHDIQALGTQVR 169
Query: 275 TLFSDVQTLRE-GRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTV 333
L D L+ +A D+ KR ++ + W +L SR
Sbjct: 170 QLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESR------------------ 211
Query: 334 TRQTRTVMETRLVDTNTHFR---ALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQR 390
RLVDT FR +++ + W+++ + QI+ + D+ V+ + HQ
Sbjct: 212 --------RVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQG 263
Query: 391 EQNIIAQIQE 400
+ I +
Sbjct: 264 IKAEIDARND 273
Score = 58.0 bits (140), Expect = 3e-09
Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 9/130 (6%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
+ +L+ + E E S + +D + + L + ++F N+ +
Sbjct: 11 LNREVDDLEQWIAEREVVAGSH---ELGQDYEHVTMLQERFREFARDTGNI------GQE 61
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWRE 625
+ V + LI H A I + + WA LL+L L + H+F+ +
Sbjct: 62 RVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHD 121
Query: 626 MKDAETWINK 635
K+ I
Sbjct: 122 AKEIFGRIQD 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.0 bits (186), Expect = 2e-14
Identities = 89/609 (14%), Positives = 201/609 (33%), Gaps = 166/609 (27%)
Query: 155 DKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQ--DEIKRL 212
+ Q+ ++D+ FED + D + DV + + + + +E D I+ D +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCK---DVQD--MPKSILSKEEIDHIIMSKDAVSGT 64
Query: 213 DRL-QRLAEKVTREMKR-VDGRLEE----LESRINEEARRLDRLHPLDAKHNVDVLEHDL 266
RL L K +++ V+ L L S I E R+ P
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-----P----------SMMT 109
Query: 267 RQAEENINTLFSDVQTLREG---RYPQASDLHKRVQKL-HQRWVALRSLLH-------SR 315
R E + L++D Q + R L + + +L + V L+ +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV----LIDGVLGSGKTW 165
Query: 316 LVSPLAS-------MSFPV----VEERTVTRQTRTVMET--RLVDTNTHFRALQEA---- 358
+ + M F + ++ +++ +D N R+ +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 359 -IEWVKNKLAQ-IQEADYGSDLQ--------------GVQAEIAIHQREQNIIAQIQEAD 402
I ++ +L + ++ Y + L + +I + R + + + A
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AA 284
Query: 403 YGSDLQGVQAEIAIHQRE-QNIIEQF-HTRV-----EHC-IAAKFLAM-GAAQRNAI--- 450
+ + + + E ++++ ++ R E + L++ + R+ +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 451 -------RKALNEDADKLLEEGDPSDPQ-------------------LRRLRREMD--EV 482
L + L +P++ + L + ++ +V
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 483 NRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRI----NAPVPRDLDS 538
+ ++ + + E+ K +T L+ KL+ E LH I N P D D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDD 463
Query: 539 LE--------------HLV-LQHKDFESTLKNLMSDLE--KREIQFS--AVQDRGEAL-- 577
L HL ++H + + + + D +++I+ A G L
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 578 ----------ILQHHPA-AKCIEAYM--------AAMQSQWAWLLQLALCLETHLKHAAY 618
I + P + + A + + S++ LL++AL E A
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE----DEAI 579
Query: 619 YHQFWREMK 627
+ + ++++
Sbjct: 580 FEEAHKQVQ 588
Score = 67.6 bits (164), Expect = 9e-12
Identities = 73/595 (12%), Positives = 177/595 (29%), Gaps = 157/595 (26%)
Query: 47 DPNPSFSLTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCD 106
N F ++ +K + + I LY+ + ++ + R+ Y
Sbjct: 88 RINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYND-------NQVFAKYNVSRLQPYLK 139
Query: 107 LASSLHLWMREKTAYMQDRNFPSTLIE-MK---K--LAADSAR-FRTEEVPP-------- 151
L + A ++ R + LI+ + K +A D ++ +
Sbjct: 140 L----------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 152 RQRDK-----QRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDS--I 204
+ + + LQ + + + + + +L I I+ RLL + ++ +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 205 LQD-----EIKRLD-RLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHN 258
L + + + L TR + D + I+ + H+
Sbjct: 250 LLNVQNAKAWNAFNLSCKILL--TTRFKQVTDFLSAATTTHISLD-------------HH 294
Query: 259 VDVLEHDLRQAEENINTLFSDVQTLREGRYP-QASDLH--------KRVQKLHQRWVALR 309
L D + + L R P + + + ++ W +
Sbjct: 295 SMTLTPD--EVKS----LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 310 SLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAI----EWVKNK 365
+ +L + + S V+E E R F L ++ +
Sbjct: 349 HVNCDKLTTII-ESSLNVLEPA----------EYR-----KMFDRL--SVFPPSAHIPTI 390
Query: 366 LAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIE 425
L + D+ + +++ + + + Q + + + E+ + +
Sbjct: 391 LLSL----IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE---Y 443
Query: 426 QFHTR-VEHCIAAKFLAMGAAQRNAIRKALNEDADKL-------------LEEGDPSDPQ 471
H V+H N + ++D L+ + +
Sbjct: 444 ALHRSIVDH-------------YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-- 488
Query: 472 LRRLRREMDEVNRLFDEF---ERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRI 528
M +F +F E++ R + NA+ N +L + +
Sbjct: 489 ------RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL----NTLQQLKFYKP--YICD 536
Query: 529 NAPVP-RDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHH 582
N P R ++++ + + ++ NL+ ++ A+ EA+ + H
Sbjct: 537 NDPKYERLVNAILDFLPKIEE------NLICSKYTDLLRI-ALMAEDEAIFEEAH 584
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 69.9 bits (171), Expect = 9e-14
Identities = 29/228 (12%), Positives = 75/228 (32%), Gaps = 35/228 (15%)
Query: 392 QNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIR 451
+ D L + + H ++ I+ +
Sbjct: 17 SITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQ------------------- 57
Query: 452 KALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEE---DMKNATKLFTE 508
+ E +K+++ +DP+ L + ++ ++ +D R + + F +
Sbjct: 58 -RVKESGEKVIQ--GQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQK 114
Query: 509 KASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFS 568
A ++ L E TL + P L++ E + + +DF + +E +
Sbjct: 115 DAKQAEAILSNQEYTLA---HLEPPDSLEAAEAGIRKFEDF-------LGSMENNRDKVL 164
Query: 569 AVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHA 616
+ D G L+ + + + I+ + ++ + + A L+
Sbjct: 165 SPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDN 212
Score = 61.1 bits (148), Expect = 1e-10
Identities = 23/131 (17%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F + + Q+ L ++ + S +P L E L+ QH + +++ +
Sbjct: 5 FLQDLDDFQAWLSITQKAVASE---DMPESLPEAEQLLQQHAG-------IKDEIDGHQD 54
