Query psy6472
Match_columns 72
No_of_seqs 65 out of 67
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 19:01:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2odv_A Plectin 1, HD1; plakin 99.4 4.5E-13 1.5E-17 95.7 6.7 68 1-71 137-204 (235)
2 2ycu_A Non muscle myosin 2C, a 96.1 0.00043 1.5E-08 57.4 -2.1 69 1-70 887-957 (995)
3 1g8x_A Myosin II heavy chain f 95.8 0.0012 4.1E-08 55.0 -0.5 67 3-70 897-965 (1010)
4 1hci_A Alpha-actinin 2; triple 88.9 0.21 7E-06 36.3 2.2 35 35-69 175-209 (476)
5 1vcs_A Vesicle transport throu 88.1 3.2 0.00011 25.6 7.3 55 4-58 10-64 (102)
6 2qyw_A Vesicle transport throu 86.6 4 0.00014 25.2 7.4 55 4-58 20-75 (102)
7 3onj_A T-snare VTI1; helix, HA 85.6 4.4 0.00015 24.7 7.6 53 6-58 8-60 (97)
8 1avy_A Fibritin, gpwac M; bact 74.4 11 0.00038 22.9 5.6 35 33-67 16-51 (74)
9 1aa0_A Fibritin, gpwac E; bact 73.4 10 0.00035 24.6 5.6 38 30-67 55-93 (113)
10 1sjj_A Actinin; 3-helix bundle 69.7 19 0.00066 28.1 7.4 36 34-69 413-448 (863)
11 1k1f_A Breakpoint cluster regi 69.1 6.8 0.00023 23.7 3.7 35 22-56 16-50 (72)
12 4etp_A Kinesin-like protein KA 65.2 32 0.0011 25.6 7.6 50 6-60 10-59 (403)
13 3gn9_A Type II secretory pathw 53.5 28 0.00095 22.1 4.8 31 33-68 10-40 (115)
14 3pp5_A BRK1, protein brick1; t 52.4 13 0.00044 22.4 2.9 21 3-23 42-62 (73)
15 3p8c_E Probable protein brick1 52.0 13 0.00045 22.5 2.9 20 3-22 42-61 (75)
16 2aze_B Transcription factor E2 49.1 43 0.0015 20.8 5.1 36 14-57 10-45 (106)
17 1t92_A General secretion pathw 48.1 39 0.0013 21.4 4.9 30 34-68 9-38 (116)
18 3u06_A Protein claret segregat 47.1 83 0.0028 23.5 7.2 31 30-60 29-59 (412)
19 1g6u_A Domain swapped dimer; d 47.0 35 0.0012 18.8 4.1 28 32-59 20-47 (48)
20 3c9i_A Tail needle protein GP2 43.1 91 0.0031 22.5 7.5 49 5-58 83-131 (242)
21 2kep_A General secretion pathw 41.3 44 0.0015 20.8 4.2 30 34-68 9-38 (110)
22 3pe0_A Plectin; cytoskeleton, 34.8 62 0.0021 22.6 4.6 36 34-69 50-85 (283)
23 3pdy_A Plectin; cytoskeleton, 34.2 69 0.0024 20.8 4.5 36 34-69 147-182 (210)
24 2spc_A Spectrin; cytoskeleton; 32.4 72 0.0025 18.2 4.3 36 34-69 45-80 (107)
25 3bbp_D GRIP and coiled-coil do 31.1 51 0.0017 19.8 3.1 23 4-26 44-66 (71)
26 2lch_A Protein OR38; structura 30.2 87 0.003 18.5 4.8 12 48-59 39-50 (113)
27 3hd7_B Syntaxin-1A; membrane p 28.1 1.1E+02 0.0036 18.7 4.7 37 23-59 5-44 (109)
28 1sfc_B Protein (syntaxin 1A), 27.9 92 0.0032 18.0 4.8 32 29-60 11-45 (83)
29 3nmd_A CGMP dependent protein 25.0 1.1E+02 0.0039 18.1 4.1 30 31-60 39-68 (72)
30 2akf_A Coronin-1A; coiled coil 24.0 82 0.0028 16.1 3.5 22 37-58 4-25 (32)
31 1jcd_A Major outer membrane li 23.7 1E+02 0.0035 17.1 4.4 27 34-60 6-32 (52)
32 1zme_C Proline utilization tra 23.4 94 0.0032 16.5 3.2 24 32-55 44-67 (70)
33 3g20_A Type II secretion prote 22.5 1.5E+02 0.0051 18.5 4.9 28 34-66 20-47 (123)
34 1jth_B Syntaxin 1A; coiled-coi 22.3 1.2E+02 0.004 17.2 4.5 22 38-59 9-33 (77)
35 3he4_A Synzip6; heterodimeric 21.8 1.2E+02 0.004 17.1 5.9 19 37-55 36-54 (56)
