RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6471
(635 letters)
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 96.8 bits (241), Expect = 2e-24
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 96 ESQQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRD 155
E+++ + EY LAS L W+R ++++R T+ M+K D +R + PP+ ++
Sbjct: 7 ENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQE 66
Query: 156 KQRLQHIFQDLTKYFEDVGEVDIDP--ELHIDVIERNWSRLLAAHQEKDSILQDEIKRL 212
K +L+ F L P + I W RL A + + L +EI+RL
Sbjct: 67 KCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRL 125
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 49.2 bits (117), Expect = 5e-08
Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F ++ ++E + S L +++ L+ +H+ FE+ D +
Sbjct: 2 FVANVEEEEAWINEKMTLVASE---DYGDTLAAIQGLLKKHEAFET-------DFTVHKD 51
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAA 617
+ + V GE LI +++ + I A M ++ + + L + A + L +
Sbjct: 52 RVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 103
Score = 32.6 bits (74), Expect = 0.026
Identities = 12/75 (16%), Positives = 26/75 (34%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGVQ 411
++E W+ K+ + DYG L +Q + H+ + ++ G
Sbjct: 3 VANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGED 62
Query: 412 AEIAIHQREQNIIEQ 426
+ +NI +
Sbjct: 63 LIKKNNHHVENITAK 77
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 49.6 bits (118), Expect = 6e-08
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 207 DEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINEE---ARRLDRLHPLDAKHNVDVLE 263
+EI+RL+RL+ LAEK ++ + E + ++ + L + L KH + E
Sbjct: 4 NEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKH--EAFE 61
Query: 264 HDLRQAEENINTLFSDVQTLREGRYPQASDLHKRVQKLHQRWVALRSLLHSR 315
DL ++ + + + Q L E Y A +++ R QK+ +W L +L R
Sbjct: 62 SDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKR 113
Score = 48.4 bits (115), Expect = 2e-07
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 13/120 (10%)
Query: 487 DEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQH 546
+E R R E + F +KAS ++ E+ L + L + L+ +H
Sbjct: 4 NEIRRLERLEH----LAEKFRQKASTHETWAYGKEQILLQK--DYESASLTEVRALLRKH 57
Query: 547 KDFESTLKNLMSDLEKREIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLA 606
+ FE SDL + + + + L + A + + QW L L
Sbjct: 58 EAFE-------SDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLT 110
Score = 27.2 bits (60), Expect = 3.3
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 352 FRALQEAIEWVKNKLAQIQEADY-GSDLQGVQAEIAIHQREQNIIAQIQEADYGSDLQGV 410
+ W K + + DY + L V+A + H+ ++ +A Q+
Sbjct: 20 RQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQ 79
Query: 411 QAEIAIHQREQNIIEQ 426
+ + N+ ++
Sbjct: 80 ELNELDYHDAVNVNDR 95
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 101
Score = 48.5 bits (115), Expect = 8e-08
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F + +S + E + + S RDL +++L +HK E+ +L E
Sbjct: 3 FFRDMDDEESWIKEKKLLVSSE---DYGRDLTGVQNLRKKHKRLEA-------ELAAHEP 52
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLA 606
V D G+ L + + I+ +A W L QLA
Sbjct: 53 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLA 93
Score = 31.5 bits (71), Expect = 0.071
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQE 400
FR + + W+K K + DYG DL GVQ H+R + +A +
Sbjct: 4 FRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 52
Score = 26.1 bits (57), Expect = 5.9
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 396 AQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCI--AAKFLAMGAAQRNAIRKA 453
+ DYG DL GVQ H+R + + ++ + K + I++
Sbjct: 19 LLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQR 78
Query: 454 LNE 456
L +
Sbjct: 79 LAQ 81
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 110
Score = 47.7 bits (113), Expect = 2e-07
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F + L E E L S +DL S+ +L+ +H+ E+ D+ E
Sbjct: 7 FNTGIKDFDFWLSEVEALLASE---DYGKDLASVNNLLKKHQLLEA-------DISAHED 56
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHA 616
+ + + ++L+ ++ + ++ + +A L +
Sbjct: 57 RLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNES 107
Score = 32.3 bits (73), Expect = 0.045
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQE 400
+++ W+ A + DYG DL V + HQ + I+ ++
Sbjct: 8 NTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHED 56
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
