BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6472
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin
Length = 235
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 37 LEHDLRQAEENINTLFSDVQTLREGRYPQASDLH 70
+E DL +A+ I LF+DVQTL++GR+PQ ++
Sbjct: 170 VERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMY 203
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 37 LEHDLRQAEENINTLFSDVQTLREGRYPQASDLH 70
+E DL +A+ I LF+DVQTL++GR+PQ ++
Sbjct: 170 VERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMY 203
>pdb|3H47|A Chain A, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|A Chain A, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|B Chain B, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|C Chain C, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|D Chain D, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|E Chain E, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|F Chain F, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|G Chain G, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|H Chain H, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|I Chain I, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|J Chain J, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|K Chain K, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3H4E|L Chain L, X-Ray Structure Of Hexameric Hiv-1 Ca
Length = 231
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|2XDE|A Chain A, Crystal Structure Of The Complex Of Pf-3450074 With An
Engineered Hiv Capsid N Terminal Domain
pdb|2XDE|B Chain B, Crystal Structure Of The Complex Of Pf-3450074 With An
Engineered Hiv Capsid N Terminal Domain
Length = 145
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 8 LEELESRINEEARRLDRLHPLDAKHNVDV 36
++ L+ INEEA DRLHP+ D+
Sbjct: 67 MQMLKETINEEAAEWDRLHPVGEPRGSDI 95
>pdb|3P0A|A Chain A, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|B Chain B, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|C Chain C, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|D Chain D, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|E Chain E, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|F Chain F, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|G Chain G, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|H Chain H, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|I Chain I, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|J Chain J, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|K Chain K, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|L Chain L, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|M Chain M, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|N Chain N, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|O Chain O, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|P Chain P, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|Q Chain Q, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|R Chain R, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|S Chain S, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P0A|T Chain T, X-Ray Structure Of Pentameric Hiv-1 Ca
Length = 231
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|3GV2|A Chain A, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|B Chain B, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|C Chain C, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|D Chain D, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|E Chain E, X-Ray Structure Of Hexameric Hiv-1 Ca
pdb|3GV2|F Chain F, X-Ray Structure Of Hexameric Hiv-1 Ca
Length = 342
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|3P05|A Chain A, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|B Chain B, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|C Chain C, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|D Chain D, X-Ray Structure Of Pentameric Hiv-1 Ca
pdb|3P05|E Chain E, X-Ray Structure Of Pentameric Hiv-1 Ca
Length = 231
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|3MGE|A Chain A, X-Ray Structure Of Hexameric Hiv-1 Ca
Length = 231
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|1M9Y|C Chain C, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|D Chain D, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|G Chain G, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|H Chain H, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex
Length = 146
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVAA 88