36 2p2u_A HOST-nuclease inhibitor 21.8 1.8E+02 0.006 19.1 6.0 49 3-55 27-75 (171)
37 2iak_A Bullous pemphigoid anti 21.8 1.4E+02 0.0046 19.4 4.2 35 35-69 163-197 (224)
38 2oxl_A Hypothetical protein YM 21.4 74 0.0025 18.2 2.5 22 21-45 17-38 (64)
39 1gl2_B Syntaxin 7; membrane pr 21.3 1.2E+02 0.0039 16.8 3.6 21 39-59 9-32 (65)
40 2ibl_A Fibritin; foldon, trime 21.3 1.8E+02 0.0063 19.1 4.9 37 27-63 59-95 (130)
41 3fb2_A Spectrin alpha chain, b 20.4 1.7E+02 0.0057 18.7 4.4 35 35-69 162-196 (218)
42 1quu_A Human skeletal muscle a 20.3 1.9E+02 0.0065 18.9 5.9 63 6-68 21-91 (250)
43 2nps_B Syntaxin 13, vesicle-as 20.1 1.3E+02 0.0044 16.8 3.6 13 48-60 18-30 (71)
No 1
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=99.40 E-value=4.5e-13 Score=95.75 Aligned_cols=68 Identities=28% Similarity=0.418 Sum_probs=62.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccc
Q psy6472 1 MKRVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDLHI 71 (72)
Q Consensus 1 ~~~ceekL~~~~~~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~ql~~ 71 (72)
++.||++|+.+++.|++|.+.++++.|+++ ++.+++||..+|+.|+++|+||+.|++|+||+|+++++
T Consensus 137 a~~~e~~L~~~~~~L~~d~~~l~~~~a~k~---~e~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~ 204 (235)
T 2odv_A 137 AGLAEEQLNQADALLQSDVRLLAAGKVPQR---AGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYR 204 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCCCSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 357999999999999999999999988766 56789999999999999999999999999999999874
No 2
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=96.08 E-value=0.00043 Score=57.43 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=58.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhcCCcchhh-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCccccc
Q psy6472 1 MKRVDGRLEELESRINEEARRLDRLHPLDAK-HNVDVLEHDLRQAEENIN-TLFSDVQTLREGRYPQASDLH 70 (72)
Q Consensus 1 ~~~ceekL~~~~~~lq~d~rrle~g~p~q~~-~~v~~~e~dL~~~E~~Ir-~lf~DVq~LkdgrypQa~ql~ 70 (72)
+..||.+|+..+..|+++. +-++..++++. +..+.++.||...|+.|. .++.+++.|.+++||+++++.
T Consensus 887 a~~~e~Wl~eke~~l~s~d-~g~dl~~vqallkKhea~e~dl~a~e~ri~~~l~~~a~~L~~~~y~~~~~I~ 957 (995)
T 2ycu_A 887 LKKLENWATTKSVYLGSNE-TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELT 957 (995)
T ss_dssp CCCCCCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTTTCSCSSHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4568899999999999864 35667777755 677889999999999998 999999999999999998875
No 3
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=95.84 E-value=0.0012 Score=54.98 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=50.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhcCCcchhh-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCccccc
Q psy6472 3 RVDGRLEELESRINEEARRLDRLHPLDAK-HNVDVLEHDLRQAEENIN-TLFSDVQTLREGRYPQASDLH 70 (72)
Q Consensus 3 ~ceekL~~~~~~lq~d~rrle~g~p~q~~-~~v~~~e~dL~~~E~~Ir-~lf~DVq~LkdgrypQa~ql~ 70 (72)
.++++|+..++.|.++. +-.+..++++. +..+.++.||...|+.|+ .+..+++.|.+++|++++++.