Query: 566 QFSAVQDRGEALIL-QHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWR 624
+ V++ GE +I Q P + + + + W L ++ L + +F +
Sbjct: 55 SYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQK 114
Query: 625 EMKDAETWINK 635
+ K AE ++
Sbjct: 115 DAKQAEAILSN 125
Score = 38.7 bits (90), Expect = 0.002
Identities = 21/186 (11%), Positives = 59/186 (31%), Gaps = 28/186 (15%)
Query: 218 LAEKVTREMKRVDGRLEELESRINEE--ARRLDRLHPLDAKHNVDVLEHDLRQAEENINT 275
+ + +++ L + + E L L +H ++ ++ +++
Sbjct: 1 MEQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAG--IKDEIDGHQDSYQR 58
Query: 276 LFSDVQTLREG-RYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVT 334
+ + + +G P+ L +R++ L W AL + SR
Sbjct: 59 VKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESR------------------- 99
Query: 335 RQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNI 394
+ L + ++A + N+ + + L+ +A I +
Sbjct: 100 ---SHTLAQCL-GFQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGS 155
Query: 395 IAQIQE 400
+ ++
Sbjct: 156 MENNRD 161
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 67.7 bits (165), Expect = 4e-13
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 9/130 (6%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
+ +L+ + E E S + +D D + L + +DF + +
Sbjct: 6 LKRETDDLEQWISEKELVASSP---EMGQDFDHVTLLRDKFRDFARETGAI------GQE 56
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWRE 625
+ V E LI H A I + + WA LL+L L + H+++
Sbjct: 57 RVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYT 116
Query: 626 MKDAETWINK 635
+ I++
Sbjct: 117 GAEILGLIDE 126
Score = 59.6 bits (144), Expect = 3e-10
Identities = 37/272 (13%), Positives = 72/272 (26%), Gaps = 62/272 (22%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQ 411
R + +W+ K + G D V +
Sbjct: 7 KRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFA------------------- 47
Query: 412 AEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPSDPQ 471
+ RV++ N ++L++ G
Sbjct: 48 ---------RETGAIGQERVDNV--------------------NAFIERLIDAGHSEAAT 78
Query: 472 LRRLRREMDEV-NRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRINA 530
+ + ++E+ L + + R + + + + + + +DE R L
Sbjct: 79 IAEWKDGLNEMWADLLELIDTRMQLLAASYDLHR-YFYTGAEILGLIDEKHREL----PE 133
Query: 531 PVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHP-AAKCIE 589
V D + E H FE +L +Q QD L + A+ I+
Sbjct: 134 DVGLDASTAESFHRVHTAFE-------RELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQ 186
Query: 590 AYMAAMQSQWAWLLQLALCLETHLKHAAYYHQ 621
+ + W LL T L A +
Sbjct: 187 NKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 54.6 bits (131), Expect = 1e-08
Identities = 31/215 (14%), Positives = 53/215 (24%), Gaps = 15/215 (6%)
Query: 103 EYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHI 162
+ L W+ EK + L F E Q +
Sbjct: 5 QLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAF 64
Query: 163 FQDLTKYFEDVGEVDIDP-ELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEK 221
+ L G + D + W+ LL + +L L R +
Sbjct: 65 IERLIDA----GHSEAATIAEWKDGLNEMWADLLELIDTRMQLL-AASYDLHRYFYTGAE 119
Query: 222 VTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQ 281
+ + L E A R+H E +L +
Sbjct: 120 ILGLIDEKHRELPEDVGLDASTAESFHRVH--------TAFERELHLLGVQVQQFQDVAT 171
Query: 282 TLRE-GRYPQASDLHKRVQKLHQRWVALRSLLHSR 315
L+ +A + + Q++ W AL R
Sbjct: 172 RLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGR 206
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 67.6 bits (165), Expect = 5e-13
Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 10/130 (7%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F +L S ++ + S + +D+ E L+ +H++ ++++ R
Sbjct: 18 FLSDFRDLMSWINGIRGLVSSD---ELAKDVTGAEALLERHQEH-------RTEIDARAG 67
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQFWRE 625
F A + G+ L+ H A+ I+ + + + A L + + L F R+
Sbjct: 68 TFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRD 127
Query: 626 MKDAETWINK 635
+ AE W+
Sbjct: 128 CEQAENWMAA 137
Score = 66.5 bits (162), Expect = 1e-12
Identities = 37/215 (17%), Positives = 77/215 (35%), Gaps = 30/215 (13%)
Query: 392 QNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIR 451
I + + D+ G +A + HQ + I+ +
Sbjct: 30 NGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQ------------------- 70
Query: 452 KALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKAS 511
A + +LL G + P++++ +D+ ++ + R D +LF
Sbjct: 71 -AFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCE 129
Query: 512 NLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQ 571
++ + E L++ LDS+E L+ +H+DF+ + +E + +A+Q
Sbjct: 130 QAENWMAAREAFLNTE---DKGDSLDSVEALIKKHEDFDK-------AINVQEEKIAALQ 179
Query: 572 DRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLA 606
+ LI H A I + + +W L
Sbjct: 180 AFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQM 214
Score = 39.1 bits (91), Expect = 0.002
Identities = 30/195 (15%), Positives = 59/195 (30%), Gaps = 27/195 (13%)
Query: 206 QDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHD 265
LQR M ++G + S E A+ + L +H +
Sbjct: 6 HHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSD--ELAKDVTGAEALLERHQE--HRTE 61
Query: 266 LRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSF 325
+ Q L + + ++ +++ L Q L R
Sbjct: 62 IDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQR---------- 111
Query: 326 PVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEI 385
R +++ + ++ R ++A W+ + A + D G L V+A I
Sbjct: 112 ------------RMMLD-QCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALI 158
Query: 386 AIHQREQNIIAQIQE 400
H+ I +E
Sbjct: 159 KKHEDFDKAINVQEE 173
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 66.6 bits (162), Expect = 2e-12
Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 16/195 (8%)
Query: 207 DEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVLEHD 265
+EI+RL+RL+ LAEK ++ + E + ++ L + A + E D
Sbjct: 4 NEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESD 63
Query: 266 LRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSRLVSPLASMSF 325
L ++ + + + Q L E Y A +++ R QK+ +W L +L R
Sbjct: 64 LAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKR---------- 113
Query: 326 PVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEI 385
R + ++ET + W++ + +Q+ ++ +Q+ I