>pdb|1M9E|C Chain C, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|D Chain D, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 146
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVAA 88
>pdb|2LF4|A Chain A, Structure Of A Monomeric Mutant Of The Hiv-1 Capsid
Protein
Length = 240
Score = 28.9 bits (63), Expect = 0.73, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 67 MQMLKETINEEAAEWDRLHPVHA 89
>pdb|3DIK|A Chain A, Pseudo-Atomic Model Of The Hiv-1 Ca Hexameric Lattice
Length = 219
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|2X2D|D Chain D, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|E Chain E, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 147
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 67 MQMLKETINEEAAEWDRLHPVHA 89
>pdb|1AK4|C Chain C, Human Cyclophilin A Bound To The Amino-Terminal Domain
Of Hiv-1 Capsid
pdb|1AK4|D Chain D, Human Cyclophilin A Bound To The Amino-Terminal Domain
Of Hiv-1 Capsid
Length = 145
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|1M9C|C Chain C, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|D Chain D, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|2GOL|B Chain B, Xray Structure Of Gag278
pdb|2GOL|D Chain D, Xray Structure Of Gag278
pdb|2PXR|C Chain C, Crystal Structure Of Hiv-1 Ca146 In The Presence Of
Cap-1
pdb|2X83|A Chain A, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|C Chain C, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|4E91|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hiv-1
Capsid In Complex With Inhibitor Bd3
pdb|4E91|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hiv-1
Capsid In Complex With Inhibitor Bd3
pdb|4E92|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hiv-1
Capsid In Complex With Inhibitor Bm4
pdb|4E92|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hiv-1
Capsid In Complex With Inhibitor Bm4
pdb|4B4N|A Chain A, Cpsf6 Defines A Conserved Capsid Interface That
Modulates Hiv-1 Replication
pdb|4INB|A Chain A, Crystal Structure Of The N-terminal Domain Of Hiv-1
Capsid In Complex With Benzodiazepine Inhibitor
Length = 146
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|1AFV|A Chain A, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
pdb|1AFV|B Chain B, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
pdb|1GWP|A Chain A, Structure Of The N-Terminal Domain Of The Mature Hiv-1
Capsid Protein
Length = 151
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|2PWM|A Chain A, Crystal Structure Of Hiv-1 Ca146 A92e Real Cell
pdb|2PWM|B Chain B, Crystal Structure Of Hiv-1 Ca146 A92e Real Cell
pdb|2PWM|C Chain C, Crystal Structure Of Hiv-1 Ca146 A92e Real Cell
pdb|2PWM|D Chain D, Crystal Structure Of Hiv-1 Ca146 A92e Real Cell
pdb|2PWM|E Chain E, Crystal Structure Of Hiv-1 Ca146 A92e Real Cell
pdb|2PWM|F Chain F, Crystal Structure Of Hiv-1 Ca146 A92e Real Cell
pdb|2PWM|G Chain G, Crystal Structure Of Hiv-1 Ca146 A92e Real Cell
pdb|2PWM|H Chain H, Crystal Structure Of Hiv-1 Ca146 A92e Real Cell
pdb|2PWO|A Chain A, Crystal Structure Of Hiv-1 Ca146 A92e Psuedo Cell
pdb|2PWO|B Chain B, Crystal Structure Of Hiv-1 Ca146 A92e Psuedo Cell
pdb|2PWO|C Chain C, Crystal Structure Of Hiv-1 Ca146 A92e Psuedo Cell
pdb|2PWO|D Chain D, Crystal Structure Of Hiv-1 Ca146 A92e Psuedo Cell
Length = 146
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|2JPR|A Chain A, Joint Refinement Of The Hiv-1 Ca-Ntd In Complex With The
Assembly Inhibitor Cap-1
Length = 145
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 66 MQMLKETINEEAAEWDRLHPVHA 88
>pdb|4ARG|A Chain A, Structure Of The Immature Retroviral Capsid At 8a
Resolution By Cryo-Electron Microscopy
pdb|4ARG|C Chain C, Structure Of The Immature Retroviral Capsid At 8a
Resolution By Cryo-Electron Microscopy
Length = 129
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 50 MQMLKETINEEAAEWDRLHPVHA 72
>pdb|1L6N|A Chain A, Structure Of The N-Terminal 283-Residue Fragment Of The
Hiv- 1 Gag Polyprotein
Length = 289
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DRLHP+ A
Sbjct: 198 MQMLKETINEEAAEWDRLHPVHA 220
>pdb|2GON|A Chain A, Xray Structure Of Gag133-278
pdb|2GON|B Chain B, Xray Structure Of Gag133-278
pdb|2GON|C Chain C, Xray Structure Of Gag133-278
pdb|2GON|D Chain D, Xray Structure Of Gag133-278
Length = 146
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 9 EELESRINEEARRLDRLHPLDA 30
+ L+ INEEA DRLHP+ A
Sbjct: 67 QXLKETINEEAAEWDRLHPVHA 88
>pdb|3NTE|A Chain A, Crystal Structure Of The Wild-Type Full-Length Hiv-1