T Consensus 897 ~~e~Wl~ek~~~l~s~d-~g~dL~~Vqal~KKhea~e~dl~a~e~ri~~~l~~~a~eL~~~~y~~~~~I~ 965 (1010)
T 1g8x_A 897 KLENWATTKSVYLGSNE-TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELT 965 (1010)
T ss_dssp HHHHHHHHTHHHHSSCC-SCCSTTTTGGGTTSHHHHTTTTTHHHHTHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHhcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 35566666666655532 22235566555 667889999999999999 999999999999999998875
No 4
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=88.92 E-value=0.21 Score=36.25 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q psy6472 35 DVLEHDLRQAEENINTLFSDVQTLREGRYPQASDL 69 (72)
Q Consensus 35 ~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~ql 69 (72)
..++.||...+..|..++...+.|.++.||.+..+
T Consensus 175 ~~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~I 209 (476)
T 1hci_A 175 EAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNV 209 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhHH
Confidence 57889999999999999999999999999998764
No 5
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=88.11 E-value=3.2 Score=25.59 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472 4 VDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTL 58 (72)
Q Consensus 4 ceekL~~~~~~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~L 58 (72)
.|.....+-+-|..-+.++-....-+-++.+..+++.|++++.+|++|=-.|+-+
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555555566666666666665556678889999999999999999998777654
No 6
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=86.62 E-value=4 Score=25.17 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhcC-CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472 4 VDGRLEELESRINEEARRLDRL-HPLDAKHNVDVLEHDLRQAEENINTLFSDVQTL 58 (72)
Q Consensus 4 ceekL~~~~~~lq~d~rrle~g-~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~L 58 (72)
.|.....+-+-|..-+.++-.. .+-+-++.+..+++.|++++.+|++|=-.|+-+
T Consensus 20 YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 20 LHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455555566666666667433 456778889999999999999999998777653
No 7
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=85.60 E-value=4.4 Score=24.71 Aligned_cols=53 Identities=4% Similarity=0.011 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472 6 GRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTL 58 (72)
Q Consensus 6 ekL~~~~~~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~L 58 (72)
.....+-+-|..-+.++-+...-+-++.+..+++.|.+++.+|++|=..|+.+
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444455555556555555778889999999999999999999888876
No 8
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=74.36 E-value=11 Score=22.86 Aligned_cols=35 Identities=31% Similarity=0.573 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcc
Q psy6472 33 NVDVLEHDLRQAEENINTLFSDVQTLR-EGRYPQAS 67 (72)
Q Consensus 33 ~v~~~e~dL~~~E~~Ir~lf~DVq~Lk-dgrypQa~ 67 (72)
.++.+-.+.+.+++.|..+..+||.|. .|+-|.|.
T Consensus 16 ~iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~AP 51 (74)
T 1avy_A 16 DIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAP 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred chhhhheeeccccchhhhhhhhhHHHHhcCCCCCCC
Confidence 344455566778888888888999998 57777765
No 9
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=73.40 E-value=10 Score=24.63 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcc
Q psy6472 30 AKHNVDVLEHDLRQAEENINTLFSDVQTLR-EGRYPQAS 67 (72)
Q Consensus 30 ~~~~v~~~e~dL~~~E~~Ir~lf~DVq~Lk-dgrypQa~ 67 (72)
++..+..+-.+.+.+++.|..+..|||.|. .|+-|.|+
T Consensus 55 ~et~i~~~t~~v~t~k~~i~~~e~~vqalq~ag~i~~AP 93 (113)
T 1aa0_A 55 NETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAP 93 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred cccchhhhheeecccccchhhhhhhhHHHHhcCCCCCCC
Confidence 344455666778888999999999999999 57777775
No 10
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=69.72 E-value=19 Score=28.12 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q psy6472 34 VDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDL 69 (72)
Q Consensus 34 v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~ql 69 (72)
...++.||...+..++.+....+.|..+.|+.++.+
T Consensus 413 h~~f~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I 448 (863)
T 1sjj_A 413 HEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSV 448 (863)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 356788999999999999999999999999998764
No 11
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=69.14 E-value=6.8 Score=23.66 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=28.8
Q ss_pred hhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472 22 LDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQ 56 (72)
Q Consensus 22 le~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq 56 (72)
-++-+|.=.-+.|.-+|++|..|-+.||.|-..|.