Sbjct: 114 -----REALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLI 168
Query: 386 AIHQREQNIIAQIQE 400
H++ + + +
Sbjct: 169 TAHEQFKATLPEADG 183
Score = 47.7 bits (113), Expect = 4e-06
Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 37/235 (15%)
Query: 399 QEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLAMGAAQRNAIRKALNEDA 458
Q+ + L V+A + H+ ++ + RVE + A
Sbjct: 39 QKDYESASLTEVRALLRKHEAFESDLAAHQDRVE--------------------QIAAIA 78
Query: 459 DKLLEEGDPSDPQLRRLRREMDEVNRLFDEF-----ERRARAEEDMKNATKL------FT 507
+L E + ++ +D +RR E K + F
Sbjct: 79 QELNELDYH---DAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFA 135
Query: 508 EKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQF 567
++A+ + ++ A L + ++ ++ L+ H+ F++TL + +
Sbjct: 136 KRAAPFNNWMEGAMEDLQDM---FIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQ 192
Query: 568 SAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQF 622
+ V+ ++ ++ + M ++++W + QL + L+
Sbjct: 193 NEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 247
Score = 32.3 bits (73), Expect = 0.41
Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 98 QQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQ 157
Q E+ A+ + WM +QD ++ E++ L +F+ +P ++Q
Sbjct: 128 DQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFK-ATLPEADGERQ 186
Query: 158 RLQHIFQDLTKYFEDVGEVDIDP----ELHIDVIERNWSRLLAAHQEKDSILQDEIKRL 212
+ I ++ K + + +D + W ++ +D LQ+E+ R
Sbjct: 187 SIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQ 245
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 58.4 bits (141), Expect = 3e-10
Identities = 28/174 (16%), Positives = 63/174 (36%), Gaps = 21/174 (12%)
Query: 446 QRNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARA-EEDMKNATK 504
++ + K+LE + ++ EV + F+ R + ++++
Sbjct: 5 EQFPKETVVESSGPKVLETAE-------EIQERRQEVLTRYQSFKERVAERGQKLEDSYH 57
Query: 505 L--FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEK 562
L F A +L + E L D +++ +H+ E+ +++
Sbjct: 58 LQVFKRDADDLGKWIMEKVNIL----TDKSYEDPTNIQGKYQKHQSLEA-------EVQT 106
Query: 563 REIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHA 616
+ S ++ E H A + +A++ ++ W LL+L L L A
Sbjct: 107 KSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRA 160
Score = 38.0 bits (88), Expect = 0.003
Identities = 16/132 (12%), Positives = 47/132 (35%), Gaps = 4/132 (3%)
Query: 185 DVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEA 244
+ I+ +L +Q + + ++L+ L + R+ + + E + + +++
Sbjct: 25 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHL-QVFKRDADDLGKWIMEKVNILTDKS 83
Query: 245 RR-LDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQ 303
+ KH LE +++ ++ L + + + +++L
Sbjct: 84 YEDPTNIQGKYQKHQS--LEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRH 141
Query: 304 RWVALRSLLHSR 315
W L L +
Sbjct: 142 LWDLLLELTLEK 153
Score = 30.3 bits (68), Expect = 1.2
Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 562 KREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQ 621
++ + + V+ G ++ A+ I+ + +++ + L+ + +
Sbjct: 5 EQFPKETVVESSGPKVLET----AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQV 60
Query: 622 FWREMKDAETWIN 634
F R+ D WI
Sbjct: 61 FKRDADDLGKWIM 73
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 57.2 bits (138), Expect = 6e-10
Identities = 22/157 (14%), Positives = 61/157 (38%), Gaps = 21/157 (13%)
Query: 453 ALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARA-EEDMKNATKL--FTEK 509
+++ K+LE + ++ +V + F+ + + ++++ + F
Sbjct: 2 SMDPSGVKVLETAE-------DIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRD 54
Query: 510 ASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSA 569
A L+ + E + +D +L+ + +H+ F ++++
Sbjct: 55 AEELEKWIQEKLQIASD----ENYKDPTNLQGKLQKHQAF-------EAEVQANSGAIVK 103
Query: 570 VQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLA 606
+ + G +I + H A++ I + + QW LL+
Sbjct: 104 LDETGNLMISEGHFASETIRTRLMELHRQWELLLEKM 140
Score = 37.2 bits (86), Expect = 0.005
Identities = 18/132 (13%), Positives = 50/132 (37%), Gaps = 4/132 (3%)
Query: 185 DVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEA 244
+ I+ ++L + + ++L+ R + R+ + ++ ++E ++E
Sbjct: 15 EDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRF-QFFQRDAEELEKWIQEKLQIASDEN 73
Query: 245 RR-LDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQ 303
+ L KH E +++ I L + + + + R+ +LH+
Sbjct: 74 YKDPTNLQGKLQKHQA--FEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHR 131
Query: 304 RWVALRSLLHSR 315
+W L + +
Sbjct: 132 QWELLLEKMREK 143
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 58.7 bits (142), Expect = 4e-09
Identities = 54/281 (19%), Positives = 121/281 (43%), Gaps = 13/281 (4%)
Query: 153 QRDKQRLQHIFQDLTKYFEDVGE-VDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKR 211
+ + + L+ L + + E + + EL+ + E RL A QE + IL + R
Sbjct: 877 EAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV-RLAAKKQELEEILHEMEAR 935
Query: 212 LDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHP--LDAKHNVDVLEHDLRQA 269
++ + ++++ E K++ ++ +LE ++ EE +L + A + +E D+
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 270 EENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLL--HSRLVSPLASMSFPV 327
E+ N L + + L E + SDL + + ++ L L H ++S L
Sbjct: 996 EDQNNKLTKERKLLEE----RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051
Query: 328 VEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAI 387
+ R + + +E D + LQ I +K +LA+ +E + + L ++ E +
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK-KEEELQAALARLEDETSQ 1110
Query: 388 HQREQNIIAQIQE--ADYGSDLQGVQAEIAIHQREQNIIEQ 426
I +++ +D DL+ +A ++++ + +
Sbjct: 1111 KNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151
Score = 32.5 bits (74), Expect = 0.56
Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 23/137 (16%)
Query: 445 AQRNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDM----K 500
++N +++ L + + E + RL + E+ + E E R EE+ +
Sbjct: 892 EEKNLLQEKLQAETELYAEAEE----MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQ 947
Query: 501 NATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDL 560
K ++ +L+ +L+E E + L L+ + +K + D+
Sbjct: 948 AEKKKMQQQMLDLEEQLEEEEAA---------------RQKLQLEKVTADGKIKKMEDDI 992
Query: 561 EKREIQFSAVQDRGEAL 577
