BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6472
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 37 LEHDLRQAEENINTLFSDVQTLREGRYPQASDLH 70
+E DL +A+ I LF+DVQTL++GR+PQ ++
Sbjct: 575 VERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMY 608
>sp|P30427|PLEC_RAT Plectin OS=Rattus norvegicus GN=Plec PE=1 SV=2
Length = 4687
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 30 AKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLH 70
A +E DL +A+ I LF+DVQTL++GR+PQ ++
Sbjct: 574 AAQRAGEVERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMY 614
>sp|Q9JI55|PLEC_CRIGR Plectin (Fragment) OS=Cricetulus griseus GN=PLEC PE=1 SV=1
Length = 4473
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 37 LEHDLRQAEENINTLFSDVQTLREGRYPQASDLH 70
+E DL +A+ I LF+DVQTL++GR+PQ ++
Sbjct: 367 VERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMY 400
>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2
Length = 4691
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 37 LEHDLRQAEENINTLFSDVQTLREGRYPQASDLH 70
+E DL +A+ I LF+DVQTL++GR+PQ ++
Sbjct: 586 VERDLDKADGMIRLLFNDVQTLKDGRHPQGEQMY 619
>sp|Q9H257|CARD9_HUMAN Caspase recruitment domain-containing protein 9 OS=Homo sapiens
GN=CARD9 PE=1 SV=2
Length = 536
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Query: 4 VDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQA----EENINTLFSDVQTLR 59
+ R++ELE+ + E +LDR P + VLE D RQA +E NT+FS + LR
Sbjct: 257 LQARVQELEASVQEG--KLDRSSPY-----IQVLEEDWRQALRDHQEQANTIFSLRKDLR 309
Query: 60 EG 61
+G
Sbjct: 310 QG 311
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1
SV=1
Length = 3672
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 2 KRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREG 61
+ V G+LEE++ +I EE +LD+ + E ++AEE L S Q L+E
Sbjct: 2301 QTVPGKLEEIQKKIQEETEKLDK--------QKETFEAQKKRAEELAAYLNSAQQLLKES 2352
Query: 62 R 62
+
Sbjct: 2353 K 2353
>sp|Q9H254|SPTN4_HUMAN Spectrin beta chain, non-erythrocytic 4 OS=Homo sapiens GN=SPTBN4
PE=1 SV=2
Length = 2564
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 10 ELESRINEEARRLDRL-HPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREG 61
EL+ +I E+ RRL RL P + + + ++ LR E ++ L S V+ L+EG
Sbjct: 1845 ELQGQIEEKRRRLPRLTTPPEPRPSASSMQRTLRAFEHDLQLLVSQVRQLQEG 1897
>sp|Q7MI20|PNP_VIBVY Polyribonucleotide nucleotidyltransferase OS=Vibrio vulnificus
(strain YJ016) GN=pnp PE=3 SV=2
Length = 708
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 14 RINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQ 56
+I E+ R DR+H + A+ N +L D + I+T+F D++
Sbjct: 260 KITEKMARYDRIHEIAAEVNAVILAEDPEADAKEIHTIFHDLE 302
>sp|Q8DBU9|PNP_VIBVU Polyribonucleotide nucleotidyltransferase OS=Vibrio vulnificus
(strain CMCP6) GN=pnp PE=3 SV=1
Length = 708
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 14 RINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQ 56
+I E+ R DR+H + A+ N +L D + I+T+F D++
Sbjct: 260 KITEKMARYDRIHEIAAEVNAVILAEDPEADAKEIHTIFHDLE 302
>sp|Q87M06|PNP_VIBPA Polyribonucleotide nucleotidyltransferase OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=pnp PE=3 SV=1
Length = 711
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 14 RINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQ 56
+I E+ R DR+H + A+ N +L D + I+T+F D++
Sbjct: 260 QITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHDLE 302
>sp|Q7VD64|TAL_PROMA Transaldolase OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=tal PE=3 SV=1
Length = 335
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 8 LEELESRINEEARRLDRLHPLDAKHNVDVLEHDLR 42
LE+LE+ ++ R+LD L PL ++ + + E+D R
Sbjct: 252 LEQLENSDSKLTRKLDSLKPLPSETKIHLEEYDFR 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,907,971
Number of Sequences: 539616
Number of extensions: 879997
Number of successful extensions: 4495
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4459
Number of HSP's gapped (non-prelim): 71
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)