T Consensus 16 p~~epp~m~l~~vgdiEqeLe~Ck~sIrrLE~evn 50 (72)
T 1k1f_A 16 PDSEPPRMELRSVGDIEQELERAKASIRRLEQEVN 50 (72)
T ss_dssp TTSCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHhHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45566766667889999999999999999988764
No 12
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.22 E-value=32 Score=25.56 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6472 6 GRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTLRE 60 (72)
Q Consensus 6 ekL~~~~~~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~Lkd 60 (72)
+++..++..+.+-.+.++. .+.++..+...|.+-|..-|.|+|.+|-||.
T Consensus 10 ~~~~~l~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKD-----TELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444444444443333333 4556677777899999999999999999985
No 13
>3gn9_A Type II secretory pathway, pseudopilin EPSG; general secretory pathway, major pilin, protein transport, C methylation; 1.86A {Vibrio vulnificus} PDB: 3fu1_A
Probab=53.48 E-value=28 Score=22.07 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccc
Q psy6472 33 NVDVLEHDLRQAEENINTLFSDVQTLREGRYPQASD 68 (72)
Q Consensus 33 ~v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~q 68 (72)
.+.....||..+++.|.....| .|+||..+|
T Consensus 10 k~~~a~~di~~l~~ALd~Y~lD-----~G~YPtteq 40 (115)
T 3gn9_A 10 DQQKAITDIVALENALDMYKLD-----NSVYPTTDQ 40 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HSSCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hCCCCCcHH
Confidence 3445567888999999888877 699998654
No 14
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=52.37 E-value=13 Score=22.38 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=15.9
Q ss_pred chhhHHHHHHHHHHHHHHHhh
Q psy6472 3 RVDGRLEELESRINEEARRLD 23 (72)
Q Consensus 3 ~ceekL~~~~~~lq~d~rrle 23 (72)
.|++||..+..+|+.=.++|+
T Consensus 42 sce~KLa~ln~kL~~lE~~L~ 62 (73)
T 3pp5_A 42 STRNKLSDLNEKLTILDRQVD 62 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 689999988888887555543
No 15
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=52.04 E-value=13 Score=22.46 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=13.7
Q ss_pred chhhHHHHHHHHHHHHHHHh
Q psy6472 3 RVDGRLEELESRINEEARRL 22 (72)
Q Consensus 3 ~ceekL~~~~~~lq~d~rrl 22 (72)
.|+.||..+..+|+.=.++|
T Consensus 42 sce~KLa~ln~KL~~LEr~L 61 (75)
T 3p8c_E 42 SCRSRLATLNEKLTALERRI 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58888887777777644444
No 16
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=49.08 E-value=43 Score=20.80 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472 14 RINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQT 57 (72)
Q Consensus 14 ~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~ 57 (72)
.|+.+++.|+. .|+.++.. +..|...|+.+..|...
T Consensus 10 ~Lk~El~~L~~-----~E~~LD~~---i~~~~~~l~~lted~~n 45 (106)
T 2aze_B 10 GLTQDLRQLQE-----SEQQLDHL---MNICTTQLRLLSEDTDS 45 (106)
T ss_dssp HHHHHHHHHHH-----HHHHHHHH---HHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHH---HHHHHHHHHHHhhcccc
Confidence 45666666665 66766666 88888888888877654
No 17
>1t92_A General secretion pathway protein G; domain-swapping, zinc, pseudopilin, protein transport; 1.60A {Klebsiella pneumoniae} SCOP: d.24.1.3
Probab=48.11 E-value=39 Score=21.35 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccc
Q psy6472 34 VDVLEHDLRQAEENINTLFSDVQTLREGRYPQASD 68 (72)
Q Consensus 34 v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~q 68 (72)
+.....||..+++.|.....|. |+||..+|
T Consensus 9 ~~~a~adi~~l~~ALd~Y~lD~-----G~YPtt~q 38 (116)
T 1t92_A 9 RQKVVSDLVALEGALDMYKLDN-----SRYPTTEQ 38 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----SSCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----CCCCCcHH
Confidence 3445667777788777666554 99998643
No 18
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.07 E-value=83 Score=23.52 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6472 30 AKHNVDVLEHDLRQAEENINTLFSDVQTLRE 60 (72)
Q Consensus 30 ~~~~v~~~e~dL~~~E~~Ir~lf~DVq~Lkd 60 (72)
.+.+...+...|.+.|..-|.|+|.++-||+
T Consensus 29 ~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 29 QAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456667777788999999999999999986
No 19
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=47.00 E-value=35 Score=18.77 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472 32 HNVDVLEHDLRQAEENINTLFSDVQTLR 59 (72)
Q Consensus 32 ~~v~~~e~dL~~~E~~Ir~lf~DVq~Lk 59 (72)
.+.+.+|.+|+.+|.-+.-+-.-+|.||
T Consensus 20 eelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999998888886
No 20