E Q + + + L
Sbjct: 993 LIMEDQNNKLTKERKLL 1009
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Homo sapiens}
Length = 127
Score = 46.9 bits (112), Expect = 1e-06
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPEPPAV 89
DV+ + DEKSIITY+++ Y F + A+
Sbjct: 88 DVNVDQPDEKSIITYVATYYHYFSKMKAL 116
>1bhd_A Utrophin; calponin homology, actin binding, structural protein;
2.00A {Homo sapiens} SCOP: a.40.1.1
Length = 118
Score = 45.0 bits (107), Expect = 4e-06
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPEPPAV 89
DV D+KSII Y++SL++V P+ +
Sbjct: 89 DVAVRLPDKKSIIMYLTSLFEVLPQQVTI 117
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP:
a.7.1.1
Length = 107
Score = 44.4 bits (105), Expect = 6e-06
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 505 LFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKRE 564
L+ +S + E L++ ++E L+ +H+DF+ + E
Sbjct: 7 LYMRDCELAESWMSAREAFLNAD---DDANAGGNVEALIKKHEDFDK-------AINGHE 56
Query: 565 IQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLA 606
+ +A+Q + LI Q+H A+ ++ + +W L +
Sbjct: 57 QKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGL 98
Score = 27.1 bits (60), Expect = 7.8
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQE 400
R + A W+ + A + D + V+A I H+ I ++
Sbjct: 9 MRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQ 57
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 43.5 bits (103), Expect = 2e-05
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 62 VDTHEIDEKSIITYISSLYDVFPEPPA 88
V D+ +++TY+ + F P+
Sbjct: 91 VLLAIPDKLTVMTYLYQIRAHFSSGPS 117
>1bkr_A Spectrin beta chain; filamentous actin-binding domain,
cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB:
1aa2_A
Length = 109
Score = 43.0 bits (102), Expect = 2e-05
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPE 85
D+ DEKSIITY+ + Y F +
Sbjct: 84 DISVDHPDEKSIITYVVTYYHYFSK 108
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 44.6 bits (105), Expect = 4e-05
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPEPPAVHPL 92
DVD + DEKSIITY+SSLYD P P
Sbjct: 214 DVDVPQPDEKSIITYVSSLYDAMPRVPGAQEF 245
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain,
actin binding, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 41.6 bits (98), Expect = 1e-04
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 62 VDTHEIDEKSIITYISSLYDVFPEPPAV 89
V E D K + TYI Y + V
Sbjct: 90 VRLREPDWKCVYTYIQEFYRCLVQKGLV 117
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 43.6 bits (102), Expect = 1e-04
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPEPP 87
DVD + DEKSIITY+SSLYD P P
Sbjct: 270 DVDVPQPDEKSIITYVSSLYDAMPRVP 296
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Length = 121
Score = 41.1 bits (97), Expect = 1e-04
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 62 VDTHEIDEKSIITYISSLYDVFPEPP 87
E D+ S++ Y++ Y++F +
Sbjct: 92 ASVGEPDKLSMVMYLTQFYEMFKDSG 117
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
CH domain, mical, structural genomics; NMR {Homo
sapiens} PDB: 2dk9_A
Length = 116
Score = 40.3 bits (95), Expect = 2e-04
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 68 DEKSIITYISSLYDVFPEPPA 88
D +I Y+S + F P+
Sbjct: 94 DPLGLIAYLSHFHSAFKSGPS 114
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 41.1 bits (96), Expect = 5e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPEPPAV 89
DVDT D+KSI+ YI+SL+ V P+ ++
Sbjct: 217 DVDTTYPDKKSILMYITSLFQVLPQQVSI 245
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 40.9 bits (96), Expect = 0.001
Identities = 26/196 (13%), Positives = 71/196 (36%), Gaps = 9/196 (4%)
Query: 186 VIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEAR 245
++ + R++A + K L+ E + ++R ++L + ++ ++ +++E
Sbjct: 892 YLQCCYRRMMAKRELKK--LKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949
Query: 246 RLDRLHPL--DAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQ 303
+++ L + LR +EE + V +L+E + + L K + +
Sbjct: 950 KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE----EIAKLRKELHQTQT 1005
Query: 304 RWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVK 363
+ + + + E+ T+ + + + R+ D E +
Sbjct: 1006 EKKTIEE-WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064
Query: 364 NKLAQIQEADYGSDLQ 379
K ++ D Q
Sbjct: 1065 TKQLELDLNDERLRYQ 1080
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo
sapiens}
Length = 129
Score = 36.9 bits (85), Expect = 0.004
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 103 EYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHI 162
EY A+ + WM +QD T+ E++ L + +F+ +P R+++ + I
Sbjct: 16 EYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFK-STLPDADREREAILAI 74
Query: 163 FQDLTKYFEDVGEVDIDP----ELHIDVIERNWSRLLAAHQEKDSILQDEIKR 211
++ + E + +I W ++ ++D L +E +
Sbjct: 75 HKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALLEEQSK 127
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG
BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1
PDB: 1mql_B* 1mqn_B* 2l4g_A
Length = 221
Score = 37.7 bits (87), Expect = 0.006
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 195 LAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLD 254
AA + D+I R +L R+ EK + +++ E+E RI + + ++
Sbjct: 34 QAADLKSTQAAIDQINR--KLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDL 91
Query: 255 AKHNVDVL-----EHDLRQAEENINTLFSDVQ-TLRE 285
+N ++L +H + A+ +N LF + LRE
Sbjct: 92 WSYNAELLVALENQHTIDLADSEMNKLFEKTRRQLRE 128
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 38.0 bits (88), Expect = 0.006
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 62 VDTHEIDEKSIITYISSLYDVFPEPPAV 89
V+T + DEK+I+TY+S Y F
Sbjct: 223 VNTPKPDEKAIMTYVSCFYHAFAGAEQA 250
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 37.5 bits (86), Expect = 0.012
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 214 RLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENI 273
R++ L ++V ++ R+ +L + + + L K+ V+++ D +A N
Sbjct: 53 RMKGLIDEVDQDFTS---RINKLRDSLFNYQKNSKDSNTL-TKNIVELMRGDFAKANNN- 107
Query: 274 NTLFSDVQTLREGRYPQ-ASDLHKRVQKLHQR 304
+ + Q DL R++ L ++
Sbjct: 108 -----------DNTFKQINEDLRSRIEILRRK 128
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein,
glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A