7242]}
Length = 107
Score = 46.1 bits (109), Expect = 7e-07
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 505 LFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKRE 564
L+ +S + E L++ ++E L+ +H+DF+ + E
Sbjct: 7 LYMRDCELAESWMSAREAFLNAD---DDANAGGNVEALIKKHEDFDK-------AINGHE 56
Query: 565 IQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLA 606
+ +A+Q + LI Q+H A+ ++ + +W L +
Sbjct: 57 QKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGL 98
Score = 30.3 bits (68), Expect = 0.20
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQREQNIIAQIQE 400
R + A W+ + A + D + V+A I H+ I ++
Sbjct: 9 MRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQ 57
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 44.8 bits (105), Expect = 3e-06
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 98 QQRVNEYCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQ 157
Q E+ A+ + WM +QD ++ E++ L +F+ +P ++Q
Sbjct: 4 DQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKAT-LPEADGERQ 62
Query: 158 RLQHIFQDLTK----YFEDVGEVDIDPELHIDVIERNWSRLLAAHQEKDSILQDEIKR 211
+ I ++ K Y + + + +D + W ++ +D LQ+E+ R
Sbjct: 63 SIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELAR 120
Score = 39.0 bits (90), Expect = 2e-04
Identities = 15/117 (12%), Positives = 46/117 (39%), Gaps = 3/117 (2%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F ++A+ + ++ A L + ++ ++ L+ H+ F++TL + +
Sbjct: 10 FAKRAAPFNNWMEGAMEDLQDM---FIVHSIEEIQSLITAHEQFKATLPEADGERQSIMA 66
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLALCLETHLKHAAYYHQF 622
+ V+ ++ ++ + M ++++W + QL + L+
Sbjct: 67 IQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 123
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 39.9 bits (93), Expect = 1e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 60 NDVDTHEIDEKSIITYISSLYDVFPEPPAV 89
DVDT D+KSI+ YI+SL+ V P+ ++
Sbjct: 97 EDVDTTYPDKKSILMYITSLFQVLPQQVSI 126
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 40.1 bits (93), Expect = 2e-04
Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 15/154 (9%)
Query: 453 ALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASN 512
+ K+LE + + + + E R + E+ F A +
Sbjct: 9 VVESSGPKVLETAEEIQERRQEVLTRYQSFKERVAE--RGQKLEDSYHLQV--FKRDADD 64
Query: 513 LQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREIQFSAVQD 572
L + E L D +++ +H+ E ++++ + S ++
Sbjct: 65 LGKWIMEKVNILTD----KSYEDPTNIQGKYQKHQSLE-------AEVQTKSRLMSELEK 113
Query: 573 RGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLA 606
E H A + +A++ ++ W LL+L
Sbjct: 114 TREERFTMGHSAHEETKAHIEELRHLWDLLLELT 147
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 38.4 bits (89), Expect = 3e-04
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFP 84
DVD + DEKSIITY+SSLYD P
Sbjct: 87 DVDVPQPDEKSIITYVSSLYDAMP 110
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 37.4 bits (86), Expect = 8e-04
Identities = 11/103 (10%), Positives = 30/103 (29%), Gaps = 11/103 (10%)
Query: 504 KLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKR 563
+ F +A+ + + + + +LE + Q K + ++
Sbjct: 8 RQFAAQANAIGPWIQNKMEEIAR----SSIQITGALEDQMNQLKQY-------EHNIINY 56
Query: 564 EIQFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLA 606
+ ++ + + K M ++ W LL
Sbjct: 57 KNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTI 99
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 36.6 bits (84), Expect = 0.001
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F + A ++ L E TL P L++ E + + +DF +++N +
Sbjct: 5 FQKDAKQAEAILSNQEYTLAH---LEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVD 61
Query: 566 QFSAVQDRGEALILQHHPAAKCIEAYMAAMQSQWAWLLQLA 606
G L+ + + + I+ + ++ + + A
Sbjct: 62 S-------GNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKA 95
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 35.3 bits (81), Expect = 0.003
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 61 DVDTHEIDEKSIITYISSLYDVFPE 85
D+ DEKSIITY+ + Y F +
Sbjct: 83 DISVDHPDEKSIITYVVTYYHYFSK 107
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 35.2 bits (81), Expect = 0.004
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 61 DVDTHEIDEKSIITYISSLYDV 82
DV D+KSII Y++SL++V
Sbjct: 86 DVAVRLPDKKSIIMYLTSLFEV 107
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 106
Score = 34.3 bits (78), Expect = 0.009
Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 506 FTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLEKREI 565
F + + Q+ L ++ + S +P L E L+ QH +++ +
Sbjct: 4 FLQDLDDFQAWLSITQKAVASE---DMPESLPEAEQLLQQHAGI-------KDEIDGHQD 53
Query: 566 QFSAVQDRGEALI-LQHHPAAKCIEAYMAAMQSQWAWLLQLA 606
+ V++ GE +I Q P + + + + W L ++
Sbjct: 54 SYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMW 95
Score = 30.1 bits (67), Expect = 0.22
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 8/85 (9%)
Query: 352 FRALQEAIEWVKNKLAQIQEADYGSDLQGVQAEIAIHQ--------REQNIIAQIQEADY 403
+ L + W+ + D L + + H + + + +
Sbjct: 5 LQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEK 64
Query: 404 GSDLQGVQAEIAIHQREQNIIEQFH 428
Q + + QR + + +
Sbjct: 65 VIQGQTDPEYLLLGQRLEGLDTGWD 89
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 34.2 bits (78), Expect = 0.048
Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 15/148 (10%)
Query: 63 DTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYCDLASSLHLWMREKTAYM 122
+ K + +++ L++ P ++ E + E A LW+
Sbjct: 234 AMVAGNPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREARVFTLWLNSLDVTP 293
Query: 123 QDRNFPS------TLIE-MKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTKYFE---- 171
+F + L++ K+ ++ ++ P D+ ++ +
Sbjct: 294 SIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKN 353
Query: 172 -DVGEVDIDPELHIDVIERNWSRLLAAH 198
V I D+ + + + LA
Sbjct: 354 QGFSLVGIQGA---DITDGSRTLTLALV 378
Score = 33.1 bits (75), Expect = 0.10
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 63 DTHEIDEKSIITYISSLYDV 82
D + + ++ +I SL V
Sbjct: 486 DIVAVRPRLVLHFIGSLMAV 505
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 30.3 bits (68), Expect = 0.79
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 63 DTHEIDEKSIITYISSLY 80
D E+++K I+ +S+
Sbjct: 477 DIVEVNQKMILILTASIM 494
>d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine
infectious anemia virus [TaxId: 11665]}
Length = 131
Score = 28.2 bits (63), Expect = 1.3
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 236 LESRINEEARRLDRLHPLDA 255
L I++ A D HPL
Sbjct: 54 LLDAIDKIADDWDNRHPLPN 73
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 29.2 bits (65), Expect = 1.5
Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 466 DPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASN 512
DP+ L R + ++++ + ++E +++ +K+ T F E+
Sbjct: 10 DPTKRTLNRYEKIANDIDAIRGDYE--NLSDDALKHKTIEFKERLEK 54
>d1r12a_ c.23.14.3 (A:) ADP ribosyl cyclase {California sea hare
(Aplysia californica) [TaxId: 6500]}
Length = 251
Score = 29.0 bits (65), Expect = 1.7
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 550 ESTLKNLMSDLEKREIQFSAVQDRGEALILQ--HHPAAK 586
+L +L ++ + F V++ L L +P A+
Sbjct: 208 AGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNAR 246
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 28.8 bits (64), Expect = 1.8
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 465 GDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASNLQSKLDEAERTL 524
++RL++ D V L D+ E + +++ T F + ++ ++ +
Sbjct: 23 RLGEGRMVKRLKKVADYVGTLSDDVE--KLTDAELRAKTDEFKRRLADQKNPETLDDLLP 80
Query: 525 HS 526
+
Sbjct: 81 EA 82
>d1isia_ c.23.14.3 (A:) Bone marror stromal cell antigen 1,
BST-1/CD157 (ADP ribosyl cyclase-2) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 250
Score = 28.2 bits (63), Expect = 2.7
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 550 ESTLKNLMSDLEKREIQFSAVQDRGEALILQ--HHPAAK 586
E ++K L L+ Q+S + D +LQ H
Sbjct: 207 EGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVDHSTHP 245
>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 27.7 bits (60), Expect = 2.9
Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 46 GDPNPSFSLTNVKWNDVDTHEIDE--KSIITYISSLYDVFPEPPAVHPLYDSESQQRVNE 103
GDP P SL N + + +I E + ++ ++ D+ + +
Sbjct: 8 GDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA 67
Query: 104 YCDLASSLHLWMREKTAYMQDRNFPSTLIEMKKLA 138
S+ + ++K Q+ + ++
Sbjct: 68 AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFI 102
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial
membrane TIMM44 (TIM44), C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 192
Score = 27.6 bits (61), Expect = 3.3
Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 11/123 (8%)
Query: 453 ALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKNATKLFTEKASN 512
++ +KL +E + +P + +R+ ++V F E E +R K F+ ++