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=43.14 E-value=91 Score=22.46 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6472 5 DGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDVQTL 58 (72)
Q Consensus 5 eekL~~~~~~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~L 58 (72)
|+++..++..|.+-..||-. ++..++.+|.-|-..|+-|-.+-.+|+.|
T Consensus 83 e~rI~a~~a~l~dHE~RIt~-----~~~~ia~~e~Rit~~e~~i~~l~~~v~~l 131 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITA-----NTKAITALNVRVTTAEGEIASLQTNVSAL 131 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHHHhhh-----hhhhhhhhhheeecccccchhhhhhhhhh
Confidence 56667777777777777764 56666677777777777777777777765
No 21
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=41.29 E-value=44 Score=20.77 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccc
Q psy6472 34 VDVLEHDLRQAEENINTLFSDVQTLREGRYPQASD 68 (72)
Q Consensus 34 v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~q 68 (72)
+.....||..++..|.....| -|+||..+|
T Consensus 9 ~~~a~a~i~~l~~Al~~Y~lD-----~G~YPtt~q 38 (110)
T 2kep_A 9 VTVAKGDIKAIAAALDMYKLD-----NFAYPSTQQ 38 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----TSSCCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hCCCCCcHH
Confidence 444566777778877766655 488887643
No 22
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=34.75 E-value=62 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q psy6472 34 VDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDL 69 (72)
Q Consensus 34 v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~ql 69 (72)
-..++.||..-+..|..+...-+.|...+||.++.+
T Consensus 50 h~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~~~I 85 (283)
T 3pe0_A 50 YSALMRELELKEKKIKELQNAGDRLLREDHPARPTV 85 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 457889999999999999999999999999988654
No 23
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=34.25 E-value=69 Score=20.83 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q psy6472 34 VDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDL 69 (72)
Q Consensus 34 v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~ql 69 (72)
-..++.||..-+..|..+....+.|....||.++.+
T Consensus 147 ~~~f~~el~~~~~~v~~l~~~~~~Ll~~~h~~~~~I 182 (210)
T 3pdy_A 147 YSALMRELELKEKKIKELQNAGDRLLREDHPARPTV 182 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 356788999999999999999999999999987653
No 24
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=32.43 E-value=72 Score=18.20 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q psy6472 34 VDVLEHDLRQAEENINTLFSDVQTLREGRYPQASDL 69 (72)
Q Consensus 34 v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~ql 69 (72)
-..++.++..-+.-|..+..-.+.|.++.||.++.+
T Consensus 45 h~~fe~~~~~~~~~i~~l~~~a~~L~~~~h~~~~~I 80 (107)
T 2spc_A 45 HEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLV 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 356788888889999999999999988888877653
No 25
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=31.08 E-value=51 Score=19.75 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCC
Q psy6472 4 VDGRLEELESRINEEARRLDRLH 26 (72)
Q Consensus 4 ceekL~~~~~~lq~d~rrle~g~ 26 (72)
.+.+|..--..|-+++||+|+..
T Consensus 44 tnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 44 TNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhH
Confidence 45577777788999999999865
No 26
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=30.20 E-value=87 Score=18.45 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy6472 48 INTLFSDVQTLR 59 (72)
Q Consensus 48 Ir~lf~DVq~Lk 59 (72)
|..+|.-+++||
T Consensus 39 ~~~l~R~~HTlK 50 (113)
T 2lch_A 39 WNKIYRLVHTMK 50 (113)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH
Confidence 344444444444
No 27
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=28.06 E-value=1.1e+02 Score=18.69 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=19.6
Q ss_pred hcCCcchhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy6472 23 DRLHPLDAKHNVDVLEHDLRQAEENI---NTLFSDVQTLR 59 (72)
Q Consensus 23 e~g~p~q~~~~v~~~e~dL~~~E~~I---r~lf~DVq~Lk 59 (72)
|++..-++=+++.+-.+++.+.|..| .++|.|+..|-
T Consensus 5 ~~~~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV 44 (109)
T 3hd7_B 5 DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLV 44 (109)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555556666677777665 45677776654
No 28
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=27.88 E-value=92 Score=17.98 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q psy6472 29 DAKHNVDVLEHDLRQAEENIN---TLFSDVQTLRE 60 (72)
Q Consensus 29 q~~~~v~~~e~dL~~~E~~Ir---~lf~DVq~Lkd 60 (72)
+.-..+.+-.+++.++|..|. +||.|+..|-.