{Influenza a virus} PDB: 2wrh_I*
Length = 222
Score = 34.6 bits (79), Expect = 0.070
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 195 LAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLD 254
AA Q+ D I +++ + EK+ + V LE RI +++D
Sbjct: 34 YAADQKSTQNAIDGIT--NKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDI 91
Query: 255 AKHNVDVL-----EHDLRQAEENINTLFSDVQ-TLRE 285
+N ++L E L + N+ L+ V+ L+
Sbjct: 92 WTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLKN 128
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 34.9 bits (81), Expect = 0.077
Identities = 9/104 (8%), Positives = 23/104 (22%), Gaps = 17/104 (16%)
Query: 170 FED-------VGEVD-------IDPELH---IDVIERNWSRLLAAHQEKDSILQDEIKRL 212
D ++ E+ ++ + W + + + L+ I
Sbjct: 112 TGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEH 171
Query: 213 DRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAK 256
+ E E E+ ++ K
Sbjct: 172 LSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNK 215
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 33.8 bits (77), Expect = 0.12
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 61 DVDTHEIDEKSIITYISSLYDV 82
++ ++DE S++TY+S
Sbjct: 222 EIIHPDVDEHSVMTYLSQFPKA 243
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor
specificity, envelope Pro fusion protein, membrane,
transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL
NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB:
2rfu_B* 3bt6_B*
Length = 176
Score = 33.1 bits (75), Expect = 0.17
Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 196 AAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA 255
AA + ++I L L+E + ++R+ G ++EL + I E ++D L
Sbjct: 35 AADLKSTQEAINKIT--KNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRADTI 92
Query: 256 KHNVDVL-----EHDLRQAEENINTLFSDVQ 281
+++ E + +E++ L ++
Sbjct: 93 SSQIELAVLLSNEGIINSEDEHLLALERKLK 123
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 33.9 bits (77), Expect = 0.20
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 196 AAHQEKDSILQDEIKRLDRLQRLAEKV-TREMKRVDGRLEELESRINEEARRLD 248
AA E D L E+ RL+ L+ + + E+ ++ +++ +++ RLD
Sbjct: 905 AARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLD 958
Score = 29.3 bits (65), Expect = 4.4
Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 10/145 (6%)
Query: 142 ARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRL--LAAHQ 199
+ E P+Q Q + + + D ++ ++ + R + + +
Sbjct: 818 LIYVVEAQAPKQL--QLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSK 875
Query: 200 EKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNV 259
+++ QD L + EK +D E + +++ E RL+ L N
Sbjct: 876 LVNAVQQDVHAILQLGEAQIEK--SARALIDAARNEADEKLSAELSRLEAL----RAVNP 929
Query: 260 DVLEHDLRQAEENINTLFSDVQTLR 284
++ + +L E N + +
Sbjct: 930 NIRDDELTAIESNRQQVMESLDQAG 954
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST
cell membrane, HOST membrane, membrane, transmembrane,
viral protein; HET: NAG; 2.60A {Influenza a virus} PDB:
3m5h_B* 3m5i_B* 3m5j_B*
Length = 182
Score = 32.7 bits (74), Expect = 0.23
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 196 AAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA 255
AA + D+I +L RL K ++ + +D E+E +I
Sbjct: 35 AADYKSTQSAIDQIT--GKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINWTRDAMTEIW 92
Query: 256 KHNVDVL-----EHDLRQAEENINTLFSDVQ 281
+N ++L +H + A+ ++ L+ V+
Sbjct: 93 SYNAELLVAMENQHTIDLADSEMSKLYERVK 123
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Length = 176
Score = 32.3 bits (73), Expect = 0.24
Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 196 AAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA 255
AA + D+I ++ + +K+ ++ +D E+E+R+N ++D
Sbjct: 35 AADSDSTQKAIDKIT--SKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDDQIQDIW 92
Query: 256 KHNVDVL-----EHDLRQAEENINTLFSDVQ 281
+N ++L + L + + N+N L++ V+
Sbjct: 93 TYNAELLVLLENQKTLDEHDANVNNLYNKVK 123
>2viu_B Hemagglutinin; envelope protein, glycoprotein; HET: NAG BMA; 2.50A
{Unidentified influenza virus} SCOP: h.3.1.1 PDB:
1eo8_B* 1hgd_B* 1hgf_B* 1hgg_B* 1hgh_B* 1hgi_B* 1hgj_B*
1ken_B* 1qfu_B* 2hmg_B* 1hge_B* 3hmg_B* 3ztj_B* 4hmg_B*
5hmg_B* 3sdy_B* 3eym_B* 3eyk_B* 3eyj_B* 1ti8_B* ...
Length = 175
Score = 32.3 bits (73), Expect = 0.26
Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 196 AAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA 255
AA + D+I +L R+ EK + +++ E+E RI + + ++
Sbjct: 35 AADLKSTQAAIDQIN--GKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLW 92
Query: 256 KHNVDVL-----EHDLRQAEENINTLFSDVQ 281
+N ++L +H + + +N LF +
Sbjct: 93 SYNAELLVALENQHTIDLTDSEMNKLFEKTR 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.27
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 155 DKQRLQHIFQDLTKYFEDVGEVDIDPELHIDV-IE 188
+KQ L+ + L Y +D P L I +E
Sbjct: 18 EKQALKKLQASLKLYADDSA-----PALAIKATME 47
Score = 28.0 bits (61), Expect = 5.4
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 117 EKTAYMQDRNFPSTLIEMKKLAADSA 142
EK A + ++L K A DSA
Sbjct: 18 EKQAL---KKLQASL---KLYADDSA 37
Score = 28.0 bits (61), Expect = 5.5
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 14/35 (40%)
Query: 200 EKDSILQDEIKRLD-RLQR--------LAEKVTRE 225
EK ++ K+L L+ LA K T E
Sbjct: 18 EKQAL-----KKLQASLKLYADDSAPALAIKATME 47
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 33.2 bits (75), Expect = 0.31
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 63 DTHEIDEKSIITYISSLYDV 82
D + + ++ +I SL V
Sbjct: 494 DIVAVRPRLVLHFIGSLMAV 513
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 32.7 bits (74), Expect = 0.33
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 214 RLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVL-----EHDLRQ 268
++ + EK+ + + V LE R+ ++++ +N ++L E L
Sbjct: 391 KVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDF 450
Query: 269 AEENINTLFSDVQ-TLRE 285
+ N+ L+ V+ LR+
Sbjct: 451 HDSNVKNLYDKVRMQLRD 468
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion
protein, protein, viral protein; HET: NAG; 1.60A
{Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B*
3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B*
2fk0_B* 3fku_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B*
3r2x_B* 3sm5_B* ...