Sbjct: 1 SIQSLKNKLWDESE--NPLIVVMRKITNKVGGFFAETE-SSRVYSQFKLMDPTFSNESF- 56
Query: 513 LQSKLDEAERTLHSRI-NAPVPRDLDSLEHLVL--QHKDFESTLKNLMSDLEKREIQFSA 569
+ I A V D+ L+ + + K + +
Sbjct: 57 ----TRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILD 112
Query: 570 VQD 572
++
Sbjct: 113 IRG 115
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 145
Score = 27.4 bits (61), Expect = 3.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 236 LESRINEEARRLDRLHPLDA 255
L+ INEEA DRLHP+ A
Sbjct: 69 LKETINEEAAEWDRLHPVHA 88
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 456
Score = 27.8 bits (60), Expect = 4.1
Identities = 39/316 (12%), Positives = 86/316 (27%), Gaps = 5/316 (1%)
Query: 264 HDLRQAEENINTLFSDVQTLREGRYPQ--ASDLHKRVQKLHQRWVALRSLLHSRLVSPLA 321
DLR A N+ + + R +P+ R + + S+ L
Sbjct: 61 RDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTLG 120
Query: 322 SMSFPVVEERTVTRQTRTVMETRLVDTNTHFRALQEAIEWVKNKLAQIQEADYGSDLQGV 381
+ ++ + + +E L A + V ++ L
Sbjct: 121 TTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTKD 180
Query: 382 QAEIAIHQREQNIIAQIQEADYGSDLQGVQAEIAIHQREQNIIEQFHTRVEHCIAAKFLA 441
+ + DL+ Q + + + + Q+ V A L
Sbjct: 181 TLGTYQKSFDLTQRSYDVGVASALDLRQAQTAV---EGARATLAQYTRLVAQDQNALVLL 237
Query: 442 MGAAQRNAIRKALNEDADKLLEEGDPSDPQLRRLRREMDEVNRLFDEFERRARAEEDMKN 501
+G+ + + L D L E L + R ++ E A
Sbjct: 238 LGSGIPANLPQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAAFF 297
Query: 502 ATKLFTEKASNLQSKLDEAERTLHSRINAPVPRDLDSLEHLVLQHKDFESTLKNLMSDLE 561
+ T A + +L +L L+ + ++ ++ +
Sbjct: 298 PSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQ 357
Query: 562 KREIQFSAVQDRGEAL 577
+ +A Q+ + L
Sbjct: 358 YEKAIQTAFQEVADGL 373
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 310
Score = 27.6 bits (61), Expect = 4.4
Identities = 11/64 (17%), Positives = 29/64 (45%)
Query: 220 EKVTREMKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSD 279
K+ + + ++ LEE + ++ + +R + VLE + + +E + + S+
Sbjct: 166 RKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSE 225
Query: 280 VQTL 283
+ L
Sbjct: 226 QKNL 229
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 153
Score = 27.0 bits (58), Expect = 4.5
Identities = 8/87 (9%), Positives = 17/87 (19%)
Query: 46 GDPNPSFSLTNVKWNDVDTHEIDEKSIITYISSLYDVFPEPPAVHPLYDSESQQRVNEYC 105
G P F+L + V + + + N+
Sbjct: 5 GATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDS 64
Query: 106 DLASSLHLWMREKTAYMQDRNFPSTLI 132
+ + F L+
Sbjct: 65 AALAISVGPPPTHKIWATQSGFTFPLL 91
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 60
Score = 25.5 bits (55), Expect = 4.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 213 DRLQRLAEKVTREMKRVDGRLEELESRINE 242
++L+R ++ E+ V RL E+E R E
Sbjct: 31 EKLRRYLKRTVTELDSVTARLREVEHRAGE 60
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 26.3 bits (58), Expect = 6.7
Identities = 11/59 (18%), Positives = 29/59 (49%)
Query: 184 IDVIERNWSRLLAAHQEKDSILQDEIKRLDRLQRLAEKVTREMKRVDGRLEELESRINE 242
I + R ++L+ + D +++++++D LQ+ +V E + E+L ++
Sbjct: 65 IILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 123
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 26.5 bits (58), Expect = 9.2
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 121 YMQDRNFPSTLIEMKKLAADSARFRTEEVPPRQRDKQRLQHIFQDLTK 168
Y+ DR+ P I++ A AR + + ++ + + +
Sbjct: 220 YINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 267
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 26.8 bits (58), Expect = 9.4
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 215 LQRLAEKVTREMKRVDGRLEELESRINEEARRLDRLHP--LDAKHNVDV 261
L++ E++ R ++ LE + ++ + LH +D + N+ V
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRV 49
>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 25.5 bits (56), Expect = 9.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 492 RARAEEDMKNATKLFTEKASNLQSKLDEAERTLH 525
R M ++ + E S L ++LDE ER L
Sbjct: 56 IGRFRRIMDSSQNAYNEDTSALVARLDEMERGLF 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.378
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,332,322
Number of extensions: 110641
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 105
Length of query: 635
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 544
Effective length of database: 1,158,166
Effective search space: 630042304
Effective search space used: 630042304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)