T Consensus 11 ~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~ 45 (83)
T 1sfc_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVE 45 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666777776654 57888777643
No 29
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.04 E-value=1.1e+02 Score=18.08 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6472 31 KHNVDVLEHDLRQAEENINTLFSDVQTLRE 60 (72)
Q Consensus 31 ~~~v~~~e~dL~~~E~~Ir~lf~DVq~Lkd 60 (72)
+..+..++..|++-|..|+.|.+-+.-++.
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345778888899999999999887765543
No 30
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.04 E-value=82 Score=16.06 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6472 37 LEHDLRQAEENINTLFSDVQTL 58 (72)
Q Consensus 37 ~e~dL~~~E~~Ir~lf~DVq~L 58 (72)
+|.|++++....+.+..-|.-|
T Consensus 4 lee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444443
No 31
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.75 E-value=1e+02 Score=17.07 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6472 34 VDVLEHDLRQAEENINTLFSDVQTLRE 60 (72)
Q Consensus 34 v~~~e~dL~~~E~~Ir~lf~DVq~Lkd 60 (72)
++.+..+++.+=+-+.+|-+||..|+.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666665553
No 32
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.40 E-value=94 Score=16.52 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy6472 32 HNVDVLEHDLRQAEENINTLFSDV 55 (72)
Q Consensus 32 ~~v~~~e~dL~~~E~~Ir~lf~DV 55 (72)
..++.++..+..+|..|..|-..+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888887776543
No 33
>3g20_A Type II secretion protein; general secretory pathway, major pilin, protein transport; HET: NHE; 1.78A {Escherichia coli O157} SCOP: d.24.1.3
Probab=22.45 E-value=1.5e+02 Score=18.46 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Q psy6472 34 VDVLEHDLRQAEENINTLFSDVQTLREGRYPQA 66 (72)
Q Consensus 34 v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa 66 (72)
......+|..++..|...+.| .|+||-.
T Consensus 20 ~~~a~a~l~~i~~Ale~Y~ld-----~g~YP~t 47 (123)
T 3g20_A 20 RQKVMSDLVALESTLDMYRLD-----NNRYPTT 47 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HSSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hCCCCCC
Confidence 344566788888888888876 5999976
No 34
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=22.27 E-value=1.2e+02 Score=17.19 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=12.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHH
Q psy6472 38 EHDLRQAEENI---NTLFSDVQTLR 59 (72)
Q Consensus 38 e~dL~~~E~~I---r~lf~DVq~Lk 59 (72)
.+++.++|..| .+||.|+..|-
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV 33 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLV 33 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 45677776664
No 35
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.82 E-value=1.2e+02 Score=17.05 Aligned_cols=19 Identities=42% Similarity=0.594 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6472 37 LEHDLRQAEENINTLFSDV 55 (72)
Q Consensus 37 ~e~dL~~~E~~Ir~lf~DV 55 (72)
+|.|+..+|.-|..+-.||
T Consensus 36 lekdianlekdianlerdv 54 (56)
T 3he4_A 36 LEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555554
No 36
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=21.81 E-value=1.8e+02 Score=19.09 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy6472 3 RVDGRLEELESRINEEARRLDRLHPLDAKHNVDVLEHDLRQAEENINTLFSDV 55 (72)
Q Consensus 3 ~ceekL~~~~~~lq~d~rrle~g~p~q~~~~v~~~e~dL~~~E~~Ir~lf~DV 55 (72)
-+..++..+++.+.+++.++..- ++..+..+...+..+++.|+.++...