Length = 174
Score = 32.0 bits (72), Expect = 0.37
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 196 AAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA 255
AA +E D I +++ + EK+ + + V LE R+ ++++
Sbjct: 35 AADKESTQKAFDGIT--NKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVW 92
Query: 256 KHNVDVL-----EHDLRQAEENINTLFSDVQ 281
+N ++L E L + N+ L+ V+
Sbjct: 93 TYNAELLVLMENERTLDFHDSNVKNLYDKVR 123
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 32.3 bits (73), Expect = 0.38
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 57 VKWNDVDTHEIDEKSIITYISSLY 80
+ ++ +D+ S++TY+S
Sbjct: 245 ITPEEIVDPNVDKHSVMTYLSQFP 268
>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
precursor, virus/viral protein protein; HET: NAG BMA
MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
Length = 494
Score = 32.3 bits (73), Expect = 0.50
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 214 RLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDA-KHNVDVL-----EHDLR 267
+L R+ EK + +++ E+E RI + + ++ +D +N ++L +H +
Sbjct: 372 KLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVED-TKIDLWSYNAELLVALENQHTID 430
Query: 268 QAEENINTLFSDVQ-TLRE 285
+ +N LF + LRE
Sbjct: 431 LTDSEMNKLFEKTRRQLRE 449
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active
site, N-glycosylation, C cation, chloride anion, zinc
IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo
sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A*
2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A*
2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A*
3d7f_A* ...
Length = 707
Score = 32.2 bits (72), Expect = 0.52
Identities = 14/117 (11%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 140 DSARFRTEEVPPRQRDKQRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQ 199
++ + P + + + + L D + + + + + ++ + + +
Sbjct: 514 ETFELVEKFYDPTFKKQLSVAQLRGALVYELVDSKIIPFNIQDYAEALKNYAASIYNLSK 573
Query: 200 EKDSILQDEIKRLDRL-------QRLAEKVTREMKRVDGRLEELESRINEEARRLDR 249
+ D L D D L A + + +VD +N++ L+R
Sbjct: 574 KHDQQLTDHGVSFDSLFSAVKNFSEAASDFHKRLIQVDLNNPIAVRMMNDQLMLLER 630
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex,
MERR-family transcription activator, MU binding protein;
HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3
d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A*
3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A*
3d6y_A* 1bow_A 2bow_A*
Length = 278
Score = 31.3 bits (71), Expect = 0.77
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 185 DVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEA 244
+ L A + E++ +++++ L L++ V + MKR E + +E
Sbjct: 71 KAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQMEYPALGEVFVLDEE 130
Query: 245 RR 246
Sbjct: 131 EI 132
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 31.4 bits (71), Expect = 1.1
Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 37/203 (18%)
Query: 220 EKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSD 279
EK+ M R+D + EL S+++ + A + L E + ++
Sbjct: 563 EKLLDTMNRLDDKYRELRSQLS---------NKSLAPEVHQQISKQLADRERELLPIYGQ 613
Query: 280 VQTLREGRYPQASDLHKRVQKLHQR--------WVALRSLLHSRLVSPLASMSFP---VV 328
+ Q +DLH R ++ + W R RL L
Sbjct: 614 ISL-------QFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSH 666
Query: 329 EERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIH 388
+ +R + + ++ W++ L+G++ E
Sbjct: 667 QVGEASRLEKIARIRSWYPASVDHEDDRQVATWIEE-----NYKTLDDKLKGLKLESFAQ 721
Query: 389 QREQNIIAQIQEADYGSDLQGVQ 411
+A+ +D+ + + G+
Sbjct: 722 D-----LAKKIRSDHDNAIDGLS 739
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 30.4 bits (69), Expect = 1.1
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 455 NEDADKLLEEGDPSDPQLRRLRREMDEVN--------RLFDEFE-RRARAEEDMKNATKL 505
+ + E+ DP D ++ L ++ E R+ E E R R E D++ A K
Sbjct: 27 AVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKF 86
Query: 506 FTEK-ASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKRE 564
EK + L +D +R L + + +V +D E TLK+++ + K
Sbjct: 87 ALEKFINELLPVIDSLDRALEV-----ADKANPDMSAMV---EDIELTLKSMLDVVRKFG 138
Query: 565 IQ 566
++
Sbjct: 139 VE 140
>1qu1_A Protein (influenza recombinant HA2 chain); hemagglutinin, low-PH,
virus/viral protein; 1.90A {Influenza a virus} SCOP:
h.3.1.1 PDB: 1htm_B
Length = 155
Score = 30.0 bits (67), Expect = 1.2
Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 214 RLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVL-----EHDLRQ 268
+L R+ EK + +++ E+E RI + + ++ +N ++L +H +
Sbjct: 21 KLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDL 80
Query: 269 AEENINTLFSDVQ 281
+ +N LF +
Sbjct: 81 TDSEMNKLFEKTR 93
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase,
conformational change, peptide binding, ATP-binding,
cell inner membrane; HET: ADP; 3.10A {Thermotoga
maritima} PDB: 3din_A*
Length = 822
Score = 31.1 bits (71), Expect = 1.4
Identities = 7/55 (12%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 465 GDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDE 519
D + L++ + + ++N++ + ++ ++ + + EK ++ + DE
Sbjct: 4 FDKNKRILKKYAKMVSKINQIESDLR--SKKNSELIRLSMVLKEKVNSFED-ADE 55
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 30.8 bits (69), Expect = 1.5
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 63 DTHEIDEKSIITYISSLY 80
D E+++K I+ +S+
Sbjct: 483 DIVEVNQKMILILTASIM 500
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering,
endoplasmic reticulum, ER-golgi transport, membrane,
phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Length = 706
Score = 31.0 bits (69), Expect = 1.6
Identities = 27/198 (13%), Positives = 65/198 (32%), Gaps = 8/198 (4%)
Query: 177 DIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEEL 236
ID L+I+ + K L+ + D L+E + +++ V +E L
Sbjct: 8 GIDDLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGASVEGL 67
Query: 237 ESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLRE-GRYPQASDLH 295