Capsid Protein
pdb|3NTE|B Chain B, Crystal Structure Of The Wild-Type Full-Length Hiv-1
Capsid Protein
Length = 221
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DR+HP+ A
Sbjct: 66 MQMLKETINEEAAEWDRVHPVHA 88
>pdb|1PYF|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Apo)
pdb|1PZ0|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Holo)
Length = 312
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 14 RINEEARRLDRLHPLDAKHNVDV 36
R E R++++L P+ KHNVD+
Sbjct: 237 RFKENIRKVNKLAPIAEKHNVDI 259
>pdb|1M9F|C Chain C, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|D Chain D, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex
Length = 146
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 8 LEELESRINEEARRLDRLHPL 28
++ L+ INEEA DRLHP+
Sbjct: 66 MQMLKETINEEAAEWDRLHPV 86
>pdb|1M9X|C Chain C, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|D Chain D, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|G Chain G, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|H Chain H, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex
Length = 146
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 8 LEELESRINEEARRLDRLHPL 28
++ L+ INEEA DRLHP+
Sbjct: 66 MQMLKETINEEAAEWDRLHPV 86
>pdb|1E6J|P Chain P, Crystal Structure Of Hiv-1 Capsid Protein (P24) In
Complex With Fab13b5
Length = 210
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 8 LEELESRINEEARRLDRLHPLDA 30
++ L+ INEEA DR+HP+ A
Sbjct: 56 MQMLKETINEEAAEWDRVHPVHA 78
>pdb|1AA0|A Chain A, Fibritin Deletion Mutant E (Bacteriophage T4)
Length = 113
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 33 NVDVLEHDLRQAEENINTLFSDVQTLREGRY-PQA 66
N+ + ++ A+ NI++L DVQ L+E Y P+A
Sbjct: 58 NIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEA 92
>pdb|3U0C|A Chain A, Crystal Structure Of N-Terminal Region Of Type Iii
Secretion First Translocator Ipab (Residues 74-224)
pdb|3U0C|B Chain B, Crystal Structure Of N-Terminal Region Of Type Iii
Secretion First Translocator Ipab (Residues 74-224)
Length = 201
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 1 MKRVDGRLEELESRINEEARRLDRLHP 27
+K D ++++LE++IN+ RL L P
Sbjct: 119 LKNADSKIKDLENKINQIQTRLSELDP 145
>pdb|2BSG|A Chain A, The Modeled Structure Of Fibritin (Gpwac) Of Bacteriophage
T4 Based On Cryo-Em Reconstruction Of The Extended Tail
Of Bacteriophage T4
pdb|2BSG|B Chain B, The Modeled Structure Of Fibritin (Gpwac) Of Bacteriophage
T4 Based On Cryo-Em Reconstruction Of The Extended Tail
Of Bacteriophage T4
pdb|2BSG|C Chain C, The Modeled Structure Of Fibritin (Gpwac) Of Bacteriophage
T4 Based On Cryo-Em Reconstruction Of The Extended Tail
Of Bacteriophage T4
Length = 487
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 33 NVDVLEHDLRQAEENINTLFSDVQTLREGRY-PQA 66
N+ + ++ A+ NI++L DVQ L+E Y P+A
Sbjct: 429 NIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEA 463
>pdb|3KDQ|A Chain A, Crystal Structure Of A Functionally Unknown Conserved
Protein From Corynebacterium Diphtheriae.
pdb|3KDQ|B Chain B, Crystal Structure Of A Functionally Unknown Conserved
Protein From Corynebacterium Diphtheriae.
pdb|3KDQ|C Chain C, Crystal Structure Of A Functionally Unknown Conserved
Protein From Corynebacterium Diphtheriae.
pdb|3KDQ|D Chain D, Crystal Structure Of A Functionally Unknown Conserved
Protein From Corynebacterium Diphtheriae
Length = 154
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 8 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDL--RQAEENINTLFSDVQ---TLREGR 62
LEEL +RIN+ RR++R + + L L R A TL+SD+ T R+ R
Sbjct: 50 LEELTTRINDLVRRINRTNSVTEFSEGXTLADALSVRDALLKKRTLYSDLADQLTSRQDR 109
Query: 63 YPQA 66
Y ++
Sbjct: 110 YSRS 113
>pdb|2IBL|A Chain A, Crystal Structure Of A Helper Molecule (Ht-Mf-Thromb)
Based On Mini- Fibritin (Mf) Crystal Structure
(Pdb:1ox3)
Length = 130
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 33 NVDVLEHDLRQAEENINTLFSDVQTLREGRY-PQA 66
NV+VL+ ++ + ++ T SD++T++E Y P+A
Sbjct: 65 NVEVLDKNIGILKTSLETANSDIKTIQEAGYIPEA 99
>pdb|1OX3|A Chain A, Crystal Structure Of Mini-Fibritin
Length = 109
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 33 NVDVLEHDLRQAEENINTLFSDVQTLREGRY-PQA 66
NV+VL+ ++ + ++ T SD++T++E Y P+A
Sbjct: 54 NVEVLDKNIGILKTSLETANSDIKTIQEAGYIPEA 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,995,920
Number of Sequences: 62578
Number of extensions: 64909
Number of successful extensions: 276
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 41
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)