T Consensus 27 ~l~r~~~~i~~~~n~eI~~ik~~----~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 27 TIDRKVGEIEAQMNEAIDAAKAR----ASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777777777777777652 34444555556666777776666554
No 37
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=21.76 E-value=1.4e+02 Score=19.42 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q psy6472 35 DVLEHDLRQAEENINTLFSDVQTLREGRYPQASDL 69 (72)
Q Consensus 35 ~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~ql 69 (72)
..++.||..-+..|..+..-.+.|....||-+..+
T Consensus 163 ~~l~~el~~~~~~v~~v~~~g~~L~~~~h~~~~~I 197 (224)
T 2iak_A 163 AELMRELEQKEESIKAVQEIAEQLLLENHPARLTI 197 (224)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 46788899999999999999999999999987643
No 38
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=21.40 E-value=74 Score=18.24 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=18.0
Q ss_pred HhhcCCcchhhhhHHHHHHHHHHHH
Q psy6472 21 RLDRLHPLDAKHNVDVLEHDLRQAE 45 (72)
Q Consensus 21 rle~g~p~q~~~~v~~~e~dL~~~E 45 (72)
-+.+|.|+-++..+..+ |.++|
T Consensus 17 il~~g~~vsnKaIi~~L---I~rLE 38 (64)
T 2oxl_A 17 LMLSGDNVNNKNIILSL---IHSLE 38 (64)
T ss_dssp HHHTTCCCSHHHHHHHH---HHHHH
T ss_pred HHHcCCCCcHHHHHHHH---HHHHH
Confidence 47789999999999998 55555
No 39
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=21.33 E-value=1.2e+02 Score=16.78 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=12.0
Q ss_pred HHHHHHHHHH---HHHHHHHHHHH
Q psy6472 39 HDLRQAEENI---NTLFSDVQTLR 59 (72)
Q Consensus 39 ~dL~~~E~~I---r~lf~DVq~Lk 59 (72)
.++.++|..| .+||.|+..|-
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV 32 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMI 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 45788877764
No 40
>2ibl_A Fibritin; foldon, trimerization, bacteriophage T4, HELP molecule, chaperone; 1.32A {Unidentified phage} PDB: 1ox3_A
Probab=21.30 E-value=1.8e+02 Score=19.09 Aligned_cols=37 Identities=27% Similarity=0.502 Sum_probs=32.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy6472 27 PLDAKHNVDVLEHDLRQAEENINTLFSDVQTLREGRY 63 (72)
Q Consensus 27 p~q~~~~v~~~e~dL~~~E~~Ir~lf~DVq~Lkdgry 63 (72)
+++...+|+.++.++...-..|..+..+|.+.+++-|
T Consensus 59 ~VqVQkNVv~Ld~N~~~~~dkvnEvid~VN~I~~a~~ 95 (130)
T 2ibl_A 59 TVSVLRNVEVLDKNIGILKTSLETANSDIKTIQEAGY 95 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5778889999999999999999999999999998644
No 41
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=20.41 E-value=1.7e+02 Score=18.68 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q psy6472 35 DVLEHDLRQAEENINTLFSDVQTLREGRYPQASDL 69 (72)
Q Consensus 35 ~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~ql 69 (72)
..++.+|...+.-|..+..-.+.|....||.++.+
T Consensus 162 ~~f~~~l~~~~~~v~~l~~~~~~L~~~~h~~~~~I 196 (218)
T 3fb2_A 162 EDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDI 196 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 45677888888999999999999999999877643
No 42
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=20.32 E-value=1.9e+02 Score=18.88 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCc-chhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccc
Q psy6472 6 GRLEELESRINEEARRLDRLHP-LDAKHN-------VDVLEHDLRQAEENINTLFSDVQTLREGRYPQASD 68 (72)
Q Consensus 6 ekL~~~~~~lq~d~rrle~g~p-~q~~~~-------v~~~e~dL~~~E~~Ir~lf~DVq~LkdgrypQa~q 68 (72)
.+...+++=|..-...+.+..+ ..--.. -..++.||..-+.-+..+..-.+.|....||.++.
T Consensus 21 ~~~~e~~~Wl~e~e~~l~~~~~~g~dl~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~ 91 (250)
T 1quu_A 21 QKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVN 91 (250)
T ss_dssp HHHHHHHHHTTTHHHHHHCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHHHHhHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhH
Confidence 3444445555555555655444 222222 24677888888889999999999999999998764
No 43
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=20.05 E-value=1.3e+02 Score=16.79 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHh
Q psy6472 48 INTLFSDVQTLRE 60 (72)
Q Consensus 48 Ir~lf~DVq~Lkd 60 (72)
|.+||.|+..|-.
T Consensus 18 L~~iF~dla~lV~ 30 (71)
T 2nps_B 18 VNQIFKDLAMMIH 30 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567888777643
Done!