E + L + ++ + Q + ++ L S + L E P
Sbjct: 68 EQLRAKYGD-------LQILNKLEKVAVQQTQMQAGVDKLDSFERQLDELAEQPPDQFTL 120
Query: 296 KRVQKLHQRWVALRSLLHSRLVSPLASMSFPVVEERTVTRQTRTVMETRLVDTNTHFRAL 355
V+ LH + ++ + + ++ ++ + + +++ + + F
Sbjct: 121 DDVKALHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTGKYNDVIIQRLATNWSNTFDQK 180
Query: 356 QEAIEWVKNKLAQIQEAD 373
+W K A
Sbjct: 181 LLEAQWDTQKFASTSVGL 198
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 30.3 bits (68), Expect = 1.6
Identities = 5/25 (20%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 57 VKWNDVDTHEIDEKSIITYISSLYD 81
V DV + + K + ++++L++
Sbjct: 253 VTPADVVSG--NPKLNLAFVANLFN 275
>1ub4_A MAZF protein; toxin, antidote, programmed cell death,
post-segregation, AD module, structural genomics, PSI;
1.70A {Escherichia coli} SCOP: b.34.6.2 PDB: 3nfc_A
Length = 110
Score = 28.9 bits (65), Expect = 1.6
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 193 RLLAAHQEKDS-ILQDEIKRLDRLQRLAEKVTR----EMKRVDGRLEEL 236
++ + QE+D L D++K + R A K E++ + ++ L
Sbjct: 60 EVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVL 108
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 30.6 bits (70), Expect = 1.8
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 465 GDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASN---LQSKLDEA 520
G +D LRR+R+ ++ +N + E E ++E++K T F + L++ + EA
Sbjct: 3 GSRNDRTLRRMRKVVNIINAMEPEME--KLSDEELKGKTAEFRARLEKGEVLENLIPEA 59
>1m1f_A KID toxin protein; toxin-antitoxin, plasmid maintenance, post
segregational killing, DNA replication, mutational
analysis, CCDB; 1.40A {Escherichia coli} SCOP: b.34.6.2
PDB: 2c06_A
Length = 110
Score = 28.6 bits (64), Expect = 2.5
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 200 EKDS-ILQDEIKRLDRLQRLAEKVTR----EMKRVDGRLEEL 236
+ D+ + +D R +++ R M V GRL +
Sbjct: 67 RTTGVVRCDQPRTIDMKARGGKRLERVPETIMNEVLGRLSTI 108
>3f6y_A ADP-ribosyl cyclase 1; calcium loaded structure, active site
closure, inhibitory conformation, alternative splicing,
diabetes mellitus; 1.45A {Homo sapiens} PDB: 2o3s_A*
3dzh_A* 2i67_A* 2pgj_A* 3dzf_A* 2i66_A* 3dzg_A* 3dzi_A*
3dzk_A* 3i9m_A* 3i9n_A* 2o3t_A* 2o3q_A* 2i65_A* 2o3u_A*
2pgl_A* 2o3r_A* 2hct_A* 3dzj_A* 3raj_A ...
Length = 262
Score = 29.6 bits (66), Expect = 2.5
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 550 ESTLKNLMSDLEKREIQFSAVQDRGEALILQ--HHPAAK 586
+ T+K L S + KR IQFS LQ +P
Sbjct: 218 DPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDS 256
>1r12_A ADP-ribosyl cyclase; X-RAY crystallography, cyclic ADP- ribose,
naadp, Ca2+ signalling, hydrolase; 1.70A {Aplysia
californica} SCOP: c.23.14.3 PDB: 1lbe_A 1r15_A 1r16_A
3i9j_A* 3i9o_A* 3zwn_A* 3zwm_A* 3zwp_A* 3zwv_A* 3zww_A*
3zwo_A* 1r0s_A 3i9l_A* 3i9k_A*
Length = 258
Score = 29.6 bits (66), Expect = 2.7
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 550 ESTLKNLMSDLEKREIQFSAVQDRGEALILQ--HHPAAK 586
+L +L ++ + F V++ L L +P A+
Sbjct: 208 AGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNAR 246
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 30.3 bits (68), Expect = 2.9
Identities = 19/176 (10%), Positives = 62/176 (35%), Gaps = 13/176 (7%)
Query: 353 RALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQA 412
L+E + L ++++ + ++ +Q +A RE ++ + L+ +
Sbjct: 1913 DQLEEEQLHLNIGLKKLRDT--EAQVKDLQVSLAQKNRELDVKNEQANQK----LKQMVQ 1966
Query: 413 EIAIHQREQNIIEQFHTRVE----HCIAAKFLAMGAAQRNAIRKALNEDADKLLEEGDPS 468
+ + +Q + +++ K A ++ L E+ ++L +
Sbjct: 1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANEL 2026
Query: 469 DPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTL 524
+ + + + + ++ K ++S +++K+D + L
Sbjct: 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIK---TESSKVKNKVDRSIALL 2079
>1isi_A Bone marrow stromal cell antigen 1; ADP ribosyl cyclase, NAD
glycohydrolase, CNS, ethenonad, HYD; HET: NAG ENQ; 2.10A
{Homo sapiens} SCOP: c.23.14.3 PDB: 1isg_A* 1isf_A*
1ish_A* 1isj_A* 1ism_A*
Length = 265
Score = 29.6 bits (66), Expect = 3.1
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 550 ESTLKNLMSDLEKREIQFSAVQDRGEALILQ--HHPAAK 586
E ++K L L+ Q+S + D +LQ H
Sbjct: 208 EGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVDHSTHP 246
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 29.3 bits (65), Expect = 3.6
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 205 LQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEH 264
+ K +D L+ L + +++ + E I K V E
Sbjct: 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKL-----ALKLQVSKNEQ 67
Query: 265 DLRQAEENINTLFSDVQTLREGR 287
L+ I ++ + ++ R
Sbjct: 68 TLQDTNAKIASIQKKMSEIKSER 90
>3gv2_A Ca, fusion protein consisting of capsid protein P24, linker and
carbon dioxide-concentrating...; hexameric retroviral
capsid; 7.00A {Human immunodeficiency virus type 1}
Length = 342
Score = 29.5 bits (66), Expect = 3.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 236 LESRINEEARRLDRLHPLDA 255
L+ INEEA DRLHP+ A
Sbjct: 69 LKETINEEAAEWDRLHPVHA 88
>3h47_A Ca, capsid protein P24; hexamer, engineered disulfide bonds, viral
protein; 1.90A {Human immunodeficiency virus type 1}
PDB: 3h4e_A 2lf4_A 3mge_A 3p05_A 3p0a_A 3dik_A 3nte_A
1e6j_P
Length = 231
Score = 29.0 bits (65), Expect = 4.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 236 LESRINEEARRLDRLHPLDA 255
L+ INEEA DRLHP+ A
Sbjct: 69 LKETINEEAAEWDRLHPVHA 88
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR
{Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Length = 289
Score = 28.9 bits (65), Expect = 4.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 236 LESRINEEARRLDRLHPLDA 255
L+ INEEA DRLHP+ A
Sbjct: 201 LKETINEEAAEWDRLHPVHA 220
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 5.6
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 209 IKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQ 268
I + DRL + E + + + RL+EL++ K + + Q
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDA---ASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 269 AEENI-NTLFSDVQTLRE 285
E+N N +D ++
Sbjct: 131 VEKNKINNRIADKAFYQQ 148
>1eia_A EIAV capsid protein P26; viral capsid, HIV, lentivirus, viral
protein; 2.70A {Equine infectious anemia virus} SCOP:
a.28.3.1 a.73.1.1 PDB: 2eia_A
Length = 207
Score = 28.3 bits (63), Expect = 5.7
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 231 GRLEELESRINEEARRLDRLHPLDA 255
G+ + L I++ A D HPL
Sbjct: 50 GQKQILLDAIDKIADDWDNRHPLPN 74
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase,
translocation, secretion, protein transport; 2.18A
{Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19
c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A
3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Length = 844
Score = 28.7 bits (65), Expect = 6.3
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 466 DPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASN---LQSKLDEA 520
DP+ L R + ++++ + ++E +++ +K+ T F E+ L EA
Sbjct: 13 DPTKRTLNRYEKIANDIDAIRGDYE--NLSDDALKHKTIEFKERLEKGATTDDLLVEA 68
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric
autotransporter adhesin, TAA; 2.80A {Enterobacteria
phage p-eibd}
Length = 114
Score = 27.2 bits (59), Expect = 6.5
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 157 QRLQHIFQDLTKYFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQ 216
++ HI ++ + + +G +D + IE+N A LQ RLD Q
Sbjct: 13 SKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKN----SKAIAANTRTLQQHSARLDSQQ 68
Query: 217 RLAEKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHN 258
R + +EMK+++ ++EE+ S+I + R+ L H+
Sbjct: 69 RQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIKLHH 110
>2xde_A GAG polyprotein, HIV-1 capsid; AIDS, viral protein; HET: 1B0; 1.40A
{Human immunodeficiency virus 1} PDB: 1m9y_C 2x2d_D*
1m9x_C 1m9e_C 1m9f_C 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C
2x83_A 4e91_A* 4e92_A* 2pwo_A 2pwm_A 2gon_A 1ak4_C
2jpr_A* 1m9d_C 4dga_C ...
Length = 145
Score = 27.5 bits (61), Expect = 7.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 236 LESRINEEARRLDRLHPL 253
L+ INEEA DRLHP+
Sbjct: 70 LKETINEEAAEWDRLHPV 87
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase,
glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Length = 278
Score = 28.5 bits (63), Expect = 7.3
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 550 ESTLKNLMSDLEKREIQFSAVQDRGEALILQ 580
S+++ L S L+ R ++F + + LQ
Sbjct: 246 GSSIRKLKSILDGRNVKFRCMDNLSRDQFLQ 276
>1q06_A Transcriptional regulator CUER; MERR family transcriptional
regulator, copper efflux regulator; 2.07A {Escherichia
coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Length = 135
Score = 27.3 bits (61), Expect = 7.6
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 207 DEIKRLDRLQRLAEKVTREMKR-VDGRLEELESRINEEARRLDRLHPL 253
+E L L ++ + ++KR ++ E+E I E D+L L
Sbjct: 61 EESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLAL 108
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation,
ATPase, transmembrane transport, helicase-like motor
domain; HET: ADP; 2.60A {Mycobacterium tuberculosis}
SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB:
1nl3_A
Length = 922
Score = 28.8 bits (65), Expect = 8.0
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 458 ADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQS-- 515
KLL ++RL++ D V L D+ E + +++ T F + ++ ++
Sbjct: 32 LSKLL--RLGEGRMVKRLKKVADYVGTLSDDVE--KLTDAELRAKTDEFKRRLADQKNPE 87
Query: 516 KLDE 519
LD+
Sbjct: 88 TLDD 91
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 27.5 bits (60), Expect = 8.1
Identities = 16/102 (15%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 187 IERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEEARR 246
++ +++ L ++D ++ + + + L K E +++ +E+L + + +EA
Sbjct: 42 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN 101
Query: 247 L---DRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLRE 285
+ R + L LR+ + ++TL ++ L++
Sbjct: 102 MVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid
protein, viral nucleoprotein, AIDS; 1.25A {Human
immunodeficiency virus type 2} PDB: 2x82_A
Length = 144
Score = 27.5 bits (61), Expect = 8.3
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 236 LESRINEEARRLDRLHP 252
+ INEEA D HP
Sbjct: 68 IREIINEEAAEWDVQHP 84
>2xgu_A Relik capsid N-terminal domain; viral protein, retroviral capsid;
1.50A {Oryctolagus cuniculus} PDB: 2xgy_A
Length = 149
Score = 27.2 bits (60), Expect = 9.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 236 LESRINEEARRLDRLHP 252
+ +I E+A D +HP
Sbjct: 69 VIDKIKEKAIAWDEMHP 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 28.2 bits (63), Expect = 9.4
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 458 ADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASN---LQ 514
+L + R ++ ++ VNRL E E D+ A + EK L
Sbjct: 5 LRRLF--DNNEREIARYYKQVVEPVNRLEAEVE----KLPDLAAAYRELKEKHEKGASLD 58
Query: 515 SKLDEA 520
L A
Sbjct: 59 ELLPMA 64
>3gc6_A ECTO-NAD+ glycohydrolase (CD38 molecule); cyclic ADP ribose,
ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG;
1.51A {Bos taurus} PDB: 3ghh_A* 3kou_A* 3gh3_A*
Length = 247
Score = 27.7 bits (61), Expect = 10.0
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 550 ESTLKNLMSDLEKREIQFSAVQDRGEALILQ 580
S+++ L S L+ R ++F + + LQ
Sbjct: 215 GSSIRKLKSILDGRNVKFRCMDNLSRDQFLQ 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.378
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,855,479
Number of extensions: 616926
Number of successful extensions: 2454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2286
Number of HSP's successfully gapped: 267
Length of query: 635
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 536
Effective length of database: 3,937,614
Effective search space: 2110561104
Effective search space used: 2110561104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)